genome.fa.s1607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1607
Parameters: 2 7 7 80 10 50 1000
Length:  65751

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2818--2843	13	2.0	13	100	0	52	38	15	15	30	1.88
2800--2863	33	2.0	32	90	3	101	39	20	14	26	1.90
13582--13852	28	9.6	28	83	4	303	29	27	16	26	1.97
13585--13852	86	3.2	85	84	2	351	29	27	16	25	1.97
13582--13852	56	4.8	57	83	6	354	29	27	16	26	1.97
15077--15126	20	2.6	20	87	6	68	74	0	24	2	0.93
15077--15135	19	3.1	18	82	7	64	76	0	22	1	0.88
15742--16368	315	2.0	314	92	0	1040	27	19	15	37	1.92
23232--23256	13	1.9	13	100	0	50	32	16	16	36	1.90
23212--23279	33	2.1	33	89	8	104	36	16	14	32	1.89
31980--32004	13	1.9	13	100	0	50	32	16	16	36	1.90
31960--32027	33	2.1	33	89	8	104	36	16	14	32	1.89
35525--35653	52	2.5	52	97	0	240	27	17	18	35	1.94
35727--35792	32	2.0	33	91	2	107	37	16	10	34	1.83
45599--45675	20	3.8	20	89	1	118	29	11	15	42	1.82
45599--45675	41	1.9	40	89	2	118	29	11	15	42	1.82
45693--45822	19	7.7	19	65	28	89	37	18	10	33	1.84
45691--45820	32	4.0	32	96	1	233	36	18	10	34	1.84
47026--47059	14	2.3	15	90	5	52	82	8	5	2	0.93
47026--47073	15	3.3	14	83	13	53	81	6	10	2	0.95
48132--49093	61	16.0	61	83	6	1098	25	27	19	27	1.99
48132--49093	123	8.0	122	86	5	1189	25	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52550--52577	13	2.2	13	100	0	56	39	17	14	28	1.89
52629--52713	19	4.7	19	73	20	83	34	16	12	36	1.87
52616--52691	32	2.4	32	93	0	125	35	17	13	34	1.88
53550--53671	49	2.4	50	79	4	129	31	18	26	22	1.97
53736--53894	39	3.9	39	79	11	174	27	20	24	28	1.99
53597--53950	87	4.0	86	83	5	404	29	18	24	27	1.98
53958--54098	43	3.1	43	76	15	158	34	16	23	26	1.95
53860--54109	49	5.1	49	77	11	237	34	17	23	24	1.96
53909--54098	92	2.0	94	86	2	267	35	16	23	24	1.95
53824--54093	143	1.9	141	84	7	366	33	18	22	25	1.96
54130--54281	35	4.5	35	86	6	183	35	13	36	14	1.86
54103--54420	34	9.8	34	76	13	217	33	14	34	18	1.91
54201--54448	27	8.3	27	74	17	163	32	14	33	19	1.92
54299--54507	34	6.6	33	72	15	138	32	14	33	20	1.93
54166--54475	61	5.0	61	82	6	354	32	14	34	19	1.91
54166--54475	122	2.5	124	86	4	446	32	14	34	19	1.91
54447--54736	62	4.7	61	83	5	341	35	14	28	20	1.93
54448--54736	31	9.2	31	80	7	307	35	14	28	20	1.93
54448--54739	126	2.3	124	85	4	388	35	14	28	20	1.93
56016--56074	7	8.3	7	78	17	68	0	0	16	83	0.66
56020--56076	17	3.2	18	85	9	66	0	0	19	80	0.71
56016--56079	20	3.0	22	73	19	71	0	0	18	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62399--62475	22	3.6	22	82	7	113	25	25	10	37	1.88
62421--62481	10	5.9	10	74	14	61	24	27	9	37	1.87
62398--62479	42	2.0	42	100	0	164	25	26	9	37	1.87
62986--63050	35	2.0	33	88	11	98	33	12	23	30	1.91
64251--64316	33	2.0	33	84	0	87	39	13	15	31	1.86
64342--64410	32	2.2	32	89	0	102	37	17	11	33	1.86
65409--65544	45	3.0	45	100	0	272	31	26	4	37	1.76

Tables:   1

The End!