Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1610
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 159875
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
File 1 of 2
Found at i:4123 original size:43 final size:43
Alignment explanation
Indices: 4060--4158 Score: 180
Period size: 43 Copynumber: 2.3 Consensus size: 43
4050 CTCTCAAGTT
*
4060 GCCCTTGCGAGTTCTCAACCCTAGTTGACTTAATGATCCACAC
1 GCCCTTGCGAGTTCTCAACCCCAGTTGACTTAATGATCCACAC
*
4103 GCCCTTGCGAGTTCTGAACCCCAGTTGACTTAATGATCCACAC
1 GCCCTTGCGAGTTCTCAACCCCAGTTGACTTAATGATCCACAC
4146 GCCCTTGCGAGTT
1 GCCCTTGCGAGTT
4159 TTCATCCAGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.27
Consensus pattern (43 bp):
GCCCTTGCGAGTTCTCAACCCCAGTTGACTTAATGATCCACAC
Found at i:18114 original size:52 final size:52
Alignment explanation
Indices: 18040--18175 Score: 195
Period size: 52 Copynumber: 2.6 Consensus size: 52
18030 ATTTTGCTTG
18040 CATGTATCGATAC-ATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTA
1 CATGTATCGATACAATTT-ATAGTGTATCGATACATCTGGGCAAATTTGCCTA
* * *
18092 TATGTATCGATACAATTTATAGTGTATCGATACATTTGGGCAAATTTGCCTG
1 CATGTATCGATACAATTTATAGTGTATCGATACATCTGGGCAAATTTGCCTA
**
18144 CATGTATCGATACAA-AGATCAGTGTATCGATA
1 CATGTATCGATACAATTTAT-AGTGTATCGATA
18176 AATGTATCGA
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
51 2 0.03
52 70 0.92
53 4 0.05
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (52 bp):
CATGTATCGATACAATTTATAGTGTATCGATACATCTGGGCAAATTTGCCTA
Found at i:18256 original size:19 final size:18
Alignment explanation
Indices: 18232--18329 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
18222 TAGCTTACAT
18232 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
18251 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
18264 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
18283 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
18296 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
18316 TGTATCGATACAAA
1 TGTATCGATACAAA
18330 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:18268 original size:32 final size:32
Alignment explanation
Indices: 18227--18327 Score: 184
Period size: 32 Copynumber: 3.1 Consensus size: 32
18217 GGCAGTAGCT
*
18227 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
18259 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
18291 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
18324 TACA
1 TACA
18328 AATCGTTGAA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 52 0.78
33 15 0.22
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:18269 original size:13 final size:13
Alignment explanation
Indices: 18251--18307 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
18241 ACAAAACTTA
18251 TGTATCGATACAT
1 TGTATCGATACAT
18264 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
18282 ATGTATCGATACAT
1 -TGTATCGATACAT
18296 TGTATCGATACA
1 TGTATCGATACA
18308 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20669 original size:21 final size:22
Alignment explanation
Indices: 20631--20671 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
20621 TAAGGATTAA
*
20631 AGAGAGAATAATTGAGAATTTG
1 AGAGAGAATAACTGAGAATTTG
20653 AGAGAGAA-AACTGAGAATT
1 AGAGAGAATAACTGAGAATT
20672 AGAAGAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.49, C:0.02, G:0.27, T:0.22
Consensus pattern (22 bp):
AGAGAGAATAACTGAGAATTTG
Found at i:20741 original size:24 final size:23
Alignment explanation
Indices: 20708--20754 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 23
20698 AAAGATAGTG
20708 TTTTCAGTAATTTCCATTCATTT
1 TTTTCAGTAATTTCCATTCATTT
20731 TTTTCTAGTAATTTCCATTCATTT
1 TTTTC-AGTAATTTCCATTCATTT
20755 CTTCAACAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.21, C:0.17, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTTCAGTAATTTCCATTCATTT
Found at i:24248 original size:20 final size:20
Alignment explanation
Indices: 24223--24290 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
24213 AGTAGCTACC
24223 AATGTATCGATACATGAAGA
1 AATGTATCGATACATGAAGA
24243 AATGTATCGATACAT-----
1 AATGTATCGATACATGAAGA
*
24258 --TGTATCAATACATGAAGA
1 AATGTATCGATACATGAAGA
24276 AATGTATCGATACAT
1 AATGTATCGATACAT
24291 TGCTTGTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
13 12 0.31
20 27 0.69
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATGAAGA
Found at i:24269 original size:33 final size:33
Alignment explanation
Indices: 24225--24292 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
24215 TAGCTACCAA
*
24225 TGTATCGATACATGAAGAAATGTATCGATACAT
1 TGTATCAATACATGAAGAAATGTATCGATACAT
24258 TGTATCAATACATGAAGAAATGTATCGATACAT
1 TGTATCAATACATGAAGAAATGTATCGATACAT
24291 TG
1 TG
24293 CTTGTAATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.31
Consensus pattern (33 bp):
TGTATCAATACATGAAGAAATGTATCGATACAT
Found at i:29854 original size:13 final size:13
Alignment explanation
Indices: 29836--29860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29826 CAAAGATCAG
29836 TGTATCGATACAA
1 TGTATCGATACAA
29849 TGTATCGATACA
1 TGTATCGATACA
29861 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:29938 original size:33 final size:33
Alignment explanation
Indices: 29901--29967 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
29891 AGTAGCTTAA
29901 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
29934 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
29967 A
1 A
29968 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:29941 original size:13 final size:13
Alignment explanation
Indices: 29923--29947 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29913 CAAAAAAATA
29923 TGTATCGATACAT
1 TGTATCGATACAT
29936 TGTATCGATACA
1 TGTATCGATACA
29948 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:31108 original size:49 final size:49
Alignment explanation
Indices: 30899--31702 Score: 972
Period size: 49 Copynumber: 17.0 Consensus size: 49
30889 AAAAGGATGT
* *
30899 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAAAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGC
* * *
30951 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
30994 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
31042 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
31091 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACGTAAAGA-GAAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AAGGTGC
* *
31140 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
31189 CAATATGCTGATTCAAGGCCAG-TGATATTGGACTT--A-A--AA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATGAAGGTGC
* * *
31232 CAATGTGCTGATTCAAGGCCAGCTACATCGGACTTAAAGATAAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
31281 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
31324 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* **
31373 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
31422 CAATATGCTGATTCGAGGCCAGCTATATCGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
31465 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTTAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
31514 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
31557 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
31606 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
31655 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTG
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTG
31703 AGAAAAGTGA
Statistics
Matches: 664, Mismatches: 53, Indels: 73
0.84 0.07 0.09
Matches are distributed among these distances:
43 179 0.27
44 7 0.01
45 4 0.01
46 6 0.01
47 4 0.01
48 55 0.08
49 376 0.57
50 1 0.00
52 32 0.05
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:31287 original size:92 final size:93
Alignment explanation
Indices: 30942--31692 Score: 851
Period size: 92 Copynumber: 8.0 Consensus size: 93
30932 TTAAAGATGA
* * *
30942 AAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----TAAAGGTGTCAATGTG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTG
*
31001 CTGATTCAAGGCCAGCTACATTGGACTT
66 CTGAGTCAAGGCCAGCTACATTGGACTT
* *
31029 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAA
1 AAA----AGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
*
31094 TGTGCTGAGTCAAGGCCAGCTACATTGGACGT
62 TGTGCTGAGTCAAGGCCAGCTACATTGGACTT
* *
31126 AAAGAGAAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCA
1 AAA-AG---G-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCA
* * *
31191 ATATGCTGATTCAAGGCCAG-TGATATTGGACTT
61 ATGTGCTGAGTCAAGGCCAGCT-ACATTGGACTT
* * * *
31224 AAAA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATCGGACTTAAAGATAAATGTGCCAATATG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTG
* * *
31288 CTGATTCAAGGCCAGCGATATTGGACTT
66 CTGAGTCAAGGCCAGCTACATTGGACTT
* *
31316 AAAA-GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTG
31380 CTGAGTCAAGGCCAGCTACATTGGACTT
66 CTGAGTCAAGGCCAGCTACATTGGACTT
* * *
31408 AAAGAAAAAGGTGCCAATATGCTGATTCGAGGCCAGCTATATCGGAC-T-----TAAAGGTGCCA
1 -----AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCA
31467 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTT
61 ATGTGCTGAGTCAAGGCCAGCTACATTGGAC-TT
* *
31501 AAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAA-GTGCCAA
1 ---A-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
31560 TGTGCTGAGTCAAGGCCAGCTACATTGGACTT
62 TGTGCTGAGTCAAGGCCAGCTACATTGGACTT
* * * * *
31592 AAAGATAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGGTGAAGGTGCCA
1 ----A-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCA
31657 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
61 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
31690 AAA
1 AAA
31693 GATGAAGGTG
Statistics
Matches: 588, Mismatches: 43, Indels: 60
0.85 0.06 0.09
Matches are distributed among these distances:
87 3 0.01
91 40 0.07
92 326 0.55
93 9 0.02
94 4 0.01
97 53 0.09
98 153 0.26
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (93 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTG
CTGAGTCAAGGCCAGCTACATTGGACTT
Found at i:31816 original size:55 final size:52
Alignment explanation
Indices: 31714--32140 Score: 248
Period size: 49 Copynumber: 8.7 Consensus size: 52
31704 GAAAAGTGAT
* * * * * ** *
31714 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATG-G-A
* *
31768 AAATGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
1 AAA-GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
* * *
31821 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT------T---
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
* * * * * *
31864 AAAGGTGTCAATGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
* * *
31913 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT------T---
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
* * * * * *
31956 AAAGGTGCCAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGAT---
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
* * * * *
32005 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
* * * ** *
32055 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGAT---
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
* *
32103 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTG
32141 GGCTTAGAAG
Statistics
Matches: 316, Mismatches: 40, Indels: 39
0.80 0.10 0.10
Matches are distributed among these distances:
43 76 0.24
46 1 0.00
49 160 0.51
52 34 0.11
53 4 0.01
54 4 0.01
55 37 0.12
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGA
Found at i:31939 original size:49 final size:49
Alignment explanation
Indices: 31777--32146 Score: 449
Period size: 49 Copynumber: 7.7 Consensus size: 49
31767 AAAATGATGT
* * *
31777 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGC
* *
31829 CAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----TAAAGGTGT
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
* * *
31872 CAATGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
*
31921 CAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----TAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
* * *
31964 CAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
* * *
32013 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
* * *
32062 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
* *
32111 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
32147 GAAGGGTTGC
Statistics
Matches: 272, Mismatches: 34, Indels: 27
0.82 0.10 0.08
Matches are distributed among these distances:
43 74 0.27
44 2 0.01
46 1 0.00
48 1 0.00
49 164 0.60
52 30 0.11
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
Found at i:31948 original size:92 final size:93
Alignment explanation
Indices: 31777--32151 Score: 565
Period size: 92 Copynumber: 4.0 Consensus size: 93
31767 AAAATGATGT
* * *
31777 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTCAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGA---AAAAGGTGCCAATATGCTGATT
*
31842 CAAGGCCAGCTATATTGGACTTA-AAGGTGT
63 CAAGGCCAGCTATATTGGACTTAGAAGGTGC
* *
31872 CAATGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
31937 GGCCAGCTATATTGGACTTA-AAGGTGC
66 GGCCAGCTATATTGGACTTAGAAGGTGC
* *
31964 CAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
32029 GGCCAGCTATATTGGACTTAATGATGAAGGTGC
66 GGCCAGCTATATTGGAC-T--T-A-GAAGGTGC
* *
32062 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
*
32127 GGCCAGCTATATTGGGCTTAGAAGG
66 GGCCAGCTATATTGGACTTAGAAGG
32152 GTTGCCACTG
Statistics
Matches: 263, Mismatches: 11, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
92 129 0.49
93 6 0.02
94 1 0.00
95 39 0.15
96 1 0.00
97 1 0.00
98 86 0.33
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (93 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAGAAGGTGC
Found at i:32216 original size:31 final size:32
Alignment explanation
Indices: 32139--32469 Score: 467
Period size: 31 Copynumber: 10.3 Consensus size: 32
32129 CCAGCTATAT
*
32139 TGGGC-TTAGA-AGGGTTGCCACTGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
32169 TGGGCTTTAGAGAGGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
32201 TGGGCTTT-GAGAGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
32232 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
1 TGGGCTTTAGAG-AGGG-TTGCCACCGACTTGTG
* *
32266 TGGGCTTT-GAGGGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
32297 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
1 TGGGCTTTAGAG-AGGG-TTGCCACCGACTTGTG
* *
32331 TGGGCTTT-GAGGGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
32362 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
1 TGGGCTTTAGAG-AGGG-TTGCCACCGACTTGTG
* *
32396 TGGGCTTT-GAGGGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
32427 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
1 TGGGCTTTAGAG-AGGG-TTGCCACCGACTTGTG
32461 TGGGCTTTA
1 TGGGCTTTA
32470 AAAAGGTATT
Statistics
Matches: 270, Mismatches: 17, Indels: 24
0.87 0.05 0.08
Matches are distributed among these distances:
30 5 0.02
31 103 0.38
32 47 0.17
33 22 0.08
34 93 0.34
ACGTcount: A:0.16, C:0.18, G:0.37, T:0.30
Consensus pattern (32 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
Found at i:32285 original size:65 final size:65
Alignment explanation
Indices: 32150--32468 Score: 588
Period size: 65 Copynumber: 4.9 Consensus size: 65
32140 GGGCTTAGAA
** * *
32150 GGGTTGCCACTGACTTGTGTGGGCTTTAGAG-AGGG-TTGCCATCGACTTGTGTGGGCTTTGAGA
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
32213 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
32278 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
32343 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
32408 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTT
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTT
32469 AAAAAGGTAT
Statistics
Matches: 250, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
63 29 0.12
64 4 0.02
65 217 0.87
ACGTcount: A:0.15, C:0.18, G:0.37, T:0.30
Consensus pattern (65 bp):
GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTGTGGGCTTTGAGG
Found at i:40791 original size:13 final size:13
Alignment explanation
Indices: 40773--40797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40763 CAAAGATCAG
40773 TGTATCGATACAA
1 TGTATCGATACAA
40786 TGTATCGATACA
1 TGTATCGATACA
40798 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:40875 original size:33 final size:33
Alignment explanation
Indices: 40838--40904 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
40828 AGTAGCTTAA
40838 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
40871 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
40904 A
1 A
40905 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:40878 original size:13 final size:13
Alignment explanation
Indices: 40860--40884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40850 CAAAAAAATA
40860 TGTATCGATACAT
1 TGTATCGATACAT
40873 TGTATCGATACA
1 TGTATCGATACA
40885 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41634 original size:15 final size:15
Alignment explanation
Indices: 41614--41642 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
41604 AAAGAATCCC
41614 ATTTTTAATCTTGAT
1 ATTTTTAATCTTGAT
41629 ATTTTTAATCTTGA
1 ATTTTTAATCTTGA
41643 AGTTATTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (15 bp):
ATTTTTAATCTTGAT
Found at i:42453 original size:23 final size:23
Alignment explanation
Indices: 42425--42481 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
42415 CACAAGCTTG
*
42425 TGTATCGATACAAGTCTATGAAA
1 TGTATCGATACAAGTCTATAAAA
42448 TGTATCGATACAAGTCTATAAAA
1 TGTATCGATACAAGTCTATAAAA
42471 TGTATCGATAC
1 TGTATCGATAC
42482 CCAGTATGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (23 bp):
TGTATCGATACAAGTCTATAAAA
Found at i:45114 original size:88 final size:88
Alignment explanation
Indices: 44971--45154 Score: 219
Period size: 88 Copynumber: 2.1 Consensus size: 88
44961 TTAATCTTTA
* * * * * *
44971 GGGAAACTCCATCTCCACTCCTCTAAGGGGACACTCTAACCCTGTTCTAGCAAAAATTAAAATTT
1 GGGAAACTACATCTCCACTCCTCTAAAGGGACACTCCAACCCTGCTCTAGAAAAAAATAAAATTT
*
45036 TTCTCCATACAATTTCATCCTTG
66 TCCTCCATACAATTTCATCCTTG
* *
45059 GGGAAACTACATC-CCTACTCCTCTAAAGGGACACTCCAACGCTGCTCTTA-AAAAAAATCAAAT
1 GGGAAACTACATCTCC-ACTCCTCTAAAGGGACACTCCAACCCTGCTC-TAGAAAAAAATAAAAT
* * * *
45122 TTTCCTTCGTATAATTTTATCCTTG
64 TTTCCTCCATACAATTTCATCCTTG
45147 GGGAAACT
1 GGGAAACT
45155 CTAACCTTAC
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
87 2 0.02
88 77 0.95
89 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (88 bp):
GGGAAACTACATCTCCACTCCTCTAAAGGGACACTCCAACCCTGCTCTAGAAAAAAATAAAATTT
TCCTCCATACAATTTCATCCTTG
Found at i:50873 original size:15 final size:15
Alignment explanation
Indices: 50853--50883 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50843 AAGGTGTTCG
50853 ATCTCAATATGAGCA
1 ATCTCAATATGAGCA
50868 ATCTCAATATGAGCA
1 ATCTCAATATGAGCA
50883 A
1 A
50884 GATAGGACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (15 bp):
ATCTCAATATGAGCA
Found at i:54830 original size:13 final size:13
Alignment explanation
Indices: 54812--54836 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
54802 TTCAATGATT
54812 TGTATCGATACAA
1 TGTATCGATACAA
54825 TGTATCGATACA
1 TGTATCGATACA
54837 CAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:54849 original size:19 final size:19
Alignment explanation
Indices: 54825--54874 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
54815 ATCGATACAA
54825 TGTATCGATACACAAGTGT
1 TGTATCGATACACAAGTGT
* *
54844 TGTATCGATACATAAGTTT
1 TGTATCGATACACAAGTGT
54863 TGTATCGATACA
1 TGTATCGATACA
54875 ATGTATCACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (19 bp):
TGTATCGATACACAAGTGT
Found at i:54944 original size:13 final size:13
Alignment explanation
Indices: 54926--54950 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
54916 ATTACTCAAA
54926 TGTATCGATACAT
1 TGTATCGATACAT
54939 TGTATCGATACA
1 TGTATCGATACA
54951 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:63294 original size:33 final size:33
Alignment explanation
Indices: 63236--63437 Score: 209
Period size: 33 Copynumber: 6.2 Consensus size: 33
63226 TCTTCAAATA
*
63236 CCTTTTAAAGTCCACAACTCCGTGGCACCTTGTT
1 CCTTTT-AAGTCCACAACTCCGTGGCACCTTTTT
* ** *
63270 CCTTTTAAGTCCATAACTTTGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
63303 CCATCTAAGTCCACGACTCCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
63336 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTT
*
63371 CCCTTTTAAGTCCACAACTTCGTGGCACC----T
1 -CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
63401 --TTTTAAGTCCACAACTCCGTGGCATCTTTCT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
63432 CCTTTT
1 CCTTTT
63438 CAAAAGCCCA
Statistics
Matches: 137, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
27 24 0.18
30 1 0.01
31 1 0.01
33 55 0.40
34 26 0.19
35 25 0.18
36 5 0.04
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.37
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
Found at i:63409 original size:27 final size:27
Alignment explanation
Indices: 63374--63429 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
63364 TCTTTTTCCC
*
63374 TTTTAAGTCCACAACTTCGTGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
*
63401 TTTTAAGTCCACAACTCCGTGGCATCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
63428 TT
1 TT
63430 CTCCTTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCT
Found at i:63438 original size:102 final size:98
Alignment explanation
Indices: 63238--63465 Score: 266
Period size: 100 Copynumber: 2.3 Consensus size: 98
63228 TTCAAATACC
* * * *
63238 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCATAACTTTGTGGCATCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTCGTGGCATCTCTTT
*
63303 CCATCTAAGTCCACGACTCCGTGGCACCTTTTTCT
66 -C-TCTAAGTCCACAACTCCGTGGCACCTTTTTCT
*
63338 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTTCGTGGCA-C-CT
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTGTT-CCTTTTAAGTCCACAACTTCGTGGCATCTCT
* *
63401 TT-T-TAAGTCCACAACTCCGTGGCATCTTTCTCCT
64 TTCTCTAAGTCCACAACTCCGTGGCACCTTT-TTCT
* * *
63435 TTTCAAAAGCCCACAAGTCAGTGGCAACCTT
1 TTT-TAAAGCCCACAACTCCGTGGC-ACCTT
63466 CAAAAGCCCA
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
96 24 0.21
97 7 0.06
98 21 0.19
99 2 0.02
100 28 0.25
101 6 0.05
102 24 0.21
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.35
Consensus pattern (98 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTCGTGGCATCTCTTT
CTCTAAGTCCACAACTCCGTGGCACCTTTTTCT
Found at i:63534 original size:43 final size:43
Alignment explanation
Indices: 63512--64648 Score: 890
Period size: 43 Copynumber: 24.6 Consensus size: 43
63502 ACTGTCGCTA
* *
63512 GCCTTGAATCAGCACATTGGCATCTTTAAGCCCAATATTGTTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * * * *
63555 GCCTTGAATCAACATATTGGCACCTTTTCCATTTTTAAGACCAATGTCGCTG
1 GCCTTGAATCAGCACATTGGCA------CC---TTTAAGCCCAATATTGCTG
*
63607 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * * * *
63650 GCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGACTAATGTTGCTC
1 GCCTTGAATCAGCACATTGGCA-------C--CTTTAAGCCCAATATTGCTG
*
63702 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * * * *
63745 GCCTTGAATTAGCATATTGGCACATTTTCCATCTTTAAGACCAATGTCGCTG
1 GCCTTGAATCAGCACATTGG--CA-----C--CTTTAAGCCCAATATTGCTG
* * *
63797 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTACTA
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
*
63840 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * *
63883 GCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGACCAATGTTGCTG
1 GCCTTGAATCAGCACATTGGCA-------C--CTTTAAGCCCAATATTGCTG
*
63935 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * * * *
63978 GCCTTGAATTAGCATATTGGCACATTTTTCATCTTTAAGACCAATGTCGCTG
1 GCCTTGAATCAGCACATTGG--CA-----C--CTTTAAGCCCAATATTGCTG
* *
64030 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTACTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* *
64073 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGTTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * *
64116 GCCTTGAATCAGCACATTGGTACCTTTTCCATCTTTAAGACCAATGTTGCTG
1 GCCTTGAATCAGCACATTGG---------CACCTTTAAGCCCAATATTGCTG
* * * *
64168 GCCTTGAATCACCACATTGACACCTTTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * * * * *
64211 GCCTTGTATCAGCATATTGGCGCCTTGTCTTTAAGACCAATGTCGCTG
1 GCCTTGAATCAGCACATTGGC-AC----CTTTAAGCCCAATATTGCTG
* * *
64259 GCCTTGAATCAACACATTGGCACCTCTAAGCCCACTATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
*
64302 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * *
64345 GCCTTGAATCAACATATTGGCACCTCTAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * *
64388 GCCTTGAATCAGCACATTGGCACCTTTTCCATTTTTAAGACCAATGTTACTG
1 GCCTTGAATCAGCACATTGGCA------CC---TTTAAGCCCAATATTGCTG
* *
64440 GCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * * * *
64483 GCCTTGTATCAGCATATTGGTGC-CTTGTCTTTAAGACCAATGTCGCTG
1 GCCTTGAATCAGCACATT-G-GCAC----CTTTAAGCCCAATATTGCTG
*
64531 GCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
* * * * *
64574 GCCTTGAATCAGTATATTAGCACCTTCATCTTTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCA----C--CTTTAAGCCCAATATTGCTG
*
64623 GCCTTGAATCAGCATATTGGCACCTT
1 GCCTTGAATCAGCACATTGGCACCTT
64649 CATCTTTAAA
Statistics
Matches: 890, Mismatches: 123, Indels: 162
0.76 0.10 0.14
Matches are distributed among these distances:
43 498 0.56
44 3 0.00
45 11 0.01
46 6 0.01
47 4 0.00
48 70 0.08
49 40 0.04
50 8 0.01
52 250 0.28
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.31
Consensus pattern (43 bp):
GCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATTGCTG
Found at i:63656 original size:95 final size:91
Alignment explanation
Indices: 63491--64647 Score: 1193
Period size: 95 Copynumber: 12.5 Consensus size: 91
63481 GTTGGTGGCA
* * * * * * *
63491 TCTTTAAGTCCACTGTCGCTAGCCTTGAATCAGCACATTGGCATCTTTAAGCCCAATATTGTTGG
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGG
* *
63556 CCTTGAATCAACATATTGGCACCTTT
66 CCTTGAATCAGCACATTGGCACCTTT
*
63582 TCCATTTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTG
1 T-C---TTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTG
*
63647 CTGGCCTTGAATCAGCATATTGGCACCTTTT
62 CTGGCCTTGAATCAGCACATTGGCACC-TTT
* *
63678 CCATCTTTAAGACTAATGTTGCTCGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGC
1 ---TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGC
* * *
63743 TGGCCTTGAATTAGCATATTGGCACATTTT
63 TGGCCTTGAATCAGCACATTGGCAC-CTTT
* *
63773 CCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTAC
1 ---TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGC
*
63838 TAGCCTTGAATCAGCACATTGGCACC---
63 TGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
63864 TC--TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGACCAA
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA------CC-TC--TAAGCCCAA
*
63927 TGTTGCTGGCCTTGAATCAGCACATTGGCACC---
57 TATTGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * * *
63959 TC--TAAGCCCAATATTGCTGGCCTTGAATTAGCATATTGGCACATTTTTCATCTTTAAGACCAA
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCAC------C-TC--TAAGCCCAA
* *
64022 TGTCGCTGGCCTTGAATCAGCACATTGGCACC---
57 TATTGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
64054 TC--TAAGCCCAATATTACTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGTTGG
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGG
*
64117 CCTTGAATCAGCACATTGGTACCTTTT
66 CCTTGAATCAGCACATTGGCACC-TTT
* * * * *
64144 CCATCTTTAAGACCAATGTTGCTGGCCTTGAATCACCACATTGACACCTTTAAGTCCAATATCGC
1 ---TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGC
* * * *
64209 TGGCCTTGTATCAGCATATTGGCGCCTTG
63 TGGCCTTGAATCAGCACATTGGCACCTTT
* * *
64238 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTCTAAGCCCACTATTGCTGG
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGG
64303 CCTTGAATCAGCACATTGGCACC---
66 CCTTGAATCAGCACATTGGCACCTTT
* * * *
64326 TC--TAAGCCCAATATTGCTGGCCTTGAATCAACATATTGGCACCTCTAAGCCCAATATTGCTGG
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGG
64389 CCTTGAATCAGCACATTGGCACCTTT
66 CCTTGAATCAGCACATTGGCACCTTT
* * * *
64415 TCCATTTTTAAGACCAATGTTACTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCG
1 T-C---TTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTG
* * ** *
64480 CTGGCCTTGTATCAGCATATTGGTGCCTTG
62 CTGGCCTTGAATCAGCACATTGGCACCTTT
*
64510 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGG
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGG
* * * *
64575 CCTTGAATCAGTATATTAGCACCTTCA
66 CCTTGAATCAGCACATTGGCACCTT-T
* * * *
64602 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT
1 TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCT
64648 TCATCTTTAA
Statistics
Matches: 929, Mismatches: 94, Indels: 85
0.84 0.08 0.08
Matches are distributed among these distances:
86 150 0.16
88 6 0.01
89 3 0.00
90 1 0.00
91 157 0.17
92 46 0.05
93 4 0.00
94 3 0.00
95 554 0.60
96 3 0.00
98 1 0.00
99 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (91 bp):
TCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGG
CCTTGAATCAGCACATTGGCACCTTT
Found at i:63864 original size:138 final size:132
Alignment explanation
Indices: 63696--64647 Score: 886
Period size: 138 Copynumber: 6.9 Consensus size: 132
63686 AAGACTAATG
* * *
63696 TTGCTCGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATTAGCATA
1 TTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATCAGCACA
* * *
63761 TTGGCACATTTTCCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTAA
66 TTGG-ACA----CC-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTAA
63826 GCCCAATA
125 GCCCAATA
* * *
63834 TTACTAGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATCAGCATA
1 TTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATCAGCACA
* * * * *
63899 TTGGCACCTTTTCCATCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTCTAA
66 TTGG-A-C---ACC-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTAA
63964 GCCCAATA
125 GCCCAATA
* * * * *
63972 TTGCTGGCCTTGAATTAGCATATTGGCACATTTTTCATCTTTAAGACCAATGTCGCTGGCCTTGA
1 TTGCTGGCCTTGAATCAGCACATTGGCAC------C-TC--TAAGCCCAATATTGCTGGCCTTGA
* ** *
64037 ATCAGCACATTGG-CACCTC--TAAGCCCAATATTACTGGCCTTGAATCAGCACATTGGCACCTC
57 ATCAGCACATTGGACACCTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTC
64099 TAAGCCCAATA
122 TAAGCCCAATA
* * * *
64110 TTGTTGGCCTTGAATCAGCACATTGGTACCTTTTCCATCTTTAAGACCAATGTTGCTGGCCTTGA
1 TTGCTGGCCTTGAATCAGCACATTGG---C---ACC-TC--TAAGCCCAATATTGCTGGCCTTGA
* * *
64175 ATCACCACATT-GACA-C-CTTTAAGTCCAATATCGCTGGCCTTGTATCAGCATATTGGCGCCTT
57 ATCAGCACATTGGACACCTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--
* *
64237 GTCTTTAAGACCAATG
120 -TC--TAAGCCCAATA
* * *
64253 TCGCTGGCCTTGAATCAACACATTGGCACCTCTAAGCCCACTATTGCTGGCCTTGAATCAGCACA
1 TTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATCAGCACA
* * *
64318 TTGG-CACCTC--TAAGCCCAATATTGCTGGCCTTGAATCAACATATTGGCACCTCTAAGCCCAA
66 TTGGACACCTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTAAGCCCAA
64380 TA
131 TA
* * *
64382 TTGCTGGCCTTGAATCAGCACATTGGCACCTTTTCCATTTTTAAGACCAATGTTACTGGCCTTGA
1 TTGCTGGCCTTGAATCAGCACATTGGCACC---T-C-----TAAGCCCAATATTGCTGGCCTTGA
* **
64447 ATCAGCACATTGG-CA-C-CTTTAAGTCCAATATCGCTGGCCTTGTATCAGCATATTGGTGCCTT
57 ATCAGCACATTGGACACCTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--
* *
64509 GTCTTTAAGACCAATG
120 -TC--TAAGCCCAATA
* * *
64525 TCGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATCAGTATA
1 TTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATCAGCACA
*
64590 TTAG-CACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT
66 TTGGACA-C--C-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT
64648 TCATCTTTAA
Statistics
Matches: 692, Mismatches: 70, Indels: 105
0.80 0.08 0.12
Matches are distributed among these distances:
129 37 0.05
131 2 0.00
132 1 0.00
133 1 0.00
134 102 0.15
135 2 0.00
136 5 0.01
137 6 0.01
138 374 0.54
139 2 0.00
140 45 0.07
141 7 0.01
143 70 0.10
144 3 0.00
145 2 0.00
147 33 0.05
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (132 bp):
TTGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGCCCAATATTGCTGGCCTTGAATCAGCACA
TTGGACACCTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCTAAGCCCAA
TA
Found at i:64623 original size:49 final size:49
Alignment explanation
Indices: 64557--64685 Score: 186
Period size: 49 Copynumber: 2.6 Consensus size: 49
64547 TTGGCACCTC
64557 TAAGCCCAATATTGCTGGCCTTGAATCAGTATATTAGCACCTTCATCTT
1 TAAGCCCAATATTGCTGGCCTTGAATCAGTATATTAGCACCTTCATCTT
* * * *
64606 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGCCCAATATTGCTGGCCTTGAATCAGTATATTAGCACCTTCATCTT
* * * *
64655 TAAACCCCATGTTGTTGGCCTTGAATCAGTA
1 TAAGCCCAATATTGCTGGCCTTGAATCAGTA
64686 CATTGGCATT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (49 bp):
TAAGCCCAATATTGCTGGCCTTGAATCAGTATATTAGCACCTTCATCTT
Found at i:68018 original size:13 final size:13
Alignment explanation
Indices: 68000--68024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67990 AAGATTAATG
68000 TATCGATACATTA
1 TATCGATACATTA
68013 TATCGATACATT
1 TATCGATACATT
68025 TGAGTAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:68113 original size:32 final size:32
Alignment explanation
Indices: 68067--68152 Score: 136
Period size: 32 Copynumber: 2.7 Consensus size: 32
68057 AGCTTCGTAG
*
68067 CGATACATTATATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* *
68099 CGATACATTGTATCGATACAACACTTGTGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
68131 CCATACATTGTATCGATACAAA
1 CGATACATTGTATCGATACAAA
68153 TCGTTGAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:68999 original size:52 final size:49
Alignment explanation
Indices: 68943--69114 Score: 123
Period size: 49 Copynumber: 3.5 Consensus size: 49
68933 TGTGCTGAGA
* * ** *
68943 CAAGGCCAGGGACATTGGGCTTAGGGATGTTAAAGATGCCAATATGTTAATT
1 CAAGGCCAGCGACATTGGACTTAAAGATG--AAA-ATGCCAATATGCTAATT
** * * *
68995 CAAGGCCAATGATATTGGACTTAAAGATGAAAATGCCAATGTGCTGATT
1 CAAGGCCAGCGACATTGGACTTAAAGATGAAAATGCCAATATGCTAATT
* ** **
69044 CAAGGCCAGCGACATT-GATCTTAAAGA-CAAGGTGCCAATATGCCGATT
1 CAAGGCCAGCGACATTGGA-CTTAAAGATGAAAATGCCAATATGCTAATT
* * * *
69092 CAAAGCCAACGATATTGGGCTTA
1 CAAGGCCAGCGACATTGGACTTA
69115 TGCCAATGTG
Statistics
Matches: 97, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
48 35 0.36
49 36 0.37
50 3 0.03
52 23 0.24
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (49 bp):
CAAGGCCAGCGACATTGGACTTAAAGATGAAAATGCCAATATGCTAATT
Found at i:69045 original size:49 final size:48
Alignment explanation
Indices: 68878--69196 Score: 156
Period size: 48 Copynumber: 6.8 Consensus size: 48
68868 ATATGCAAAG
* * * * * *
68878 AATGACAATGTGCTGATTCATGGCCAACGGCATTAGATTTAAAGA-AG
1 AATGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGAGAA
* ** ** * **
68925 AATGCCAGTGTGCTGAGACAAGGCCAGGGACATTGGGCTTAGGGATGTTAA
1 AATGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGA-G--AA
* * * * *
68976 AGATGCCAATATGTTAATTCAAGGCCAATGATATTGGACTTAAAGATGAA
1 A-ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGA-GAA
* *
69026 AATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GATCTTAAAGACAA
1 AATGCCAATGTGCTGATTCAAGGCCAACGACATTGGA-CTTAAAGAGAA
** * * * * *
69074 GGTGCCAATATGCCGATTCAAAGCCAACGATATTGGGCTT--------
1 AATGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGAGAA
* * * * * *
69114 -ATGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAA
1 AATGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGAGAA
** * * *
69161 GGTGCCAATATGCTAATTCAAGGCCAACGATATTGG
1 AATGCCAATGTGCTGATTCAAGGCCAACGACATTGG
69197 GCTTGTGCCA
Statistics
Matches: 199, Mismatches: 57, Indels: 31
0.69 0.20 0.11
Matches are distributed among these distances:
39 30 0.15
47 32 0.16
48 62 0.31
49 36 0.18
50 3 0.02
51 2 0.01
52 34 0.17
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (48 bp):
AATGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGAGAA
Found at i:69260 original size:87 final size:87
Alignment explanation
Indices: 69027--69284 Score: 354
Period size: 87 Copynumber: 3.0 Consensus size: 87
69017 AAAGATGAAA
* *
69027 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGATCTTAAAGACAAGGTGCCAATATGCCGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
69092 CAAAGCCAACGATATTGGGCTT
66 CAAGGCCAACGATATTGGGCTT
* * * *
69114 ATGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAAGGTGCCAATATGCTAATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
69179 CAAGGCCAACGATATTGGGCTT
66 CAAGGCCAACGATATTGGGCTT
* * * * *** *
69201 GTGCCAATGTGCTGATTTAAGGCTAGCGACATTGGTCTTAAAGACAAAGTATTAGTATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* * *
69266 CAAGGTCAGCAATATTGGG
66 CAAGGCCAACGATATTGGG
69285 TTTTAAAGAT
Statistics
Matches: 149, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
87 149 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAACGATATTGGGCTT
Found at i:69449 original size:29 final size:30
Alignment explanation
Indices: 69360--69454 Score: 110
Period size: 29 Copynumber: 3.3 Consensus size: 30
69350 CACCAACTTG
69360 TGTGGGCTTTTGAAAGGGTTG-CATCA-ACT
1 TGTGGGCTTTTGAAAGGGTTGCCA-CAGACT
* * *
69389 TGTGTGCTTTTG-AA-GGTTGCCACTGACA
1 TGTGGGCTTTTGAAAGGGTTGCCACAGACT
*
69417 TGTGGGC-TTTGAAAGGGGTGCCACAGACT
1 TGTGGGCTTTTGAAAGGGTTGCCACAGACT
69446 TGTGGGCTT
1 TGTGGGCTT
69455 ACAGGAAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
27 10 0.19
28 14 0.26
29 29 0.54
30 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.33
Consensus pattern (30 bp):
TGTGGGCTTTTGAAAGGGTTGCCACAGACT
Found at i:69532 original size:27 final size:27
Alignment explanation
Indices: 69495--69553 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
69485 GCTTAAAAAG
69495 AAAAG-GTGCCACGGAGTTATGGACTT
1 AAAAGAGTGCCACGGAGTTATGGACTT
*
69521 AAAAGAGTGCCACGGAGTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTATGGACTT
69548 AAAAGA
1 AAAAGA
69554 AAAAAGAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.36, C:0.14, G:0.31, T:0.20
Consensus pattern (27 bp):
AAAAGAGTGCCACGGAGTTATGGACTT
Found at i:69543 original size:93 final size:95
Alignment explanation
Indices: 69434--69620 Score: 218
Period size: 93 Copynumber: 2.0 Consensus size: 95
69424 TTTGAAAGGG
* * * * * * *
69434 GTGCCACAGACTTGTGGGCTT-ACAGGAAAAAGGGATGCCACGGAGGTGTGGGCTTAAAAAG-AA
1 GTGCCACAGACTTGTGGACTTAAAAGAAAAAAGAG-TGCCACAGAAGTGTGGACTTAAAAAGAAA
69497 AAG-GTGCCACGGAGTTATGGACTTAAAAGA
65 AAGAGTGCCACGGAGTTATGGACTTAAAAGA
* * * *
69527 GTGCCACGGAGTTGTGGACTTAAAAGAAAAAAGAGTGCCACAGAATTGTGGACTTAAAAGGAAAA
1 GTGCCACAGACTTGTGGACTTAAAAGAAAAAAGAGTGCCACAGAAGTGTGGACTTAAAAAGAAAA
* * *
69592 AGAGTGCCATGGAGTTGTGGGCTTAAAAG
66 AGAGTGCCACGGAGTTATGGACTTAAAAG
69621 GAAAAAGAGT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
93 39 0.51
94 15 0.19
95 23 0.30
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.19
Consensus pattern (95 bp):
GTGCCACAGACTTGTGGACTTAAAAGAAAAAAGAGTGCCACAGAAGTGTGGACTTAAAAAGAAAA
AGAGTGCCACGGAGTTATGGACTTAAAAGA
Found at i:69718 original size:34 final size:33
Alignment explanation
Indices: 69434--69717 Score: 237
Period size: 34 Copynumber: 8.6 Consensus size: 33
69424 TTTGAAAGGG
* * * * *
69434 GTGCCACAGACTTGTGGGCTTACAGGAAAAAGG
1 GTGCCACAGAGTTGTGGACTTAAAAGAAAAAGA
* * *
69467 GATGCCACGGAGGTGTGGGCTTAAAA-AGAAAAG-
1 G-TGCCACAGAGTTGTGGACTTAAAAGA-AAAAGA
* *
69500 GTGCCACGGAGTTATGGACTT------AAAAGA
1 GTGCCACAGAGTTGTGGACTTAAAAGAAAAAGA
*
69527 GTGCCACGGAGTTGTGGACTTAAAAGAAAAAAGA
1 GTGCCACAGAGTTGTGGACTTAAAAG-AAAAAGA
*
69561 GTGCCACAGAATTGTGGACTTAAAAGGAAAAAGA
1 GTGCCACAGAGTTGTGGACTTAAAA-GAAAAAGA
** *
69595 GTGCCATGGAGTTGTGGGCTTAAAAGGAAAAAGA
1 GTGCCACAGAGTTGTGGACTTAAAA-GAAAAAGA
*
69629 GTGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAG-
1 GTGCCACAGAGTTGTGGAC-TT-AAAAGAAAAAGA
* *
69663 GTGCCACGGAGTTGTGGACTTTCAAAAGAAAAA-T
1 GTGCCACAGAGTTGTGGAC-TT-AAAAGAAAAAGA
* *
69697 GTGCCACTGACTTGTGGACTT
1 GTGCCACAGAGTTGTGGACTT
69718 TTGAAGGTTG
Statistics
Matches: 215, Mismatches: 22, Indels: 28
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.02
27 20 0.09
32 17 0.08
33 5 0.02
34 154 0.72
35 10 0.05
36 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (33 bp):
GTGCCACAGAGTTGTGGACTTAAAAGAAAAAGA
Found at i:69730 original size:28 final size:28
Alignment explanation
Indices: 69698--69752 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
69688 AAGAAAAATG
*
69698 TGCCACTGACTTGTGGACTTTTGAAGGT
1 TGCCAATGACTTGTGGACTTTTGAAGGT
*
69726 TGCCAATGACTTGTGGGCTTTTGAAGG
1 TGCCAATGACTTGTGGACTTTTGAAGG
69753 GTGAGGAACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.18, C:0.16, G:0.31, T:0.35
Consensus pattern (28 bp):
TGCCAATGACTTGTGGACTTTTGAAGGT
Found at i:71192 original size:1 final size:1
Alignment explanation
Indices: 71182--71323 Score: 113
Period size: 1 Copynumber: 142.0 Consensus size: 1
71172 ATCCGAACCC
* * * ** * * * *
71182 TTTTTGTTTTTTTTTTTGTTTTGTTTGCTTTTTTCTTTTTCTTTTTTTTTTGTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * *
71247 TTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTTTATTTTTTTTGTTTATTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
71312 TTTGTTTTTTTT
1 TTTTTTTTTTTT
71324 GTGGAGGACG
Statistics
Matches: 104, Mismatches: 37, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 104 1.00
ACGTcount: A:0.01, C:0.02, G:0.10, T:0.87
Consensus pattern (1 bp):
T
Found at i:71229 original size:14 final size:13
Alignment explanation
Indices: 71182--71323 Score: 137
Period size: 14 Copynumber: 10.6 Consensus size: 13
71172 ATCCGAACCC
71182 TTTTTGTTTTTTT-
1 TTTTT-TTTTTTTG
*
71195 TTTTGTTTTGTTTG
1 TTTT-TTTTTTTTG
* *
71209 CTTTTTTCTTTT-
1 TTTTTTTTTTTTG
*
71221 TCTTTTTTTTTTG
1 TTTTTTTTTTTTG
71234 TTTTTTTTGTTTT-
1 TTTTTTTT-TTTTG
71247 TTTTTTGTTTTTTG
1 TTTTTT-TTTTTTG
71261 TTTTTTGTTTTTTG
1 TTTTTT-TTTTTTG
*
71275 TTTTTTGTTTTTTA
1 TTTTTT-TTTTTTG
* *
71289 TTTTTTTTGTTTA
1 TTTTTTTTTTTTG
71302 TTTTTTTTTGTTTG
1 TTTTTTTTT-TTTG
71316 TTTTTTTT
1 TTTTTTTT
71324 GTGGAGGACG
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
12 9 0.08
13 47 0.43
14 54 0.49
ACGTcount: A:0.01, C:0.02, G:0.10, T:0.87
Consensus pattern (13 bp):
TTTTTTTTTTTTG
Found at i:71232 original size:34 final size:30
Alignment explanation
Indices: 71182--71323 Score: 144
Period size: 32 Copynumber: 4.5 Consensus size: 30
71172 ATCCGAACCC
*
71182 TTTTTGTTTTTTTTTTTGTTTTGTTTGCTTTT
1 TTTTTTTTTTTTTTTTTGTTTT-TTTG-TTTT
71214 TTCTTTTTCTTTTTTTTTTGTTTTTTTTGTTTT
1 TT-TTTTT-TTTTTTTTTTG-TTTTTTTGTTTT
71247 TTTTTTGTTTTTTGTTTTT-TGTTTTTTGTTTT
1 TTTTTT-TTTTTT-TTTTTGT-TTTTTTGTTTT
* *
71279 TTGTTTTTTATTTTTTTTGTTTATTT-TTTT
1 TT-TTTTTTTTTTTTTTTGTTTTTTTGTTTT
* *
71309 TTGTTTGTTTTTTTT
1 TTTTTTTTTTTTTTT
71324 GTGGAGGACG
Statistics
Matches: 96, Mismatches: 6, Indels: 19
0.79 0.05 0.16
Matches are distributed among these distances:
29 10 0.10
30 6 0.06
31 11 0.11
32 30 0.31
33 20 0.21
34 15 0.16
35 4 0.04
ACGTcount: A:0.01, C:0.02, G:0.10, T:0.87
Consensus pattern (30 bp):
TTTTTTTTTTTTTTTTTGTTTTTTTGTTTT
Found at i:76700 original size:52 final size:52
Alignment explanation
Indices: 76611--76739 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
76601 CGAAATATGA
* *
76611 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCGGC
* * *
76663 AAATTTGCCTGCATGTATCGATATATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCGGC
76715 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
76740 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCGGC
Found at i:76752 original size:52 final size:51
Alignment explanation
Indices: 76611--76759 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 51
76601 CGAAATATGA
*
76611 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTCGGC
* * * *
76663 AAATTTGCCTGCATGTATCGATATATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTCGGC
*
76715 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
76760 ATGTATCGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTCGGC
Found at i:76766 original size:13 final size:13
Alignment explanation
Indices: 76748--76772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76738 CAAAGATCAG
76748 TGTATCGATACAA
1 TGTATCGATACAA
76761 TGTATCGATACA
1 TGTATCGATACA
76773 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:76854 original size:13 final size:13
Alignment explanation
Indices: 76836--76860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76826 CAAAAAAATA
76836 TGTATCGATACAT
1 TGTATCGATACAT
76849 TGTATCGATACA
1 TGTATCGATACA
76861 ACACTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:77777 original size:67 final size:66
Alignment explanation
Indices: 77655--77783 Score: 163
Period size: 67 Copynumber: 1.9 Consensus size: 66
77645 ATTGGGATTT
* *
77655 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAG-AATATTGGACTTAAAGAT-AAGATG
77720 AGA
64 AGA
* * *
77723 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCC-GATGATATTGGGCTTAAAGATAAGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAGA--ATATTGGACTTAAAGATAAGA
77784 AAAAGGATGT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
65 1 0.02
66 5 0.09
67 44 0.81
68 4 0.07
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.24
Consensus pattern (66 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAGAATATTGGACTTAAAGATAAGATGAG
A
Found at i:77973 original size:92 final size:92
Alignment explanation
Indices: 77785--78806 Score: 1713
Period size: 92 Copynumber: 11.1 Consensus size: 92
77775 AAGATAAGAA
* *
77785 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
* *
77850 ATGCTGATTCAAGGCCAGCTATATTGCACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
77881 AAAGGTGCCAATGTGCTGATTCCAGGCCAGCTATATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
77946 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
77973 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
78038 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
78065 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
78130 TGATTCAAGGCCAACGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
78157 AAAGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
78222 TGATTCAAGGCTAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
78249 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAAGAAGGTGCCAATATGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
78314 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
78341 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
78406 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
78433 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAGGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
78498 TGATTCAAGGCTAGCAATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
78525 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
78590 TGATTCAAGGCCAGTGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
78617 AAAGGTGCCAATGTGCTGATTCAAGGCCAGTTACATTGGACTTAAGGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
78682 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
78709 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAGAAAGAAGGTGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-ATGAAGGTGCCAATATG
* * *
78773 CTGATTCAAGGCTAGCTATATTGGGCTT
65 CTGATTCAAGGCCAGCGATATTGGACTT
78801 AGAAGG
1 A-AAGG
78807 GTTGCCACCG
Statistics
Matches: 878, Mismatches: 46, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
91 2 0.00
92 826 0.94
93 4 0.00
94 1 0.00
95 40 0.05
96 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:78274 original size:21 final size:20
Alignment explanation
Indices: 78207--78274 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
78197 CTTAAGGAAG
78207 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
* *
78228 AAGGCTAGCGATATTG--GACTTA
1 AAGG-T-GCCA-ATTGCTGA-TTC
78250 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
78271 AAGG
1 AAGG
78275 CCAGCTACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (20 bp):
AAGGTGCCAATTGCTGATTC
Found at i:78550 original size:21 final size:21
Alignment explanation
Indices: 78483--78550 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
78473 CTTAAGGAAG
78483 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
78504 AAGGCTAG-CAATAT--TGGACTTA
1 AAGG-T-GCCAATATGCT-GA-TTC
*
78526 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATATGCTGATTC
78547 AAGG
1 AAGG
78551 CCAGCTACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
20 2 0.05
21 18 0.49
22 15 0.41
23 2 0.05
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:78642 original size:21 final size:21
Alignment explanation
Indices: 78575--78642 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
78565 CTTAAAGATG
*
78575 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* ** *
78596 AA-G-GCCAGTGATATTGGACTTA
1 AAGGTGCCAATG-TGCT-GA-TTC
78618 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
78639 AAGG
1 AAGG
78643 CCAGTTACAT
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 5 0.15
20 3 0.09
21 10 0.30
22 6 0.18
23 3 0.09
24 6 0.18
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:78845 original size:33 final size:33
Alignment explanation
Indices: 78801--78899 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
78791 TATTGGGCTT
78801 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* * *
78834 AGAATGGTTGCCACCAACTTTTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
78867 AG-AGGGTTGCCACCGACTTGTGTGGGTTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
78899 A
1 A
78900 AGGGAAAAAG
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
32 27 0.46
33 32 0.54
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.30
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:78945 original size:34 final size:33
Alignment explanation
Indices: 78902--79370 Score: 288
Period size: 34 Copynumber: 15.0 Consensus size: 33
78892 GTTTTAGAAG
*
78902 GGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAA
1 GGAAAAAG-GTGCCACGGAGTTGTGGGCTTAAAA
*
78936 GGAAAAAGAGTGCCATGGAGTTGTGGGCTTCAAAA
1 GGAAAAAG-GTGCCACGGAGTTGTGGGCTT-AAAA
*
78971 -G-----GGTGCCACAGAGTTGTGGGCTTTAAAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGC-TTAAAA
78999 -G-----GGTGCCACGGAGTTGTGGGCTTTAAAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGC-TTAAAA
* * * *
79027 AGACAAAGGTGCCACGGAGTTGTGGACTTAGAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA
79060 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 GGAAAAAG-GTGCCACGGAGTTGTGGGC-TTAAAA
* *
79095 TGAAAAAAGAGTGCCCCGGAGTTGTGGGCTTTGAAAA
1 -GGAAAAAG-GTGCCACGGAGTTGTGGGC-TT-AAAA
**
79132 -GAAGGAGGTGCCACGGAGTTGTGGGCTTAAAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA
79164 -G-----GGTGCCACGGAGTTGTGGGCTTAAAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA
* * *
79191 -G-----GGTGCCACAGAGTTGTGGACTTAGAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA
*
79218 GAAAAAAGAGTG-C-C-----TGTGGGCTTCAAAA
1 GGAAAAAG-GTGCCACGGAGTTGTGGGCTT-AAAA
79246 -G-----GGTGCCACGGAGTTGTGGGCTTTAAAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGC-TTAAAA
*
79274 -G-----GGTGCCACAGAGTTGTGGGCTTTAAAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGC-TTAAAA
* * * *
79302 AGATAAAGGTGCCACGGAGTTGTGGACTTAGAA
1 GGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA
*
79335 GGAAAAAGAGTGCCACGGAGTTGTAGGCTTTAAAA
1 GGAAAAAG-GTGCCACGGAGTTGTGGGC-TTAAAA
79370 G
1 G
79371 TTGTGGACTT
Statistics
Matches: 366, Mismatches: 33, Indels: 71
0.78 0.07 0.15
Matches are distributed among these distances:
21 3 0.01
22 2 0.01
23 1 0.00
27 58 0.16
28 89 0.24
29 7 0.02
32 6 0.02
33 26 0.07
34 122 0.33
35 19 0.05
36 29 0.08
37 4 0.01
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.21
Consensus pattern (33 bp):
GGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAA
Found at i:79157 original size:70 final size:68
Alignment explanation
Indices: 78995--79163 Score: 220
Period size: 70 Copynumber: 2.5 Consensus size: 68
78985 TGTGGGCTTT
*
78995 AAAAG-GGTGCCACGGAGTTGTGGGCTTTAAAAAGACAAAGGTGCCACGGAGTTGTGGACTTAGA
1 AAAAGAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAGA
79059 AGGA
66 A-GA
* * * *
79063 AAAAGA-GTGCCACGGAGTTGTGGGCTTTAAAATGAAAAAAGAGTGCCCCGGAGTTGTGGGCTTT
1 AAAAGAGGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAAAAG-GTGCCACGGAGTTGTGGACTTA
79127 GAA-A
64 GAAGA
*
79131 AGAAGGAGGTGCCACGGAGTTGTGGGC-TTAAAA
1 A-AAAGAGGTGCCACGGAGTTGTGGGCTTTAAAA
79164 GGGTGCCACG
Statistics
Matches: 90, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
68 34 0.38
69 15 0.17
70 41 0.46
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (68 bp):
AAAAGAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAGA
AGA
Found at i:79176 original size:27 final size:27
Alignment explanation
Indices: 79138--79301 Score: 172
Period size: 27 Copynumber: 6.0 Consensus size: 27
79128 AAAAGAAGGA
*
79138 GGTGCCACGGAGTTGTGGGCTTAAAAG
1 GGTGCCACAGAGTTGTGGGCTTAAAAG
*
79165 GGTGCCACGGAGTTGTGGGCTTAAAAG
1 GGTGCCACAGAGTTGTGGGCTTAAAAG
* *
79192 GGTGCCACAGAGTTGTGGACTTAGAA-
1 GGTGCCACAGAGTTGTGGGCTTAAAAG
*** *
79218 -G-AAAAAAGAGTGCCTGTGGGCTTCAAAAG
1 GGTGCCACAGAGT---TGTGGGCTT-AAAAG
*
79247 GGTGCCACGGAGTTGTGGGCTTTAAAAG
1 GGTGCCACAGAGTTGTGGGC-TTAAAAG
79275 GGTGCCACAGAGTTGTGGGCTTTAAAA
1 GGTGCCACAGAGTTGTGGGC-TTAAAA
79302 AGATAAAGGT
Statistics
Matches: 114, Mismatches: 15, Indels: 15
0.79 0.10 0.10
Matches are distributed among these distances:
24 6 0.05
25 1 0.01
27 58 0.51
28 41 0.36
29 2 0.02
30 1 0.01
31 5 0.04
ACGTcount: A:0.26, C:0.15, G:0.37, T:0.23
Consensus pattern (27 bp):
GGTGCCACAGAGTTGTGGGCTTAAAAG
Found at i:79196 original size:158 final size:154
Alignment explanation
Indices: 78895--79301 Score: 472
Period size: 158 Copynumber: 2.7 Consensus size: 154
78885 TGTGTGGGTT
* *
78895 TTAGAAGGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCATGGAGTTGT
1 TTAGAA-GGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGAAAAAAGAGTGCCACGGAGTTGT
*
78960 GGGCTTCAAAAGGGTGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAA
65 GGGCTTAAAAAGGGTGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAA
*
79025 AAAGACAAAGGTGCCACGGAGTTGTGGAC
130 AAAG----AGGTGCCACAGAGTTGTGGAC
* *
79054 TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAATGAAAAAAGAGTGCCCCGGAGTTG
1 TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGAC-TTAAAA-GAAAAAAGAGTGCCACGGAGTTG
*
79119 TGGGCTTTGAAAAGAAGGAGGTGCCACGGAGTTGTGGGC-TTAAAAGGGTGCCACGGAGTTGTGG
64 TGGGC-TT--AAA-AA-G-GGTGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGG
79183 GC-TT-AAAAG-GGTGCCACAGAGTTGTGGAC
123 GCTTTAAAAAGAGGTGCCACAGAGTTGTGGAC
* *
79212 TTAGAAGAAAAAAGAGTG-C-C-----TGTGGGCTTCAAAAG------G-GTGCCACGGAGTTGT
1 TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGACTT-AAAAGAAAAAAGAGTGCCACGGAGTTGT
*
79263 GGGCTTTAAAAGGGTGCCACAGAGTTGTGGGCTTTAAAA
65 GGGCTTAAAAAGGGTGCCACAGAGTTGTGGGCTTTAAAA
79302 AGATAAAGGT
Statistics
Matches: 227, Mismatches: 11, Indels: 41
0.81 0.04 0.15
Matches are distributed among these distances:
137 19 0.08
138 7 0.03
139 2 0.01
140 2 0.01
142 2 0.01
143 18 0.08
144 1 0.00
150 3 0.01
151 11 0.05
156 1 0.00
157 1 0.00
158 63 0.28
159 12 0.05
160 25 0.11
161 2 0.01
163 7 0.03
164 4 0.02
165 28 0.12
166 19 0.08
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.21
Consensus pattern (154 bp):
TTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGAAAAAAGAGTGCCACGGAGTTGTG
GGCTTAAAAAGGGTGCCACAGAGTTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAA
AAGAGGTGCCACAGAGTTGTGGAC
Found at i:79423 original size:50 final size:51
Alignment explanation
Indices: 79318--79423 Score: 114
Period size: 50 Copynumber: 2.1 Consensus size: 51
79308 AGGTGCCACG
*
79318 GAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTAGGCTTTAAA
1 GAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTCGTAGGCTTTAAA
* * *
79369 -AGTTGTGGACTTTGAA-G-AAAAGA-TGCCCCTGAGTCGT-GGACTTTGGAAA
1 GAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTCGTAGG-CTTT--AAA
79418 GAGTTG
1 GAGTTG
79424 CCACTGAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
46 2 0.04
47 15 0.32
48 6 0.13
49 4 0.09
50 20 0.43
ACGTcount: A:0.30, C:0.11, G:0.33, T:0.25
Consensus pattern (51 bp):
GAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTCGTAGGCTTTAAA
Found at i:79440 original size:30 final size:30
Alignment explanation
Indices: 79371--79515 Score: 123
Period size: 30 Copynumber: 4.7 Consensus size: 30
79361 GCTTTAAAAG
* *
79371 TTGTGGACTTTGAAGAAAAGATGCCCCTGAG
1 TTGTGGACTTTG-AGAAAAGATGCCACTGAA
* *
79402 TCGTGGACTTTG-GAAAGAGTTGCCACTGAA
1 TTGTGGACTTTGAGAAA-AGATGCCACTGAA
*
79432 TTGTGGACTTTGAGACAAGATGCCACT-AA
1 TTGTGGACTTTGAGAAAAGATGCCACTGAA
** * *
79461 GTCATGGACTTTAAGAAGGAAAGATGCCACTGAG
1 -TTGTGGACTTT--G-AGAAAAGATGCCACTGAA
* *
79495 TCGTGGGCTTTGAGAAAAGAT
1 TTGTGGACTTTGAGAAAAGAT
79516 TTGAAGAATT
Statistics
Matches: 92, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
29 6 0.07
30 47 0.51
31 15 0.16
32 1 0.01
33 22 0.24
34 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (30 bp):
TTGTGGACTTTGAGAAAAGATGCCACTGAA
Found at i:79488 original size:33 final size:33
Alignment explanation
Indices: 79448--79510 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
79438 ACTTTGAGAC
79448 AAGATGCCACTAAGTCATGGACTTTAAGAAGGA
1 AAGATGCCACTAAGTCATGGACTTTAAGAAGGA
* * * *
79481 AAGATGCCACTGAGTCGTGGGCTTTGAGAA
1 AAGATGCCACTAAGTCATGGACTTTAAGAA
79511 AAGATTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (33 bp):
AAGATGCCACTAAGTCATGGACTTTAAGAAGGA
Found at i:87824 original size:52 final size:52
Alignment explanation
Indices: 87735--87863 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
87725 CGAAATATGA
* *
87735 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCGGC
* * *
87787 AAATTTGCCTGCATGTATCGATATATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCGGC
87839 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
87864 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCGGC
Found at i:87876 original size:52 final size:51
Alignment explanation
Indices: 87735--87883 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 51
87725 CGAAATATGA
*
87735 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTCGGC
* * * *
87787 AAATTTGCCTGCATGTATCGATATATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTCGGC
*
87839 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
87884 ATGTATCGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTCGGC
Found at i:87890 original size:13 final size:13
Alignment explanation
Indices: 87872--87896 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87862 CAAAGATCAG
87872 TGTATCGATACAA
1 TGTATCGATACAA
87885 TGTATCGATACA
1 TGTATCGATACA
87897 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:87978 original size:13 final size:13
Alignment explanation
Indices: 87960--87984 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87950 CAAAAAAATA
87960 TGTATCGATACAT
1 TGTATCGATACAT
87973 TGTATCGATACA
1 TGTATCGATACA
87985 ACACTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88901 original size:67 final size:67
Alignment explanation
Indices: 88779--88907 Score: 170
Period size: 67 Copynumber: 1.9 Consensus size: 67
88769 ATTGGGTTTT
* * * *
88779 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATACTGATTCAAGGCCAACAATATTGGACTTAAAGAT-AAGATG
88844 AGA
65 AGA
* * * *
88847 AAAG-TGATAAAGATGCCAATATATTGATTCACGGCCAACGATATTGGGCTTAAAGATAAGA
1 AAAGATGATAAAGATGCCAATATACTGATTCAAGGCCAACAATATTGGACTTAAAGATAAGA
88908 AAAAGGATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
66 4 0.08
67 45 0.85
68 4 0.08
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.23
Consensus pattern (67 bp):
AAAGATGATAAAGATGCCAATATACTGATTCAAGGCCAACAATATTGGACTTAAAGATAAGATGA
GA
Found at i:89094 original size:92 final size:91
Alignment explanation
Indices: 88909--89746 Score: 1352
Period size: 92 Copynumber: 9.1 Consensus size: 91
88899 AAGATAAGAA
* ** *
88909 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTAAATTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT--A-A-GGAAAAGGTGCCAAT
*
88974 ATGCTGATTCAAGGCCAGCTATATTGGACTT
61 ATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
89005 AAAAGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGA-AAAGGTGCCAATATGC
89070 TGATTCAAGGCCAGCGATATTGGACTT
65 TGATTCAAGGCCAGCGATATTGGACTT
* * *
89097 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATAC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGA-AAAGGTGCCAATATGC
89162 TGATTCAAGGCCAGCGATATTGGACTT
65 TGATTCAAGGCCAGCGATATTGGACTT
* * * *
89189 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGA-AAAGGTGCCAATATGC
89254 TGATTCAAGGCCAGCGATATTGGACTT
65 TGATTCAAGGCCAGCGATATTGGACTT
89281 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAA-AAGGTGCCAATATGC
* *
89346 TAATTCAAGGCTAGCGATATTGGACTT
65 TGATTCAAGGCCAGCGATATTGGACTT
89373 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAA-AAGGTGCCAATATGC
89438 TGATTCAAGGCCAGCGATATTGGACTT
65 TGATTCAAGGCCAGCGATATTGGACTT
89465 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAAAAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGG-AAAAGGTGCCAATATGC
*
89530 TGATTCAAGGCCGGCGATATTGGACTT
65 TGATTCAAGGCCAGCGATATTGGACTT
89557 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAA-AAGGTGCCAATATGC
89622 TGATTCAAGGCCAGCGATATTGGACTT
65 TGATTCAAGGCCAGCGATATTGGACTT
*
89649 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTTAGGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAA-AAGGTGCCAATATGC
* * *
89714 TGATTCAAGGCTAGCTATATTGGGCTT
65 TGATTCAAGGCCAGCGATATTGGACTT
89741 AGAAGG
1 A-AAGG
89747 GTTGCCACCG
Statistics
Matches: 708, Mismatches: 29, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
91 4 0.01
92 659 0.93
93 7 0.01
95 34 0.05
96 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (91 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGAAAAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTT
Found at i:89785 original size:33 final size:33
Alignment explanation
Indices: 89741--89839 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
89731 TATTGGGCTT
89741 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
89774 AGAATGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
89807 AG-AGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
89839 A
1 A
89840 AGGGAAAAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 29 0.47
33 33 0.53
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:89820 original size:32 final size:31
Alignment explanation
Indices: 89734--89843 Score: 168
Period size: 32 Copynumber: 3.5 Consensus size: 31
89724 CTAGCTATAT
89734 TGGGC-TTAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGGGTTGCCACCGACTTGTG
* *
89764 TGGGCTTTAGAGAATGGTTGCCACCAACTTGTG
1 TGGGCTTT--AGAAGGGTTGCCACCGACTTGTG
89797 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGA-AGGGTTGCCACCGACTTGTG
89829 TGGGCTTTAGAAGGG
1 TGGGCTTTAGAAGGG
89844 AAAAAGAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
30 5 0.07
31 9 0.12
32 29 0.40
33 29 0.40
ACGTcount: A:0.18, C:0.17, G:0.36, T:0.28
Consensus pattern (31 bp):
TGGGCTTTAGAAGGGTTGCCACCGACTTGTG
Found at i:89910 original size:34 final size:31
Alignment explanation
Indices: 89872--90220 Score: 256
Period size: 34 Copynumber: 11.0 Consensus size: 31
89862 TTGTGGATGT
*
89872 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTA-AA--A
* *
89906 AAAAGAGTGCCACGGAGTTGTGGGCTT---C
1 AAAAGGGTGCCACGGAGTTGTGGGCTTAAAA
89934 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAATGAA
1 AAAAGGGTGCCACGGAGTTGTGGGC-TT--AA--AA
* *
89970 AAAAGAGTGCCCCGGAGTTGTGGGCTTTGAAAA
1 AAAAGGGTGCCACGGAGTTGTGGGC-TT-AAAA
* *
90003 GAAGGAGGTGCCACGGAGTTGTGGGCTT----
1 AAAAG-GGTGCCACGGAGTTGTGGGCTTAAAA
* *
90031 AAAAGGGTGCCACAGAGTTGTGGACTTAGAAGAA
1 AAAAGGGTGCCACGGAGTTGTGGGCTT--AA-AA
* * **
90065 AAAAGAGTGCCACAGAGTTGTGGG-TT--TC
1 AAAAGGGTGCCACGGAGTTGTGGGCTTAAAA
* *
90093 AAAAGGGTGCCACAGAGTTGTGGGCTT---T
1 AAAAGGGTGCCACGGAGTTGTGGGCTTAAAA
90121 AAAAGGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAAGGGTGCCACGGAGTTGTGGGC-TTAAAA
* *
90153 AGATAAAGGTGCCACGGAGTTGTGGACTTAGAAGGA
1 A-A-AAGGGTGCCACGGAGTTGTGGGCTTA-AA--A
* *
90189 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAGGGTGCCACGGAGTTGTGGGCTTAAAA
90220 A
1 A
90221 GTTGTGGACT
Statistics
Matches: 259, Mismatches: 30, Indels: 55
0.75 0.09 0.16
Matches are distributed among these distances:
27 20 0.08
28 74 0.29
29 6 0.02
31 2 0.01
32 1 0.00
33 15 0.06
34 110 0.42
35 3 0.01
36 28 0.11
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.21
Consensus pattern (31 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTAAAA
Found at i:89945 original size:62 final size:63
Alignment explanation
Indices: 89827--89996 Score: 229
Period size: 62 Copynumber: 2.7 Consensus size: 63
89817 CACCGACTTG
* * *
89827 TGTGGGCTTTAGAAGGGAAAAAGAGTGCCACAGAGTTGT-GGATGTAAAAGGGTGCCACGGAGT
1 TGTGGACTTTAGAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT-TAAAAGGGTGCCACGGAGT
89890 TGTGGAC-TTAGAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTCAAAAGGGTGCCACGGAGT
1 TGTGGACTTTAGAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT-AAAAGGGTGCCACGGAGT
* * * * *
89952 TGTGGGCTTTAAAATGAAAAAAGAGTGCCCCGGAGTTGTGGGCTT
1 TGTGGACTTTAGAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
89997 TGAAAAGAAG
Statistics
Matches: 96, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
61 24 0.25
62 33 0.34
63 11 0.11
64 28 0.29
ACGTcount: A:0.29, C:0.13, G:0.36, T:0.22
Consensus pattern (63 bp):
TGTGGACTTTAGAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGT
Found at i:90026 original size:159 final size:150
Alignment explanation
Indices: 89795--90187 Score: 464
Period size: 159 Copynumber: 2.5 Consensus size: 150
89785 CACCAACTTG
* * * ** * *
89795 TGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGGGAAAAAGAGTGCCACAG
1 TGTGGGCTTTA-AAAGGG-TGCCACGGA-GT-TGTGGGCTTTA-AAAAGATAAAG-GTGCCACGG
* * *
89860 AGTTGTGGATGTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTT
60 AGTTGTGGAT-TAAAAGGGTGCCACAGAGTTGTGGACTTAGAAGAAAAAAGAGTGCCACAGAGTT
*
89925 GTGGGCTTCAAAAGGGTGCCACGGAGT
124 GTGGGCTTCAAAAGGGTGCCACAGAGT
* * *
89952 TGTGGGCTTTAAAATGAAAAAAGAGTGCCCCGGAGTTGTGGGCTTTGAAAAGA-AGGAGGTGCCA
1 TGTGGGCTTTAAAA-G------G-GTGCCACGGAGTTGTGGGCTTTAAAAAGATA-AAGGTGCCA
*
90016 CGGAGTTGTGGGCTTAAAAGGGTGCCACAGAGTTGTGGACTTAGAAGAAAAAAGAGTGCCACAGA
57 CGGAGTTGT-GGATTAAAAGGGTGCCACAGAGTTGTGGACTTAGAAGAAAAAAGAGTGCCACAGA
*
90081 GTTGTGGGTTTCAAAAGGGTGCCACAGAGT
121 GTTGTGGGCTTCAAAAGGGTGCCACAGAGT
90111 TGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGATAAAGGTGCCACGGAGTTGT
1 TGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGATAAAGGTGCCACGGAGTTGT
*
90176 GGACTTAGAAGG
66 GGA-TTAAAAGG
90188 AAAAAGAGTG
Statistics
Matches: 204, Mismatches: 20, Indels: 30
0.80 0.08 0.12
Matches are distributed among these distances:
150 2 0.01
151 51 0.25
152 2 0.01
156 2 0.01
157 12 0.06
158 1 0.00
159 105 0.51
160 9 0.04
161 10 0.05
162 1 0.00
163 8 0.04
164 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.36, T:0.22
Consensus pattern (150 bp):
TGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAAGATAAAGGTGCCACGGAGTTGT
GGATTAAAAGGGTGCCACAGAGTTGTGGACTTAGAAGAAAAAAGAGTGCCACAGAGTTGTGGGCT
TCAAAAGGGTGCCACAGAGT
Found at i:90287 original size:29 final size:30
Alignment explanation
Indices: 90222--90365 Score: 130
Period size: 30 Copynumber: 4.7 Consensus size: 30
90212 GCTTTAAAAG
*
90222 TTGTGGACTTTGAAGAAAAGATGCCACTGAG
1 TTGTGGACTTTG-AGAAAAGATGCCACTGAA
* * *
90253 TCGTGGACTTTG-GAAGAGTTGCCACTGAA
1 TTGTGGACTTTGAGAAAAGATGCCACTGAA
*
90282 TTGTGGACTTTGAGACAAGATGCCACT-AA
1 TTGTGGACTTTGAGAAAAGATGCCACTGAA
** * *
90311 GTCATGGACTTTAAGAAGGAAAGATGCCACTGAG
1 -TTGTGGACTTT--G-AGAAAAGATGCCACTGAA
* *
90345 TCGTGGGCTTTGAGAAAAGAT
1 TTGTGGACTTTGAGAAAAGAT
90366 TTGAAGAATT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
29 27 0.30
30 28 0.31
31 12 0.13
32 1 0.01
33 22 0.24
34 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (30 bp):
TTGTGGACTTTGAGAAAAGATGCCACTGAA
Found at i:90338 original size:33 final size:33
Alignment explanation
Indices: 90298--90360 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
90288 ACTTTGAGAC
90298 AAGATGCCACTAAGTCATGGACTTTAAGAAGGA
1 AAGATGCCACTAAGTCATGGACTTTAAGAAGGA
* * * *
90331 AAGATGCCACTGAGTCGTGGGCTTTGAGAA
1 AAGATGCCACTAAGTCATGGACTTTAAGAA
90361 AAGATTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (33 bp):
AAGATGCCACTAAGTCATGGACTTTAAGAAGGA
Found at i:90365 original size:63 final size:59
Alignment explanation
Indices: 90224--90365 Score: 167
Period size: 63 Copynumber: 2.3 Consensus size: 59
90214 TTTAAAAGTT
* * * * *
90224 GTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGAAGAGTTGCCACTGAATT
1 GTGGACTTTG-AGAAAAGATGCCACTAAGTCATGGACTTTAGAAGAGATGCCACTGAATC
* *
90284 GTGGACTTTGAGACAAGATGCCACTAAGTCATGGACTTTAAGAAGGAAAGATGCCACTGAGTC
1 GTGGACTTTGAGAAAAGATGCCACTAAGTCATGGACTTT-AGAA-G--AGATGCCACTGAATC
*
90347 GTGGGCTTTGAGAAAAGAT
1 GTGGACTTTGAGAAAAGAT
90366 TTGAAGAATT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
59 26 0.38
60 13 0.19
61 1 0.01
63 29 0.42
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.25
Consensus pattern (59 bp):
GTGGACTTTGAGAAAAGATGCCACTAAGTCATGGACTTTAGAAGAGATGCCACTGAATC
Found at i:99728 original size:13 final size:13
Alignment explanation
Indices: 99710--99734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99700 CATAAAATGT
99710 TGTATCGATACAA
1 TGTATCGATACAA
99723 TGTATCGATACA
1 TGTATCGATACA
99735 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:99732 original size:33 final size:33
Alignment explanation
Indices: 99690--99756 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
99680 TTCAACGATT
99690 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
99723 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
99756 T
1 T
99757 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:99815 original size:13 final size:13
Alignment explanation
Indices: 99797--99821 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99787 ATTACTCAAA
99797 TGTATCGATACAT
1 TGTATCGATACAT
99810 TGTATCGATACA
1 TGTATCGATACA
99822 CTGATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:99872 original size:52 final size:53
Alignment explanation
Indices: 99810--99949 Score: 178
Period size: 52 Copynumber: 2.7 Consensus size: 53
99800 ATCGATACAT
*** *
99810 TGTATCGATACACTGAT-CTTTATATCGATACATGCAGGAAAATTTGCCCAGA
1 TGTATCGATACACTGATAAAATATATCGATACATGCAGGAAAATTTGCCCAAA
* * *
99862 TGTATCGATACA-TTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAAA
1 TGTATCGATACACTGATAAAATATATCGATACATGCAGGAAAATTTGCCCAAA
* *
99914 TGTATCGATACACT-ATTAAATGTATCGATACATGCA
1 TGTATCGATACACTGATAAAATATATCGATACATGCA
99950 AGCAACTTTT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 3 0.04
52 74 0.95
53 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (53 bp):
TGTATCGATACACTGATAAAATATATCGATACATGCAGGAAAATTTGCCCAAA
Found at i:106499 original size:13 final size:13
Alignment explanation
Indices: 106481--106505 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106471 CAAAGATCAG
106481 TGTATCGATACAA
1 TGTATCGATACAA
106494 TGTATCGATACA
1 TGTATCGATACA
106506 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:106582 original size:19 final size:19
Alignment explanation
Indices: 106558--106609 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
106548 AGCAATACAT
106558 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
106577 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
*
106596 TGTATCAATACAAA
1 TGTATCGATACAAA
106610 TTGTTGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:107538 original size:32 final size:32
Alignment explanation
Indices: 107492--107574 Score: 130
Period size: 32 Copynumber: 2.6 Consensus size: 32
107482 TCAACGATTC
*
107492 GTATCGATATAATGTATCGATACACAAGTATT
1 GTATCGATACAATGTATCGATACACAAGTATT
* *
107524 GTATCGATACAATGTATCGATACATAAGTTTT
1 GTATCGATACAATGTATCGATACACAAGTATT
*
107556 GTATTGATACAATGTATCG
1 GTATCGATACAATGTATCG
107575 CTACGAAGCT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (32 bp):
GTATCGATACAATGTATCGATACACAAGTATT
Found at i:107541 original size:13 final size:13
Alignment explanation
Indices: 107523--107547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107513 ACACAAGTAT
107523 TGTATCGATACAA
1 TGTATCGATACAA
107536 TGTATCGATACA
1 TGTATCGATACA
107548 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:107621 original size:21 final size:21
Alignment explanation
Indices: 107595--107653 Score: 118
Period size: 21 Copynumber: 2.8 Consensus size: 21
107585 ACTGCCAAGA
107595 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
107616 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
107637 AAATGTATCGATACATT
1 AAATGTATCGATACATT
107654 GTATCGATAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAATGTATCGATACATTACTC
Found at i:107658 original size:13 final size:13
Alignment explanation
Indices: 107640--107664 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107630 ATTACTCAAA
107640 TGTATCGATACAT
1 TGTATCGATACAT
107653 TGTATCGATACA
1 TGTATCGATACA
107665 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:111052 original size:14 final size:15
Alignment explanation
Indices: 111033--111061 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
111023 TAAAAAGGCT
111033 TAATA-TGTTAAATA
1 TAATATTGTTAAATA
111047 TAATATTGTTAAATA
1 TAATATTGTTAAATA
111062 AACAAGTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TAATATTGTTAAATA
Found at i:122539 original size:22 final size:23
Alignment explanation
Indices: 122514--122560 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
122504 ATTCAAATTA
122514 ATTAATA-AAAA-TAATATAATAT
1 ATTAATACAAAATTAATAT-ATAT
122536 ATTAATATCAAAATTAATATATAT
1 ATTAATA-CAAAATTAATATATAT
122560 A
1 A
122561 ACTGAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 7 0.32
24 9 0.41
25 6 0.27
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
ATTAATACAAAATTAATATATAT
Found at i:124605 original size:23 final size:22
Alignment explanation
Indices: 124571--124614 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
124561 ACTTTGAATT
124571 ATTTTTACTTGAAAAACATTTG
1 ATTTTTACTTGAAAAACATTTG
*
124593 ATTTATTACTTGAATAACATTT
1 ATTT-TTACTTGAAAAACATTT
124615 ATACTTAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (22 bp):
ATTTTTACTTGAAAAACATTTG
Found at i:130552 original size:17 final size:16
Alignment explanation
Indices: 130532--130588 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
130522 CATAATTTTT
130532 AATATTAAAAAATAAAA
1 AATA-TAAAAAATAAAA
***
130549 AATATAAAAATATTTTA
1 AATATAAAAA-ATAAAA
130566 AATAT-AAAAATAAAA
1 AATATAAAAAATAAAA
*
130581 AATTTAAA
1 AATATAAA
130589 TATTCGAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
15 7 0.23
16 12 0.39
17 12 0.39
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AATATAAAAAATAAAA
Found at i:130557 original size:8 final size:8
Alignment explanation
Indices: 130539--130588 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
130529 TTTAATATTA
130539 AAAAATA-
1 AAAAATAT
130546 AAAAATAT
1 AAAAATAT
130554 AAAAATATT
1 AAAAATA-T
**
130563 TTAAATAT
1 AAAAATAT
130571 AAAAATA-
1 AAAAATAT
*
130578 AAAAATTT
1 AAAAATAT
130586 AAA
1 AAA
130589 TATTCGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
7 13 0.37
8 16 0.46
9 6 0.17
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
AAAAATAT
Found at i:131011 original size:42 final size:42
Alignment explanation
Indices: 130944--131024 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
130934 TATATTTTTA
130944 TAAATATAAAATAATATAAATTATTAAATATA-TTAAAATTT
1 TAAATATAAAATAATATAAATTATTAAATATATTTAAAATTT
* * *
130985 TAAATATAAATATGATAT-ATTATATTAATTATATTTAAAA
1 TAAATATAAA-ATAATATAAAT-TATTAAATATATTTAAAA
131025 ATATTATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 12 0.35
42 16 0.47
43 6 0.18
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (42 bp):
TAAATATAAAATAATATAAATTATTAAATATATTTAAAATTT
Found at i:131044 original size:13 final size:13
Alignment explanation
Indices: 131026--131052 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
131016 TATTTAAAAA
131026 TATTATATTATTT
1 TATTATATTATTT
131039 TATTATATTATTT
1 TATTATATTATTT
131052 T
1 T
131053 TATATTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TATTATATTATTT
Found at i:131182 original size:14 final size:15
Alignment explanation
Indices: 131156--131184 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
131146 GTTATATGCC
131156 TTATTTATTTAAATT
1 TTATTTATTTAAATT
131171 TTATTT-TTTAAATT
1 TTATTTATTTAAATT
131185 ATATATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTTATTTAAATT
Found at i:132279 original size:401 final size:401
Alignment explanation
Indices: 131536--132316 Score: 1508
Period size: 401 Copynumber: 1.9 Consensus size: 401
131526 TTTGTAATTT
131536 ATCATTTTTGCTTGTTTCTTAGTCTTTTCTTAATATTCAGCAGCTTGTCACACTCGTGTGCGACT
1 ATCATTTTTGCTTGTTTCTTAGTCTTTTCTTAATATTCAGCAGCTTGTCACACTCGTGTGCGACT
*
131601 AGTCTAGGTCCCGACAACCAACACTAAGCACGCGTAACGGACTTTTATCGTGGGACCACTGCTTA
66 AGTCTAGGTCCCGACAACCAACACTAAGCACGCGTAACGGACTTTTATCATGGGACCACTGCTTA
*
131666 GGTACACCCAGGAGAATGATAAAGGACGCTTGACAAGGATGACATCTCTAGGCAGGACAACTCCA
131 GGTACACCCAGGAGAATGATAAAGGACGCTCGACAAGGATGACATCTCTAGGCAGGACAACTCCA
*
131731 GTACCTGTAGCACCATTTCACTATTTATCGTAGCAGACATCCAAGGGCAAGCAATTATGTTATCT
196 GTACCTGTAACACCATTTCACTATTTATCGTAGCAGACATCCAAGGGCAAGCAATTATGTTATCT
131796 GGACTAATCGGTAGATTAGAATCCCAGGCATAAAAGGACGAGTTTACTATTCATAATTTTGTTAC
261 GGACTAATCGGTAGATTAGAATCCCAGGCATAAAAGGACGAGTTTACTATTCATAATTTTGTTAC
131861 GTTTTTAAAGATATTTGAACGTTTCGAAAAGAGTTTGATTTGTTTCATTAGATAGATTATCTCAA
326 GTTTTTAAAGATATTTGAACGTTTCGAAAAGAGTTTGATTTGTTTCATTAGATAGATTATCTCAA
131926 ATTCGGTCTAA
391 ATTCGGTCTAA
131937 ATCATTTTTGCTTGTTTCTTAGTCTTTTCTTAATATTCAGCAGCTTGTCACACTCGTGTGCGACT
1 ATCATTTTTGCTTGTTTCTTAGTCTTTTCTTAATATTCAGCAGCTTGTCACACTCGTGTGCGACT
*
132002 AGTCTAGGTCCCGACAACCAACACTAGGCACGCGTAACGGACTTTTATCATGGGACCACTGCTTA
66 AGTCTAGGTCCCGACAACCAACACTAAGCACGCGTAACGGACTTTTATCATGGGACCACTGCTTA
132067 GGTACACCCAGGAGAATGATAAAGGACGCTCGACAAGGATGACATCTCTAGGCAGGACAACTCCA
131 GGTACACCCAGGAGAATGATAAAGGACGCTCGACAAGGATGACATCTCTAGGCAGGACAACTCCA
132132 GTACCTGTAACACCATTTCACTATTTATCGTAGCAGACATCCAAGGGCAAGCAATTATGTTATCT
196 GTACCTGTAACACCATTTCACTATTTATCGTAGCAGACATCCAAGGGCAAGCAATTATGTTATCT
* *
132197 GGACTAATCGGTAGATTAGAATTCCAGGCATAAAAGGGCGAGTTTACTATTCATAATTTTGTTAC
261 GGACTAATCGGTAGATTAGAATCCCAGGCATAAAAGGACGAGTTTACTATTCATAATTTTGTTAC
132262 GTTTTTAAAGATATTTGAACGTTTCGAAAAGAGTTTGATTTGTTTCATTAGATAG
326 GTTTTTAAAGATATTTGAACGTTTCGAAAAGAGTTTGATTTGTTTCATTAGATAG
132317 TTGTATAAAT
Statistics
Matches: 374, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
401 374 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (401 bp):
ATCATTTTTGCTTGTTTCTTAGTCTTTTCTTAATATTCAGCAGCTTGTCACACTCGTGTGCGACT
AGTCTAGGTCCCGACAACCAACACTAAGCACGCGTAACGGACTTTTATCATGGGACCACTGCTTA
GGTACACCCAGGAGAATGATAAAGGACGCTCGACAAGGATGACATCTCTAGGCAGGACAACTCCA
GTACCTGTAACACCATTTCACTATTTATCGTAGCAGACATCCAAGGGCAAGCAATTATGTTATCT
GGACTAATCGGTAGATTAGAATCCCAGGCATAAAAGGACGAGTTTACTATTCATAATTTTGTTAC
GTTTTTAAAGATATTTGAACGTTTCGAAAAGAGTTTGATTTGTTTCATTAGATAGATTATCTCAA
ATTCGGTCTAA
Found at i:135469 original size:52 final size:52
Alignment explanation
Indices: 135391--135519 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
135381 CGAAATATGA
135391 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
*
135443 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
135495 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
135520 AAGATCAGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
Found at i:135530 original size:52 final size:51
Alignment explanation
Indices: 135391--135537 Score: 233
Period size: 52 Copynumber: 2.8 Consensus size: 51
135381 CGAAATATGA
135391 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
*
135443 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
*
135495 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATA
135538 TAATGTATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
51 2 0.02
52 88 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGC
Found at i:135619 original size:19 final size:18
Alignment explanation
Indices: 135595--135692 Score: 81
Period size: 19 Copynumber: 5.8 Consensus size: 18
135585 TAGCTTAAAT
135595 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
135614 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
135627 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
135646 TGTATCGATAC--A-TTA
1 TGTATCGATACAAACTTA
135661 --TATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
*
135679 TGTATCAATACAAA
1 TGTATCGATACAAA
135693 TCGTTGAAAT
Statistics
Matches: 65, Mismatches: 1, Indels: 26
0.71 0.01 0.28
Matches are distributed among these distances:
13 20 0.31
14 1 0.02
15 3 0.05
16 4 0.06
18 4 0.06
19 23 0.35
20 10 0.15
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:135632 original size:13 final size:13
Alignment explanation
Indices: 135614--135670 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
135604 ACAAAACTTA
135614 TGTATCGATACAT
1 TGTATCGATACAT
135627 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
135645 ATGTATCGATACAT
1 -TGTATCGATACAT
*
135659 TATATCGATACA
1 TGTATCGATACA
135671 ACACTTTATG
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 20 0.54
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:135634 original size:32 final size:32
Alignment explanation
Indices: 135593--135690 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
135583 AGTAGCTTAA
*
135593 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
135625 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
* *
135657 ATTATATCGATACAACACTTTATGTATCAATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
135690 A
1 A
135691 AATCGTTGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 48 0.77
33 14 0.23
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:136786 original size:49 final size:49
Alignment explanation
Indices: 136527--137014 Score: 550
Period size: 49 Copynumber: 10.1 Consensus size: 49
136517 TAGGAATGTT
136527 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* * *
136576 AAGATGATAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATG---AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* *
136627 ---A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTAA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-A
* * * * *
136672 AAGATGAGGGTGCTAATATGCTGATTCAAGGCCAGCGATACTGGACTT-
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* *
136720 --G--G-AGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* * *
136764 AAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* * * * *
136813 GAGGTGAAGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* * * *
136862 AAGGTGAAGATGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* * * **
136911 AAGGTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGATATTGAGTTTTA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTG-GACTTA
* * *
136961 AAGATGAAGGTGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTTA
1 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
137010 GAAGA
1 -AAGA
137015 AGACGCCATC
Statistics
Matches: 372, Mismatches: 49, Indels: 35
0.82 0.11 0.08
Matches are distributed among these distances:
43 71 0.19
44 1 0.00
46 2 0.01
48 3 0.01
49 174 0.47
50 82 0.22
52 39 0.10
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (49 bp):
AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
Found at i:136863 original size:98 final size:96
Alignment explanation
Indices: 136525--137009 Score: 617
Period size: 98 Copynumber: 5.0 Consensus size: 96
136515 CTTAGGAATG
* *
136525 TTAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAAGGC
1 TTAAG-TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGT
136590 GCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
62 GCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * *
136625 TT-A---AAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTAAAAGATGAGGGTGCT
1 TTAAGTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGATGAAGGTGCC
*
136686 AATATGCTGATTCAAGGCCAGCGATACTGGAC
65 AATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
136718 TT--G-G-AGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCA
1 TTAAGTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCA
136779 ATATGCTGATTCAAGGCCAGCGATATTGGAC
66 ATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
136810 TTAGAGGTGAAGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGATGC
1 TTA-A-GTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * *
136875 CAATGTACTGATTCAAGGCCAGCTACATTGGAC
64 CAATATGCTGATTCAAGGCCAGCGATATTGGAC
* **
136908 TTAAAGGTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGATATTGAGTTTTAAAGATGAAGGTG
1 TT-AA-GTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTG-GACTTAAAGATGAAGGTG
*
136973 CCAATATGCTGGTTCAAGGCCAGCGATATTGGAC
63 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC
137007 TTA
1 TTA
137010 GAAGAAGACG
Statistics
Matches: 341, Mismatches: 33, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
92 46 0.13
93 76 0.22
95 40 0.12
96 8 0.02
97 1 0.00
98 121 0.35
99 47 0.14
100 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (96 bp):
TTAAGTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCA
ATATGCTGATTCAAGGCCAGCGATATTGGAC
Found at i:137103 original size:28 final size:27
Alignment explanation
Indices: 137072--137158 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
137062 TGTGCTTTTG
*
137072 AAGGTTGCCACTGACTTGTGGGCTTTAA
1 AAGGGTGCCACTGACTTGTGGGC-TTAA
**
137100 AAGGGGTGCCACCAACTTGTGGGCTTAA
1 AA-GGGTGCCACTGACTTGTGGGCTTAA
* *
137128 AAGGGTGCCA-TAGAGTTGTGGACTTAA
1 AAGGGTGCCACT-GACTTGTGGGCTTAA
137155 AAGG
1 AAGG
137159 AAAAAGAGTG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 24 0.48
28 8 0.16
29 18 0.36
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (27 bp):
AAGGGTGCCACTGACTTGTGGGCTTAA
Found at i:137170 original size:34 final size:34
Alignment explanation
Indices: 137126--137291 Score: 199
Period size: 34 Copynumber: 4.8 Consensus size: 34
137116 TTGTGGGCTT
* **
137126 AAAAGGGTGCCATAGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
137160 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
137194 AGAAA-TGTGCCACGGAGTTGTGGACTTAGAAGGA
1 A-AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
137228 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TT-AAAAGGA
*
137264 AAAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGA-GTGCCACGGAGTTGTGGACTT
137292 TAGAAGGTTG
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
33 3 0.03
34 75 0.67
35 5 0.04
36 12 0.11
37 17 0.15
ACGTcount: A:0.36, C:0.11, G:0.33, T:0.20
Consensus pattern (34 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:137246 original size:68 final size:71
Alignment explanation
Indices: 137126--137298 Score: 244
Period size: 68 Copynumber: 2.5 Consensus size: 71
137116 TTGTGGGCTT
* ** * *
137126 AAAAGGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA
*
137189 AAG-GA
66 AAGAAA
* *
137194 AGAAATGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA
137259 AAGAAA
66 AAGAAA
137265 AAAAAGGTGCCACGGAGTTGTGGACTTTAGAAGG
1 AAAAAGGTGCCACGGAGTTGTGGAC-TTAGAAGG
137299 TTGCCACTGG
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
68 52 0.57
69 2 0.02
70 5 0.05
71 24 0.26
72 8 0.09
ACGTcount: A:0.36, C:0.11, G:0.33, T:0.20
Consensus pattern (71 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA
AAGAAA
Found at i:137320 original size:28 final size:28
Alignment explanation
Indices: 137289--137355 Score: 71
Period size: 29 Copynumber: 2.4 Consensus size: 28
137279 GAGTTGTGGA
* *
137289 CTTTAGAAGGTTGCCACTGGCTTATGGG
1 CTTTAGAAGGATGCCACTGACTTATGGG
* * *
137317 CTTTGGAAAAGATGCCACTGACTTGTGGG
1 CTTTAG-AAGGATGCCACTGACTTATGGG
*
137346 CTTTTGAAGG
1 CTTTAGAAGG
137356 GCGAGGAATG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
28 8 0.26
29 23 0.74
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.31
Consensus pattern (28 bp):
CTTTAGAAGGATGCCACTGACTTATGGG
Found at i:152385 original size:24 final size:24
Alignment explanation
Indices: 152358--152406 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
152348 TTATCAATTC
*
152358 AACTAAA-ACTAAATAAAATAAGTA
1 AACTAAAGAC-AAAAAAAATAAGTA
*
152382 AACTAAAGACAAAAAAAATATGTA
1 AACTAAAGACAAAAAAAATAAGTA
152406 A
1 A
152407 GATGAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.67, C:0.08, G:0.06, T:0.18
Consensus pattern (24 bp):
AACTAAAGACAAAAAAAATAAGTA
Found at i:154037 original size:52 final size:52
Alignment explanation
Indices: 153959--154087 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
153949 CGAAATATGA
* *
153959 AAATTTGCCTGCATGTATTGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
* * *
154011 AAATTCGCCTACATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
154063 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
154088 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
Found at i:154098 original size:52 final size:51
Alignment explanation
Indices: 153959--154107 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 51
153949 CGAAATATGA
* *
153959 AAATTTGCCTGCATGTATTGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
* * *
154011 AAATTCGCCTACATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
*
154063 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
154108 ATGTATCGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTAGGC
Found at i:154114 original size:13 final size:13
Alignment explanation
Indices: 154096--154120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
154086 CAAAGATCAG
154096 TGTATCGATACAA
1 TGTATCGATACAA
154109 TGTATCGATACA
1 TGTATCGATACA
154121 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:154187 original size:19 final size:18
Alignment explanation
Indices: 154163--154260 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
154153 TAGCTTAAAT
154163 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
154182 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
154195 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
154214 TGTATCGATAC--A-TTA
1 TGTATCGATACAAACTTA
154229 --TATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
154247 TGTATCGATACAAA
1 TGTATCGATACAAA
154261 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 20 0.30
14 1 0.02
15 3 0.05
16 4 0.06
18 4 0.06
19 23 0.35
20 11 0.17
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:154200 original size:13 final size:13
Alignment explanation
Indices: 154182--154238 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
154172 ACAAAACTTA
154182 TGTATCGATACAT
1 TGTATCGATACAT
154195 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
154213 ATGTATCGATACAT
1 -TGTATCGATACAT
*
154227 TATATCGATACA
1 TGTATCGATACA
154239 ACACTTTATG
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 20 0.54
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:154202 original size:32 final size:32
Alignment explanation
Indices: 154161--154258 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
154151 AGTAGCTTAA
*
154161 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
154193 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
*
154225 ATTATATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
154258 A
1 A
154259 AATCGTTGAA
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
32 48 0.76
33 15 0.24
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:154626 original size:28 final size:27
Alignment explanation
Indices: 154592--155171 Score: 531
Period size: 28 Copynumber: 20.7 Consensus size: 27
154582 CACTAAGTTA
154592 TGTGGGCTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTTGAA-AGATGCCACTGACT
*
154620 TGTGGGCTTTGAAAAGAGTTGCCACCGACCT
1 TGTGGGCTTTG-AAAGA--TGCCACTGA-CT
* * * **
154651 GTGTGTGCTTTTAAAGGGTGCCACCAACT
1 -TGTGGGCTTTGAAA-GATGCCACTGACT
*
154680 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAA-GATGCCACTGACT
* *
154708 TGTGGGCTTTGAAAAGAAGCCACTAACT
1 TGTGGGCTTTG-AAAGATGCCACTGACT
154736 TGTGGGCTTTGAAAAGATGCCACT-A--
1 TGTGGGCTTTG-AAAGATGCCACTGACT
*
154761 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAA-GATGCCACTGACT
154789 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTG-AAAGATGCCACTGACT
*
154817 TGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAA-GATGCCACTGACT
* * * *
154845 TATGGCCTTTGAAAGGGTGCCACCGACT
1 TGTGGGCTTTGAAA-GATGCCACTGACT
*
154873 TGTGGGCTTTGAAAGGTTATGCCACTAACT
1 TGTGGGCTTTGAAA-G--ATGCCACTGACT
** * *
154903 TGTGGATTTTGAAGGGGTGCCACTGACT
1 TGTGGGCTTTGAA-AGATGCCACTGACT
* * *
154931 TGTGGGCTTTGAAGGGGTGGCACTGACT
1 TGTGGGCTTTGAA-AGATGCCACTGACT
* *
154959 TGTGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAA-GATGCCACTGACT
* * *
154987 TGTGGGCTTTAAAAGGTGCCATTGACT
1 TGTGGGCTTTGAAAGATGCCACTGACT
* *
155014 TGTGGTCTTTTGAAGAGATGCCACTAACT
1 TGTGGGC-TTTGAA-AGATGCCACTGACT
* *
155043 TGT-GGTTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAA-GATGCCACTGACT
* **
155070 TATGGGCTTTGAAAAGATGCCACAAACT
1 TGTGGGCTTTG-AAAGATGCCACTGACT
*
155098 TGTGGGCTTTGAAAAGATG-CACTAACT
1 TGTGGGCTTTG-AAAGATGCCACTGACT
* *
155125 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAA-GATGCCACTGACT
*
155153 TATGGGCTTTGAAGAGATG
1 TGTGGGCTTTGAA-AGATG
155172 AACGTTCTAG
Statistics
Matches: 474, Mismatches: 53, Indels: 50
0.82 0.09 0.09
Matches are distributed among these distances:
24 3 0.01
25 20 0.04
26 5 0.01
27 64 0.14
28 302 0.64
29 28 0.06
30 37 0.08
31 5 0.01
32 10 0.02
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (27 bp):
TGTGGGCTTTGAAAGATGCCACTGACT
Found at i:154738 original size:56 final size:56
Alignment explanation
Indices: 154574--155165 Score: 608
Period size: 56 Copynumber: 10.5 Consensus size: 56
154564 GGCTTTTAAA
* *
154574 AAAGG-TGCCACTAAGTTATGTGGGCTTTG-AAGAGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTAA-CT-TGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGGCTTTG
* * * * * * *
154631 AAAAGAGTTGCCACCGACCTGTGTGTGCTTTTAAAGGGTGCCACCAACTTGTGGGCTTTG
1 -AAAG-GATGCCA-CTAACT-TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
* *
154691 AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAAGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
*
154747 AAAAGATGCCACT-A--TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
* * * * * *
154800 AAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGATTTATGGCCTTTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
* ** **
154856 AAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGTTATGCCACTAACTTGTGGATTTTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGG--ATGCCACTAACTTGTGGGCTTTG
* * * * * * *
154914 AAGGGGTGCCACTGACTTGTGGGCTTTGAAGGGGTGGCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
* * * * * * *
154970 AAAGGGTGCCATTGACTTGTGGGCTTTAAAAGG-TGCCATTGACTTGTGGTCTTTTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTG
* * * *
155026 -AAGAGATGCCACTAACTTGT-GGTTTTGAAAGGATACCACTGACTTATGGGCTTTG
1 AAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
* * *
155081 AAAAGATGCCACAAACTTGTGGGCTTTGAAAAGATG-CACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
* *
155136 AAAGGATGCCACTAACCTATGGGCTTTGAA
1 AAAGGATGCCACTAACTTGTGGGCTTTGAA
155166 GAGATGAACG
Statistics
Matches: 452, Mismatches: 68, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
53 50 0.11
54 1 0.00
55 91 0.20
56 202 0.45
57 4 0.01
58 58 0.13
59 5 0.01
60 36 0.08
61 5 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (56 bp):
AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG
Found at i:154886 original size:84 final size:84
Alignment explanation
Indices: 154592--155165 Score: 624
Period size: 84 Copynumber: 6.8 Consensus size: 84
154582 CACTAAGTTA
* * *
154592 TGTGGGCTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAAGAGTTGCCACCGACCTGTGTG
1 TGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGGCTTTG-AAAG-GATGCCACTGA-CT-TGTG
* * * **
154656 TGCTTTTAAAGGGTGCCACCAACT
61 GGCTTTGAAAGGATGCCACTGACT
* * *
154680 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAAGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
154745 TGAAAAGATGCCACT-A--
66 TGAAAGGATGCCACTGACT
*
154761 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
154826 TGAAAGGATGCCACTGATT
66 TGAAAGGATGCCACTGACT
* * * ** * **
154845 TATGGCCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAAGGTTATGCCACTAACTTGTGGAT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGG--ATGCCACTGACTTGTGGGC
* *
154910 TTTGAAGGGGTGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * * *
154931 TGTGGGCTTTGAAGGGGTGGCACTGACTTGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
154996 TAAAAGG-TGCCATTGACT
66 TGAAAGGATGCCACTGACT
* * * *
155014 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGT-GGTTTTGAAAGGATACCACTGACTTATGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* **
155077 TTTGAAAAGATGCCACAAACT
64 TTTGAAAGGATGCCACTGACT
* * * *
155098 TGTGGGCTTTGAAAAGATG-CACTAACTTGTGGGCTTTGAAAGGATGCCACTAACCTATGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
155162 TGAA
66 TGAA
155166 GAGATGAACG
Statistics
Matches: 415, Mismatches: 60, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
81 77 0.19
82 12 0.03
83 93 0.22
84 111 0.27
85 2 0.00
86 80 0.19
87 3 0.01
88 34 0.08
89 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (84 bp):
TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
TGAAAGGATGCCACTGACT
Done.