Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1603
Parameters: 2 7 7 80 10 50 1000
Length:  55208

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5549--5583
16
2.1
17
89
5
54
82
0
17
0
0.66
5555--5584
10
3.0
10
95
0
51
86
0
13
0
0.57
5947--5985
2
19.5
2
94
0
69
46
0
2
51
1.14
12015--12095
36
2.3
35
81
10
85
71
9
13
4
1.28
13426--14191
27
27.9
27
89
3
1093
23
33
13
29
1.93
13426--14191
55
14.0
54
90
2
1093
23
33
13
29
1.93
13426--14191
82
9.3
81
88
3
1084
23
33
13
29
1.93
14177--14684
32
15.8
32
92
2
804
31
33
19
16
1.94
15922--15955
15
2.1
17
89
10
54
82
0
17
0
0.67
25509--25541
2
16.5
2
100
0
66
51
0
0
48
1.00
26200--26263
13
5.0
13
70
16
53
37
1
0
60
1.06
27249--27281
2
16.0
2
93
6
57
48
3
0
48
1.17
28784--28842
29
2.0
31
83
6
77
42
5
1
50
1.34
30265--30304
18
2.1
20
86
9
57
50
10
0
40
1.36
31299--31333
16
2.2
16
94
0
61
34
17
5
42
1.73
31597--31640
19
2.3
19
84
11
54
43
0
0
56
0.99
31596--31642
15
3.1
15
79
8
51
40
0
0
59
0.97
32495--32554
20
3.2
20
77
17
65
43
3
1
51
1.28
32760--32805
22
2.1
22
88
8
67
34
4
0
60
1.16
33220--33245
7
3.7
7
100
0
52
46
0
0
53
1.00
33752--33822
32
2.2
32
80
5
81
43
1
0
54
1.08
33961--34000
2
20.5
2
94
5
73
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34098--34131
15
2.2
16
94
5
61
76
0
0
23
0.79
34414--34452
9
4.1
10
80
12
55
35
0
0
64
0.94
34417--34478
18
3.2
18
82
13
70
30
1
0
67
1.00
34660--34710
27
1.9
26
84
4
66
62
1
0
35
1.06
34983--35022
19
2.1
19
86
9
55
40
5
2
52
1.37
35014--35063
14
3.4
15
78
10
50
50
0
0
50
1.00
35033--35081
25
2.0
25
84
8
64
46
0
4
48
1.20
35650--35735
37
2.2
38
80
15
97
51
1
0
47
1.08
36889--36954
22
3.1
22
74
23
61
51
0
0
48
1.00
37495--37549
14
3.8
15
76
13
62
43
0
0
56
0.99
37658--37704
19
2.3
21
82
10
62
40
0
0
59
0.97
40054--40080
14
1.9
14
100
0
54
14
7
0
77
0.97
41302--41399
28
3.5
27
77
12
81
52
4
1
42
1.27
43075--43142
29
2.4
28
79
16
70
36
2
4
55
1.35
44853--44913
17
3.4
18
72
14
54
52
0
0
47
1.00
47211--47577
184
2.0
183
82
4
452
31
16
13
37
1.89
49409--49438
5
5.8
5
96
4
51
40
0
0
60
0.97
49599--49650
18
2.8
18
88
2
68
34
0
1
63
1.06
49620--49654
18
1.9
18
88
0
52
40
0
2
57
1.14
49619--49662
20
2.2
20
84
8
54
43
0
2
54
1.12
50058--50096
18
2.2
17
90
4
60
10
5
0
84
0.76

Tables:   1

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