genome.fa.s1604.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1604
Parameters: 2 7 7 80 10 50 1000
Length:  83405

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6229--6289	19	3.4	19	70	21	67	42	3	19	34	1.68
6231--6300	35	2.0	35	100	0	140	42	2	20	34	1.66
6240--6297	19	3.2	19	68	22	61	46	1	20	31	1.61
7034--7176	70	2.0	70	95	0	259	31	17	15	35	1.91
11758--12132	187	2.0	187	98	0	723	27	16	17	38	1.91
12126--12195	20	3.5	19	77	11	70	35	12	18	32	1.89
16975--17090	56	2.1	55	83	3	144	62	12	12	12	1.56
18428--18570	66	2.2	64	83	7	173	20	23	14	40	1.90
20083--20107	13	1.9	13	100	0	50	32	0	12	56	1.36
20113--20154	22	2.1	19	86	13	57	42	4	0	52	1.22
23300--23352	21	2.5	20	77	14	54	22	32	0	45	1.53
25498--25603	30	3.5	29	70	13	88	28	16	16	38	1.90
25545--25574	13	2.3	13	94	0	51	33	16	10	40	1.82
25495--25623	62	2.1	63	91	1	206	28	17	14	39	1.89
27813--27938	50	2.5	49	81	7	146	29	23	10	37	1.88
27814--27938	49	2.5	50	80	7	146	29	23	9	37	1.86
27895--28253	79	4.5	79	80	4	359	27	25	13	33	1.94
27880--28253	158	2.4	158	79	5	402	27	25	13	33	1.93
34004--34061	20	3.0	20	84	2	73	29	10	13	46	1.77
34102--34126	13	1.9	13	100	0	50	32	16	16	36	1.90
44198--44238	16	2.4	16	88	8	55	85	12	2	0	0.70
44181--44238	21	2.7	22	78	7	66	84	8	3	3	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45320--45454	55	2.5	54	83	4	164	28	26	22	22	1.99
45351--46780	61	23.8	61	85	4	1713	25	27	20	26	1.99
47386--47509	20	5.7	20	74	19	79	27	13	14	44	1.83
47436--47510	20	3.8	20	90	0	114	29	14	12	44	1.81
49795--49918	50	2.5	50	82	6	135	25	20	16	38	1.92
49937--50056	51	2.4	51	82	0	132	25	26	15	32	1.95
49988--50207	78	2.8	79	78	6	189	28	23	14	34	1.94
49808--50132	129	2.5	129	83	4	370	27	22	14	36	1.93
50026--50207	78	2.3	79	82	6	210	29	21	13	36	1.91
50026--50215	79	2.4	77	81	6	220	27	22	13	36	1.92
51131--51192	33	1.9	33	86	3	90	40	19	14	25	1.90
57258--57329	20	3.7	19	81	7	74	29	18	15	37	1.91
61109--61138	9	3.3	9	90	0	51	23	33	0	43	1.54
66551--66590	20	2.0	20	95	0	71	20	22	17	40	1.92
68228--68599	57	6.5	58	78	6	301	27	11	12	48	1.76
68228--68588	115	3.1	112	78	7	305	26	11	13	48	1.75
70630--70748	58	2.1	58	91	0	193	37	13	13	35	1.84
72524--72578	21	2.6	21	88	5	76	18	52	12	16	1.74
74494--74524	2	15.5	2	100	0	62	51	0	0	48	1.00
75320--75474	72	2.2	71	81	8	179	47	5	7	40	1.55
79852--79877	13	2.0	13	100	0	52	38	15	15	30	1.88
79834--79897	32	2.0	33	87	3	94	40	17	14	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82099--82154	21	2.6	22	75	13	64	55	7	14	23	1.63

Tables:   1

The End!