Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold160
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5021213
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 92036 characters in sequence are not A, C, G, or T
File 9 of 30
Found at i:1364438 original size:79 final size:78
Alignment explanation
Indices: 1364339--1364583 Score: 305
Period size: 79 Copynumber: 3.1 Consensus size: 78
1364329 GGGGACGAGA
* * *
1364339 GGATACTTCAACCCTGGTTTTATTTCCAAAACACCAAATTTT-CATAATCGGGGATACTCTAACC
1 GGATACTCCAACCCTAGTTTTATTTCCAAAACA-C-AATTTTCCACAATCGGGGATACTCTAACC
*
1364403 CCGTTATTTCCGAAG
64 CCGTTATTTCTGAAG
* **
1364418 GGATACTCCAA-CCTCAGTTTTATTTCTAAAACACTAATTTTCCACAATCGGGGATACTCCGACC
1 GGATACTCCAACCCT-AGTTTTATTTCCAAAACAC-AATTTTCCACAATCGGGGATACTCTAACC
*
1364482 CTGTTATTTCTGAAG
64 CCGTTATTTCTGAAG
* ** ** *
1364497 GGATACTCCAACCCTAGTTTTATTTCCAAAACATCGATTTTCCACCCTTAGGAATACTCTAACCC
1 GGATACTCCAACCCTAGTTTTATTTCCAAAACA-CAATTTTCCACAATCGGGGATACTCTAACCC
1364562 CGTTATTTCTGAAG
65 CGTTATTTCTGAAG
1364576 GGATACTC
1 GGATACTC
1364584 TGACCTTGTT
Statistics
Matches: 143, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 10 0.07
79 129 0.90
80 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.32
Consensus pattern (78 bp):
GGATACTCCAACCCTAGTTTTATTTCCAAAACACAATTTTCCACAATCGGGGATACTCTAACCCC
GTTATTTCTGAAG
Found at i:1367416 original size:20 final size:19
Alignment explanation
Indices: 1367378--1367424 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
1367368 TAAGCAGGTC
1367378 CTTTTCTTTTCTCTTTTTTT
1 CTTTT-TTTTCTCTTTTTTT
1367398 C-TTTTTTTCTCTTTTTTT
1 CTTTTTTTTCTCTTTTTTT
1367416 -TTATTTTTT
1 CTT-TTTTTT
1367425 TTTTGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 15 0.60
19 9 0.36
20 1 0.04
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (19 bp):
CTTTTTTTTCTCTTTTTTT
Found at i:1367426 original size:10 final size:10
Alignment explanation
Indices: 1367378--1367427 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
1367368 TAAGCAGGTC
*
1367378 CTTTTCTTTT
1 CTTTTTTTTT
*
1367388 CTCTTTTTTT
1 CTTTTTTTTT
*
1367398 CTTTTTTTCT
1 CTTTTTTTTT
1367408 CTTTTTTTTT
1 CTTTTTTTTT
*
1367418 ATTTTTTTTT
1 CTTTTTTTTT
1367428 TGAGAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:1376520 original size:78 final size:79
Alignment explanation
Indices: 1376377--1376586 Score: 250
Period size: 78 Copynumber: 2.7 Consensus size: 79
1376367 TCGAAAGTTT
* * * *
1376377 AATATTTTGGAGATGAAA-TCGGGGTTGGAGTATCCTCTCAGAAATAAC-AGGGTTGGAGTATCC
1 AATATTTTGGAAATAAAACT-GGGGTTAGAGTATCC-CTCAGAAATAACGAGGGTTAGAGTATCC
1376440 CCGATTGTAAAAAATC
64 CCGATTGTAAAAAATC
**
1376456 GTTATTTTGGAAATAAAACTGGGGTTAGAGTATCCCTCAGAAATAACGA-GGTTAGAGTATCCCC
1 AATATTTTGGAAATAAAACTGGGGTTAGAGTATCCCTCAGAAATAACGAGGGTTAGAGTATCCCC
*
1376520 GATTGTGAAAAATC
66 GATTGTAAAAAATC
* ** *
1376534 AATGTTTTAAAAATAAAACTGAGGTTAGAGTATCCCCTC-GAAAATAACG-GGGT
1 AATATTTTGGAAATAAAACTGGGGTTAGAGTAT-CCCTCAG-AAATAACGAGGGT
1376587 CGAAAAATCA
Statistics
Matches: 113, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 67 0.59
79 45 0.40
80 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (79 bp):
AATATTTTGGAAATAAAACTGGGGTTAGAGTATCCCTCAGAAATAACGAGGGTTAGAGTATCCCC
GATTGTAAAAAATC
Found at i:1376627 original size:62 final size:62
Alignment explanation
Indices: 1376526--1376648 Score: 178
Period size: 62 Copynumber: 2.0 Consensus size: 62
1376516 CCCCGATTGT
1376526 GAAAAATCAATGTTTTAAAAATAAAACTGAGGTTAGAGTATCCCCTC-GAAAATAACGGGGTC
1 GAAAAATCAATGTTTTAAAAATAAAACTGAGGTTAGAGTATCCCCTCAG-AAATAACGGGGTC
** * *
1376588 GAAAAATCAATGTTTTGGAAATAAAACTG-GGTTTGGAGTATCCTCTCAGAAATAACGGGGT
1 GAAAAATCAATGTTTTAAAAATAAAACTGAGG-TTAGAGTATCCCCTCAGAAATAACGGGGT
1376649 TGGAGTATCC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
61 2 0.04
62 52 0.95
63 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (62 bp):
GAAAAATCAATGTTTTAAAAATAAAACTGAGGTTAGAGTATCCCCTCAGAAATAACGGGGTC
Found at i:1376715 original size:51 final size:51
Alignment explanation
Indices: 1376645--1376762 Score: 182
Period size: 51 Copynumber: 2.3 Consensus size: 51
1376635 AGAAATAACG
*
1376645 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTAAAAATAAAACCA
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTAAAAATAAAACCA
** ***
1376696 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAATTG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTAAAAATAAAACCA
1376747 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
1376763 TCAGAAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTAAAAATAAAACCA
Found at i:1376779 original size:79 final size:79
Alignment explanation
Indices: 1376696--1376841 Score: 238
Period size: 79 Copynumber: 1.8 Consensus size: 79
1376686 AATAAAACCA
* *
1376696 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAATTGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAAACTGGGGTTGGAGTATCC
1376761 CCTCAGAAATAACG
66 CCTCAGAAATAACG
** * *
1376775 GGGTTGGAGTATCCTTGATTGTGAAAAATTGATGTTTTGAAAATAAAACTGGGGTTTGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAAACTGGGGTTGGAGTATCC
1376840 CC
66 CC
1376842 AATTGTGAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAAACTGGGGTTGGAGTATCC
CCTCAGAAATAACG
Found at i:1376821 original size:130 final size:130
Alignment explanation
Indices: 1376588--1376970 Score: 543
Period size: 130 Copynumber: 2.9 Consensus size: 130
1376578 TAACGGGGTC
* * * *
1376588 GAAAAATCAATGTTTTGGAAATAAAACTGGGTTTGGAGTATCCTCTCAGAAATAACGGGGTTGGA
1 GAAAAATCGATGTTTTGGAAATAAAATTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGA
* * *
1376653 GTATCCTCGATTGTGAAAAATCGATGTTTTAAAAATAAAACCAGGGTTGGAGTATCCCCGATTGT
66 GTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCCCAATTGT
1376718 GAAAAATCGATGTTTTGGAAATAAAATTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGA
1 GAAAAATCGATGTTTTGGAAATAAAATTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGA
* ** *
1376783 GTATCCTTGATTGTGAAAAATTGATGTTTTGAAAATAAAACTGGGGTTTGAGTATCCCCAATTGT
66 GTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCCCAATTGT
* * * * **
1376848 GAAAAATTGGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTC-GAAAATAACAAGGTTGG
1 GAAAAATCGATGTTTTGGAAATAAAATTGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGG
* * * * * *
1376912 AGTATCCCCGATTATGAAAAATTAATGTTTTGGAAATAAAATCAGGGTTGGAGTTTCCC
65 AGTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCC
1376971 TTCAAAAATA
Statistics
Matches: 225, Mismatches: 27, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
129 1 0.00
130 224 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (130 bp):
GAAAAATCGATGTTTTGGAAATAAAATTGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGA
GTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCCCAATTGT
Found at i:1376847 original size:51 final size:51
Alignment explanation
Indices: 1376773--1376892 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 51
1376763 TCAGAAATAA
***
1376773 CGGGGTTGGAGTATCCTTGATTGTGAAAAATTGATGTTTTGAAAATAAAA-
1 CGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGAAAATAAAAT
* * *
1376823 CTGGGGTTTGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAAT
1 C-GGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGAAAATAAAAT
*
1376875 CGAGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
1376893 TCGAAAATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 1 0.02
51 58 0.97
52 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.33
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGAAAATAAAAT
Found at i:1377059 original size:79 final size:79
Alignment explanation
Indices: 1376825--1377060 Score: 298
Period size: 79 Copynumber: 3.0 Consensus size: 79
1376815 AAATAAAACT
* *
1376825 GGGGTTTGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAATC-GAGGTTGGAGTAT
1 GGGGTTAGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAATCAG-GGTTGGAGTAT
1376889 CCCCTC-GAAAATAAC
65 CCCCTCAG-AAATAAC
** * * * * *
1376904 AAGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTGGAAATAAAATCAGGGTTGGAGTTTC
1 GGGGTTAGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGGGTTGGAGTATC
* *
1376969 CCTTCAAAAATAAC
66 CCCTCAGAAATAAC
* * *
1376983 GGGGTTAGAGTATCCTCC-ATTGTGAAAAATCGATGTTTTGGGAATAAAATCAGGGTTGGTGTAT
1 GGGGTTAGAGTATCC-CCAATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGGGTTGGAGTAT
1377047 CCCCTCAGAAATAA
65 CCCCTCAGAAATAA
1377061 AAATATGAAT
Statistics
Matches: 133, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 130 0.98
80 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30
Consensus pattern (79 bp):
GGGGTTAGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGGGTTGGAGTATC
CCCTCAGAAATAAC
Found at i:1382478 original size:20 final size:20
Alignment explanation
Indices: 1382453--1382500 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
1382443 CGAACCCAAG
*
1382453 CAAACCTTGACCACTATAAC
1 CAAACCTTGAACACTATAAC
* *
1382473 CAAACCTTTAACGCTATAAC
1 CAAACCTTGAACACTATAAC
1382493 CAAACCTT
1 CAAACCTT
1382501 TGTTTGGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.33, G:0.04, T:0.23
Consensus pattern (20 bp):
CAAACCTTGAACACTATAAC
Found at i:1384399 original size:20 final size:21
Alignment explanation
Indices: 1384368--1384406 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
1384358 AGGTCAAAAC
*
1384368 CCTAGAAAGTATGGATACAGT
1 CCTAGAAAGTATCGATACAGT
1384389 CCTAG-AAGTATCGATACA
1 CCTAGAAAGTATCGATACA
1384407 TATTGCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (21 bp):
CCTAGAAAGTATCGATACAGT
Found at i:1384433 original size:13 final size:13
Alignment explanation
Indices: 1384415--1384439 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1384405 CATATTGCTT
1384415 TGTATCGATACAC
1 TGTATCGATACAC
1384428 TGTATCGATACA
1 TGTATCGATACA
1384440 TGATCTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1384457 original size:32 final size:33
Alignment explanation
Indices: 1384396--1384459 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
1384386 AGTCCTAGAA
*
1384396 GTATCGATACATATTGCTTTGTATCGATACACT
1 GTATCGATACATATTGCTTGGTATCGATACACT
1384429 GTATCGATACATGA-T-CTTGGTATCGATACAC
1 GTATCGATACAT-ATTGCTTGGTATCGATACAC
1384460 AGTGAATTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.52
33 13 0.45
34 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (33 bp):
GTATCGATACATATTGCTTGGTATCGATACACT
Found at i:1388090 original size:30 final size:29
Alignment explanation
Indices: 1388049--1388144 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 29
1388039 TCTTAATCGC
1388049 TTTTTCGTTTCTTGTTTTTGTTGCAGCTGT
1 TTTTTC-TTTCTTGTTTTTGTTGCAGCTGT
**
1388079 TTCTTTCTTTCTT-TTTTATAGCTT--AATTGCT
1 TT-TTTCTTTCTTGTTTT-T-G-TTGCAGCTG-T
*
1388110 TTTTTGTTTCTTGTTTTTGTTGCAGCTGT
1 TTTTTCTTTCTTGTTTTTGTTGCAGCTGT
1388139 TTTTTC
1 TTTTTC
1388145 CTTTTTAGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 17
0.69 0.08 0.23
Matches are distributed among these distances:
28 2 0.04
29 11 0.21
30 25 0.48
31 12 0.23
32 2 0.04
ACGTcount: A:0.06, C:0.14, G:0.15, T:0.66
Consensus pattern (29 bp):
TTTTTCTTTCTTGTTTTTGTTGCAGCTGT
Found at i:1388349 original size:3 final size:3
Alignment explanation
Indices: 1388343--1388391 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
1388333 TTTTCTTTTC
* *
1388343 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT ATT ACT A-T ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1388389 ATT
1 ATT
1388392 TAATTATGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
2 4 0.10
3 37 0.90
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:1389006 original size:42 final size:42
Alignment explanation
Indices: 1388957--1389082 Score: 155
Period size: 42 Copynumber: 3.0 Consensus size: 42
1388947 TAAACCAACG
*
1388957 AGCAGACAAAGGGTAAAGAAGTCTCTCGAGTCAAAGTCGACG
1 AGCAGACAAAGGGTAAAGAAGTCTCTCGAGTCAAAGTCGACA
* * * * *
1388999 CGTAGACAAAGGGTAAAGAAGTCTCTTGGGTTAAAG-CTGACA
1 AGCAGACAAAGGGTAAAGAAGTCTCTCGAGTCAAAGTC-GACA
* * *
1389041 AGCAAACAAAGGATAAAGAAGTCTCTCAAGTCAAAGTCGACA
1 AGCAGACAAAGGGTAAAGAAGTCTCTCGAGTCAAAGTCGACA
1389083 GGCAAAATTC
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 66 0.97
43 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (42 bp):
AGCAGACAAAGGGTAAAGAAGTCTCTCGAGTCAAAGTCGACA
Found at i:1389157 original size:42 final size:42
Alignment explanation
Indices: 1389111--1389428 Score: 152
Period size: 42 Copynumber: 7.6 Consensus size: 42
1389101 CAAAGCCAAC
* *
1389111 GGGCAGACGTAA-GGTAAAGAACTCTCCTGAGTTAAAGCTGAT
1 GGGCAGAC-TAAGGGTAAAGAAGTCTCCCGAGTTAAAGCTGAT
* * *
1389153 GGGCA-AATAAGGGATAAAGAAGTCTCCCGAGTCAAAGTTGAT
1 GGGCAGACTAAGGG-TAAAGAAGTCTCCCGAGTTAAAGCTGAT
* *
1389195 AGGCAGACAAAGGGTAAAGAAGTCTCCCGAGTTAAAG-TCGAT
1 GGGCAGACTAAGGGTAAAGAAGTCTCCCGAGTTAAAGCT-GAT
* * * ** * * *
1389237 AGGCAAAC-AAGGGATAAAAAAGTCTGTCGGGTCAAA-ATGGAT
1 GGGCAGACTAAGGG-TAAAGAAGTCTCCCGAGTTAAAGCT-GAT
* * * * ** * * *
1389279 GAGCAGACAAAAGGTAGAGAAGTCTCATGAGTCAAAGC-CAA
1 GGGCAGACTAAGGGTAAAGAAGTCTCCCGAGTTAAAGCTGAT
* * * * *
1389320 GAAGCAGACAAAGGGTAAAAAAATCTCCCGA-TTAAAGCCGAT
1 G-GGCAGACTAAGGGTAAAGAAGTCTCCCGAGTTAAAGCTGAT
** * * * * *
1389362 -GATAGACAAAGGGTAAAGAAGTTTCCTGGGTTAAAG-TGAAC
1 GGGCAGACTAAGGGTAAAGAAGTCTCCCGAGTTAAAGCTG-AT
* *
1389403 AGGCAGA-TAAGGGGTAAAAAAGTCTC
1 GGGCAGACTAA-GGGTAAAGAAGTCTC
1389429 TCGGGTAAAA
Statistics
Matches: 209, Mismatches: 53, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
40 25 0.12
41 26 0.12
42 148 0.71
43 10 0.05
ACGTcount: A:0.40, C:0.15, G:0.28, T:0.17
Consensus pattern (42 bp):
GGGCAGACTAAGGGTAAAGAAGTCTCCCGAGTTAAAGCTGAT
Found at i:1389242 original size:84 final size:83
Alignment explanation
Indices: 1389112--1389485 Score: 274
Period size: 84 Copynumber: 4.5 Consensus size: 83
1389102 AAAGCCAACG
** * * *
1389112 GGCAGACGTAAGGTAAAGAACTCTCCTGAGTTAAAG-CTGATGGGCAAATAAGGGATAAAGAAGT
1 GGCAGACAAAAGGTAAAGAAGTCTCCTGAGTTAAAGTC-GATAGGCAAATAAGGGATAAAAAAGT
*
1389176 CTCCCGAGTCAAAGTTGAT
65 CTCCCGAGTCAAAGTCGAT
* * *
1389195 AGGCAGACAAAGGGTAAAGAAGTCTCCCGAGTTAAAGTCGATAGGCAAACAAGGGATAAAAAAGT
1 -GGCAGACAAAAGGTAAAGAAGTCTCCTGAGTTAAAGTCGATAGGCAAATAAGGGATAAAAAAGT
** * * *
1389260 CTGTCGGGTCAAAATGGAT
65 CTCCCGAGTCAAAGTCGAT
* * * * * * *
1389279 GAGCAGACAAAAGGTAGAGAAGTCTCATGAGTCAAAGCCAAGAAGCAGACA-AAGGG-TAAAAAA
1 G-GCAGACAAAAGGTAAAGAAGTCTCCTGAGTTAAAGTCGATAGGCA-A-ATAAGGGATAAAAAA
* * *
1389342 ATCTCCCGA-TTAAAGCCGAT
63 GTCTCCCGAGTCAAAGTCGAT
** * * * * * *
1389362 GATAGACAAAGGGTAAAGAAGTTTCCTGGGTTAAAGT-GAACAGGCAGATAAGGGGTAAAAAAGT
1 GGCAGACAAAAGGTAAAGAAGTCTCCTGAGTTAAAGTCG-ATAGGCAAATAAGGGATAAAAAAGT
* * * *
1389426 CTCTCGGGTAAAAGTCAAT
65 CTCCCGAGTCAAAGTCGAT
* * * *
1389445 AGGTAGACAAAAGGTAAAAAAATCTCCT-AGGTCAAAGTCGA
1 -GGCAGACAAAAGGTAAAGAAGTCTCCTGA-GTTAAAGTCGA
1389486 CGAGTAGACA
Statistics
Matches: 223, Mismatches: 56, Indels: 22
0.74 0.19 0.07
Matches are distributed among these distances:
80 1 0.00
81 5 0.02
82 45 0.20
83 17 0.08
84 146 0.65
85 8 0.04
86 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.27, T:0.18
Consensus pattern (83 bp):
GGCAGACAAAAGGTAAAGAAGTCTCCTGAGTTAAAGTCGATAGGCAAATAAGGGATAAAAAAGTC
TCCCGAGTCAAAGTCGAT
Found at i:1389497 original size:166 final size:166
Alignment explanation
Indices: 1389199--1389514 Score: 363
Period size: 166 Copynumber: 1.9 Consensus size: 166
1389189 GTTGATAGGC
* *
1389199 AGACAAAGGGTAAAGAAGTCTCCCGAGTTAAAGTCGATAGGCAAACAAGGGATAAAAAAGTCTGT
1 AGACAAAGGGTAAAGAAGTCTCCCGAGTTAAAGTCGACAGGCAAACAAGGGATAAAAAAGTCTCT
** * * *
1389264 CGGGTCAAAATGGATGAGCAGACAAAAGGTAGAGAAGTCTCATGAGTCAAAGCCAAGAAGCAGAC
66 CGGGTCAAAATCAATGAGCAGACAAAAGGTAAAAAAATCTCATGAGTCAAAGCCAAGAAGCAGAC
*
1389329 AAAGGGTAAAAAAATCTCCCGATTAAAGCCGATGAT
131 AAAAGGTAAAAAAATCTCCCGATTAAAGCCGATGAT
* * * * * *
1389365 AGACAAAGGGTAAAGAAGTTTCCTGGGTTAAAGT-GAACAGGCAGATAAGGGGTAAAAAAGTCTC
1 AGACAAAGGGTAAAGAAGTCTCCCGAGTTAAAGTCG-ACAGGCAAACAAGGGATAAAAAAGTCTC
* * * *
1389429 TCGGGT-AAAAGTCAAT-AGGTAGACAAAAGGTAAAAAAATCTCCT-AGGTCAAAGTCGACG-AG
65 TCGGGTCAAAA-TCAATGA-GCAGACAAAAGGTAAAAAAATCTCATGA-GTCAAAG-CCAAGAAG
* * *
1389490 TAGACAAAAGGTAAAGAAGTCTCCC
126 CAGACAAAAGGTAAAAAAATCTCCC
1389515 AGGTCAAAGT
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
165 7 0.06
166 114 0.92
167 3 0.02
ACGTcount: A:0.42, C:0.15, G:0.26, T:0.17
Consensus pattern (166 bp):
AGACAAAGGGTAAAGAAGTCTCCCGAGTTAAAGTCGACAGGCAAACAAGGGATAAAAAAGTCTCT
CGGGTCAAAATCAATGAGCAGACAAAAGGTAAAAAAATCTCATGAGTCAAAGCCAAGAAGCAGAC
AAAAGGTAAAAAAATCTCCCGATTAAAGCCGATGAT
Found at i:1389537 original size:42 final size:41
Alignment explanation
Indices: 1389161--1389543 Score: 213
Period size: 42 Copynumber: 9.1 Consensus size: 41
1389151 ATGGGCAAAT
*
1389161 AAGGGATAAAGAAGTCTCCCGAGTCAAAGTTGAT-AGGCAGACA
1 AAGGG-TAAAGAAGTCTCCCG-GTCAAAGTCGATGA-GCAGACA
* *
1389204 AAGGGTAAAGAAGTCTCCCGAGTTAAAGTCGAT-AGGCAAAC-
1 AAGGGTAAAGAAGTCTCCCG-GTCAAAGTCGATGA-GCAGACA
* * * * *
1389245 AAGGGATAAAAAAGTCTGTCGGGTCAAAATGGATGAGCAGACA
1 AAGGG-TAAAGAAGTCT-CCCGGTCAAAGTCGATGAGCAGACA
* * ** * *
1389288 AAAGGTAGAGAAGTCTCATGAGTCAAAG-CCAAGAAGCAGACA
1 AAGGGTAAAGAAGTCTCCCG-GTCAAAGTCGATG-AGCAGACA
* * * * * *
1389330 AAGGGTAAAAAAATCTCCCGATTAAAGCCGATGA-TAGACA
1 AAGGGTAAAGAAGTCTCCCGGTCAAAGTCGATGAGCAGACA
* * * ** *
1389370 AAGGGTAAAGAAGTTTCCTGGGTTAAAGT-GAACAGGCAGATA
1 AAGGGTAAAGAAGTCTCC-CGGTCAAAGTCGATGA-GCAGACA
* * * * * *
1389412 AGGGGTAAAAAAGTCTCTCGGGTAAAAGTCAAT-AGGTAGACA
1 AAGGGTAAAGAAGTCTC-CCGGTCAAAGTCGATGA-GCAGACA
* * * * * *
1389454 AAAGGTAAAAAAATCTCCTAGGTCAAAGTCGACGAGTAGACA
1 AAGGGTAAAGAAGTCTCC-CGGTCAAAGTCGATGAGCAGACA
* *
1389496 AAAGGTAAAGAAGTCTCCCAGGTCAAAGTTGATGAGCAGACA
1 AAGGGTAAAGAAGTCTCCC-GGTCAAAGTCGATGAGCAGACA
*
1389538 AGGGGT
1 AAGGGT
1389544 CGATGAGCAG
Statistics
Matches: 261, Mismatches: 64, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
40 23 0.09
41 22 0.08
42 201 0.77
43 15 0.06
ACGTcount: A:0.41, C:0.15, G:0.27, T:0.17
Consensus pattern (41 bp):
AAGGGTAAAGAAGTCTCCCGGTCAAAGTCGATGAGCAGACA
Found at i:1389727 original size:187 final size:187
Alignment explanation
Indices: 1389387--1389729 Score: 415
Period size: 187 Copynumber: 1.8 Consensus size: 187
1389377 AAGAAGTTTC
* ** * *
1389387 CTGGGTTAAAGTGAACAGGCAGATAAGGGGTAAAAAAGTCTCTCGGGTAAAAGTCAATAGGTAGA
1 CTGGGTTAAAGTGAACAGGCAGACAAGGGAAAAAAAAGTCTCCCGGGTAAAAGTCAATAGGCAGA
* *
1389452 CAAAAGGTAAAAAAATCTCCTAGGTCAAAGTCGACGAGTAGACAAAAGGTAAAGAAGTCTCCCAG
66 CAAAAGGTAAAAAAATCTCCTAGGTCAAAGTCGACAACTAGACAAAAGGTAAAGAAGTCTCCCAG
* **
1389517 GTCAAAGTTGATGAGCAGACAAGGGGTCGATGAGCAGATAAAGAGAAAGGAATTCTT
131 GTCAAAGTCGACAAGCAGACAAGGGGTCGATGAGCAGATAAAGAGAAAGGAATTCTT
* * *
1389574 CTGGGTTAAAGTCG-ACAGGCAGACAA-GGAAAAAAGAAGTCTCCCGGGTCAAAGTCGATGGGCA
1 CTGGGTTAAAGT-GAACAGGCAGACAAGGGAAAAAA-AAGTCTCCCGGGTAAAAGTCAATAGGCA
** * * * * *
1389637 GACAAGTGGTAAAGAAGTCTCTTTGGTCAAAGTCGACAACTA-A-AAAGGGGGTAAAGAAGTCTC
64 GACAAAAGGTAAAAAAATCTCCTAGGTCAAAGTCGACAACTAGACAAA--AGGTAAAGAAGTCTC
* **
1389700 TCAGGTCAAAGTCGACAAGTTGACAAGGGG
127 CCAGGTCAAAGTCGACAAGCAGACAAGGGG
1389730 CAAAGAAGTC
Statistics
Matches: 129, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
185 3 0.02
186 7 0.05
187 118 0.91
188 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.29, T:0.18
Consensus pattern (187 bp):
CTGGGTTAAAGTGAACAGGCAGACAAGGGAAAAAAAAGTCTCCCGGGTAAAAGTCAATAGGCAGA
CAAAAGGTAAAAAAATCTCCTAGGTCAAAGTCGACAACTAGACAAAAGGTAAAGAAGTCTCCCAG
GTCAAAGTCGACAAGCAGACAAGGGGTCGATGAGCAGATAAAGAGAAAGGAATTCTT
Found at i:1389735 original size:42 final size:42
Alignment explanation
Indices: 1389581--1389836 Score: 178
Period size: 42 Copynumber: 6.1 Consensus size: 42
1389571 CTTCTGGGTT
* * *** * *
1389581 AAAGTCGACAGGCAGACAAGGAAAAAAGAAGTCTCCCGGGTC
1 AAAGTCGACAAGCTGACAAGGGGTAAAGAAGTCTCTCAGGTC
*** * * **
1389623 AAAGTCGATGGGCAGACAAGTGGTAAAGAAGTCTCTTTGGTC
1 AAAGTCGACAAGCTGACAAGGGGTAAAGAAGTCTCTCAGGTC
* *
1389665 AAAGTCGACAA-CTAAAAAGGGGGTAAAGAAGTCTCTCAGGTC
1 AAAGTCGACAAGCTGACAA-GGGGTAAAGAAGTCTCTCAGGTC
* * *
1389707 AAAGTCGACAAGTTGACAAGGGGCAAAGAAGTCTCTCAGGTT
1 AAAGTCGACAAGCTGACAAGGGGTAAAGAAGTCTCTCAGGTC
* *** * * *
1389749 AAAGTTGATGGGCAGACAAAGGATAAAGAAGTCTCTC-GAGTC
1 AAAGTCGACAAGCTGACAAGGGGTAAAGAAGTCTCTCAG-GTC
* * * *
1389791 AAA-ACTGACGAG-TAGACAAAGGATAAAGAAGTCTCTCAGGTC
1 AAAGTC-GACAAGCT-GACAAGGGGTAAAGAAGTCTCTCAGGTC
1389833 AAAG
1 AAAG
1389837 CTAATAGGTA
Statistics
Matches: 169, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
41 5 0.03
42 159 0.94
43 5 0.03
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.17
Consensus pattern (42 bp):
AAAGTCGACAAGCTGACAAGGGGTAAAGAAGTCTCTCAGGTC
Found at i:1389792 original size:126 final size:126
Alignment explanation
Indices: 1389605--1389836 Score: 294
Period size: 126 Copynumber: 1.8 Consensus size: 126
1389595 GACAAGGAAA
* * * *
1389605 AAAGAAGTCTCCCGGGTCAAAGTCGATGGGCAGACAAGTGGTAAAGAAGTCTCTTTGGTC-AAAG
1 AAAGAAGTCTCCCAGGTCAAAGTCGATGGGCAGACAAGTGATAAAGAAGTCTCTTCGGTCAAAAC
*
1389669 TCGACAACTA-A-AAAGGGGGTAAAGAAGTCTCTCAGGTCAAAGTCGACAAGTTGACAAGGGGC
66 T-GACAACTAGACAAA--GGATAAAGAAGTCTCTCAGGTCAAAGTCGACAAGTTGACAAGGGGC
* * *
1389731 AAAGAAGTCTCTCAGGTTAAAGTTGATGGGCAGACAAAG-GATAAAGAAGTCTC-TCGAGTCAAA
1 AAAGAAGTCTCCCAGGTCAAAGTCGATGGGCAGAC-AAGTGATAAAGAAGTCTCTTCG-GTCAAA
* *
1389794 ACTGACGAGTAGACAAAGGATAAAGAAGTCTCTCAGGTCAAAG
64 ACTGACAACTAGACAAAGGATAAAGAAGTCTCTCAGGTCAAAG
1389837 CTAATAGGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
125 2 0.02
126 78 0.86
127 8 0.09
128 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.19
Consensus pattern (126 bp):
AAAGAAGTCTCCCAGGTCAAAGTCGATGGGCAGACAAGTGATAAAGAAGTCTCTTCGGTCAAAAC
TGACAACTAGACAAAGGATAAAGAAGTCTCTCAGGTCAAAGTCGACAAGTTGACAAGGGGC
Found at i:1389854 original size:42 final size:42
Alignment explanation
Indices: 1389688--1389908 Score: 173
Period size: 42 Copynumber: 5.3 Consensus size: 42
1389678 AAAAAGGGGG
* * * * *
1389688 TAAAGAAGTCTCTCAGGTCAAAG-TCGACAAGTTGACAAGGGG
1 TAAAGAAGTCTCTCAGGTCAAAGCT-GATAGGTAGACAAAGGA
* * * * *
1389730 CAAAGAAGTCTCTCAGGTTAAAGTTGATGGGCAGACAAAGGA
1 TAAAGAAGTCTCTCAGGTCAAAGCTGATAGGTAGACAAAGGA
* *
1389772 TAAAGAAGTCTCTC-GAGTCAAAACTGA-CGAGTAGACAAAGGA
1 TAAAGAAGTCTCTCAG-GTCAAAGCTGATAG-GTAGACAAAGGA
* * * *
1389814 TAAAGAAGTCTCTCAGGTCAAAGCTAATAGGTATAGAAAGGG
1 TAAAGAAGTCTCTCAGGTCAAAGCTGATAGGTAGACAAAGGA
* * * *
1389856 TGAAGAAGTCTCT-TGAGTCAAAACTGACAGGTAGACGAAAGG-
1 TAAAGAAGTCTCTCAG-GTCAAAGCTGATAGGTAGAC-AAAGGA
*
1389898 TAAAAAAGTCT
1 TAAAGAAGTCT
1389909 TTTGGGTCAA
Statistics
Matches: 142, Mismatches: 30, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
41 3 0.02
42 131 0.92
43 8 0.06
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.19
Consensus pattern (42 bp):
TAAAGAAGTCTCTCAGGTCAAAGCTGATAGGTAGACAAAGGA
Found at i:1389854 original size:84 final size:82
Alignment explanation
Indices: 1389688--1390088 Score: 231
Period size: 84 Copynumber: 4.8 Consensus size: 82
1389678 AAAAAGGGGG
* * * * *
1389688 TAAAGAAGTCTCTC-AGGTC-AAAGTCGACAAGTTGACAAGGGGCAAAGAAGTCTCTCAGGTTAA
1 TAAAGAAGTCTCTCGA-GTCAAAACT-GAC-AGTAGACAA-AGGTAAAGAAGTCTCTCAGGTCAA
* * *
1389751 AGTTGATGGGCAGACAAAGGA
62 AGCTAATAGGCAGACAAAGGA
1389772 TAAAGAAGTCTCTCGAGTCAAAACTGACGAGTAGACAAAGGATAAAGAAGTCTCTCAGGTCAAAG
1 TAAAGAAGTCTCTCGAGTCAAAACTGAC-AGTAGACAAAGG-TAAAGAAGTCTCTCAGGTCAAAG
* * * *
1389837 CTAATAGGTATAGAAAGGG
64 CTAATAGGCAGACAAAGGA
* * * * **
1389856 TGAAGAAGTCTCTTGAGTCAAAACTGACAGGTAGACGAAAGGTAAAAAAGTCTTTTGGGTCAAAG
1 TAAAGAAGTCTCTCGAGTCAAAACTGACA-GTAGAC-AAAGGTAAAGAAGTCTCTCAGGTCAAAG
** ** **
1389921 CCGACGGGCAGATGAA-GA
64 CTAATAGGCAGACAAAGGA
* * * * * * * * *
1389939 GTAAAGAAGTCTCCCGAGTC-AAAGTCGATAGACAGATGAATGGTAAAGAAGTTTGCTGA-GTAA
1 -TAAAGAAGTCTCTCGAGTCAAAACT-GACAG-TAGA-CAAAGGTAAAGAAGTCT-CTCAGGTCA
* * ** *
1390002 AAGCTGACTAGCCAG-TGAAGGG
61 AAGCT-AATAGGCAGACAAAGGA
* * *
1390024 TAAAGAAGTCTCTCGAGTCAAAGCTGACAAGCCA-ACAAAAGGTATAGAAGTCTCTCAGGTCAAA
1 TAAAGAAGTCTCTCGAGTCAAAACTGAC-AG-TAGAC-AAAGGTAAAGAAGTCTCTCAGGTCAAA
1390088 G
63 G
1390089 TCGATGAGCA
Statistics
Matches: 241, Mismatches: 60, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
83 12 0.05
84 206 0.85
85 23 0.10
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.19
Consensus pattern (82 bp):
TAAAGAAGTCTCTCGAGTCAAAACTGACAGTAGACAAAGGTAAAGAAGTCTCTCAGGTCAAAGCT
AATAGGCAGACAAAGGA
Found at i:1389918 original size:42 final size:42
Alignment explanation
Indices: 1389762--1389961 Score: 165
Period size: 42 Copynumber: 4.8 Consensus size: 42
1389752 GTTGATGGGC
1389762 AGACAAAGGATAAAGAAGTCTCTCGAGTCAAAACTGAC-GAGT
1 AGACAAAGGATAAAGAAGTCTCTCGAGTCAAAACTGACAG-GT
* * *
1389804 AGACAAAGGATAAAGAAGTCTCTC-AGGTCAAAGCTAATAGGT
1 AGACAAAGGATAAAGAAGTCTCTCGA-GTCAAAACTGACAGGT
* * * * *
1389846 ATAGAAAGGGTGAAGAAGTCTCTTGAGTCAAAACTGACAGGT
1 AGACAAAGGATAAAGAAGTCTCTCGAGTCAAAACTGACAGGT
* * * * * * * *
1389888 AGACGAAAGG-TAAAAAAGTCTTTTGGGTCAAAGCCGACGGGC
1 AGAC-AAAGGATAAAGAAGTCTCTCGAGTCAAAACTGACAGGT
** *
1389930 AGATGAA-GAGTAAAGAAGTCTCCCGAGTCAAA
1 AGACAAAGGA-TAAAGAAGTCTCTCGAGTCAAA
1389962 GTCGATAGAC
Statistics
Matches: 124, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 113 0.91
43 7 0.06
ACGTcount: A:0.41, C:0.15, G:0.27, T:0.18
Consensus pattern (42 bp):
AGACAAAGGATAAAGAAGTCTCTCGAGTCAAAACTGACAGGT
Found at i:1389962 original size:42 final size:42
Alignment explanation
Indices: 1389914--1390172 Score: 129
Period size: 42 Copynumber: 6.2 Consensus size: 42
1389904 AGTCTTTTGG
*
1389914 GTCAAAGCCGACGGGCAGATGAAGAGTAAAGAAGTCTCCCGA
1 GTCAAAGCCGACAGGCAGATGAAGAGTAAAGAAGTCTCCCGA
* * * * * *
1389956 GTCAAAGTCGATAGACAGATGAATG-GTAAAGAAGTTTGCTGA
1 GTCAAAGCCGACAGGCAGATGAA-GAGTAAAGAAGTCTCCCGA
* * * * *
1389998 GTAAAAGCTGACTAGCCAG-TGAAGGGTAAAGAAGTCTCTCGA
1 GTCAAAGCCGAC-AGGCAGATGAAGAGTAAAGAAGTCTCCCGA
* * * * * *
1390040 GTCAAAGCTGACAAGCCA-A-CAAAAGGTATAGAAGTCTCTC-A
1 GTCAAAGCCGAC-AGGCAGATGAAGA-GTAAAGAAGTCTCCCGA
* * * * ** *
1390081 GGTCAAAGTCGA-TGAGCAAATGAA-AGGTAAAAAAGTCTCTTGG
1 -GTCAAAGCCGACAG-GCAGATGAAGA-GTAAAGAAGTCTCCCGA
* * ** *
1390124 GTCAAAGCCGACGGGCAAAAAAAG-GTAAAAAAGTCTCCCGA
1 GTCAAAGCCGACAGGCAGATGAAGAGTAAAGAAGTCTCCCGA
1390165 GTCAAAGC
1 GTCAAAGC
1390173 TAATGGGTAG
Statistics
Matches: 167, Mismatches: 38, Indels: 25
0.73 0.17 0.11
Matches are distributed among these distances:
40 1 0.01
41 28 0.17
42 129 0.77
43 9 0.05
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (42 bp):
GTCAAAGCCGACAGGCAGATGAAGAGTAAAGAAGTCTCCCGA
Found at i:1390110 original size:84 final size:82
Alignment explanation
Indices: 1389731--1390131 Score: 253
Period size: 84 Copynumber: 4.8 Consensus size: 82
1389721 GACAAGGGGC
* * * * * *
1389731 AAAGAAGTCTCTCAGGTTAAAGTTGATGGGCAGA-CAAAGGATAAAGAAGTCTCTCGAGTCAAAA
1 AAAGAAGTCTCTCAGGTCAAAG-CGATGAGCAAATGAAAGG-TAAAGAAGTCTCTCGAGTCAAAG
*
1389795 CTGACGAGTAGAC-AAAGGAT
64 CTGAC-AGCAGACGAAAGG-T
* ** * *
1389815 AAAGAAGTCTCTCAGGTCAAAGCTAAT-AG-GTATAGAAAGGGTGAAGAAGTCTCTTGAGTCAAA
1 AAAGAAGTCTCTCAGGTCAAAGC-GATGAGCAAAT-GAAA-GGTAAAGAAGTCTCTCGAGTCAAA
* *
1389878 ACTGACAGGTAGACGAAAGGT
63 GCTGACA-GCAGACGAAAGGT
* * ** * * * *
1389899 AAAAAAGTCTTTTGGGTCAAAGCCGACGGGCAGATG-AAGAGTAAAGAAGTCTCCCGAGTCAAAG
1 AAAGAAGTCTCTCAGGTCAAAG-CGATGAGCAAATGAAAG-GTAAAGAAGTCTCTCGAGTCAAAG
* * *
1389963 -TCGATAGACAGATGAATGGT
64 CT-GACAG-CAGACGAAAGGT
* * * * * *
1389983 AAAGAAGTTTGCTGA-GTAAAAGCTGACT-AGCCAGTGAAGGGTAAAGAAGTCTCTCGAGTCAAA
1 AAAGAAGTCT-CTCAGGTCAAAGC-GA-TGAGCAAATGAAAGGTAAAGAAGTCTCTCGAGTCAAA
*
1390046 GCTGACAAGCCA-ACAAAAGGT
63 GCTGAC-AG-CAGACGAAAGGT
* * * *
1390067 ATAGAAGTCTCTCAGGTCAAAGTCGATGAGCAAATGAAAGGTAAAAAAGTCTCTTGGGTCAAAGC
1 AAAGAAGTCTCTCAGGTCAAAG-CGATGAGCAAATGAAAGGTAAAGAAGTCTCTCGAGTCAAAGC
1390132 CGACGGGCAA
Statistics
Matches: 242, Mismatches: 54, Indels: 42
0.72 0.16 0.12
Matches are distributed among these distances:
82 1 0.00
83 10 0.04
84 210 0.87
85 19 0.08
86 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.19
Consensus pattern (82 bp):
AAAGAAGTCTCTCAGGTCAAAGCGATGAGCAAATGAAAGGTAAAGAAGTCTCTCGAGTCAAAGCT
GACAGCAGACGAAAGGT
Found at i:1390171 original size:83 final size:83
Alignment explanation
Indices: 1390022--1390295 Score: 266
Period size: 83 Copynumber: 3.3 Consensus size: 83
1390012 GCCAGTGAAG
* * * * * *
1390022 GGTAAAGAAGTCTCTCGAGTCAAAGCTGACAAGCCAACAAAAGGTATAGAAGTCTCTC-AGGTCA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCCGAC-GGCCAACAAAAGGTAAAAAAGTCTCTCGA-GTCA
* *
1390086 AAGTCGATGAGCAAATGAAA
64 AAGTCGATGGGCAAATAAAA
* * * *
1390106 GGTAAAAAAGTCTCTTGGGTCAAAGCCGACGGGCAAAAAAAGGTAAAAAAGTCTCCCGAGTCAAA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCCGACGGCCAACAAAAGGTAAAAAAGTCTCTCGAGTCAAA
* * * *
1390171 G-CTAATGGGTAGACAAAA
66 GTC-GATGGGCAAATAAAA
* * * * * * *
1390189 GG-AAAAAAGTCTTTCAGGTCAAAGCCGACGGACCGACAAAGGGTAAAAAAGTCTATTGGGTCAA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCCGACGG-CCAACAAAAGGTAAAAAAGTCTCTCGAGTCAA
*
1390253 AGTTGATGGGCAAATAAAA
65 AGTCGATGGGCAAATAAAA
*
1390272 GATAAAAAAGTCTCTCGGGTCAAA
1 GGTAAAAAAGTCTCTCGGGTCAAA
1390296 TTCAATGGGC
Statistics
Matches: 150, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
82 27 0.18
83 77 0.51
84 46 0.31
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.18
Consensus pattern (83 bp):
GGTAAAAAAGTCTCTCGGGTCAAAGCCGACGGCCAACAAAAGGTAAAAAAGTCTCTCGAGTCAAA
GTCGATGGGCAAATAAAA
Found at i:1390190 original size:42 final size:42
Alignment explanation
Indices: 1390022--1390503 Score: 282
Period size: 42 Copynumber: 11.5 Consensus size: 42
1390012 GCCAGTGAAG
* * * *
1390022 GGTAAAGAAGTCTCTCGAGTCAAAGCTGACA-AGCCA-ACAAAA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCT-A-ATGGGCAGACAAAA
* * * * * * **
1390064 GGTATAGAAGTCTCTCAGGTCAAAG-TCGATGAGCAAATGAAA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCT-AATGGGCAGACAAAA
* ** * *
1390106 GGTAAAAAAGTCTCTTGGGTCAAAGCCGACGGGCA-AAAAAA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCTAATGGGCAGACAAAA
* * *
1390147 GGTAAAAAAGTCTCCCGAGTCAAAGCTAATGGGTAGACAAAA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCTAATGGGCAGACAAAA
* * ** * * * *
1390189 GG-AAAAAAGTCTTTCAGGTCAAAGCCGACGGACCGACAAAG
1 GGTAAAAAAGTCTCTCGGGTCAAAGCTAATGGGCAGACAAAA
* * * * * *
1390230 GGTAAAAAAGTCTATTGGGTCAAAGTTGATGGGCAAATAAAA
1 GGTAAAAAAGTCTCTCGGGTCAAAGCTAATGGGCAGACAAAA
* * *
1390272 GATAAAAAAGTCTCTCGGGTCAAA-TTCAATGGGCAGACAAAG
1 GGTAAAAAAGTCTCTCGGGTCAAAGCT-AATGGGCAGACAAAA
* * * *
1390314 GGTAAAAAAGTCTTTCGGGTTAGAGCTAAT-GGCAGACAAAG
1 GGTAAAAAAGTCTCTCGGGTCAAAGCTAATGGGCAGACAAAA
* * ** * * * *
1390355 GGTAAAAAGGTCTCCCTAGTCAAAGTCGACA--AGCTGACAAAG
1 GGTAAAAAAGTCTCTCGGGTCAAAG-CTA-ATGGGCAGACAAAA
** * * * * *
1390397 GGTAAAAAAGTCTCTCATGTTAAAGCTGATGGACTGACAAAG
1 GGTAAAAAAGTCTCTCGGGTCAAAGCTAATGGGCAGACAAAA
* * *
1390439 GGTAAAAAAGTCT-TTGGGATCAAAGCTAATGAGCAAACAAAA
1 GGTAAAAAAGTCTCTCGGG-TCAAAGCTAATGGGCAGACAAAA
* *
1390481 AGTAAAAAAGTCTCTGGGGTCAA
1 GGTAAAAAAGTCTCTCGGGTCAA
1390504 TGCCAGCATA
Statistics
Matches: 335, Mismatches: 92, Indels: 26
0.74 0.20 0.06
Matches are distributed among these distances:
40 2 0.01
41 99 0.30
42 228 0.68
43 6 0.02
ACGTcount: A:0.41, C:0.16, G:0.25, T:0.19
Consensus pattern (42 bp):
GGTAAAAAAGTCTCTCGGGTCAAAGCTAATGGGCAGACAAAA
Found at i:1390352 original size:125 final size:124
Alignment explanation
Indices: 1390106--1390367 Score: 321
Period size: 125 Copynumber: 2.1 Consensus size: 124
1390096 GCAAATGAAA
* *
1390106 GGTAAAAAAGTCTCTTGGGTCAAAGCCGACGGGCAAAAAAAGGTAAAAAAGTCTCCCGAGTCAAA
1 GGTAAAAAAGTCTATTGGGTCAAAGCCGACGGGCAAAAAAAGATAAAAAAGTCTCCCGAGTCAAA
* * *
1390171 GCTAATGGGTAGACAAAAGGAAAAAAGTCTTTCAGGTCAAAGCCGACGGACCGACAAAG
66 GCTAATGGGCAGACAAAAGGAAAAAAGTCTTTCAGGTCAAAGCCAACGGACAGACAAAG
** * * *
1390230 GGTAAAAAAGTCTATTGGGTCAAAGTTGATGGGCAAATAAAAGATAAAAAAGTCTCTCGGGTCAA
1 GGTAAAAAAGTCTATTGGGTCAAAGCCGACGGGCAAA-AAAAGATAAAAAAGTCTCCCGAGTCAA
* * * * * * *
1390295 A-TTCAATGGGCAGACAAAGGGTAAAAAAGTCTTTCGGGTTAGAGCTAATGG-CAGACAAAG
65 AGCT-AATGGGCAGACAAAAGG-AAAAAAGTCTTTCAGGTCAAAGCCAACGGACAGACAAAG
*
1390355 GGTAAAAAGGTCT
1 GGTAAAAAAGTCT
1390368 CCCTAGTCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
124 34 0.29
125 60 0.51
126 23 0.20
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.18
Consensus pattern (124 bp):
GGTAAAAAAGTCTATTGGGTCAAAGCCGACGGGCAAAAAAAGATAAAAAAGTCTCCCGAGTCAAA
GCTAATGGGCAGACAAAAGGAAAAAAGTCTTTCAGGTCAAAGCCAACGGACAGACAAAG
Found at i:1395803 original size:52 final size:52
Alignment explanation
Indices: 1395725--1395925 Score: 332
Period size: 52 Copynumber: 3.9 Consensus size: 52
1395715 CGAAATATGA
*
1395725 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
*
1395777 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
* *
1395829 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
**
1395881 AAATTTGCCTGCATGTATCGATACAAAG-ATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGTAT-AGTGTATCGATACA
1395926 ATGTATCGAT
Statistics
Matches: 141, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
51 2 0.01
52 139 0.99
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
Found at i:1395932 original size:13 final size:13
Alignment explanation
Indices: 1395914--1395938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1395904 CAAAGATCAG
1395914 TGTATCGATACAA
1 TGTATCGATACAA
1395927 TGTATCGATACA
1 TGTATCGATACA
1395939 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1396016 original size:33 final size:33
Alignment explanation
Indices: 1395979--1396045 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1395969 AGTAGCTTAA
1395979 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
1396012 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
1396045 A
1 A
1396046 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:1396019 original size:13 final size:13
Alignment explanation
Indices: 1396001--1396025 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1395991 CAAAAAAATA
1396001 TGTATCGATACAT
1 TGTATCGATACAT
1396014 TGTATCGATACA
1 TGTATCGATACA
1396026 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1405008 original size:15 final size:15
Alignment explanation
Indices: 1404988--1405019 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
1404978 GTGTGTATGC
1404988 ATGCAAAAAAGAAAA
1 ATGCAAAAAAGAAAA
1405003 ATGCAAAAAAGAAAA
1 ATGCAAAAAAGAAAA
1405018 AT
1 AT
1405020 AAACCACGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.72, C:0.06, G:0.12, T:0.09
Consensus pattern (15 bp):
ATGCAAAAAAGAAAA
Found at i:1408432 original size:13 final size:13
Alignment explanation
Indices: 1408414--1408439 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1408404 CATTTTGGGA
1408414 TGTATCGATACAT
1 TGTATCGATACAT
1408427 TGTATCGATACAT
1 TGTATCGATACAT
1408440 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1408436 original size:33 final size:32
Alignment explanation
Indices: 1408394--1408457 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
1408384 TACAAGCCAA
*
1408394 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
1408427 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
1408458 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:1408546 original size:20 final size:21
Alignment explanation
Indices: 1408499--1408551 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1408489 GCTAATCACC
*
1408499 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
1408520 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
1408540 TGTATCGATACA
1 TGTATCGATACA
1408552 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:1408557 original size:13 final size:13
Alignment explanation
Indices: 1408539--1408563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1408529 ACATTTGGTC
1408539 ATGTATCGATACA
1 ATGTATCGATACA
1408552 ATGTATCGATAC
1 ATGTATCGATAC
1408564 TATGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1408596 original size:20 final size:19
Alignment explanation
Indices: 1408573--1408611 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
1408563 CTATGCATTA
1408573 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
1408593 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
1408612 ATTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:1411059 original size:13 final size:13
Alignment explanation
Indices: 1411041--1411079 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1411031 TATAATCCCT
1411041 TTGTATCGATACA
1 TTGTATCGATACA
1411054 TTGTATCGATACA
1 TTGTATCGATACA
*
1411067 ATGTATCGATACA
1 TTGTATCGATACA
1411080 GAGAATGCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1417403 original size:20 final size:19
Alignment explanation
Indices: 1417380--1417418 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
1417370 CTTTGCATTA
1417380 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
1417400 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
1417419 ATTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:1418686 original size:79 final size:79
Alignment explanation
Indices: 1418572--1418799 Score: 255
Period size: 78 Copynumber: 2.9 Consensus size: 79
1418562 CCCTCGAAAT
* * * *
1418572 ACAAGGTTGGAGTA-CCTTGAGATGAAAATTTTAATATTTTGAAAATAAAAAAAGGGTTGGAGTA
1 ACAAGGTTAGAGTATCCTCGAGATGAAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTA
** *
1418636 TCCCCTTGAAAATA
66 TCCCCTCAAAAAAA
** * * *
1418650 ACGGGGTTGGAGTATCAC-CGAGATAAAAAATTTAATATTTTGGAAATAAAAATAGGGTTGGAGT
1 ACAAGGTTAGAGTATC-CTCGAGATGAAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGT
1418714 AT-CCCTCAAAAAAA
65 ATCCCCTCAAAAAAA
* * * ** * *
1418728 ATAAGGTTAGAGTGTCCTCGAGATGGAAAATTTAATATTTCAAAAATAAAAATGGGGTTTGAGTA
1 ACAAGGTTAGAGTATCCTCGAGATGAAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTA
1418793 TCCCCTC
66 TCCCCTC
1418800 TTGATTTTTG
Statistics
Matches: 124, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 1 0.01
78 73 0.59
79 49 0.40
80 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.29
Consensus pattern (79 bp):
ACAAGGTTAGAGTATCCTCGAGATGAAAAATTTAATATTTTGAAAATAAAAATAGGGTTGGAGTA
TCCCCTCAAAAAAA
Found at i:1423074 original size:23 final size:23
Alignment explanation
Indices: 1423048--1423093 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
1423038 TTGACTTTAT
*
1423048 ATACTTGTGTTAATACTATTAGA
1 ATACATGTGTTAATACTATTAGA
*
1423071 ATACATGTGTTTATACTATTAGA
1 ATACATGTGTTAATACTATTAGA
1423094 GTATGGCTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (23 bp):
ATACATGTGTTAATACTATTAGA
Found at i:1423736 original size:16 final size:16
Alignment explanation
Indices: 1423712--1423742 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1423702 ATTATTTATT
1423712 TTTGATAAATATTTAA
1 TTTGATAAATATTTAA
*
1423728 TTTGGTAAATATTTA
1 TTTGATAAATATTTA
1423743 TTTAGACAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (16 bp):
TTTGATAAATATTTAA
Found at i:1426658 original size:55 final size:55
Alignment explanation
Indices: 1426599--1426705 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
1426589 GAATTGCCGT
*
1426599 ACCACTACTCTACATGGCAAAAACAA-TAGGAATGAGAGTACCTAAGCATAGTGCA
1 ACCACTACTCTACATGGCAAAAACAATTA-AAATGAGAGTACCTAAGCATAGTGCA
* * * * *
1426654 ACCACTACTCTACATGGTAGAACCAATTAAAATTAGAGTAGCTAAGCATAGT
1 ACCACTACTCTACATGGCAAAAACAATTAAAATGAGAGTACCTAAGCATAGT
1426706 ATCTAGAGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 43 0.96
56 2 0.04
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (55 bp):
ACCACTACTCTACATGGCAAAAACAATTAAAATGAGAGTACCTAAGCATAGTGCA
Found at i:1429285 original size:81 final size:79
Alignment explanation
Indices: 1429017--1429321 Score: 257
Period size: 81 Copynumber: 3.8 Consensus size: 79
1429007 TCCCTAGGGG
* * * *
1429017 TACTCTAACTCTATCTCTCTGAA-GGGATACTCCAATGCCA-TTTTCTTCCAAAAAATCTTGAAT
1 TACTCTAACTCCATCTCTCTAAAGGGGATACTCCAATACCATTTTTCTTACAAAAAATCTTGAAT
*
1429080 TTATATTCTTAAGGA
66 TTACATTCTT-AGGA
* ** * ** *
1429095 TACTCTAACTCTATCTCT-TTGAGGGGATACTTCAATATTATTTTTCTTACAAATAATCTTGAAT
1 TACTCTAACTCCATCTCTCTAAAGGGGATACTCCAATACCATTTTTCTTACAAAAAATCTTGAAT
*
1429159 TTACATTCTCAGGGA
66 TTACATTCTTA-GGA
* * * ** * *
1429174 TACTCCAACCCCATC-CTTCCAAAAAAGGATACTCCAACT-CCATTTTTCTTAAAAAAAATCATG
1 TACTCTAACTCCATCTC-T-CTAAAGGGGATACTCCAA-TACCATTTTTCTTACAAAAAATCTTG
*
1429237 AATTTACCTTCTTAGGAA
63 AATTTACATTCTTAGG-A
* * *
1429255 TACTCTAACACCATCTCTCTAAAGGGGGATACTCTAA-ACCCATTTTT-ATACAAAAAGA-CTTG
1 TACTCTAACTCCATCTCTCTAAA-GGGGATACTCCAATA-CCATTTTTCTTACAAAAA-ATCTTG
1429317 AATTT
63 AATTT
1429322 TATTTTAGAT
Statistics
Matches: 179, Mismatches: 35, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
77 2 0.01
78 33 0.18
79 45 0.25
80 21 0.12
81 76 0.42
82 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (79 bp):
TACTCTAACTCCATCTCTCTAAAGGGGATACTCCAATACCATTTTTCTTACAAAAAATCTTGAAT
TTACATTCTTAGGA
Found at i:1432688 original size:19 final size:19
Alignment explanation
Indices: 1432661--1432698 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1432651 ACGATAATTT
*
1432661 CAGTGTTGATAACTTATTC
1 CAGTATTGATAACTTATTC
*
1432680 CAGTATTGATAATTTATTC
1 CAGTATTGATAACTTATTC
1432699 ACTTCGTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (19 bp):
CAGTATTGATAACTTATTC
Found at i:1434239 original size:15 final size:16
Alignment explanation
Indices: 1434207--1434245 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
1434197 TTTTTTAATA
* *
1434207 TTTTAAAAGAGAGTTT
1 TTTTAAAAGAAAGATT
1434223 TTTTAAAA-AAAGATT
1 TTTTAAAAGAAAGATT
1434238 TTTTAAAA
1 TTTTAAAA
1434246 TACAAAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (16 bp):
TTTTAAAAGAAAGATT
Found at i:1437749 original size:51 final size:52
Alignment explanation
Indices: 1437687--1437804 Score: 161
Period size: 52 Copynumber: 2.3 Consensus size: 52
1437677 CTGAAAAGAA
1437687 AATGTATCGATACATTCT-GGG-TTTTAACCCAAATGTATCAATACATT-TTT
1 AATGTATCGATACATT-TAGGGTTTTTAACCCAAATGTATCAATACATTCTTT
* * *
1437737 CATTGTATCGATACATTTAGGGTTTTTGACCCAAATGTATCGATACATTCTTT
1 -AATGTATCGATACATTTAGGGTTTTTAACCCAAATGTATCAATACATTCTTT
*
1437790 AATGTATTGATACAT
1 AATGTATCGATACAT
1437805 GCAAGCTATT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
50 1 0.02
51 18 0.31
52 37 0.63
53 3 0.05
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.41
Consensus pattern (52 bp):
AATGTATCGATACATTTAGGGTTTTTAACCCAAATGTATCAATACATTCTTT
Found at i:1438162 original size:13 final size:13
Alignment explanation
Indices: 1438144--1438170 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1438134 ACATATTGCT
1438144 TTGTATCGATACA
1 TTGTATCGATACA
1438157 TTGTATCGATACA
1 TTGTATCGATACA
1438170 T
1 T
1438171 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1438167 original size:33 final size:32
Alignment explanation
Indices: 1438125--1438188 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
1438115 CACACCTAGA
*
1438125 TGTATCGATACATATTGCTTTGTATCGATACAT
1 TGTATCGATACATATT-CATTGTATCGATACAT
*
1438158 TGTATCGATACATGTTCATTGTATCGATACA
1 TGTATCGATACATATTCATTGTATCGATACA
1438189 CACTAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATATTCATTGTATCGATACAT
Found at i:1441420 original size:79 final size:79
Alignment explanation
Indices: 1441308--1441528 Score: 202
Period size: 79 Copynumber: 2.8 Consensus size: 79
1441298 TTTACCATTG
* * **
1441308 GGGATACTCTAACCCATCATTTTCGAGAAGATACTCCAATCTCGTTTTTATCTCTAAAATATTAA
1 GGGATACTCTAACCCGTTATTTTCGAGGGGATACTCCAATCTCGTTTTTAT-TCTAAAATATTAA
*
1441373 AATCTTCA-TCTCG-
65 AATCTTCACTATCGA
* * * *
1441386 TGGATACTTTAACCCTGTTATTTTCGAGGGGATACTCCAA-CTCTATTTTTATTTTCAAAATA-T
1 GGGATACTCTAACCC-GTTATTTTCGAGGGGATACTCCAATCTC-GTTTTTATTCT-AAAATATT
* * *
1441449 CAATTTTTCACTATCGA
63 AAAATCTTCACTATCGA
* *
1441466 GGGCATACTCTAATCCCG-T-TTTTCTGAGGGGATACTCTAATCCCGTTTTTATTTCTAAAATAT
1 GGG-ATACTCTAA-CCCGTTATTTTC-GAGGGGATACTCCAATCTCGTTTTTA-TTCTAAAATAT
1441529 AAATTTTTTC
Statistics
Matches: 114, Mismatches: 18, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
78 26 0.23
79 42 0.37
80 29 0.25
81 14 0.12
82 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (79 bp):
GGGATACTCTAACCCGTTATTTTCGAGGGGATACTCCAATCTCGTTTTTATTCTAAAATATTAAA
ATCTTCACTATCGA
Found at i:1441502 original size:27 final size:27
Alignment explanation
Indices: 1441464--1441515 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
1441454 TTTCACTATC
1441464 GAGGGCATACTCTAATCCCGTTTTTCT
1 GAGGGCATACTCTAATCCCGTTTTTCT
*
1441491 GAGGGGATACTCTAATCCCGTTTTT
1 GAGGGCATACTCTAATCCCGTTTTT
1441516 ATTTCTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
GAGGGCATACTCTAATCCCGTTTTTCT
Found at i:1441595 original size:24 final size:26
Alignment explanation
Indices: 1441546--1441595 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
1441536 TTCACCATTG
1441546 GGGATACTCCAACCCCATCACTTTCAAA
1 GGGATACTCCAACCCCAT--CTTTCAAA
1441574 GGGATACTCCAA-CCCAT-TTTCA
1 GGGATACTCCAACCCCATCTTTCA
1441596 CTTTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.23
27 5 0.23
28 12 0.55
ACGTcount: A:0.30, C:0.34, G:0.12, T:0.24
Consensus pattern (26 bp):
GGGATACTCCAACCCCATCTTTCAAA
Found at i:1441640 original size:79 final size:79
Alignment explanation
Indices: 1441494--1441642 Score: 180
Period size: 80 Copynumber: 1.9 Consensus size: 79
1441484 TTTTTCTGAG
* * * * *
1441494 GGGATACTCTAATCCCGTTTTTATTTCTAAAATATAAATTTTTTCACCATTGGGGATACTCCAAC
1 GGGATACTCCAATCCCATTTTCATTTCTAAAATATAAATTTTTTCACCA-TAGGGATACCCCAAC
1441559 CCCATCACTTTCAAA
65 CCCATCACTTTCAAA
1441574 GGGATACTCCAA-CCCATTTTCACTTT-TAAAATATTAAATTTTTTCATCTCA-AGGG-TACCCC
1 GGGATACTCCAATCCCATTTTCA-TTTCTAAAATA-TAAATTTTTTCA-C-CATAGGGATACCCC
1441635 AACCCCAT
62 AACCCCAT
1441643 ATTCCGAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
79 28 0.47
80 29 0.48
81 1 0.02
82 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (79 bp):
GGGATACTCCAATCCCATTTTCATTTCTAAAATATAAATTTTTTCACCATAGGGATACCCCAACC
CCATCACTTTCAAA
Found at i:1442162 original size:20 final size:20
Alignment explanation
Indices: 1442137--1442188 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1442127 TCACAATTTA
* *
1442137 TATCGATACGTTATTT-ATTG
1 TATCGATACATT-TTTCAATG
1442157 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
1442177 TATCGATACATT
1 TATCGATACATT
1442189 CAGGCATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:1444663 original size:79 final size:79
Alignment explanation
Indices: 1444492--1444712 Score: 313
Period size: 79 Copynumber: 2.8 Consensus size: 79
1444482 TTTCATCTCA
* * *
1444492 GGGATACTCCAACCCCGGTTTTATTTCCAAAAC-CTCAATTTTTCATAATCGGGGAT-CTCCAAT
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACAC-CAATTTTTCACAATTGGGGATACTCCAAC
1444555 CCCGTTATTTTCGAG
65 CCCGTTATTTTCGAG
* * * * *
1444570 GGGATACTCTAACCCTGATTTTAATCCCAAAACACCAATTTTTCACAATTGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAACC
1444635 CCGTTA-TTTCTGAG
66 CCGTTATTTTC-GAG
* *
1444649 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATTGGGAATACTCCAAC
1 GGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAAC
1444713 TCTGATTTTG
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
78 51 0.41
79 74 0.59
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (79 bp):
GGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAACC
CCGTTATTTTCGAG
Found at i:1444732 original size:51 final size:50
Alignment explanation
Indices: 1444652--1444766 Score: 149
Period size: 51 Copynumber: 2.3 Consensus size: 50
1444642 TTCTGAGGGG
* * *
1444652 ATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATTGGGA
1 ATACTCCAACCCCGATTTTATTTCCAAAACACCAA-TTTTCACAATCGGGA
* * * *
1444703 ATACTCCAACTCTGATTTTGTTTCCAAAACACCAATTTTCACAATCGGGG
1 ATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCACAATCGGGA
*
1444753 ATACTCTAACCCCG
1 ATACTCCAACCCCG
1444767 TTATTTCCAA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
50 24 0.44
51 30 0.56
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.31
Consensus pattern (50 bp):
ATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCACAATCGGGA
Found at i:1444753 original size:129 final size:130
Alignment explanation
Indices: 1444571--1444844 Score: 390
Period size: 129 Copynumber: 2.1 Consensus size: 130
1444561 ATTTTCGAGG
* *
1444571 GGATACTCTAACCCTGATTTTAATCCCAAAACACCAATTTTTCACAATTGGGGATACTCCAACCC
1 GGATACTCCAACCCTGATTTTAATCCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC
** * *
1444636 CGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATTG-
66 CGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTTCTAAAACACCAATTTTTCACAATCGA
* ** * *
1444700 GGAATACTCCAACTCTGATTTTGTTTCCAAAACACCAA-TTTTCACAATCGGGGATACTCTAACC
1 GG-ATACTCCAACCCTGATTTTAATCCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
* ***
1444764 CCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTTTCACAATCG
65 CCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTTCTAAAACACCAATTTTTCACAATCG
1444829 A
130 A
1444830 GGATACTCCAACCCT
1 GGATACTCCAACCCT
1444845 ATTATTTTCG
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
129 95 0.75
130 32 0.25
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (130 bp):
GGATACTCCAACCCTGATTTTAATCCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC
CGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTTCTAAAACACCAATTTTTCACAATCGA
Found at i:1444869 original size:208 final size:208
Alignment explanation
Indices: 1444495--1444887 Score: 479
Period size: 208 Copynumber: 1.9 Consensus size: 208
1444485 CATCTCAGGG
* * *
1444495 ATACTCCAACCCCGGTTTTATTTCCAAAACCTCAATTTTTCATAATCGGGGATCTCCAATCCCGT
1 ATACTCCAACCCCGATTTTATTTCCAAAACCTCAATTTTTCACAATCGGGGATCTCCAACCCCGT
* * * * * * *
1444560 TATTTTCGAGGGGATACTCTAACCCTGATTTTAATCCCAAAACACCAATTTTTCACAATTGGGGA
66 TATTTCCAAGGGGATACTCCAACCCCGACTTTAATCCCAAAACACCAATTTTTCACAATCGAGGA
* **
1444625 TACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTT
131 TACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCGGCCTTATTTCTAAAACACCAATTT
1444690 TTCACAATTGGGA
196 TTCACAATTGGGA
* * * *
1444703 ATACTCCAACTCTGATTTTGTTTCCAAAACAC-CAA-TTTTCACAATCGGGGATACTCTAACCCC
1 ATACTCCAACCCCGATTTTATTTCCAAAAC-CTCAATTTTTCACAATCGGGGAT-CTCCAACCCC
* * * * * ***
1444766 GTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTTTCACAATCGAG
64 GTTATTTCCAAGGGGATACTCCAACCCCGACTTTAATCCCAAAACACCAATTTTTCACAATCGAG
* *
1444831 GATACTCCAACCCTATTATTT-TCGCA-GGGATGCTCCAACCCCGGCCTTATTTCTAAA
129 GATACTCCAACCCCATTATTTCT-G-AGGGGATACTCCAACCCCGGCCTTATTTCTAAA
1444888 GCATCGGCCC
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
207 17 0.11
208 135 0.88
209 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (208 bp):
ATACTCCAACCCCGATTTTATTTCCAAAACCTCAATTTTTCACAATCGGGGATCTCCAACCCCGT
TATTTCCAAGGGGATACTCCAACCCCGACTTTAATCCCAAAACACCAATTTTTCACAATCGAGGA
TACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCGGCCTTATTTCTAAAACACCAATTT
TTCACAATTGGGA
Found at i:1444967 original size:86 final size:81
Alignment explanation
Indices: 1444703--1445064 Score: 289
Period size: 79 Copynumber: 4.5 Consensus size: 81
1444693 ACAATTGGGA
* ** * * * *
1444703 ATACTCCAACTCTGATTTTGTTTC-CAAAACACC-A-ATTTTCACAATCGGGGATACTCTAACCC
1 ATACTCCAACCCCAATTTTATTTCTCAAAACACCGATTTTTTCACAATCGAGGATACTCCAACCC
* ***
1444765 CGTTATTTCCAAGGGG
66 TGTTATTTTTGAGGGG
*** * **
1444781 ATACTCCAACCCCGGCTTTATTTCT-AAAATATTGA-TTTTTCACAATCGAGGATACTCCAACCC
1 ATACTCCAACCCCAATTTTATTTCTCAAAACACCGATTTTTTCACAATCGAGGATACTCCAACCC
* *
1444844 TATTATTTTCGCA-GGG
66 TGTTATTTTTG-AGGGG
* **** * *
1444860 ATGCTCCAACCCCGGCCTTATTTCT-AAAGCATCGGCCCTATTATTTTCACAATCGAGGATACTC
1 ATACTCCAACCCCAATTTTATTTCTCAAA--A-C--ACCGATT-TTTTCACAATCGAGGATACTC
1444924 CAAACCC-GTTATTTTTGAGGGG
60 C-AACCCTGTTATTTTTGAGGGG
* * *
1444946 ATACTCCAACCCCAATTTTATTT-TCAAAACACCGATTTTCT-ATAAT-TAGGGATACTCCAACC
1 ATACTCCAACCCCAATTTTATTTCTCAAAACACCGATTTTTTCACAATCGA-GGATACTCCAACC
*
1445008 CTGTTATTTCTGAGGGG
65 CTGTTATTTTTGAGGGG
1445025 ATACTCCAACCCCAATTTTATTTC-CAAAACACCGATTTTT
1 ATACTCCAACCCCAATTTTATTTCTCAAAACACCGATTTTT
1445065 AATAATCACG
Statistics
Matches: 232, Mismatches: 36, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
78 30 0.13
79 127 0.55
80 4 0.02
81 6 0.03
83 1 0.00
84 2 0.01
85 3 0.01
86 54 0.23
87 5 0.02
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (81 bp):
ATACTCCAACCCCAATTTTATTTCTCAAAACACCGATTTTTTCACAATCGAGGATACTCCAACCC
TGTTATTTTTGAGGGG
Found at i:1445009 original size:165 final size:165
Alignment explanation
Indices: 1444737--1445037 Score: 378
Period size: 165 Copynumber: 1.8 Consensus size: 165
1444727 CAAAACACCA
* * * **
1444737 ATTTTCACAATCGGGGATACTCTAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTAT
1 ATTTTCACAATCGAGGATACTCCAAACCCGTTATTTCCAAGGGGATACTCCAACCCCAACTTTAT
* ** * *
1444802 TTCTAAAATATTGATTTTTCACAATCGAGGATACTCCAACCCTATTATTT-TCGCA-GGGATGCT
66 TTCTAAAACACCGATTTTTCACAATAGAGGATACTCCAACCCTATTATTTCT-G-AGGGGATACT
1444865 CCAACCCCGGCCTTATTTCTAAAGCATCGGCCCTATT
129 CCAACCCCGGCCTTATTTCTAAAGCATCGGCCCTATT
*** *
1444902 ATTTTCACAATCGAGGATACTCCAAACCCGTTATTTTTGAGGGGATACTCCAACCCCAATTTTAT
1 ATTTTCACAATCGAGGATACTCCAAACCCGTTATTTCCAAGGGGATACTCCAACCCCAACTTTAT
* *
1444967 TT-TCAAAACACCGA-TTTTCTATAATTAG-GGATACTCCAACCCTGTTATTTCTGAGGGGATAC
66 TTCT-AAAACACCGATTTTTC-ACAA-TAGAGGATACTCCAACCCTATTATTTCTGAGGGGATAC
1445029 TCCAACCCC
128 TCCAACCCC
1445038 AATTTTATTT
Statistics
Matches: 115, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
164 7 0.06
165 105 0.91
166 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (165 bp):
ATTTTCACAATCGAGGATACTCCAAACCCGTTATTTCCAAGGGGATACTCCAACCCCAACTTTAT
TTCTAAAACACCGATTTTTCACAATAGAGGATACTCCAACCCTATTATTTCTGAGGGGATACTCC
AACCCCGGCCTTATTTCTAAAGCATCGGCCCTATT
Found at i:1445089 original size:79 final size:79
Alignment explanation
Indices: 1444916--1445090 Score: 264
Period size: 79 Copynumber: 2.2 Consensus size: 79
1444906 TCACAATCGA
* *
1444916 GGATACTCCAAACCC-GTTATTTTTGAGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCG
1 GGATACTCC-AACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCCAAAACACCG
* *
1444980 ATTTTCTATAATTAG
65 ATTTTCTATAATCAC
1444995 GGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCCAAAACACCGA
1 GGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCCAAAACACCGA
1445060 TTTT-TAATAATCAC
66 TTTTCT-ATAATCAC
* *
1445074 GGATACTCTAGCCCTGT
1 GGATACTCCAACCCTGT
1445091 CGTTATCCCC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
78 6 0.07
79 82 0.93
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (79 bp):
GGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCCAAAACACCGA
TTTTCTATAATCAC
Found at i:1448849 original size:29 final size:29
Alignment explanation
Indices: 1448801--1448868 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
1448791 TAACCTATAG
* * *
1448801 GCTTT-AAAAGGGTGCCACTGACTTGTGA
1 GCTTTGAAAAGGATGCAACTGACTTATGA
*
1448829 GCTTTGAAAAGGATGCAACTGACTTATGG
1 GCTTTGAAAAGGATGCAACTGACTTATGA
1448858 GCTTTGAAAAG
1 GCTTTGAAAAG
1448869 ATTGCACCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
28 5 0.14
29 30 0.86
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
GCTTTGAAAAGGATGCAACTGACTTATGA
Found at i:1449003 original size:31 final size:31
Alignment explanation
Indices: 1448859--1449201 Score: 167
Period size: 37 Copynumber: 10.3 Consensus size: 31
1448849 GACTTATGGG
* **
1448859 CTTTGAAAAGATTG-CACCAACTCATGTGGA
1 CTTTGAAAAGGTTGCCACCAACTTGTGTGGA
** * **
1448889 CTTCAAAAAGGTTGTCAATAACTTGTGTGGA
1 CTTTGAAAAGGTTGCCACCAACTTGTGTGGA
* * * *
1448920 CTTT-AACTAGGTTG-CAGCAA-TTCATATGGA
1 CTTTGAA-AAGGTTGCCACCAACTT-GTGTGGA
1448950 CTTTGAAAAGGTCTGGTTGCCACCAACTTGTGTGGA
1 CTTTGAAAA-----GGTTGCCACCAACTTGTGTGGA
* **
1448986 CTTT-AACGATGG-TGCCACCAACTCATGTGGA
1 CTTTGAA--AAGGTTGCCACCAACTTGTGTGGA
* *
1449017 CTTTGAAAAGGTTGCCACGAACTTGTGTAGA
1 CTTTGAAAAGGTTGCCACCAACTTGTGTGGA
* * *
1449048 CTTTGAAAAGGATTATGCCATCGACTTGTCTGGA
1 CTTTGAAAAGG--T-TGCCACCAACTTGTGTGGA
*
1449082 CTTTGGAAAATGTTTGGTTGCCATCAACTTGTGTGGA
1 CTTT-GAAAA-----GGTTGCCACCAACTTGTGTGGA
1449119 CTTTGAAAAGGGTTTAGTTGCCACCAACTTGTGTGGA
1 CTTTGAAAA--G----GTTGCCACCAACTTGTGTGGA
*
1449156 CTTTAAAATTGATTTGGTTGCCACCAACTTGTGTGGA
1 CTTTGAAA---A---GGTTGCCACCAACTTGTGTGGA
*
1449193 CTTTAAAAA
1 CTTTGAAAA
1449202 TGATTTAGTT
Statistics
Matches: 243, Mismatches: 38, Indels: 60
0.71 0.11 0.18
Matches are distributed among these distances:
29 2 0.01
30 30 0.12
31 70 0.29
32 4 0.02
33 2 0.01
34 19 0.08
35 12 0.05
36 19 0.08
37 80 0.33
38 1 0.00
40 3 0.01
41 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (31 bp):
CTTTGAAAAGGTTGCCACCAACTTGTGTGGA
Found at i:1449206 original size:37 final size:37
Alignment explanation
Indices: 1448946--1449207 Score: 227
Period size: 37 Copynumber: 7.5 Consensus size: 37
1448936 GCAATTCATA
* *
1448946 TGGACTTTGAAAA-GGTCTGGTTGCCACCAACTTGTG
1 TGGACTTTGAAAATGATTTGGTTGCCACCAACTTGTG
* **
1448982 TGGACTTT---AACGA--TGG-TGCCACCAACTCATG
1 TGGACTTTGAAAATGATTTGGTTGCCACCAACTTGTG
*
1449013 TGGACTTTG-AAA--A---GGTTGCCACGAACTTGTG
1 TGGACTTTGAAAATGATTTGGTTGCCACCAACTTGTG
* * * * * *
1449044 TAGACTTTGAAAAGGA-TT--ATGCCATCGACTTGTC
1 TGGACTTTGAAAATGATTTGGTTGCCACCAACTTGTG
*
1449078 TGGACTTTGGAAAATG-TTTGGTTGCCATCAACTTGTG
1 TGGACTTT-GAAAATGATTTGGTTGCCACCAACTTGTG
* * *
1449115 TGGACTTTGAAAAGGGTTTAGTTGCCACCAACTTGTG
1 TGGACTTTGAAAATGATTTGGTTGCCACCAACTTGTG
1449152 TGGACTTT-AAAATTGATTTGGTTGCCACCAACTTGTG
1 TGGACTTTGAAAA-TGATTTGGTTGCCACCAACTTGTG
*
1449189 TGGACTTTAAAAATGATTT
1 TGGACTTTGAAAATGATTT
1449208 AGTTTGTGTA
Statistics
Matches: 187, Mismatches: 23, Indels: 31
0.78 0.10 0.13
Matches are distributed among these distances:
30 2 0.01
31 42 0.22
32 6 0.03
33 4 0.02
34 20 0.11
35 8 0.04
36 18 0.10
37 83 0.44
38 4 0.02
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (37 bp):
TGGACTTTGAAAATGATTTGGTTGCCACCAACTTGTG
Found at i:1449514 original size:65 final size:65
Alignment explanation
Indices: 1449406--1449546 Score: 194
Period size: 65 Copynumber: 2.2 Consensus size: 65
1449396 GAACATAAAT
* * * *
1449406 ATTTTGACAAAGATGTTAATGTGTTGATTCAAGGCCAACGACACTAGAATT-TAAGATTTTAACA
1 ATTTTGACAAAGATGTCAATATGCTGATTCAAGGCCAACGACACTAG-ATTCAAAGATTTTAACA
1449470 A
65 A
* * *
1449471 ATTTTAACAAAGATGTCAATATGCTGATTCAAGGCCAATGACACTAGATTCAAAGATTTTGACAA
1 ATTTTGACAAAGATGTCAATATGCTGATTCAAGGCCAACGACACTAGATTCAAAGATTTTAACAA
*
1449536 TTTTTGACAAA
1 ATTTTGACAAA
1449547 AGGTTTCGAC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
64 3 0.05
65 63 0.95
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (65 bp):
ATTTTGACAAAGATGTCAATATGCTGATTCAAGGCCAACGACACTAGATTCAAAGATTTTAACAA
Found at i:1450173 original size:20 final size:20
Alignment explanation
Indices: 1450148--1450201 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
1450138 CTACCACTGT
*
1450148 TTGTATCAATACATGGTACA
1 TTGTATCGATACATGGTACA
1450168 TTGTATCGATACATGGTACA
1 TTGTATCGATACATGGTACA
1450188 TTGTATCGATACAT
1 TTGTATCGATACAT
1450202 TGTGCCCAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGGTACA
Found at i:1452853 original size:31 final size:31
Alignment explanation
Indices: 1452818--1452984 Score: 156
Period size: 31 Copynumber: 5.4 Consensus size: 31
1452808 AAAAGGACAT
* * *
1452818 AAGCTAGTGGCACCCGAGTTAAAGCTCGCAC
1 AAGCTAGTGGCACCCGAGTCAAAGCCCACAC
* * *
1452849 AAGCT-GACGACACCTGAGTCAAAGCCCACAC
1 AAGCTAG-TGGCACCCGAGTCAAAGCCCACAC
* *
1452880 AAGCTGGTGGCACCCTAGTCAAAGCCCACAC
1 AAGCTAGTGGCACCCGAGTCAAAGCCCACAC
* * * **
1452911 AAGTTGGTGGCACCCTAGTCAAAGCCGGCAC
1 AAGCTAGTGGCACCCGAGTCAAAGCCCACAC
* * *
1452942 AAGCTAGCGGCACCTGAGTCTAAGCCCACAC
1 AAGCTAGTGGCACCCGAGTCAAAGCCCACAC
* *
1452973 AGGCTGGTGGCA
1 AAGCTAGTGGCA
1452985 TTTGAACCTA
Statistics
Matches: 110, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
30 1 0.01
31 108 0.98
32 1 0.01
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.14
Consensus pattern (31 bp):
AAGCTAGTGGCACCCGAGTCAAAGCCCACAC
Found at i:1452931 original size:62 final size:62
Alignment explanation
Indices: 1452865--1453066 Score: 181
Period size: 62 Copynumber: 3.1 Consensus size: 62
1452855 ACGACACCTG
1452865 AGTCAAAGCCCACACAAGCTGGTGGCACCCTAGTCAAAGCCCACACAAGTTGGTGGCACCCT
1 AGTCAAAGCCCACACAAGCTGGTGGCACCCTAGTCAAAGCCCACACAAGTTGGTGGCACCCT
** * * * * * *
1452927 AGTCAAAGCCGGCACAAGCTAGCGGCA-CCTGAGTCTAAGCCCACACAGGCTGGTGGCATTTGAA
1 AGTCAAAGCCCACACAAGCTGGTGGCACCCT-AGTCAAAGCCCACACAAGTTGGTGGC-----AC
1452991 CCT
60 CCT
* * * * ** **
1452994 AAGTCTAAGCCCACACAAGTTGGTAGCACCATAGTCAAAGCCTGCACAAGCTTGGCAGCACCCT
1 -AGTCAAAGCCCACACAAGCTGGTGGCACCCTAGTCAAAGCCCACACAAG-TTGGTGGCACCCT
1453058 AGTCAAAGC
1 AGTCAAAGC
1453067 TCGCTTGAGT
Statistics
Matches: 106, Mismatches: 25, Indels: 17
0.72 0.17 0.11
Matches are distributed among these distances:
61 3 0.03
62 46 0.43
63 8 0.08
64 4 0.04
67 4 0.04
68 34 0.32
69 7 0.07
ACGTcount: A:0.30, C:0.31, G:0.23, T:0.16
Consensus pattern (62 bp):
AGTCAAAGCCCACACAAGCTGGTGGCACCCTAGTCAAAGCCCACACAAGTTGGTGGCACCCT
Found at i:1452983 original size:93 final size:94
Alignment explanation
Indices: 1452824--1453045 Score: 270
Period size: 93 Copynumber: 2.3 Consensus size: 94
1452814 ACATAAGCTA
* *
1452824 GTGGCACCCGAGTTAAAGCTCGCACAAGCTGACGACACCTGAGTCAAAGCCCACACAAGCTGGTG
1 GTGGCACCCTAGTCAAAGC-CGCACAAGCTGACGACACCTGAGTCAAAGCCCACACAAGCTGGTG
*
1452889 GC-ACCCT-AGTCAAAGCCCACACAAGTTG
65 GCTAACCTAAGTCAAAGCCCACACAAGTTG
* * *
1452917 GTGGCACCCTAGTCAAAGCCGGCACAAGCT-AGCGGCACCTGAGTCTAAGCCCACACAGGCTGGT
1 GTGGCACCCTAGTCAAAGCC-GCACAAGCTGA-CGACACCTGAGTCAAAGCCCACACAAGCTGGT
*
1452981 GGCATTTGAACCTAAGTCTAAGCCCACACAAGTTG
64 GGC---T-AACCTAAGTCAAAGCCCACACAAGTTG
* *
1453016 GTAGCACCATAGTCAAAGCCTGCACAAGCT
1 GTGGCACCCTAGTCAAAGCC-GCACAAGCT
1453046 TGGCAGCACC
Statistics
Matches: 111, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
92 2 0.02
93 58 0.52
98 4 0.04
99 47 0.42
ACGTcount: A:0.29, C:0.31, G:0.24, T:0.16
Consensus pattern (94 bp):
GTGGCACCCTAGTCAAAGCCGCACAAGCTGACGACACCTGAGTCAAAGCCCACACAAGCTGGTGG
CTAACCTAAGTCAAAGCCCACACAAGTTG
Found at i:1453041 original size:99 final size:93
Alignment explanation
Indices: 1452845--1453045 Score: 260
Period size: 99 Copynumber: 2.1 Consensus size: 93
1452835 GTTAAAGCTC
*
1452845 GCACAAGCTGACGACACCTGAGTCAAAGCCCACACAAGCTGGTGGCACCCTAGTCAAAGCCCACA
1 GCACAAGCTGACGACACCTGAGTCAAAGCCCACACAAGCTGGTGGCAACCTAGTCAAAGCCCACA
* *
1452910 CAAGTTGGTGGCACCCTAGTCAAAGCCG
66 CAAGTTGGTAGCACCATAGTCAAAGCCG
* * * *
1452938 GCACAAGCT-AGCGGCACCTGAGTCTAAGCCCACACAGGCTGGTGGCATTTGAACCTAAGTCTAA
1 GCACAAGCTGA-CGACACCTGAGTCAAAGCCCACACAAGCTGGTGGC-----AACCT-AGTCAAA
*
1453002 GCCCACACAAGTTGGTAGCACCATAGTCAAAGCCT
59 GCCCACACAAGTTGGTAGCACCATAGTCAAAGCCG
1453037 GCACAAGCT
1 GCACAAGCT
1453046 TGGCAGCACC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
92 1 0.01
93 41 0.44
98 4 0.04
99 47 0.51
ACGTcount: A:0.30, C:0.31, G:0.23, T:0.15
Consensus pattern (93 bp):
GCACAAGCTGACGACACCTGAGTCAAAGCCCACACAAGCTGGTGGCAACCTAGTCAAAGCCCACA
CAAGTTGGTAGCACCATAGTCAAAGCCG
Found at i:1453042 original size:31 final size:32
Alignment explanation
Indices: 1453007--1453066 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
1452997 TCTAAGCCCA
*
1453007 CACAAG-TTGGTAGCACCATAGTCAAAGCCTG
1 CACAAGCTTGGCAGCACCATAGTCAAAGCCTG
*
1453038 CACAAGCTTGGCAGCACCCTAGTCAAAGC
1 CACAAGCTTGGCAGCACCATAGTCAAAGC
1453067 TCGCTTGAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.32, C:0.30, G:0.22, T:0.17
Consensus pattern (32 bp):
CACAAGCTTGGCAGCACCATAGTCAAAGCCTG
Found at i:1455770 original size:15 final size:15
Alignment explanation
Indices: 1455750--1455781 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
1455740 AAAATGCATG
1455750 AAACATAATAAAAAA
1 AAACATAATAAAAAA
1455765 AAACATAATAAAAAA
1 AAACATAATAAAAAA
1455780 AA
1 AA
1455782 TGCATGGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (15 bp):
AAACATAATAAAAAA
Found at i:1456750 original size:20 final size:20
Alignment explanation
Indices: 1456703--1456777 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
1456693 AAAAAGACAT
*
1456703 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
1456722 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1456743 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
*
1456763 AATGTATTGATACAT
1 AATGTATCGATACAT
1456778 CAGGGTATGA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1456775 original size:40 final size:39
Alignment explanation
Indices: 1456700--1456777 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
1456690 GGTAAAAAGA
* *
1456700 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* * *
1456739 CATACATGTATCGATATATTGAAAAATGTATTGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
1456778 CAGGGTATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:1457354 original size:32 final size:32
Alignment explanation
Indices: 1457313--1458002 Score: 1175
Period size: 32 Copynumber: 21.6 Consensus size: 32
1457303 GATTTGAAAA
* * ** **
1457313 GGGTTGCCACTGACTCGCATGGGCTTTTAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457345 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457377 GAGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
1457409 GGGTTGCCACCGACTTGTGTGGGTTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457441 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457473 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457505 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457537 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457569 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457601 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457633 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457665 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457697 GGGTTGCCACCGACTTTTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457729 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457761 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457793 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457825 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457857 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1457889 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
*
1457921 GGGTTGCCACCGACTTGTGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* * *
1457953 GGGTTGCCACTGACTTGCGTGGGCTTTGAAAT
1 GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
* *
1457985 GGG-TGCCACGGAGTTGTG
1 GGGTTGCCACCGACTTGTG
1458003 GATTTAAAAG
Statistics
Matches: 634, Mismatches: 24, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
31 12 0.02
32 622 0.98
ACGTcount: A:0.14, C:0.19, G:0.36, T:0.31
Consensus pattern (32 bp):
GGGTTGCCACCGACTTGTGTGGGCTTTGGAAT
Found at i:1458018 original size:27 final size:27
Alignment explanation
Indices: 1457985--1458830 Score: 1309
Period size: 27 Copynumber: 31.0 Consensus size: 27
1457975 GCTTTGAAAT
*
1457985 GGGTGCCACGGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1458012 GGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1458039 AGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
1458066 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458093 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
1458121 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458148 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458175 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1458202 GAGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
1458229 AGGTGCTACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1458256 GGGTGCCACAGAGTTGTGGACTT-AAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458282 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
1458309 GAGATGCCGCGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
* *
1458337 GGGATGCCACAGTGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
1458365 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1458392 GGGTGCCACGGAGTTGTAGACTTAAAGA
1 GGGTGCCACGGAGTTGTGGACTTAAA-A
1458420 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
1458447 GAGCGCTACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1458474 GGGTGCCACGGAATTGTGGACTTAAAGA
1 GGGTGCCACGGAGTTGTGGACTTAAA-A
*
1458502 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458529 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* * *
1458557 GAGTGCCACGGAATTGTGGACTTTGAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
1458585 -GGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458611 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* **
1458639 GAGTGCCACGGAGTTGTGGACTTTGAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458666 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458693 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1458720 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
1458748 GAGTGCCACGGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1458775 GGGTGCCACAGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
1458803 GGATGCCACGGAGTTGTGGACTTCAAAA
1 GGGTGCCACGGAGTTGTGGACTT-AAAA
1458831 AGAAATGCCA
Statistics
Matches: 749, Mismatches: 58, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
26 30 0.04
27 483 0.64
28 236 0.32
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.23
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:1458126 original size:82 final size:81
Alignment explanation
Indices: 1457985--1458830 Score: 1309
Period size: 82 Copynumber: 10.3 Consensus size: 81
1457975 GCTTTGAAAT
* * *
1457985 GGGTGCCACGGAGTTGTGGATTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1458050 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* *
1458066 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1458131 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
*
1458148 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1458213 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* * *
1458229 AGGTGCTACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTT-AAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1458293 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* * * *
1458309 GAGATGCCGCGGAGTTGTGGACTTAAAAGGGATGCCACAGTGTTGTGGACTTAAAAGGGTGCCAC
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC
1458374 GGAGTTGTGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* * * *
1458392 GGGTGCCACGGAGTTGTAGACTTAAAGAGGGTGCCACGGAGTTGTGGACTTAAAAGAGCGCTACG
1 GGGTGCCACGGAGTTGTGGACTTAAA-AGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1458457 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
1458474 GGGTGCCACGGAATTGTGGACTTAAAGAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAA-AGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1458539 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * * *
1458557 GAGTGCCACGGAATTGTGGACTTTGAAA-GGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1458621 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* **
1458639 GAGTGCCACGGAGTTGTGGACTTTGAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1458704 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* * *
1458720 GGGTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGATTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1458785 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
*
1458803 GGATGCCACGGAGTTGTGGACTTCAAAA
1 GGGTGCCACGGAGTTGTGGACTT-AAAA
1458831 AGAAATGCCA
Statistics
Matches: 710, Mismatches: 44, Indels: 20
0.92 0.06 0.03
Matches are distributed among these distances:
80 29 0.04
81 179 0.25
82 406 0.57
83 92 0.13
84 4 0.01
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.23
Consensus pattern (81 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAA
Found at i:1458179 original size:109 final size:108
Alignment explanation
Indices: 1457987--1458830 Score: 1314
Period size: 109 Copynumber: 7.7 Consensus size: 108
1457977 TTTGAAATGG
* * *
1457987 GTGCCACGGAGTTGTGGATTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
* * *
1458052 TTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGTCTTAAAAGG
66 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGA
1458095 GATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGA
1 G-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGA
1458160 GTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGA
65 GTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGA
* * *
1458204 GTGCCACGGAGTTGTGGACTTAAAAAGGTGCTACGGAGTTGTGGACTTAAAAGGGTGCCACAGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
1458269 TTGTGGACTT-AAAGGGTGCCACGGAGTTGTGGACTTAAAAGA
66 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGA
* * *
1458311 GATGCCGCGGAGTTGTGGACTTAAAAGGGATGCCACAGTGTTGTGGACTTAAAAGGGTGCCACGG
1 G-TGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
* *
1458376 AGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTAGACTTAAAGAGG
64 AGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGA
* * * *
1458422 GTGCCACGGAGTTGTGGACTTAAAAGAGCGCTACGGAGTTGTGGACTTAAAAGGGTGCCACGGAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
* *
1458487 TTGTGGACTTAAAGAGGGTGCCACAGAGTTGTGGACTTAAAAGG
66 TTGTGGACTTAAA-AGGGTGCCACGGAGTTGTGGACTTAAAAGA
* * * *
1458531 GTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAATTGTGGACTTTGAAA-GGTGCCACAG
1 GTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGG
1458595 AGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGA
64 AGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGA
**
1458641 GTGCCACGGAGTTGTGGACTTTGAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
1458706 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGA
66 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGA
* * *
1458750 GTGCCACGGAGTTGTGGATTTAAAAGGGTGCCACAGAGTTGTGGACTTTAAAAGGATGCCACGGA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGA
1458815 GTTGTGGACTTCAAAA
65 GTTGTGGACTT-AAAA
1458831 AGAAATGCCA
Statistics
Matches: 679, Mismatches: 45, Indels: 21
0.91 0.06 0.03
Matches are distributed among these distances:
107 33 0.05
108 102 0.15
109 353 0.52
110 179 0.26
111 12 0.02
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.23
Consensus pattern (108 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAG
TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGA
Found at i:1466371 original size:15 final size:15
Alignment explanation
Indices: 1466351--1466383 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
1466341 AAAATGCATG
1466351 AAACATAATAAAAAA
1 AAACATAATAAAAAA
1466366 AAACATAATAAAAAA
1 AAACATAATAAAAAA
1466381 AAA
1 AAA
1466384 TGCATGGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (15 bp):
AAACATAATAAAAAA
Found at i:1467352 original size:20 final size:20
Alignment explanation
Indices: 1467305--1467379 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
1467295 AAAAAGACAT
*
1467305 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
1467324 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1467345 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
*
1467365 AATGTATTGATACAT
1 AATGTATCGATACAT
1467380 CAGGGTATGA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1467377 original size:40 final size:39
Alignment explanation
Indices: 1467302--1467379 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
1467292 GGTAAAAAGA
* *
1467302 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* * *
1467341 CATACATGTATCGATATATTGAAAAATGTATTGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
1467380 CAGGGTATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:1473310 original size:20 final size:20
Alignment explanation
Indices: 1473285--1473358 Score: 139
Period size: 20 Copynumber: 3.7 Consensus size: 20
1473275 TTTTAACTAG
*
1473285 ATGTATTGATACATTATTCA
1 ATGTATCGATACATTATTCA
1473305 ATGTATCGATACATTATTCA
1 ATGTATCGATACATTATTCA
1473325 ATGTATCGATACATTATTCA
1 ATGTATCGATACATTATTCA
1473345 ATGTATCGATACAT
1 ATGTATCGATACAT
1473359 CTGGGTAGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTATTCA
Found at i:1473402 original size:20 final size:20
Alignment explanation
Indices: 1473376--1473430 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1473366 GAAAAGACAG
*
1473376 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
1473396 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
*
1473416 AATGTATCGACACAT
1 AATGTATCGATACAT
1473431 CTGGGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:1473421 original size:72 final size:71
Alignment explanation
Indices: 1473304--1473441 Score: 199
Period size: 72 Copynumber: 1.9 Consensus size: 71
1473294 TACATTATTC
* ** *
1473304 AATGTATCGATACATTATTCAATGTATCGATACATTATTCAATGTATCGATACATCTGGGTAGAA
1 AATGTATCGATACATTATACAATGTATCGATACATTATAAAATGTATCGACACATCTGGGTA-AA
1473369 AAGACAG
65 AAGACAG
1473376 AATGTATCGATACATTCATAC-ATGTATCGATACATTGA-AAAATGTATCGACACATCTGGGTAA
1 AATGTATCGATACATT-ATACAATGTATCGATACATT-ATAAAATGTATCGACACATCTGGGTAA
1473439 AAA
64 AAA
1473442 TGTGACTTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
71 4 0.07
72 52 0.87
73 4 0.07
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (71 bp):
AATGTATCGATACATTATACAATGTATCGATACATTATAAAATGTATCGACACATCTGGGTAAAA
AGACAG
Found at i:1474845 original size:19 final size:20
Alignment explanation
Indices: 1474821--1474871 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1474811 TAGCCAAACT
**
1474821 TGTATCGATACA-CAAAGTA
1 TGTATCGATACACCAAAAAA
1474840 TGTATCGATACACCAAAAAA
1 TGTATCGATACACCAAAAAA
1474860 TGTATCGATACA
1 TGTATCGATACA
1474872 TTGGCTTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (20 bp):
TGTATCGATACACCAAAAAA
Found at i:1480619 original size:33 final size:33
Alignment explanation
Indices: 1480577--1480644 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
1480567 CATATCTTTT
1480577 AGTGATGATGAGATACCTAATGGAGGTAGAGGA
1 AGTGATGATGAGATACCTAATGGAGGTAGAGGA
1480610 AGTGATGATGAGATACCTAATGGAGGTAGAGGA
1 AGTGATGATGAGATACCTAATGGAGGTAGAGGA
1480643 AG
1 AG
1480645 CTATAAGGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.37, C:0.06, G:0.37, T:0.21
Consensus pattern (33 bp):
AGTGATGATGAGATACCTAATGGAGGTAGAGGA
Found at i:1481392 original size:81 final size:81
Alignment explanation
Indices: 1481260--1481426 Score: 262
Period size: 81 Copynumber: 2.1 Consensus size: 81
1481250 CAAGGTATCC
* *
1481260 CTCAAGCACTCCGAGTTAGCAACAAGGTCAATAAACGAGGGTTGGGGTTTAAACCAAACACTCAT
1 CTCAAGCACTCCGAGTCAGCAACAAGGTCAATAAACAAGGGTTGGGGTTTAAACCAAACACTCAT
* *
1481325 CAGCAACGAAGGCAAG
66 CAACAAAGAAGGCAAG
* * *
1481341 CTCAAGCACTCTGAGTCAGCAACAAGGTCGATAAACAAGGGTTGGGTTTTAAACCAAACACTCAT
1 CTCAAGCACTCCGAGTCAGCAACAAGGTCAATAAACAAGGGTTGGGGTTTAAACCAAACACTCAT
*
1481406 CAACAAAGAAGGTAAG
66 CAACAAAGAAGGCAAG
1481422 CTCAA
1 CTCAA
1481427 AAAGCTCATA
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (81 bp):
CTCAAGCACTCCGAGTCAGCAACAAGGTCAATAAACAAGGGTTGGGGTTTAAACCAAACACTCAT
CAACAAAGAAGGCAAG
Found at i:1486926 original size:28 final size:28
Alignment explanation
Indices: 1486877--1486950 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
1486867 ATAAAATCGA
1486877 GGTTAGAGTATCCCTTCG--GAAATAAC-G
1 GGTTAGAGTATCCC--CGATGAAATAACAG
* *
1486904 GGATTGGAGTATTCCCGATGAAATAACAG
1 GG-TTAGAGTATCCCCGATGAAATAACAG
1486933 GGTTAGAGTATCCCCGAT
1 GGTTAGAGTATCCCCGAT
1486951 TGTGAAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 2 0.05
27 2 0.05
28 32 0.82
29 3 0.08
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (28 bp):
GGTTAGAGTATCCCCGATGAAATAACAG
Found at i:1486990 original size:79 final size:77
Alignment explanation
Indices: 1486923--1487155 Score: 261
Period size: 79 Copynumber: 3.0 Consensus size: 77
1486913 TATTCCCGAT
* * * *
1486923 GAAATAACAGGGTTAGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAACTGGGGTT
1 GAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAACCGAGGTT
1486988 GGAGTATCCTCTCG
65 GGAGTAT-CTCTCG
* * * * * *
1487002 GAAATAACGAGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTGTAGAAATAAAGCCGAGGTT
1 GAAATAACG-GGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAACCGAGGTT
*
1487067 AGAGTATCATCTCG
65 GGAGTATC-TCTCG
* * * *
1487081 GAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATC-AGAGT
1 GAAATAA-CGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAACCGAG-GT
*
1487145 TGAAGTATCTC
64 TGGAGTATCTC
1487156 CGAGATGAAA
Statistics
Matches: 127, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 6 0.05
79 120 0.94
80 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (77 bp):
GAAATAACGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAACCGAGGTTG
GAGTATCTCTCG
Found at i:1487099 original size:186 final size:186
Alignment explanation
Indices: 1486770--1487108 Score: 423
Period size: 186 Copynumber: 1.8 Consensus size: 186
1486760 CTGACTATGG
* * * *
1486770 AAAATCGGTGTTTTGGAAATAAAATCGGGGTTGAAGTATCCCCTTGAAAATAATAAAGTTGGAGT
1 AAAATCGGTATTTTAGAAATAAAATCGGGGTTGAAGTATCCCCTCGAAAATAACAAAGTTGGAGT
*** * * *
1486835 ATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAATCGAGGTTAGAGTATCCCTTCGGAAAT
66 ATCCCCGATTGTGAAAAATCAATATTTAGAAAATAAAACCGAGGTTAGAGTATCCCTTCGGAAAT
*
1486900 AACGGGATTGGAGTATTCCCGATGAAATAACAGGGTTAGAGTATCCCCGATTGTGA
131 AACGGGATTGGAGTATCCCCGATGAAATAACAGGGTTAGAGTATCCCCGATTGTGA
* * * * * *
1486956 AAAATTGGTATTTTAGAAATAAAA-CTGGGGTTGGAGTATCCTCTCGGAAATAACGAGGTTGGAG
1 AAAATCGGTATTTTAGAAATAAAATC-GGGGTTGAAGTATCCCCTCGAAAATAACAAAGTTGGAG
* * * *
1487020 TATCCTCGATTGTGAGAAATCAATATTGTAG-AAATAAAGCCGAGGTTAGAGTAT-CATCTCGGA
65 TATCCCCGATTGTGAAAAATCAATATT-TAGAAAATAAAACCGAGGTTAGAGTATCCCT-TCGGA
* *
1487083 AATAATGGGGTTGGAGTATCCCCGAT
128 AATAACGGGATTGGAGTATCCCCGAT
1487109 TGTGAAAAAT
Statistics
Matches: 127, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
185 3 0.02
186 122 0.96
187 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (186 bp):
AAAATCGGTATTTTAGAAATAAAATCGGGGTTGAAGTATCCCCTCGAAAATAACAAAGTTGGAGT
ATCCCCGATTGTGAAAAATCAATATTTAGAAAATAAAACCGAGGTTAGAGTATCCCTTCGGAAAT
AACGGGATTGGAGTATCCCCGATGAAATAACAGGGTTAGAGTATCCCCGATTGTGA
Found at i:1489177 original size:14 final size:14
Alignment explanation
Indices: 1489155--1489184 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1489145 ACATGTGTTA
*
1489155 AAAATCACGTTTTG
1 AAAACCACGTTTTG
1489169 AAAACCACGTTTTG
1 AAAACCACGTTTTG
1489183 AA
1 AA
1489185 TGGACAATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
AAAACCACGTTTTG
Found at i:1490009 original size:61 final size:61
Alignment explanation
Indices: 1489923--1491516 Score: 1657
Period size: 61 Copynumber: 25.8 Consensus size: 61
1489913 AAATAGGTCT
* * * ** *
1489923 TGCTCCTTGGGGACT-AGAAGGTGCCACCAACTTATATGGGCTTTGCAAGGAGAAA-GCATCT
1 TGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGA-AAAGGCATCC
* * *
1489984 TGCTCATTGAAGG-CTG-GAAGCTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1 TGCTCTTTG-AGGACTGAGAAG-TGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
1490045 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* *
1490107 TGCTCCTTGAGGACTGAGAAGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* *
1490168 TATGC-C-TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 --TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
** *
1490229 TGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGGGTCT
1 TGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
1490290 TACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCA
1 TGCTCTTTGAGGACT-GAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1490352 TGCTCTTTAAGGACT-AGAAGGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAGACATCC
1 TGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
1490413 TACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * **
1490475 TGCTCCTTAAGGACTGA-AGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * ** **
1490535 TGCTCTTTGAGGACCAGAAAAGTGCCACCGACTTGGGTGGGCTTTAAAAGGAAAAGGTGTACC
1 TGCTCTTTGAGGA-CTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCAT-CC
* * * * * * * *
1490598 TACTCTTTGAGGACTAGAAAAATGCCACCGACTTGTATGGGCTTTAAAAGGAAAAGACATCT
1 TGCTCTTTGAGGACT-GAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1490660 TGCTCTTTGAGGACTAGAAAAGTGCCACAAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
1490722 TGCTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1490783 GGCTAC-TTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGCCTTTAAAAGGAAAAGGCATCC
1 TGCT-CTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * **
1490844 TGCTCCTTGAGGACTGA-AAGGTGCCACTAACTTGTGTGGGCTTTAAAAGGAAAAGGCATTT
1 TGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1490905 TGCTATTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * * * *
1490967 TGCTCTTTGAAGATTGAAAAGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
1491028 GGCTCCTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * * *
1491089 TGCTCCTTGAGGACTGAAAAGTGCCACCAAATTGTGTGGGCTTTAAAAGGAAAAGGCACCC
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * * * ***
1491150 AGCTCTTTGAGGACTAAAAAGTACCACCAACTTGTGTGGGCCACCAACTTCT-GTGGGCTTTAAA
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGG-------CTT-TAAAAGG----AAA
*
1491214 AGGAAAAGGCGTCC
54 A------GGCATCC
* * *
1491228 TGCTCCTTGAGAACTGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * * **
1491289 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGGGTGTCC
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * **
1491350 TGCTCTTTGACGAAT-AGAAGGTGCCACCAACTTGCGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* ** *
1491411 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTT-----G-AAAGGTGTGC
1 TGCTCTTTGAGGACT-GAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1491467 TGCTCTTTGAGGACTG-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TGCTCTTTGAGGACTGAG-AAGTGCCACCAACTTATGTGGGCTTTAAAAGG
1491517 CGTCCTGCTC
Statistics
Matches: 1329, Mismatches: 148, Indels: 113
0.84 0.09 0.07
Matches are distributed among these distances:
55 25 0.02
56 22 0.02
57 1 0.00
59 3 0.00
60 74 0.06
61 737 0.55
62 339 0.26
63 69 0.05
67 4 0.00
68 5 0.00
69 1 0.00
70 1 0.00
71 5 0.00
72 4 0.00
78 39 0.03
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (61 bp):
TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCC
Found at i:1490233 original size:122 final size:123
Alignment explanation
Indices: 1489923--1491516 Score: 1956
Period size: 122 Copynumber: 12.9 Consensus size: 123
1489913 AAATAGGTCT
* * * * * ** * *
1489923 TGCTCCTTGGGGACTAG-AAGGTGCCACCAACTTATATGGGCTTTGCAAGGAGAAA-GCATCTTG
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCGTCCTG
* * *
1489986 CTCATTGAAGG-CTG-GAAGCTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
65 CTCCTTG-AGGACTGAAAAG-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
*
1490045 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * *
1490110 TCCTTGAGGACTGAGAAGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAGGCATCC
66 TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
*
1490168 TATGC-C-TTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 --TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
* * * ** *
1490230 GCTCTTTGAGGACT-AGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGGGTCT
64 GCTCCTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1490290 TACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCATGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * * * * *
1490355 TCTTTAAGGACT-AGAAGGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAGACATCC
66 TCCTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
*
1490413 TACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * * **
1490478 TCCTTAAGGACTG-AAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGTGTCC
66 TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * * * *
1490535 TGCTCTTTGAGGACCAGAAAAGTGCCACCGACTTGGGTGGGCTTTAAAAGGAAAAGGTGTACCTA
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT-CCTG
* * * * * *
1490600 CTCTTTGAGGACTAGAAAAATGCCACCGACTTGTATGGGCTTTAAAAGGAAAAGACATCT
65 CTCCTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* *
1490660 TGCTCTTTGAGGACTAGAAAAGTGCCACAAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
*
1490725 TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGGAAAAGGCATCC
66 TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
1490783 GGCTAC-TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGCCTTTAAAAGGAAAAGGCATCCTG
1 TGCT-CTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTG
* * **
1490846 CTCCTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGGAAAAGGCATTT
65 CTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* *
1490905 TGCTATTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * * * *
1490970 TCTTTGAAGATTGAAAAGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCGTCC
66 TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1491028 GGCTCCTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* *
1491092 TCCTTGAGGACTGAAAAGTGCCACCAAATTGTGTGGGCTTTAAAAGGAAAAGGCACCC
66 TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1491150 AGCTCTTTGAGGACTA-AAAAGTACCACCAACTTGTGTGGGCCACCAACTTCTGTGGGCTTTAAA
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGG----------C--T----TTAAAA
* * *
1491214 AGGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGA
50 GG-AAAAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
1491279 AAAGGCATCC
114 AAAGGCATCC
* *
1491289 TGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGGGTGTCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * * * *
1491353 TCTTTGACGAAT-AGAAGGTGCCACCAACTTGCGTGGGCTTTAAAAGGAAAAGGCATCC
66 TCCTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
1491411 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTT-----G-AAAGGTGTGCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* *
1491470 TCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGG
66 TCCTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1491517 CGTCCTGCTC
Statistics
Matches: 1296, Mismatches: 136, Indels: 85
0.85 0.09 0.06
Matches are distributed among these distances:
117 48 0.04
118 3 0.00
119 1 0.00
120 2 0.00
121 3 0.00
122 541 0.42
123 469 0.36
124 22 0.02
125 92 0.07
127 1 0.00
129 1 0.00
132 1 0.00
134 1 0.00
138 6 0.00
139 105 0.08
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (123 bp):
TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
Found at i:1490378 original size:245 final size:247
Alignment explanation
Indices: 1489923--1491516 Score: 1986
Period size: 245 Copynumber: 6.4 Consensus size: 247
1489913 AAATAGGTCT
* * * * ** * *
1489923 TGCTCCTTGGGGACTAG-AAGGTGCCACCAACTTATATGGGCTTTGCAAGGAGAAA-GCATCTTG
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGA-AAAGGCGTCCTG
* *
1489986 CTCATTGAAGG-CTGGAAGCTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTC
65 CTCCTTG-AGGACTGAAAG-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTC
*
1490050 TTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTGCTCCTT
128 TTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTT
* *
1490115 GAGGACT-GAGAA-GTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAGGCATCCTA
192 GAGGACTAGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTA
* *
1490170 TGC-C-TTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * * * * *
1490232 TCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGGGTCTTACTCTT
66 TCCTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTT
* * * *
1490297 TGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCATGCTCTTTAA
130 TGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGA
* * *
1490362 GGACTAG-AAGGTGCCACCAACTTATGTGAGCTTTAAAAGGAAAAGACATCCTA
194 GGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTA
*
1490415 --CTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * * *
1490478 TCCTTAAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTT
66 TCCTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTT
* * * * * *
1490543 GAGGACCAGAAAAGTGCCACCGACTTGGGTGGGCTTTAAAAGGAAAAGGTGTACCTACTCTTTGA
131 GAGGA-CTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT-CCTGCTCCTTGA
** * * *
1490608 GGACTAGAAAAATGCCACCGACTTGTATGGGCTTTAAAAGGAAAAGACAT-CT-
194 GGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTA
* * *
1490660 TGCTCTTTGAGGACTAGAAAAGTGCCACAAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * *
1490725 TCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGCCTTTAAAAGGAAAAGGCATCCGGCTAC-
66 TCCTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCT-CT
* * *
1490789 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGCCTTTAAAAGGAAAAGGCATCCTGCTCCTTGA
129 TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGA
* *
1490854 GGACT-GAAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT--TT
194 GGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTA
*
1490905 TGCTATTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * * * * *
1490970 TCTTTGAAGATTGAAAAGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCGTCCGGCTCCT
66 TCCTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTT
*
1491035 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAG
130 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAG
* * *
1491100 GACT-GAAAAGTGCCACCAAATTGTGTGGGCTTTAAAAGGAAAAGGCA-CCCA
195 GACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTA
*
1491151 -GCTCTTTGAGGACTAAAAAGTACCACCAACTTGTGTGGGCCACCAACTTCTGTGGGCTTTAAAA
1 TGCTCTTTGAGGACT----AG-A--A--AA-----GT--GCCACCAACTTATGTGGGCTTTAAAA
* *
1491215 GGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAA
50 GGAAAAGGCGTCCTGCTCCTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
* *
1491280 AAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAGGG
114 AAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG
* * * * *
1491345 TGTCCTGCTCTTTGACGAATAG-AAGGTGCCACCAACTTGCGTGGGCTTTAAAAGGAAAAGGCAT
179 CGTCCTGCTCCTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1491409 CC--
244 CCTA
* *
1491411 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTT-----G-AAAGGTGTGCTGC
1 TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* * *
1491470 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
66 TCCTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1491517 CGTCCTGCTC
Statistics
Matches: 1198, Mismatches: 109, Indels: 88
0.86 0.08 0.06
Matches are distributed among these distances:
239 51 0.04
240 2 0.00
243 1 0.00
244 12 0.01
245 603 0.50
246 97 0.08
247 153 0.13
248 49 0.04
249 3 0.00
250 1 0.00
252 3 0.00
254 3 0.00
256 1 0.00
257 2 0.00
259 2 0.00
261 212 0.18
262 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (247 bp):
TGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
TCCTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTT
GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGG
ACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTA
Found at i:1491195 original size:17 final size:17
Alignment explanation
Indices: 1491173--1491207 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1491163 CTAAAAAGTA
*
1491173 CCACCAACTTGTGTGGG
1 CCACCAACTTCTGTGGG
1491190 CCACCAACTTCTGTGGG
1 CCACCAACTTCTGTGGG
1491207 C
1 C
1491208 TTTAAAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.34, G:0.26, T:0.23
Consensus pattern (17 bp):
CCACCAACTTCTGTGGG
Found at i:1491248 original size:78 final size:78
Alignment explanation
Indices: 1491111--1491268 Score: 226
Period size: 78 Copynumber: 2.0 Consensus size: 78
1491101 ACTGAAAAGT
* * *
1491111 GCCACCAAATTGTGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCTTTGAGGACTAAAAAGTACCA
1 GCCACCAAATTCTGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCCTTGAGAACTAAAAAGTACCA
*
1491176 CCAACTTGTGTGG
66 CCAACTTATGTGG
* ** * * *
1491189 GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCA
1 GCCACCAAATTCTGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCCTTGAGAACTAAAAAGTACCA
1491254 CCAACTTATGTGG
66 CCAACTTATGTGG
1491267 GC
1 GC
1491269 TTTAAAAGGA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (78 bp):
GCCACCAAATTCTGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCCTTGAGAACTAAAAAGTACCA
CCAACTTATGTGG
Found at i:1491300 original size:139 final size:139
Alignment explanation
Indices: 1491050--1491329 Score: 488
Period size: 139 Copynumber: 2.0 Consensus size: 139
1491040 ACTGAAAGGT
* *
1491050 GCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCA
1 GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCA
*
1491115 CCAAATTGTGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCTTTGAGGACTAAAAAGTACCACCAA
66 CCAAATTATGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCTTTGAGGACTAAAAAGTACCACCAA
1491180 CTTGTGTGG
131 CTTGTGTGG
1491189 GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCA
1 GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCA
* * * * *
1491254 CCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAA
66 CCAAATTATGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCTTTGAGGACTAAAAAGTACCACCAA
1491319 CTTGTGTGG
131 CTTGTGTGG
1491328 GC
1 GC
1491330 TTTAAAAGGA
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 133 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (139 bp):
GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCA
CCAAATTATGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCTTTGAGGACTAAAAAGTACCACCAA
CTTGTGTGG
Found at i:1491332 original size:200 final size:183
Alignment explanation
Indices: 1491189--1491516 Score: 447
Period size: 178 Copynumber: 1.8 Consensus size: 183
1491179 ACTTGTGTGG
*
1491189 GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGAACTGAAAAGTGCCA
1 GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCA
*
1491254 CCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAA
66 CCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAA
* *** * * *
1491319 CTTGTGTGGGCTTTAAAAGGAAAGGGTGTCCTGCTCTTTGACGAATAGAAGGT
131 CTTGTGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCTTTGACAAATACAAGGT
* *
1491372 GCCACCAACTTGC-GTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAAGTGC
1 GCCACCAACTT-CTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACT-GAAAAGTGC
* *
1491436 CACCAACTTATGTGGGCTTT-----G-AAAGGTGTGCTGCTCTTTGAGGACTGGAAAA-TGCCAC
64 CACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCAC
*
1491494 CAACTTGTGTGGGCTTTGAAAGG
128 CAACTTGTGTGGGCTTTAAAAGG
1491517 CGTCCTGCTC
Statistics
Matches: 135, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
178 50 0.37
179 6 0.04
183 49 0.36
184 30 0.22
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (183 bp):
GCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACTGAAAAGTGCCA
CCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAA
CTTGTGTGGGCTTTAAAAGGAAAAGGCACCCAGCTCTTTGACAAATACAAGGT
Found at i:1492634 original size:13 final size:12
Alignment explanation
Indices: 1492618--1492651 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
1492608 TTTCTCTCTT
1492618 TTTTTTTTCTTTG
1 TTTTTTTT-TTTG
1492631 TTTTGTTTTTTTG
1 TTTT-TTTTTTTG
1492644 TTTTTTTT
1 TTTTTTTT
1492652 AAATGAAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 12 0.60
14 4 0.20
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:1497224 original size:20 final size:19
Alignment explanation
Indices: 1497199--1497247 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
1497189 TTCCAGATGC
1497199 ATCGATACA-AAGAAATTTGT
1 ATCGATACATAA-AAATTT-T
*
1497219 ATCGATACATTAAAATTTT
1 ATCGATACATAAAAATTTT
1497238 ATCGATACAT
1 ATCGATACAT
1497248 TTCAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 11 0.41
20 15 0.56
21 1 0.04
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
ATCGATACATAAAAATTTT
Found at i:1497242 original size:19 final size:20
Alignment explanation
Indices: 1497211--1497248 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
1497201 CGATACAAAG
1497211 AAATTTGTATCGATACATTA
1 AAATTTGTATCGATACATTA
1497231 AAATTT-TATCGATACATT
1 AAATTTGTATCGATACATT
1497249 TCAACTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (20 bp):
AAATTTGTATCGATACATTA
Found at i:1500002 original size:20 final size:19
Alignment explanation
Indices: 1499977--1500015 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
1499967 TTTCAAATGC
1499977 ATTGTATCGATACATTAGGA
1 ATTGTATCGATACA-TAGGA
1499997 ATTGTATCGATACATAGGA
1 ATTGTATCGATACATAGGA
1500016 GCGTGAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (19 bp):
ATTGTATCGATACATAGGA
Found at i:1500716 original size:2 final size:2
Alignment explanation
Indices: 1500704--1500733 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
1500694 TTATTCAATC
1500704 AT AT AT CAT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT A
1500734 AATTCAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1505089 original size:20 final size:20
Alignment explanation
Indices: 1505064--1505118 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1505054 ATTGGGCTCA
* *
1505064 ATGTATCGATACATTTTACC
1 ATGTATCGATACAATTCACC
* *
1505084 ATGTATCAATACAATTCATC
1 ATGTATCGATACAATTCACC
1505104 ATGTATCGATACAAT
1 ATGTATCGATACAAT
1505119 GAATCAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:1509615 original size:20 final size:20
Alignment explanation
Indices: 1509578--1509615 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1509568 TAAACCTTGA
*
1509578 TCATGCATTTTTACCATGCT
1 TCATGCATTTATACCATGCT
*
1509598 TCATGCATTTATAGCATG
1 TCATGCATTTATACCATG
1509616 TCCAGCACCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (20 bp):
TCATGCATTTATACCATGCT
Found at i:1512541 original size:18 final size:20
Alignment explanation
Indices: 1512509--1512547 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
1512499 GCACTTTTGA
1512509 TAATGTTTGAATGATG-TTG
1 TAATGTTTGAATGATGATTG
*
1512528 TAAT-TTTGATTGATGATTG
1 TAATGTTTGAATGATGATTG
1512547 T
1 T
1512548 GTGCTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (20 bp):
TAATGTTTGAATGATGATTG
Found at i:1515842 original size:13 final size:13
Alignment explanation
Indices: 1515824--1515848 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1515814 ATATTGTACA
1515824 GTATCGATACATT
1 GTATCGATACATT
1515837 GTATCGATACAT
1 GTATCGATACAT
1515849 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1515861 original size:20 final size:21
Alignment explanation
Indices: 1515836--1515886 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
1515826 ATCGATACAT
**
1515836 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
1515856 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
1515877 TGTATCGATA
1 TGTATCGATA
1515887 TAGGTCATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:1515948 original size:13 final size:13
Alignment explanation
Indices: 1515930--1515954 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1515920 ACACACATTA
1515930 TGTATCGATACAT
1 TGTATCGATACAT
1515943 TGTATCGATACA
1 TGTATCGATACA
1515955 CTCAAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1515951 original size:32 final size:32
Alignment explanation
Indices: 1515910--1515974 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
1515900 GTAGCCAAAT
**
1515910 TTGTATCGATACACACATTATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
1515942 TTGTATCGATACACTCAAAATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
1515974 T
1 T
1515975 AGGCTTGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:1521542 original size:13 final size:13
Alignment explanation
Indices: 1521524--1521561 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1521514 TAGCATTCTC
*
1521524 TGTATCGATACAT
1 TGTATCGATACAG
1521537 TGTATCGATACAG
1 TGTATCGATACAG
1521550 TGTATCGATACA
1 TGTATCGATACA
1521562 AAGGAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1521727 original size:20 final size:20
Alignment explanation
Indices: 1521692--1521732 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
1521682 CAAATTTCTT
1521692 GTTTTTCATTTCAAAATACATC
1 GTTTTTCA-TTCAAAAT-CATC
1521714 GTTTTTCA-TCAAAATCATC
1 GTTTTTCATTCAAAATCATC
1521733 AACAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.44
Consensus pattern (20 bp):
GTTTTTCATTCAAAATCATC
Found at i:1522025 original size:20 final size:21
Alignment explanation
Indices: 1521993--1522044 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
1521983 CCCCTAGGCA
*
1521993 GCACCCACCAGGTCGCGACC-G
1 GCACCC-CCAGGTCGCAACCGG
1522014 GCACCCCCAGGTCGCAACCGG
1 GCACCCCCAGGTCGCAACCGG
1522035 GCAGCCCCCA
1 GCA-CCCCCA
1522045 CCCTAACAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 12 0.43
21 10 0.36
22 6 0.21
ACGTcount: A:0.19, C:0.50, G:0.27, T:0.04
Consensus pattern (21 bp):
GCACCCCCAGGTCGCAACCGG
Found at i:1524012 original size:13 final size:13
Alignment explanation
Indices: 1523994--1524018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1523984 ATATTGCACA
1523994 GTATCGATACATT
1 GTATCGATACATT
1524007 GTATCGATACAT
1 GTATCGATACAT
1524019 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1524031 original size:20 final size:21
Alignment explanation
Indices: 1524006--1524058 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
1523996 ATCGATACAT
**
1524006 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
1524026 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
1524047 TGTATCGATACA
1 TGTATCGATACA
1524059 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Done.