Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1600
Parameters: 2 7 7 80 10 50 1000
Length:  45951

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2823--2880
22
2.5
23
80
5
64
39
1
1
56
1.19
2928--2958
2
15.5
2
93
0
53
45
0
3
51
1.17
3685--3713
6
4.8
6
100
0
58
86
0
0
13
0.58
4453--4560
52
2.1
53
92
1
182
37
12
10
39
1.76
5211--5454
129
1.9
127
86
6
350
36
5
4
54
1.44
7937--8305
155
2.4
154
78
6
399
23
17
21
37
1.94
10525--10550
13
2.0
13
100
0
52
30
15
15
38
1.88
10621--10675
20
2.8
20
88
5
76
29
12
16
41
1.85
12628--12670
20
2.1
20
86
4
59
9
30
44
16
1.79
13111--13149
13
3.0
13
96
0
69
35
15
17
30
1.91
15223--15260
15
2.5
15
91
0
58
13
21
15
50
1.78
19330--19355
13
2.0
13
100
0
52
30
15
15
38
1.88
19426--19480
20
2.8
20
88
5
76
29
12
16
41
1.85
19821--19858
18
2.2
17
86
9
51
42
2
2
52
1.29
21794--22036
118
2.1
118
93
0
414
43
15
5
35
1.69
22197--22226
15
2.1
15
93
6
53
73
20
0
6
1.05
37027--37065
2
20.0
2
94
5
71
48
0
0
51
1.00
37634--37670
18
2.1
17
90
5
56
81
2
16
0
0.81
40655--40733
29
2.7
29
86
2
104
51
5
10
32
1.57
41136--41165
14
2.1
14
93
0
51
76
0
3
20
0.92
41934--41970
17
2.3
17
86
9
51
48
8
0
43
1.32
41963--42002
20
2.1
19
85
4
53
57
0
5
37
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42349--42437
46
1.9
46
84
13
121
43
1
3
51
1.25
43922--43971
22
2.1
24
89
10
77
56
0
0
44
0.99
44680--44716
19
1.9
19
100
0
74
29
5
0
64
1.15
45460--45498
20
2.0
20
94
0
69
28
17
15
38
1.91

Tables:   1

The End!