Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1601

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7480
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36


Found at i:1861 original size:30 final size:30

Alignment explanation


    Indices: 1827--1897  Score: 124
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       1817 GATGTTTCAT

                                          
       1827 GTATTTTAGATCCATTTTAATACCTTTTAA
          1 GTATTTTAGATCCATTTTAATACCTTTTAA

                       *                  
       1857 GTATTTTAGATGCATTTTAATACCTTTTAA
          1 GTATTTTAGATCCATTTTAATACCTTTTAA

               *       
       1887 GTACTTTAGAT
          1 GTATTTTAGAT

       1898 TGTTTAGATC


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  30   39  1.00

ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49


Consensus pattern (30 bp):   
GTATTTTAGATCCATTTTAATACCTTTTAA
Done.