genome.fa.s1609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1609
Parameters: 2 7 7 80 10 50 1000
Length:  69996

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111--1135	13	1.9	13	100	0	50	36	16	16	32	1.90
1091--1160	33	2.1	33	89	0	104	34	11	14	40	1.82
1199--1344	52	2.8	53	88	4	199	35	18	16	29	1.93
9455--9606	31	4.9	30	85	9	182	23	29	16	30	1.96
9455--9708	34	8.0	31	86	10	205	22	32	14	30	1.94
9452--9575	62	2.0	63	92	4	207	23	27	16	32	1.96
9455--10241	102	7.9	96	78	13	342	20	33	13	32	1.92
9548--10316	34	22.8	33	82	10	687	20	32	12	33	1.90
10319--10454	32	4.2	33	88	4	197	29	37	15	17	1.91
10322--10461	31	4.4	32	88	5	196	30	37	15	16	1.90
10327--10450	63	1.9	65	90	3	198	32	37	16	13	1.88
10454--11710	49	26.6	49	82	7	1532	24	25	18	31	1.97
10549--11713	92	12.4	92	89	4	1747	24	25	18	31	1.97
10449--11713	190	6.7	190	90	2	2007	24	25	17	31	1.97
14808--14874	33	2.0	33	88	0	98	34	11	13	40	1.81
14828--14852	13	1.9	13	100	0	50	36	16	16	32	1.90
14948--15067	52	2.3	52	94	2	206	35	17	17	30	1.93
28948--29022	20	3.8	20	80	0	96	44	10	12	33	1.76
35854--35879	13	2.0	13	100	0	52	38	15	15	30	1.88
38094--38138	21	2.1	21	84	8	56	53	4	20	22	1.63
39942--39972	15	2.1	15	93	0	53	48	16	22	12	1.80
42052--42090	13	3.0	13	100	0	78	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42211--42256	21	2.2	20	81	11	58	32	19	4	43	1.71
44646--44671	13	2.0	13	100	0	52	38	15	15	30	1.88
46474--47435	42	23.0	42	80	1	732	15	30	17	36	1.91
46474--47433	125	7.6	125	81	2	926	15	30	17	36	1.91
46474--47435	167	5.7	166	82	4	977	15	30	17	36	1.91
48011--48315	138	2.2	138	93	1	522	48	13	22	14	1.79
52336--52376	16	2.5	17	80	11	50	46	2	2	48	1.28
54787--54824	20	1.9	20	94	0	67	31	21	10	36	1.87
61834--61881	16	3.1	16	80	20	57	70	10	14	4	1.29
63163--63752	27	21.5	27	84	7	431	25	31	14	27	1.95
63162--63657	109	4.5	109	85	5	612	24	31	14	29	1.95
63162--63657	136	3.6	136	82	7	574	24	31	14	29	1.95
63181--64400	56	21.2	56	83	6	729	27	30	17	24	1.97
63553--64213	32	22.1	31	85	6	562	30	30	18	20	1.96
63498--64400	28	30.8	28	84	5	637	29	30	18	22	1.97
63570--64112	129	4.5	128	87	5	579	30	30	18	19	1.96
64471--64641	45	3.7	45	75	5	164	23	25	16	33	1.96
64525--64655	45	2.8	47	76	6	131	25	26	12	35	1.92
64505--64681	47	3.7	47	77	8	182	23	26	16	33	1.95
68651--68726	20	3.8	20	78	5	73	40	11	13	34	1.81
69255--69946	33	21.1	32	87	8	914	14	18	34	32	1.91
69255--69946	65	10.6	64	88	7	914	14	18	34	32	1.91

Tables:   1

The End!