Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1611
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 379729
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 2 of 3
Found at i:190496 original size:55 final size:55
Alignment explanation
Indices: 190336--190747 Score: 533
Period size: 55 Copynumber: 7.4 Consensus size: 55
190326 AAAGGAGAGA
* *
190336 GCGTCCTGCTGTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAAG
* * *
190393 AAAGCATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTATGGGCTTTAAAAG
1 ---GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
190450 GCGTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAACG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
**
190505 GCGTCCTGCTCTTTGAGGACAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
* *
190561 AAAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTCTGTGGGCTTTAAAAG
1 ---GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
190619 GAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
190673 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAGAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
190728 GTGTCCTACTCTTTGAGGAC
1 GCGTCCTGCTCTTTGAGGAC
190748 AAAAAGGCGA
Statistics
Matches: 314, Mismatches: 31, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
54 70 0.22
55 142 0.45
56 3 0.01
57 5 0.02
58 5 0.02
59 70 0.22
60 19 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:190571 original size:114 final size:110
Alignment explanation
Indices: 190336--190754 Score: 538
Period size: 114 Copynumber: 3.7 Consensus size: 110
190326 AAAGGAGAGA
* * *
190336 GCGTCCTGCTGTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAAG---GCGT
** *
190400 CCTGCTCTTTGAGGAC-TGAAGGTGCCACCAACTTGTATGGGCTTTAAAAG
60 CCTGCTCTTTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
190450 GCGTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAACGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
*
190515 CTTTGAGGACAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAG
66 CTTTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG
* * *
190561 AAAGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTCTGTGGGCTTTAAAAGGAGTCCT
1 ---GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCT
**
190626 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTAAAAG
63 GCTCTTTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * * *
190673 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAGAGGTGTCCTACT
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
190738 CTTTGAGGACAAAAAGG
66 CTTTGAGGACAAAAAGG
190755 CGAAAGGAGA
Statistics
Matches: 269, Mismatches: 30, Indels: 17
0.85 0.09 0.05
Matches are distributed among these distances:
109 92 0.34
110 25 0.09
111 5 0.02
112 8 0.03
113 2 0.01
114 136 0.51
115 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (110 bp):
GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
CTTTGAGGACAAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:190615 original size:169 final size:168
Alignment explanation
Indices: 190336--191153 Score: 739
Period size: 169 Copynumber: 5.0 Consensus size: 168
190326 AAAGGAGAGA
* **
190336 GCGTCCTGCTGTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGCATC
1 GCGTCCTGCTCTTTGAGGAC-AAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAAGAAAGCATC
* *
190401 CTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTATGGGCTTTAAAAGGCGTCCTGCTCTTTG
64 CTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
* *
190465 AAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAACG
129 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
190505 GCGTCCTGCTCTTTGAGGACAAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATCC
1 GCGTCCTGCTCTTTGAGGAC-AAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATCC
* *
190570 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTCTGTGGGCTTTAAAAGGAGTCCTGCTCTTTGA
65 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
*
190635 GGACTGAAAGGTGCCACCAACTTGTGTGGGC-TTAAAAG
130 GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * **
190673 GCGTCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACCTGTGTGGGCTTT---AAG-AGGTGTC
1 GCGTCCTGCTCTTTGAGGAC--AAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATC
* * * * *
190733 CTACTCTTTGAGGAC-AAAAAG-GCGA--AA-----G-GAG----AGAA--CGTCCTGCTCTTTG
64 CTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
* *
190782 AGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAA
129 AGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAG
* * ** * *
190828 GCGTCCTACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAGAAGGCATC
1 GCGTCCTGCTCTTTGAGGACAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA--AGAAAGCATC
* *
190892 CTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTG
64 CTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
* * * * *
190957 AGGAC-AAAAAG-GCGA--AA-----G-GAG---AG-AA-
129 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
*** ** *
190982 -CGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGT
1 GCGTCCTGCTCTTTGA-GGACAAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAA-AGAAAGCAT
* * * *
191046 CCTACTTTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGC
63 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTT--TA--A-AAGGCGTCCTGC
*
191110 TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA
123 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA
191154 GAAAGGTTGC
Statistics
Matches: 528, Mismatches: 65, Indels: 108
0.75 0.09 0.15
Matches are distributed among these distances:
148 40 0.08
149 5 0.01
150 3 0.01
153 17 0.03
154 71 0.13
155 49 0.09
156 5 0.01
157 1 0.00
158 3 0.01
159 41 0.08
160 12 0.02
161 6 0.01
162 3 0.01
163 9 0.02
164 18 0.03
165 5 0.01
166 1 0.00
168 80 0.15
169 129 0.24
171 2 0.00
172 1 0.00
173 8 0.02
174 1 0.00
175 18 0.03
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (168 bp):
GCGTCCTGCTCTTTGAGGACAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCATCCT
GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:190868 original size:60 final size:59
Alignment explanation
Indices: 190768--190936 Score: 241
Period size: 60 Copynumber: 2.8 Consensus size: 59
190758 AAGGAGAGAA
190768 CGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
1 CGTCCTGCTCTTTGAGGACT--GAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
* * * *
190829 CGTCCTACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
*
190888 CATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 CGTCCTGCTCTTTGAGGACTG--AAGTGCCACCAACTTGTGTGGGCTTT
190937 GAAAGGCGTC
Statistics
Matches: 97, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
59 33 0.34
60 42 0.43
61 22 0.23
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (59 bp):
CGTCCTGCTCTTTGAGGACTGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
Found at i:190931 original size:214 final size:215
Alignment explanation
Indices: 190567--191155 Score: 983
Period size: 214 Copynumber: 2.8 Consensus size: 215
190557 AAAGAAAGCA
* *
190567 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTCTGTGGGCTTT-AAAAG-G--A--GTCC
1 TCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCC
* *
190625 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT---A--A-AAGGCGTCCTGCTC
65 TACTTTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTC
* * *
190684 TTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTT-AAGAGGTGTCCTACTCTTTGAGGAC
129 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTACTCTTTGAGGAC
190748 AAAAAGGCGAAAGGAGAGAACG
194 AAAAAGGCGAAAGGAGAGAACG
190770 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCCT
*
190835 ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCATCCTGCTCTT
66 ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCTT
190900 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTCCTACTCTTTGAGGACAA
131 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTACTCTTTGAGGACAA
190964 AAAGGCGAAAGGAGAGAACG
196 AAAGGCGAAAGGAGAGAACG
190984 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCCT
191049 ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCTT
66 ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCTT
191114 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGA
131 TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGA
191156 AAGGTTGCTT
Statistics
Matches: 362, Mismatches: 9, Indels: 18
0.93 0.02 0.05
Matches are distributed among these distances:
203 43 0.12
204 6 0.02
205 1 0.00
207 1 0.00
208 26 0.07
209 18 0.05
211 1 0.00
213 1 0.00
214 262 0.72
215 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (215 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGCGTCCT
ACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAAAAGGAGAAGGCGTCCTGCTCTT
TGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCGTCCTACTCTTTGAGGACAA
AAAGGCGAAAGGAGAGAACG
Found at i:191082 original size:60 final size:59
Alignment explanation
Indices: 190982--191150 Score: 250
Period size: 60 Copynumber: 2.8 Consensus size: 59
190972 AAGGAGAGAA
190982 CGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
1 CGTCCTGCTCTTTGAGGACT--GAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
* * * *
191043 CGTCCTACTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC-TTAAAAGGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
191102 CGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 CGTCCTGCTCTTTGAGGACTG--AAGTGCCACCAACTTGTGTGGGCTTT
191151 GAAGAAAGGT
Statistics
Matches: 98, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
59 34 0.35
60 42 0.43
61 22 0.22
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (59 bp):
CGTCCTGCTCTTTGAGGACTGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAG
Found at i:195197 original size:35 final size:35
Alignment explanation
Indices: 195132--195314 Score: 277
Period size: 35 Copynumber: 5.4 Consensus size: 35
195122 TCATTTTTAT
195132 CCATCATTCCATGCCTTCA-TTTTTTATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
*
195166 CCATCATTCTATGCCTTCATTTTTTTATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
*
195201 CCATCATTCCATGCCTTCATTTTTATATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
* *
195236 CCATCATCCCATG--TT--TTTTTTTATTTCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
* *
195267 CCATCATTCCATACCTTCATTTTTATATTCCATGC
1 CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
195302 CCATCATTCCATG
1 CCATCATTCCATG
195315 TTTTTTATTT
Statistics
Matches: 133, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
31 25 0.19
33 4 0.03
34 18 0.14
35 86 0.65
ACGTcount: A:0.19, C:0.31, G:0.05, T:0.45
Consensus pattern (35 bp):
CCATCATTCCATGCCTTCATTTTTTTATTCCATGC
Found at i:195275 original size:66 final size:66
Alignment explanation
Indices: 195132--195320 Score: 299
Period size: 66 Copynumber: 2.8 Consensus size: 66
195122 TCATTTTTAT
*
195132 CCATCATTCCATGCCTTCATTTTT-TATTCCATGCCCATCATTCTATGCCTTCATTTTTTTATTC
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATG--TT--TTTTTTTATTC
195196 CATGC
62 CATGC
* *
195201 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATCCCATGTTTTTTTTTATTTCATG
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTTTTTTTTTATTCCATG
195266 C
66 C
*
195267 CCATCATTCCATACCTTCATTTTTATATTCCATGCCCATCATTCCATGTTTTTT
1 CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTTTTTT
195321 ATTTCTTGAT
Statistics
Matches: 114, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
66 67 0.59
68 2 0.02
69 24 0.21
70 21 0.18
ACGTcount: A:0.19, C:0.30, G:0.05, T:0.47
Consensus pattern (66 bp):
CCATCATTCCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGTTTTTTTTTATTCCATG
C
Found at i:196309 original size:62 final size:62
Alignment explanation
Indices: 196173--197510 Score: 1628
Period size: 62 Copynumber: 21.6 Consensus size: 62
196163 GCCTTATTTT
* * * * *
196173 CCTTTAGTCCTCAAAGAGTAGGATGGCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-
1 CCTTTAGTCCTCAAAGAGCAGGA-CGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
196235 CCATTAATCCTCAAAAAGCAAGACACCTTTTTCTTTTTAAAGCCCATATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
*
196297 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
196359 CCTTTAGTCCTCAAAGAGTAGGATGTCTTTTTCTTTTTAAAGCCCACACGAGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
196421 CCTTTAGTCCTCAAAGGGTAGGAC-ACTTTTTCCTTTTCAAAGCCCATACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * ** ** * *
196483 CTTTTAGT-CTTAAAAAGCAAGACGCCTTTTCCTTTTTGAAGTGCACATGAGCTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * ** * * * * * *
196544 CTTTTTAGTCTTCAAAGAATAGAAAGCC-TTTCCTTTTTAAAGCCCACACGAGTTGCTAGCAC
1 C-CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
196606 CCTTTAGTCTTCAAAGAGTAGGACGTCTTTTCCTTTTCAAAGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
196668 CCTTTAGTCCTCAAAGAACA-TACACTTTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGC-CTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
*
196730 CCTTTAGTCCTCGAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * * * * *
196792 CCTTTAGTTTTTAAAGAGTAGGACGGCTCTTTCTTTTCAAAGCTCACAAGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
196854 CCTTTAGTCCTCAAAAAGTAGGATG-CTTTTTACTTTTCAAAGTCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCAC
* *
196916 CCTTTAGTCTTTAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
** *
196978 CCTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
197040 CCTTTAGTCTTCAAAGAGCAAGACGTCTTTTTCTTTTCAAAGCCCATACAAGTTGGTAGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
197102 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTAGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
197164 CCTTTAGTCTTCAAAGAACAAGATGCCTTTTTCTTTACAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
197226 CCTTTAGTCCTCAAAGAGCATGACGTCTTTTTTTTTTCAAAG-CCACACGAGTTGATGGCAT
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
197287 CCTTTAGTCCTTAAAGAGCAGGCCGTCTTTTTCTTTTCAAAGCCCACACGAGCTGGTGGCAT
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* ** *
197349 CCTTTAGTCCTCAAAGAGTAGGACGTTTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
*
197411 CCTTTAGTCCTCAAACAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
197473 CTTTTAGTCCTCAAAAAGCAGGAAGCCTTTTTCTTTTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC
197511 TCATTTGTCG
Statistics
Matches: 1099, Mismatches: 166, Indels: 22
0.85 0.13 0.02
Matches are distributed among these distances:
61 155 0.14
62 925 0.84
63 19 0.02
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (62 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
Found at i:197812 original size:62 final size:62
Alignment explanation
Indices: 197715--198737 Score: 1193
Period size: 62 Copynumber: 16.6 Consensus size: 62
197705 TTTCTTTCTT
* * * *
197715 CCTTT-GTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGTCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
197776 CCTTTAATCTTCAAAGAGCAGGACACATTTTCCTTTTCAAAGCCCACATGAGTTGGTAGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
197838 CCTTTAGTCCTCTAAGAGTAGGACGCCTTTTCCTTTTTAAAGCCTACACGAGCTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
197900 CTTTTTAGTCCTCAAAGAGCAAGATGCC-TTTCCTTTTTAAAGCCCACATGAGTTGGTGGCAC
1 C-CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
197962 ACTTTAGTCCTCAAAGAAG-AGGATGCCTTTTTCTTTTCAAAGCCTACATGTGTTGGTGGCAC
1 CCTTTAGTCCTCAAAG-AGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
198024 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTATTTTCAATGCCCACTCGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * ** * *
198086 TCTTTAGTCCTTAAAAAGGAGGACATCTTTTTCTTTTCAAAGCCCACACAAGATGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
198148 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT-GTTACAAAGCCCACACAAGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
198209 CCTTTAGTCCTCAAAGAGTAGGACATCC-TTTTCTTTTCAAAGCCTACACGAGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGAC-GCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
198271 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACA--AG-TGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* ** * * * *
198330 CCTTTAGTCTTCAAAGAGCAACACTCATCTTTCTTTTCAAAGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
198392 TCTTTAGTCCTCAAAGAGTAGGACGTCTTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
198454 CCTTTAGTCCTTAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTTGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
*
198516 CCTTTAGTCTTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
198578 CCTTTAGTCCTCAAAGAGCATGACGTCTTTTTTTTTTCAAAG-TCATACGAGTTGATGGCAT
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
198639 CCTTTAGTCCTTAAAGAGCAGGACGTC-TTTTCTTTTCAAAGCCTACACGAGCTGGTGGTAT
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
*
198700 CCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCTTTTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC
198738 TCATTTGTCG
Statistics
Matches: 818, Mismatches: 131, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
59 47 0.06
60 15 0.02
61 161 0.20
62 574 0.70
63 21 0.03
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (62 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
Found at i:198035 original size:186 final size:185
Alignment explanation
Indices: 197715--199969 Score: 1781
Period size: 186 Copynumber: 12.2 Consensus size: 185
197705 TTTCTTTCTT
* * *
197715 CCTTT-GTCCTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGTCCACACAAGTTGGTGGCACCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * * * *
197779 TTAATCTTCAAAGAGCAGGACACATTTTCCTTTTCAAAGCCCACATGAGTTGGTAGCACCCTTTA
66 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTA
* * *
197844 GTCCTCTAAGAGTAGGACGCCTTTTCCTTTTTAAAGCCTACACGAGCTGGTGGCAC
131 GTCCTCAAAGAGTAGGACGCCTTTT-CTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
197900 CTTTTTAGTCCTCAAAGAGCAAGATGCC-TTTCCTTTTTAAAGCCCACATGAGTTGGTGGCACAC
1 C-CTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
197964 TTTAGTCCTCAAAGAAG-AGGATGCCTTTTTCTTTTCAAAGCCTACATGTGTTGGTGGCACCCTT
65 TTTAGTCCTCAAAG-AGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTT
* * * *
198028 TAGTCCTCAAAGAGCAGGATGCCTTTT-TATTTTCAATGCCCACTCGAGTTGGTGGCAC
129 TAGTCCTCAAAGAGTAGGACGCCTTTTCT-TTTT-AAAGCCCACACGAGTTGGTGGCAC
* * * * *** * * *
198086 TCTTTAGTCCTTAAAAAGGAGGACATCTTTTTCTTTTCAAAGCCCACACAAGATGGTGGCACCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * * ** *
198151 TTAGTCCTCAAAGAGTAGGATGCCTTTTT-GTTACAAAGCCCACACAAGTTAGTGGCACCCTTTA
66 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTA
* * * *
198215 GTCCTCAAAGAGTAGGACATCCTTTTCTTTTCAAAGCCTACACGAGTTAGTGGCAC
131 GTCCTCAAAGAGTAGGAC-GCCTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
198271 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACA--AG-TGGTGGCACCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* ** * * * *
198333 TTAGTCTTCAAAGAGCAACACTCATCTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACTCTTTA
66 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTA
* *
198398 GTCCTCAAAGAGTAGGACGTCTTTTTTTTTTCAAAGCCCACACGAGTTGGTGGCAC
131 GTCCTCAAAGAGTAGGACGCCTTTTCTTTTT-AAAGCCCACACGAGTTGGTGGCAC
* *
198454 CCTTTAGTCCTTAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTTGCACCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* *
198519 TTAGTCTTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
66 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTA
* * * * * * * *
198584 GTCCTCAAAGAGCATGACGTCTTTTTTTTTTCAAAG-TCATACGAGTTGATGGCAT
131 GTCCTCAAAGAGTAGGACGCCTTTTCTTTTT-AAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
198639 CCTTTAGTCCTTAAAGAGCAGGACGTCTTTT-CTTTTCAAAGCCTACACGAGCTGGTGGTATCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* ** *** * *** * *
198703 TTAGTCCTCAAAAAGCAGGACGCCTTTTTCTTTTCTCATTTGTCGTTCAAGAGCAAG-AG-A-CA
66 TTAGTCCTCAAAGAGCAGGACGCCTTTTTC-TTT-TCA-AAG-CCCACATGAGTTGGTGGCACCC
* * *** * ** * * * * * ** **
198765 TTTCATTTCCTC-----CT-TTTC-CCTTTTGTCCTCATAGATCAAGACGCA-TATTTTTCCTTT
127 TTT-A-GTCCTCAAAGAGTAGGACGCCTTTTCTTTTTAAAG-CCCACACG-AGT-TGGTGGC---
**
198822 TT
184 AC
* ** * *** * *
198824 CCTTT-GTCCGCAAAGAGTAGGGCGCACCTCATTTGCTTTTCTCTTTTGTCTTCGAAGAGCAAGA
1 CCTTTAGTCCTCAAAGAGTAGGATG--CCT--TTT-CCTTT-TC-AAAG-C--C---CA-CACGA
* ** * * * * *
198888 CGTACTGATTTTCA--CTTT-GTTCTTAATA-AGAAGGAC-AC-TTTCCTTTT-----------T
52 -GT--TG-GTGGCACCCTTTAGTCCTCAA-AGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACAT
* * * * * ** * *
198936 --CTT--T--C-CTCCTTT-GTCCTCAAAGCGTATGATGCCTTTTTTTTTCGAAGTCCACACAAG
112 GAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTTAAAGCCCACACGAG
*
198993 TTAGTGGCAC
176 TTGGTGGCAC
* * * ** *
199003 CCGTTAATCTTCAAAGAGTAGGACACCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * * * * *
199068 TTAGTCCTCAAAGAGTAGGATGCCTTTTCCCTTTCAAAGCTCACACGAGTTAGTGGCACCCTTTA
66 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTA
* *
199133 GTCCTCAAAGAGTAGGACGCCTTTTCCTTTTTAAAGCCTACACGAGCTGGTGGCAC
131 GTCCTCAAAGAGTAGGACGCCTTTT-CTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * * *
199189 CTTTTTAGTCTTCAAAGAGCT-GGATGCC-TTTCCTTTTTAAAGCCCACACGAGTTGGTGGCACA
1 C-CTTTAGTCCTCAAAGAG-TAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * *
199252 CTTTAGTCCTTAAAGAGGAGGACGTCTTTTTCTTTTCAAAGCCTACATGTGTTAGTGGCACCCTT
64 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTT
* *
199317 TAGTCCTCAAAGAGCAGGATGCCTTTT-TATTTTCAAAGCCCACACGAGTTGGTGGCAC
129 TAGTCCTCAAAGAGTAGGACGCCTTTTCT-TTTT-AAAGCCCACACGAGTTGGTGGCAC
* * * * *** * * *
199375 TCTTTAGTCCTTAAAAAGCAGGACATCTTTTTCTTTTCAAAGCACACACGAGATGGTGGCACCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
** * *
199440 TTAGTCCTCAAAGAGCAAGG-CATCTTTTTCTTTTCAAAGCCTACACGAGTTGGTGGCACCCTTT
66 TTAGTCCTCAAAGAGC-AGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTT
* * *
199504 AGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTT-TTGGCAC
130 AGTCCTCAAAGAGTAGGACGCCTTTT-CTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * * ** *
199560 TCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTTCAAAGCCCACATGAGTTGGTGGCACCCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * * *
199625 TTAGTCCTCAAAAAGCAGGATGCCTTTTTTCTTTTCAAAGCCCACGTGAGTTTGTGACACCCTTT
66 TTAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTT
* * * * *
199690 AGTCCTGAAAGAGCAGGACGCTTTTTTCTTTTCAAAGCCCACAGGAGTTGGTGGCAC
130 AGTCCTCAAAGAGTAGGACGC-CTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
199747 CCTTTAGTCCTGAAAGTGTAGGACGTCTTTTTCTTTTCAAACCCCACACGTGTTGGTGGCA-CCT
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * * * *
199811 TTAGTCCTTACAGAGCATGATGCCTTTTTCTTTTCAAAGCCCATATGATTTGGTGGCACCCTTTA
66 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTA
* ** *
199876 GTCCTCAAAGAGGAGGACGTTTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
131 GTCCTCAAAGAGTAGGACG-CCTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* *
199932 CTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTC
1 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTC
199970 TCCTTTGTCC
Statistics
Matches: 1657, Mismatches: 313, Indels: 200
0.76 0.14 0.09
Matches are distributed among these distances:
162 3 0.00
163 2 0.00
164 5 0.00
165 14 0.01
166 4 0.00
167 9 0.01
170 1 0.00
172 1 0.00
173 1 0.00
174 2 0.00
175 4 0.00
176 3 0.00
177 5 0.00
178 3 0.00
179 7 0.00
180 27 0.02
181 7 0.00
182 52 0.03
183 125 0.08
184 93 0.06
185 430 0.26
186 686 0.41
187 116 0.07
188 12 0.01
190 3 0.00
191 2 0.00
192 1 0.00
193 1 0.00
195 1 0.00
196 1 0.00
197 3 0.00
198 5 0.00
199 5 0.00
200 14 0.01
201 5 0.00
202 2 0.00
203 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (185 bp):
CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTA
GTCCTCAAAGAGTAGGACGCCTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
Found at i:199052 original size:62 final size:62
Alignment explanation
Indices: 198943--199969 Score: 1195
Period size: 62 Copynumber: 16.6 Consensus size: 62
198933 TTTCTTTCCT
* * * * * * *
198943 CCTTT-GTCCTCAAAGCGTATGATGCCTTTTT-TTTTCGAAGTCCACACAAGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
199003 CCGTTAATCTTCAAAGAGTAGGACACCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
199065 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCCTTTCAAAGCTCACACGAGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
199127 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTTAAAGCCTACACGAGCTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
199189 CTTTTTAGTCTTCAAAGAGCT-GGATGCC-TTTCCTTTTTAAAGCCCACACGAGTTGGTGGCAC
1 C-CTTTAGTCCTCAAAGAG-TAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
199251 ACTTTAGTCCTTAAAGAGGAGGACGTCTTTTTCTTTTCAAAGCCTACATGTGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
199313 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTATTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * ** * *
199375 TCTTTAGTCCTTAAAAAGCAGGACATCTTTTTCTTTTCAAAGCACACACGAGATGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* ** *
199437 CCTTTAGTCCTCAAAGAGCAAGG-CATCTTTTTCTTTTCAAAGCCTACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAG-TAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
199499 CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTCAAAGCCCACACGAGTT-TTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
199560 TCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTTTCAAAGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * *
199622 CCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTTCTTTTCAAAGCCCACGTGAGTTTGTGACAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCC-TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
199685 CCTTTAGTCCTGAAAGAGCAGGACGCTTTTTTCTTTTCAAAGCCCACAGGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
199747 CCTTTAGTCCTGAAAGTGTAGGACGTCTTTTTCTTTTCAAACCCCACACGTGTTGGTGGCA-
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
199808 CCTTTAGTCCTTACAGAGCATGATGCCTTTTTCTTTTCAAAGCCCATATGATTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* **
199870 CCTTTAGTCCTCAAAGAGGAGGACGTTTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* *
199932 CTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTC
1 CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTC
199970 TCCTTTGTCC
Statistics
Matches: 822, Mismatches: 134, Indels: 20
0.84 0.14 0.02
Matches are distributed among these distances:
60 4 0.00
61 144 0.18
62 595 0.72
63 78 0.09
64 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (62 bp):
CCTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
Found at i:200090 original size:85 final size:83
Alignment explanation
Indices: 199931--200128 Score: 228
Period size: 85 Copynumber: 2.4 Consensus size: 83
199921 GTTGGTGGCA
199931 CCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCTCCTTTGTCCTCAAACAGTAGGACAC
1 CCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCTCCTTTGTCCTCAAACAGTAGGACAC
199996 ATTTCATTTCCTTCTTTTC
66 ATTTCATTTCCTT-TTTTC
* * * * *
200015 CCTTTT-GTCCTCAGAGAGTAGGATGCATTTGTTTCCTTTT-TCCTTTGTCCTCAAAGAGTAGGG
1 CCTTTTAGTCCTCAAAGAGTAGGACGC--CT-TTTCCTTTTCTCCTTTGTCCTCAAACAGTAGGA
200078 CACACTTT-ATTTCCTTTTTT-
63 CACA-TTTCATTTCCTTTTTTC
* * *
200098 CC-TTT-GTCTTCGAAGAGAAGGACGCACTTTT
1 CCTTTTAGTCCTCAAAGAGTAGGACGC-CTTTT
200129 TTTCACTTTG
Statistics
Matches: 98, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
80 3 0.03
81 1 0.01
82 18 0.18
83 20 0.20
84 10 0.10
85 34 0.35
86 12 0.12
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.41
Consensus pattern (83 bp):
CCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCTCCTTTGTCCTCAAACAGTAGGACAC
ATTTCATTTCCTTTTTTC
Found at i:200127 original size:42 final size:41
Alignment explanation
Indices: 199938--200120 Score: 185
Period size: 42 Copynumber: 4.4 Consensus size: 41
199928 GCACCTTTTA
* * *
199938 GTCCTCAAAGAGTAGGACGC--CT-TTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGTAGGACACATTTATTTCCTTTTTTCCTTT
*
199976 GTCCTCAAACAGTAGGACACATTTCATTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGTAGGACACATTT-ATTTCCTT-TTTT-CC-TTT
* ** *
200021 GTCCTCAGAGAGTAGGATGCATTTGTTTCC-TTTTTCCTTT
1 GTCCTCAAAGAGTAGGACACATTTATTTCCTTTTTTCCTTT
*
200061 GTCCTCAAAGAGTAGGGCACACTTTATTTCCTTTTTTCCTTT
1 GTCCTCAAAGAGTAGGACACA-TTTATTTCCTTTTTTCCTTT
* * *
200103 GTCTTCGAAGAGAAGGAC
1 GTCCTCAAAGAGTAGGAC
200121 GCACTTTTTT
Statistics
Matches: 118, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 18 0.15
40 21 0.18
41 10 0.08
42 35 0.30
43 4 0.03
44 7 0.06
45 23 0.19
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (41 bp):
GTCCTCAAAGAGTAGGACACATTTATTTCCTTTTTTCCTTT
Found at i:200367 original size:43 final size:42
Alignment explanation
Indices: 200307--201265 Score: 535
Period size: 43 Copynumber: 22.9 Consensus size: 42
200297 GACACTTTCC
* * * *
200307 TCATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGAACGCACC
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * * **
200349 TCATTTCCTTCTTTTCCTTTAGTCTTCAAAGAGCAAGATGCACT
1 TCATTTCCTT-TTTTCCTTT-GTCCTCAAAGAGTAGGACACACT
*
200393 TCATTTCCTTCATTTCCTTTTTGTCCTCAAAGAGTAGGACACACT
1 TCATTTCCTT-TTTTCC--TTTGTCCTCAAAGAGTAGGACACACT
* * **
200438 TTATTTTC-TTTTTCCTTTGTCCTCAAAGAGTAGGA-TGAC-
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * * * * * ** *
200477 T--TTT-CTTTTTCCCTTAGTCTTCGAAGGGCAGGA-TGACG
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * * * * *
200515 T--TTT-GTTTTCTCTTTTGTCCTCAAAGTGTAAGACACATT
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * * **
200554 TCATTTCTTTATTTTGCCTTTTGTCTTCAAAGAGCATAACACA-T
1 TCATTTCCTT-TTTT-CC-TTTGTCCTCAAAGAGTAGGACACACT
** * *
200598 TTTTTTCCTTTTCTCCTTTGTCCTCAAAGAGTAGGGCACACT
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * * * * * * *
200640 TCTTTTCC--GTTTCCTTTTGTCCTTAACGTGCAGGGCATAC-
1 TCATTTCCTTTTTTCC-TTTGTCCTCAAAGAGTAGGACACACT
* *
200680 TCTATTTCC-TTTTCCCTTTGTCCTCAAAGAGAAGGACACACT
1 TC-ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * *
200722 TAACTTCCTTATTTTCCTTTGTCCTCAAAGAGAAGGACACACT
1 TCATTTCCTT-TTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * *
200765 TAACTTCCTTCTTTTCCTTTGTCCTCAAAGAGAAGGACACACT
1 TCATTTCCTT-TTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* *
200808 TAACTTCCTTCTTTTCCTTTGTCCTCAAAGAGTAGGACACA-T
1 TCATTTCCTT-TTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * *
200850 TCTATTTCCTTATTTTCCCCTTTTGTCCTTAAAGAGCAGGACGCACT
1 TC-ATTTCCTT-TTTT--CC-TTTGTCCTCAAAGAGTAGGACACACT
* *
200897 TCATTTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACACATT
1 TCATTTCCTT-TTTTC-C-TTTGTCCTCAAAGAGTAGGACACACT
* * * * * * *
200942 TTATTCTCC-TTTTTCTTTTGTCCTTAAAAAGAAGGACGCATT
1 TCATT-TCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * *
200984 TCA-TTCTCTTTTTTCCTTTATCCTCAAAAAGTAAGACACACT
1 TCATTTC-CTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
*
201026 TCATTTCCTTTTTTCCTTTGTCCTCGAAA-AGCAGG--ACA--
1 TCATTTCCTTTTTTCCTTTGTCCTC-AAAGAGTAGGACACACT
* * * **
201064 T-A-CT-C-TTTTTCACTTTGACCTC-AAGAAGCAGGACACTTT
1 TCATTTCCTTTTTTC-CTTTGTCCTCAAAG-AGTAGGACACACT
* * * * * * *
201103 TCTTTTTCTTTTTTCCTTTGTCCTCAAGGAGCAAGACCCATT
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * **
201145 TCA-TT-CTCTTTTCCACTTCGTCCTC-AAGAAGTAGGACACTTT
1 TCATTTCCT-TTTTTC-CTTTGTCCTCAAAG-AGTAGGACACACT
* * * * * * * *
201187 TCTTTTTCTTTCTTCCTTTGTCCTCAAGGAGCATGACCCATT
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
* * *
201229 TCA-TT-CTCTTTTCCTTTGTCCTCAAAAAGTAAGACAC
1 TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACAC
201266 CCCTTCCATT
Statistics
Matches: 729, Mismatches: 139, Indels: 100
0.75 0.14 0.10
Matches are distributed among these distances:
33 2 0.00
34 6 0.01
35 16 0.02
36 2 0.00
37 31 0.04
38 24 0.03
39 4 0.01
40 40 0.05
41 105 0.14
42 165 0.23
43 166 0.23
44 51 0.07
45 75 0.10
46 39 0.05
47 3 0.00
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (42 bp):
TCATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACT
Found at i:201010 original size:175 final size:173
Alignment explanation
Indices: 200689--201063 Score: 435
Period size: 175 Copynumber: 2.2 Consensus size: 173
200679 CTCTATTTCC
200689 TTTT-CCCTTTGTCCTCAAAGAGAAGGACACACTTAACTTCCTTATTTTCCTTTGTCCTCAAAGA
1 TTTTCCCCTTTGTCCTCAAAGAGAAGGACACACTTAACTTCCTTATTTTCCTTTGTCCTCAAAGA
* *
200753 GAAGGACACACTTAACTTCCTTCTTTTCCTTTGTCCTCAAAGAGAAGGACACACTTAACTTCCTT
66 GAAGGACACACTTAACTTCCCTCTTTTCCTTTGTCCTCAAAAAGAAGGACACACTTAACTTCCTT
* * *
200818 CTTTTCCTTTGTCCTCAAAGAGTAGGACACA-TTCTATTTCCTT
131 CTTTTCCTTTATCCTCAAAAAGTAAGACACACTTC-ATTTCCTT
* * * * * *
200861 ATTTTCCCCTTTTGTCCTTAAAGAGCAGGACGCACTTCATTTCCTTCTTTTCTCTTTTGTCCTCA
1 -TTTTCCCC-TTTGTCCTCAAAGAGAAGGACACACTTAACTTCCTTATTTTC-C-TTTGTCCTCA
* * * * * * * *
200926 AAGAGCAGGACACATTTTA-TTCTCCT-TTTTCTTTTGTCCTTAAAAAGAAGGACGCATTTCA-T
62 AAGAGAAGGACACACTTAACTTC-CCTCTTTTCCTTTGTCCTCAAAAAGAAGGACACACTTAACT
200988 TCTCTT-TTTTCCTTTATCCTCAAAAAGTAAGACACACTTCATTTCCTT
126 TC-CTTCTTTTCCTTTATCCTCAAAAAGTAAGACACACTTCATTTCCTT
*
201036 TTTT--CCTTTGTCCTCGAAA-AGCAGGACA
1 TTTTCCCCTTTGTCCTC-AAAGAGAAGGACA
201064 TACTCTTTTT
Statistics
Matches: 173, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
171 16 0.09
172 5 0.03
173 4 0.02
174 7 0.04
175 74 0.43
176 39 0.23
177 28 0.16
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (173 bp):
TTTTCCCCTTTGTCCTCAAAGAGAAGGACACACTTAACTTCCTTATTTTCCTTTGTCCTCAAAGA
GAAGGACACACTTAACTTCCCTCTTTTCCTTTGTCCTCAAAAAGAAGGACACACTTAACTTCCTT
CTTTTCCTTTATCCTCAAAAAGTAAGACACACTTCATTTCCTT
Found at i:201046 original size:84 final size:84
Alignment explanation
Indices: 200307--201265 Score: 475
Period size: 84 Copynumber: 11.5 Consensus size: 84
200297 GACACTTTCC
* * * * **
200307 TCATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGAACGCACCTCATTTCCTTCTTTTCCTTTAGT
1 TCATTCTCTTTTTTCCTTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTT-TTTTCCTTT-GT
* **
200372 CTTCAAAGAGCAA-GATGCACT
64 CCTCAAAGAG-AAGGACACACT
* * *
200393 TCATT-TCCTTCATTTCCTTTTTGTCCTCAAAGAGTAGGACACACTTT-ATTTTC-TTTTTCCTT
1 TCATTCT-CTT-TTTTCC--TTTGTCCTCAAAAAGTAGGACACA-TTTCATTTCCTTTTTTCCTT
* **
200455 TGTCCTCAAAGAGTAGGA-TGAC-
61 TGTCCTCAAAGAGAAGGACACACT
* * * * * ** * ** * *
200477 T--TT-TCTTTTTCCCTTAGTCTTC--GAAG--GG-CAGGATGACGTTTTGTTTTCTCTTTTGTC
1 TCATTCTCTTTTTTCCTTTGTCCTCAAAAAGTAGGACA-CATTTCATTTCCTTTTTTCCTTTGTC
* *
200534 CTCAAAGTGTAA-GACACATT
65 CTCAAAGAG-AAGGACACACT
* * * ** * *
200554 TCATT-TCTTTATTTTGCCTTTTGTCTTCAAAGAGCATAACACATTT-TTTTCCTTTTCTCCTTT
1 TCATTCTC-TT-TTTT-CC-TTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTTTTTTCCTTT
* *
200617 GTCCTCAAAGAGTAGGGCACACT
62 GTCCTCAAAGAGAAGGACACACT
* ** * *** * * * * *
200640 TC-TTTTC-CGTTTCCTTTTGTCCTTAACGTGCAGGGCATA-CTCTATTTCC-TTTTCCCTTTGT
1 TCATTCTCTTTTTTCC-TTTGTCCTCAAAAAGTAGGACACATTTC-ATTTCCTTTTTTCCTTTGT
200701 CCTCAAAGAGAAGGACACACT
64 CCTCAAAGAGAAGGACACACT
* * * * * *
200722 TAACTTC-CTTATTTTCCTTTGTCCTCAAAGAGAAGGACACACTTAACTTCCTTCTTTTCCTTTG
1 TCA-TTCTCTT-TTTTCCTTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTT-TTTTCCTTTG
200786 TCCTCAAAGAGAAGGACACACT
63 TCCTCAAAGAGAAGGACACACT
* *
200808 TAACTTC-CTTCTTTTCCTTTGTCCTCAAAGAGTAGGACACA-TTCTATTTCCTTATTTTCCCCT
1 TCA-TTCTCTT-TTTTCCTTTGTCCTCAAAAAGTAGGACACATTTC-ATTTCCTT-TTTT--CC-
* * *
200871 TTTGTCCTTAAAGAGCAGGACGCACT
59 TTTGTCCTCAAAGAGAAGGACACACT
* * * *
200897 TCATT-TCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACACATTTTATTCTCC-TTTTTCTTT
1 TCATTCT-CTT-TTTTC-C-TTTGTCCTCAAAAAGTAGGACACATTTCATT-TCCTTTTTTCCTT
* * * *
200960 TGTCCTTAAAAAGAAGGACGCATT
61 TGTCCTCAAAGAGAAGGACACACT
* * *
200984 TCATTCTCTTTTTTCCTTTATCCTCAAAAAGTAAGACACACTTCATTTCCTTTTTTCCTTTGTCC
1 TCATTCTCTTTTTTCCTTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTTTTTTCCTTTGTCC
*
201049 TCGAAA-AGCAGG--ACA--
66 TC-AAAGAGAAGGACACACT
* * * * * *
201064 T-A--CTC-TTTTTCACTTTGACCTCAAGAAGCAGGACACTTTTCTTTTTCTTTTTTCCTTTGTC
1 TCATTCTCTTTTTTC-CTTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTTTTTTCCTTTGTC
* * *
201125 CTCAAGGAGCAA-GACCCATT
65 CTCAAAGAG-AAGGACACACT
* * * * * * *
201145 TCATTCTC-TTTTCCACTTCGTCCTCAAGAAGTAGGACACTTTTCTTTTTCTTTCTTCCTTTGTC
1 TCATTCTCTTTTTTC-CTTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTTTTTTCCTTTGTC
* * * * *
201209 CTCAAGGAGCATGACCCATT
65 CTCAAAGAGAAGGACACACT
*
201229 TCATTCTC--TTTTCCTTTGTCCTCAAAAAGTAAGACAC
1 TCATTCTCTTTTTTCCTTTGTCCTCAAAAAGTAGGACAC
201266 CCCTTCCATT
Statistics
Matches: 693, Mismatches: 122, Indels: 120
0.74 0.13 0.13
Matches are distributed among these distances:
73 3 0.00
74 7 0.01
75 21 0.03
76 12 0.02
77 50 0.07
78 8 0.01
79 7 0.01
80 7 0.01
81 8 0.01
82 78 0.11
83 25 0.04
84 149 0.22
85 22 0.03
86 141 0.20
87 47 0.07
88 9 0.01
89 61 0.09
90 6 0.01
91 27 0.04
92 5 0.01
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (84 bp):
TCATTCTCTTTTTTCCTTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTTTTTTCCTTTGTCC
TCAAAGAGAAGGACACACT
Found at i:201128 original size:42 final size:42
Alignment explanation
Indices: 201069--201253 Score: 178
Period size: 42 Copynumber: 4.4 Consensus size: 42
201059 GGACATACTC
* *
201069 TTTTTCACTTTGACCTCAAGAAGCAGGACACTTTTCTTTTTCT
1 TTTTTC-CTTTGTCCTCAAGAAGCAGGACACATTTCTTTTTCT
* * * * *
201112 TTTTTCCTTTGTCCTCAAGGAGCAAGACCCATTTCATTCTC-
1 TTTTTCCTTTGTCCTCAAGAAGCAGGACACATTTCTTTTTCT
* * * *
201153 TTTTCCACTTCGTCCTCAAGAAGTAGGACACTTTTCTTTTTCT
1 TTTTTC-CTTTGTCCTCAAGAAGCAGGACACATTTCTTTTTCT
* * * * *
201196 TTCTTCCTTTGTCCTCAAGGAGCATGACCCATTTC--ATTCT
1 TTTTTCCTTTGTCCTCAAGAAGCAGGACACATTTCTTTTTCT
*
201236 CTTTTCCTTTGTCCTCAA
1 TTTTTCCTTTGTCCTCAA
201254 AAAGTAAGAC
Statistics
Matches: 113, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
40 20 0.18
41 5 0.04
42 78 0.69
43 10 0.09
ACGTcount: A:0.18, C:0.28, G:0.11, T:0.43
Consensus pattern (42 bp):
TTTTTCCTTTGTCCTCAAGAAGCAGGACACATTTCTTTTTCT
Found at i:204307 original size:79 final size:77
Alignment explanation
Indices: 204186--204623 Score: 468
Period size: 79 Copynumber: 5.6 Consensus size: 77
204176 ATTCATATTT
* * * * * *
204186 TTATTTTCGAGGGGATACTCTAACCCGGTTTTATTTTCAAAATACCAATTTTTCATAATCGGGGA
1 TTATTTTTGA-GGGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTTCATAATTGGGGA
*
204251 TACTCCAACCGTG
65 TACTCCAACCCTG
* * * * *
204264 TTATGTCTGATGGGATACTCCAACCTTGATTTTATTTCTAAAATACCAATTTTTCATAATTGGGG
1 TTATTTTTGA-GGGATACTCCAACC-CGATTTTATTTCCAAAACACCAATTTTTCATAATTGGGG
204329 ATACTCCAACCCTG
64 ATACTCCAACCCTG
* *
204343 TTATTTTTGAGGGGATACTCCAACCCGAGTTTTATTTTCAAAACACCAA-TTTTCTACAATTGGG
1 TTATTTTTGA-GGGATACTCCAACCCGA-TTTTATTTCCAAAACACCAATTTTTC-ATAATTGGG
* *
204407 GATACTCTAA-CGTCG
63 GATACTCCAACCCT-G
* * *
204422 TTATTTTTGAGAGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAA-TTTTCATAATTGGAG
1 TTATTTTTGAG-GGATACTCCAACCC-GATTTTATTTCCAAAACACCAATTTTTCATAATTGGGG
204486 ATACTCCAACCCTG
64 ATACTCCAACCCTG
* * * * * *
204500 TTATTTTTGAAGGGAAACTCTAACCCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGAGG
1 TTATTTTTG-AGGGATACTCCAA-CCCGATTTTATTTCCAAAACACCAATTTTTCATAATTGGGG
*
204565 ATACTCCAACCCCG
64 ATACTCCAACCCTG
* * * *
204579 TTATCTCTGAGGAGATACTCCAATCCTAGTTTTATTTCCAAAACA
1 TTATTTTTGAGG-GATACTCCAACCCGA-TTTTATTTCCAAAACA
204624 TTGATTTTCC
Statistics
Matches: 306, Mismatches: 42, Indels: 23
0.82 0.11 0.06
Matches are distributed among these distances:
78 92 0.30
79 213 0.70
80 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (77 bp):
TTATTTTTGAGGGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTTCATAATTGGGGAT
ACTCCAACCCTG
Found at i:204543 original size:157 final size:155
Alignment explanation
Indices: 204186--204632 Score: 565
Period size: 157 Copynumber: 2.8 Consensus size: 155
204176 ATTCATATTT
* * * *
204186 TTATTTTCGAGGGGATACTCTAACCCGGTTTTATTTTCAAAATACCAATTTTTCATAATCGGGGA
1 TTATTTTTGAGGGGATACTCTAACCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGGA
* * * * * *
204251 TACTCCAACCGT-GTTATGTCTGATGGGATACTCCAACCTTGATTTTATTTCTAAAATACCAATT
66 TACTCCAA-CGTCGTTATCTCTGA-GGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAA-T
*
204315 TTTCATAATTGGGGATACTCCAACCCTG
128 TTTCATAATTGGAGATACTCCAACCCTG
* *
204343 TTATTTTTGAGGGGATACTCCAACCCGAGTTTTATTTTCAAAACACCAA-TTTTCTACAATTGGG
1 TTATTTTTGAGGGGATACTCTAACCCGA-TTTTATTTTCAAAACACCAATTTTTC-ACAATCGGG
* * *
204407 GATACTCTAACGTCGTTATTTTTGAGAGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAAT
64 GATACTCCAACGTCGTTATCTCTGAG-GGATACTCCAACCCTGGTTTTATTTCCAAAACACTAAT
204472 TTTCATAATTGGAGATACTCCAACCCTG
128 TTTCATAATTGGAGATACTCCAACCCTG
* * * * *
204500 TTATTTTTGAAGGGAAACTCTAACCCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGAGG
1 TTATTTTTGAGGGGATACTCTAA-CCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGG
** * * * *
204565 ATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAATCCTAGTTTTATTTCCAAAACATTGATT
65 ATACTCCAACGTCGTTATCTCTGAGG-GATACTCCAACCCTGGTTTTATTTCCAAAACACTAATT
204630 TTC
129 TTC
204633 CACCATTGGG
Statistics
Matches: 252, Mismatches: 31, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
156 1 0.00
157 165 0.65
158 86 0.34
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (155 bp):
TTATTTTTGAGGGGATACTCTAACCCGATTTTATTTTCAAAACACCAATTTTTCACAATCGGGGA
TACTCCAACGTCGTTATCTCTGAGGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTT
CATAATTGGAGATACTCCAACCCTG
Found at i:204569 original size:236 final size:236
Alignment explanation
Indices: 204186--204647 Score: 602
Period size: 236 Copynumber: 2.0 Consensus size: 236
204176 ATTCATATTT
* * * * *
204186 TTATTTTCGAGGGGATACTCTAACCCGGTTTTATTTTCAAAATACCAATTTTTCATAATCGGGGA
1 TTATTTTCGAGAGGATACTCCAACCCGGTTTTATTTCCAAAACACCAATTTTTCATAATCGGAGA
* * * ** * *
204251 TACTCCAACCGTGTTATGTCTGATGGGATACTCCAACCTTGATTTTATTTCTAAAATACCAATTT
66 TACTCCAACCCTGTTATGTCTGAAGGGAAACTCCAACCCCGATTTTATTTCCAAAACACCAATTT
* * * * * * * *
204316 TTCATAATTGGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCGAGTTTTATTTT
131 TTCACAATCGAGGATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAACCCGAGTTTTATTTC
*
204381 CAAAACACCAATTTTCTACAATTGGGGATACTCTAACGTCG
196 CAAAACACCAATTTTCCACAATTGGGGATACTCTAACGTCG
* * *
204422 TTATTTTTGAGAGGATACTCCAACCCTGGTTTTATTTCCAAAACACTAA-TTTTCATAATTGGAG
1 TTATTTTCGAGAGGATACTCCAACCC-GGTTTTATTTCCAAAACACCAATTTTTCATAATCGGAG
* * * *
204486 ATACTCCAACCCTGTTATTTTTGAAGGGAAACTCTAACCCCGATTTTATTTCCAAAACACTAATT
65 ATACTCCAACCCTGTTATGTCTGAAGGGAAACTCCAACCCCGATTTTATTTCCAAAACACCAATT
* *
204551 TTTCACAATCGAGGATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAATCCTAGTTTTATTT
130 TTTCACAATCGAGGATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAACCCGAGTTTTATTT
*** *
204616 CCAAAACATTGATTTTCCACCATTGGGGATAC
195 CCAAAACACCAATTTTCCACAATTGGGGATAC
204648 CTTAACCCCG
Statistics
Matches: 191, Mismatches: 34, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
236 172 0.90
237 19 0.10
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (236 bp):
TTATTTTCGAGAGGATACTCCAACCCGGTTTTATTTCCAAAACACCAATTTTTCATAATCGGAGA
TACTCCAACCCTGTTATGTCTGAAGGGAAACTCCAACCCCGATTTTATTTCCAAAACACCAATTT
TTCACAATCGAGGATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAACCCGAGTTTTATTTC
CAAAACACCAATTTTCCACAATTGGGGATACTCTAACGTCG
Found at i:204700 original size:236 final size:236
Alignment explanation
Indices: 204198--204700 Score: 580
Period size: 236 Copynumber: 2.1 Consensus size: 236
204188 ATTTTCGAGG
* * * * * * *
204198 GGATACTCTAACCC-GGTTTTATTTTCAAAATACCAATTTTTCATAATCGGGGATACTCCAACCG
1 GGATACTCCAACCCTGGTTTTATCTCCAAAACACTAA-TTTTCATAATCGGAGATACTCCAACCC
* * ** * * * * *
204262 TGTTATGTCTGATGGGATACTCCAACCTTGATTTTATTTCTAAAATACCAATTTTTCATAATTGG
65 TGTTATGTCTGAAGGGAAACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGA
* * * * *
204327 GGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCGAGTTTTATTTTCAAAACACCAA
130 GGATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAACCCGAGTTTTATTTCCAAAACACCAA
* ** * *
204392 TTTTCTACAATTGGGGATACTCTAACGTCGTTATTTTTGAGA
195 TTTTCCACAATTGGGGATACTCTAACCCCGTTACTTCTGAGA
* *
204434 GGATACTCCAACCCTGGTTTTATTTCCAAAACACTAATTTTCATAATTGGAGATACTCCAACCCT
1 GGATACTCCAACCCTGGTTTTATCTCCAAAACACTAATTTTCATAATCGGAGATACTCCAACCCT
* * * *
204499 GTTATTTTTGAAGGGAAACTCTAACCCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGAG
66 GTTATGTCTGAAGGGAAACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAG
* * ***
204564 GATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAATCCTAGTTTTATTTCCAAAACATTGAT
131 GATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAACCCGAGTTTTATTTCCAAAACACCAAT
*
204629 TTTCCACCATTGGGGATAC-CTTAACCCCGTTACTTCTGA-A
196 TTTCCACAATTGGGGATACTC-TAACCCCGTTACTTCTGAGA
* * * *
204669 GGGGTACTTCGACCCTGTTTTTATCTCCAAAA
1 -GGATACTCCAACCCTGGTTTTATCTCCAAAA
204701 TATTAAATTT
Statistics
Matches: 223, Mismatches: 41, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
235 2 0.01
236 202 0.91
237 19 0.09
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (236 bp):
GGATACTCCAACCCTGGTTTTATCTCCAAAACACTAATTTTCATAATCGGAGATACTCCAACCCT
GTTATGTCTGAAGGGAAACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGAG
GATACTCCAACCCCGTTATCTCTGAGGAGATACTCCAACCCGAGTTTTATTTCCAAAACACCAAT
TTTCCACAATTGGGGATACTCTAACCCCGTTACTTCTGAGA
Found at i:205895 original size:20 final size:20
Alignment explanation
Indices: 205869--205946 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
205859 CATTGGGCTA
205869 ATTGTATCGATACAATTCT-G
1 ATTGTATCGATAC-ATTCTAG
*
205889 GTTGTATCGATACATTCTAG
1 ATTGTATCGATACATTCTAG
* *
205909 AATGTATCGATATATTCCTATG
1 ATTGTATCGATACATT-CTA-G
205931 -TGTGTATCGATACATT
1 AT-TGTATCGATACATT
205947 TGAAGGGTAG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 5 0.10
20 26 0.54
21 3 0.06
22 14 0.29
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (20 bp):
ATTGTATCGATACATTCTAG
Found at i:206037 original size:33 final size:33
Alignment explanation
Indices: 205992--206057 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
205982 CATTCACATG
205992 ATGTATCAATACATTGCAAGT-TGTATTGATACA
1 ATGTATCAATACATTGCAA-TATGTATTGATACA
*
206025 ATGTATCGATACATTGCAATATGTATTGATACA
1 ATGTATCAATACATTGCAATATGTATTGATACA
206058 TTTTCATGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (33 bp):
ATGTATCAATACATTGCAATATGTATTGATACA
Found at i:211258 original size:165 final size:165
Alignment explanation
Indices: 211064--211412 Score: 381
Period size: 165 Copynumber: 2.1 Consensus size: 165
211054 AATTTTTTTA
* * * * ** *
211064 TTTACAATTTATCAAATATCATAATTTAATTCAT-ATTAAATTATTTTTTTTAAAATTCCTTT-T
1 TTTAAAATTAATCAAATATCATAATTTAATT-ATCATTAAATCA-GTTTTGAAAAATTCATTTAT
* * * * *
211127 TTTCA-TGAGTTTTTTATTTCTTCCTTGAAATCTCAT-A-TTTT-CAAAATACAGAGTTTGCTAC
64 TTT-AGTAAGTTTTTCATTTCTTCCTT-AAAACCCATAATTTTTGAAAAATA-A-AGTTTGCTAC
* *
211188 TCCATAAATATTTT-TGGGAGGATTTTTCTC-GATTTAAAATT
125 TCCACAAATATTTTCAGGGA-GATTTTTCTCAG-TTTAAAATT
*
211229 TTTAAAATTAATCAAATATCATTATTTAATTATCATTAAATCAGTTTTGAAAAATTCATTTATTT
1 TTTAAAATTAATCAAATATCATAATTTAATTATCATTAAATCAGTTTTGAAAAATTCATTTATTT
* * * *
211294 TAGTAAGTTTTTCATTTTTTCGTTAAAACCCTTAATTTTTGAAAAATAAAGTTTTCTACTCCACA
66 TAGTAAGTTTTTCATTTCTTCCTTAAAACCCATAATTTTTGAAAAATAAAGTTTGCTACTCCACA
*
211359 AATGTTTTCAGGGAGATTTTTCTCAGTTTAAAATT
131 AATATTTTCAGGGAGATTTTTCTCAGTTTAAAATT
*
211394 TTTAAAATTCATCAAATAT
1 TTTAAAATTAATCAAATAT
211413 TGTTTTTCAT
Statistics
Matches: 155, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
164 23 0.15
165 116 0.75
166 10 0.06
167 6 0.04
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (165 bp):
TTTAAAATTAATCAAATATCATAATTTAATTATCATTAAATCAGTTTTGAAAAATTCATTTATTT
TAGTAAGTTTTTCATTTCTTCCTTAAAACCCATAATTTTTGAAAAATAAAGTTTGCTACTCCACA
AATATTTTCAGGGAGATTTTTCTCAGTTTAAAATT
Found at i:211260 original size:154 final size:152
Alignment explanation
Indices: 210956--211261 Score: 318
Period size: 154 Copynumber: 2.0 Consensus size: 152
210946 ATTAAATCAA
* * * *
210956 TTTTTAAAAATTCATTTATTTTTATGAGTTTTTCATTTTTTTTAAATCTCCTTGTTTTCAAAATA
1 TTTTTAAAAATTCATTTATTTTCATGAGTTTTTCATTTTTTTGAAATCTCCATATTTTCAAAATA
* *
211021 CAAAATTTGATACTCCATAAATGTTTTCGAAGGAATTTTTTTATTTACAATTTATCAAATATCAT
66 CAAAATTTGATACTCCATAAATGTTTTCGAAGGAATTTTTTGATTTAAAATTTATCAAATAT-AT
**
211086 AATTTAATTCATATTAAATTATT
130 AATCAAATTCATATTAAATTATT
* * *
211109 TTTTTTAAAATTCCTTT-TTTTCATGAGTTTTTTATTTCTTCCTTGAAATCT-CATATTTTCAAA
1 TTTTTAAAAATTCATTTATTTTCATGAGTTTTTCATTT-TT--TTGAAATCTCCATATTTTCAAA
* * * * * * *
211172 ATACAGAGTTTGCTACTCCATAAATATTTTTGGGAGG-ATTTTTCTCGATTTAAAATTT-TTAAA
63 ATACAAAATTTGATACTCCATAAAT-GTTTTCGAAGGAATTTTT-T-GATTTAAAATTTATCAAA
*
211235 -AT-TAATCAAATATCATTATTTAATTAT
125 TATATAATCAAAT-TCA-TATTAAATTAT
211262 CATTAAATCA
Statistics
Matches: 126, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
152 25 0.20
153 20 0.16
154 50 0.40
155 21 0.17
156 10 0.08
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (152 bp):
TTTTTAAAAATTCATTTATTTTCATGAGTTTTTCATTTTTTTGAAATCTCCATATTTTCAAAATA
CAAAATTTGATACTCCATAAATGTTTTCGAAGGAATTTTTTGATTTAAAATTTATCAAATATATA
ATCAAATTCATATTAAATTATT
Found at i:211443 original size:135 final size:133
Alignment explanation
Indices: 211283--211549 Score: 344
Period size: 135 Copynumber: 2.0 Consensus size: 133
211273 TTTTGAAAAA
**
211283 TTCATTTATTTTAGTAAGTTTTTCATTTTTTCGTTAAAA-C-CCTTAATTTTTGAAAAATAAAGT
1 TTCATTTATTTTAGTAAGTTTTTCATTTTTTCGTTAAAATCTCC-T-ATTCCTGAAAAAT-AAGT
* *
211346 TTTCTACTCCACAAATG-TTTTCAGGGAGATTTTTCTCAGTTTAAAATTTTTAAAATTCATCAAA
63 TTTCTACTCCACAAATGTTTTTAAGGGA-A-TTTTCTCAGTTTAAAATTTTTAAAATTCAGCAAA
211410 TATTGTTT
126 TATTGTTT
* * * *
211418 TTCATTTATTTTCA-TGAGTTTTTCATTTTTTCTTTAAAATTCTCCTATTCCTGAAAACTTAGTT
1 TTCATTTATTTT-AGTAAGTTTTTCATTTTTTCGTTAAAA-TCTCCTATTCCTGAAAAATAAGTT
* * *
211482 TTCTATTCCATAAATGTTTTTAAGGGAATTTTCTCGGTTTAAAATTTTTAAAATTCAGCAAATAT
64 TTCTACTCCACAAATGTTTTTAAGGGAATTTTCTCAGTTTAAAATTTTTAAAATTCAGCAAATAT
211547 TGT
129 TGT
211550 CATTAAATTC
Statistics
Matches: 116, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
134 38 0.33
135 54 0.47
136 20 0.17
137 2 0.02
138 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (133 bp):
TTCATTTATTTTAGTAAGTTTTTCATTTTTTCGTTAAAATCTCCTATTCCTGAAAAATAAGTTTT
CTACTCCACAAATGTTTTTAAGGGAATTTTCTCAGTTTAAAATTTTTAAAATTCAGCAAATATTG
TTT
Found at i:213815 original size:150 final size:150
Alignment explanation
Indices: 213630--213903 Score: 485
Period size: 150 Copynumber: 1.8 Consensus size: 150
213620 CATCTATAAC
*
213630 CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTTAAGGATATTTTA
1 CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTCAAGGATATTTTA
*
213695 GCTTTTTCCCCAAAACCTAGTCCTATAAAACTACCGAGTCCACTTCTACGTCGAAGGTATGAATT
66 GCTTTTTCCCCAAAACCTAGTCCGATAAAACTACCGAGTCCACTTCTACGTCGAAGGTATGAATT
213760 AAGATTGGGTTCATTTTTAT
131 AAGATTGGGTTCATTTTTAT
* * *
213780 CCTTTTCAAGTCCCTTAGGATCACCAGGCATTTCTAAGTTGATGGTAAACCTCAGGGATATTTTA
1 CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTCAAGGATATTTTA
* *
213845 GCTTTTTCCCCAAAACCTAGTCCGATAAAACTATCGAGTCCGCTTCTACGTCGAAGGTA
66 GCTTTTTCCCCAAAACCTAGTCCGATAAAACTACCGAGTCCACTTCTACGTCGAAGGTA
213904 CAATGTAGGA
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
150 117 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (150 bp):
CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTCAAGGATATTTTA
GCTTTTTCCCCAAAACCTAGTCCGATAAAACTACCGAGTCCACTTCTACGTCGAAGGTATGAATT
AAGATTGGGTTCATTTTTAT
Found at i:213927 original size:150 final size:150
Alignment explanation
Indices: 213630--213950 Score: 484
Period size: 150 Copynumber: 2.1 Consensus size: 150
213620 CATCTATAAC
*
213630 CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTTAAGGATATTTTA
1 CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTCAAGGATATTTTA
* *
213695 GCTTTTTCCCCAAAACCTAGTCCTATAAAACTACCGAGTCCACTTCTACGTCGAAGGTATGAATT
66 GCTTTTTCCCCAAAACCTAGTCCGATAAAACTACCGAGTCCACTTCTACGTCGAAGGTATCAATT
* *
213760 AAGATTGGGTTCATTTTTAT
131 AAGAGTAGGTTCATTTTTAT
* * *
213780 CCTTTTCAAGTCCCTTAGGATCACCAGGCATTTCTAAGTTGATGGTAAACCTCAGGGATATTTTA
1 CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTCAAGGATATTTTA
* *
213845 GCTTTTTCCCCAAAACCTAGTCCGATAAAACTATCGAGTCCGCTTCTACGTCGAAGGTA-CAATG
66 GCTTTTTCCCCAAAACCTAGTCCGATAAAACTACCGAGTCCACTTCTACGTCGAAGGTATCAAT-
* **
213909 TAGGAGTAGGTTTGTTTTTAT
130 TAAGAGTAGGTTCATTTTTAT
* *
213930 -CTTTTTAAGTCCTTTAGGATC
1 CCTTTTCAAGTCCCTTAGGATC
213951 TCTGAGAACT
Statistics
Matches: 155, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
149 22 0.14
150 133 0.86
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (150 bp):
CCTTTTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTCAAGGATATTTTA
GCTTTTTCCCCAAAACCTAGTCCGATAAAACTACCGAGTCCACTTCTACGTCGAAGGTATCAATT
AAGAGTAGGTTCATTTTTAT
Found at i:222718 original size:80 final size:78
Alignment explanation
Indices: 222616--222833 Score: 278
Period size: 80 Copynumber: 2.7 Consensus size: 78
222606 AATCGAGTTG
* *
222616 GAGTATCTCCAAAGATGAAAAATTCAATGTTTTCGAAGTAAAAATGGGGTTGGAGTATCCCCTCA
1 GAGTATC-CCAAAGATGAAAAATTCAAAGTTTT-GAAGTAAAAACGGGGTTGGAGTATCCCCTCA
222681 GAGATGGTGGGGTTA
64 GAGATGGTGGGGTTA
* * * ** *
222696 GAGTATCCCCAAAAATGGAAAATTCAACA-TTTTGAAAATAAAAACGGGGTTAAAGTATCCCCTT
1 GAGTAT-CCCAAAGATGAAAAATTCAA-AGTTTTG-AAGTAAAAACGGGGTTGGAGTATCCCCTC
222760 AGAGATGGTGGGGTTA
63 AGAGATGGTGGGGTTA
* *
222776 GAGTAT-CCAGAGATGAAAAATTCAAAGTTTTGGAAGTAAAAACGGGGATGGAGTATCC
1 GAGTATCCCAAAGATGAAAAATTCAAAGTTTT-GAAGTAAAAACGGGGTTGGAGTATCC
222834 TAGAGTTGGA
Statistics
Matches: 118, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 41 0.35
79 2 0.02
80 73 0.62
81 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (78 bp):
GAGTATCCCAAAGATGAAAAATTCAAAGTTTTGAAGTAAAAACGGGGTTGGAGTATCCCCTCAGA
GATGGTGGGGTTA
Found at i:222924 original size:129 final size:128
Alignment explanation
Indices: 222711--223041 Score: 346
Period size: 129 Copynumber: 2.6 Consensus size: 128
222701 TCCCCAAAAA
* * * *
222711 TGGAAAATTCAACATTTTGAAAATAAAAACGGGGTTAAAGTATCCCCTTAGAGATGGTGGGGTTA
1 TGGAAAATTCAACATTTTGAAAATAAAAACGAGGTCAAAGTATCCCCTTAGAAAAGGTGGGGTTA
*
222776 GAGTATCCAGAGATGAAAAATTCAAAGTTTTGGAAGTAAAAACGGGGATGGAGTATCCTAGAGT
66 GAGTATCCAGAGATGAAAAATTCAAAG-TTTGGAAGTAAAAACAGGGATGGAGTATCCTAGAGT
** * *
222840 TGGAAAATTCAATGTTTTGGAAGT-AAAA-GAGGTCAAAGTATCCCCTTAGAAAAGGTGGGGTTA
1 TGGAAAATTCAACATTTTGAAAATAAAAACGAGGTCAAAGTATCCCCTTAGAAAAGGTGGGGTTA
* * * * * *
222903 GAGTATCTATAGAGATGAAAAATTCGATGTTTGGAAGTAAAAACAGGGTTGGAGTATCTCCAAAG
66 GAGTATC--CAGAGATGAAAAATTCAAAGTTTGGAAGTAAAAACAGGGATGGAGTATC-CTAGAG
*
222968 A
128 T
** * * * *** * *
222969 T-GAAAATTTTGACATTTTGGAAGTAAAAAAGAGGTTGGAGTAT-CCCTTCAGAGATGGTGGGGT
1 TGGAAAA-TTCAACATTTTGAAAATAAAAACGAGGTCAAAGTATCCCCTT-AGAAAAGGTGGGGT
223032 TAGAGTATCC
64 TAGAGTATCC
223042 TCGGAAATAA
Statistics
Matches: 169, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
127 38 0.22
128 36 0.21
129 55 0.33
130 9 0.05
131 31 0.18
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27
Consensus pattern (128 bp):
TGGAAAATTCAACATTTTGAAAATAAAAACGAGGTCAAAGTATCCCCTTAGAAAAGGTGGGGTTA
GAGTATCCAGAGATGAAAAATTCAAAGTTTGGAAGTAAAAACAGGGATGGAGTATCCTAGAGT
Found at i:222973 original size:51 final size:50
Alignment explanation
Indices: 222897--223012 Score: 135
Period size: 51 Copynumber: 2.3 Consensus size: 50
222887 AGAAAAGGTG
* * *
222897 GGGTTAGAGTATCTATAGAGATGAAAAATTCG-ATGTTTGGAAGTAAAAACA
1 GGGTTGGAGTATCTACAAAGATGAAAAATTCGAAT-TTTGGAAGTAAAAA-A
* * *
222948 GGGTTGGAGTATCTCCAAAGATGAAAATTTTGACATTTTGGAAGTAAAAAA
1 GGGTTGGAGTATCTACAAAGATGAAAAATTCGA-ATTTTGGAAGTAAAAAA
222999 GAGGTTGGAGTATC
1 G-GGTTGGAGTATC
223013 CCTTCAGAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 28 0.50
52 26 0.46
53 2 0.04
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (50 bp):
GGGTTGGAGTATCTACAAAGATGAAAAATTCGAATTTTGGAAGTAAAAAA
Found at i:226166 original size:53 final size:53
Alignment explanation
Indices: 226102--226238 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
226092 CTACTACCAA
226102 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
226155 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
*
226208 TATATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
226239 TATGCAATCT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:226271 original size:20 final size:20
Alignment explanation
Indices: 226226--226279 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
226216 TACATATTTG
*
226226 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATGAAA
* *
226246 TCTGTATCGATAC-ATTTAAA
1 TGTGTATCGATACTA-TGAAA
226266 TGTGTATCGATACT
1 TGTGTATCGATACT
226280 TTTCATGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (20 bp):
TGTGTATCGATACTATGAAA
Found at i:237813 original size:13 final size:13
Alignment explanation
Indices: 237795--237819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
237785 CAATTTATCA
237795 TGTATCGATACAT
1 TGTATCGATACAT
237808 TGTATCGATACA
1 TGTATCGATACA
237820 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:239976 original size:20 final size:19
Alignment explanation
Indices: 239951--240006 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
239941 CTGCTAGTTT
* *
239951 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGA-A
239971 CATGTATCGATA-AAGTGAA
1 CATGTATCGATACAA-TGAA
239990 CATGTATCGATACAATG
1 CATGTATCGATACAATG
240007 TATCGATACA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:240009 original size:13 final size:13
Alignment explanation
Indices: 239991--240017 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
239981 TAAAGTGAAC
239991 ATGTATCGATACA
1 ATGTATCGATACA
240004 ATGTATCGATACA
1 ATGTATCGATACA
240017 A
1 A
240018 AGCATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:242058 original size:20 final size:22
Alignment explanation
Indices: 242016--242058 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
242006 GCAATGGGTG
*
242016 TGGGAGTTGCCCGGTTGCAACC
1 TGGGAGTTGCCCGATTGCAACC
*
242038 TGGGAG-TG-CCGATTGCGACC
1 TGGGAGTTGCCCGATTGCAACC
242058 T
1 T
242059 AGAAGTGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 2 0.11
22 6 0.32
ACGTcount: A:0.14, C:0.26, G:0.37, T:0.23
Consensus pattern (22 bp):
TGGGAGTTGCCCGATTGCAACC
Found at i:242369 original size:22 final size:21
Alignment explanation
Indices: 242334--242383 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
242324 CTTGTTGATG
*
242334 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
242354 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
242375 AATTTGAAG
1 ATTTTGAAG
242384 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:242380 original size:21 final size:22
Alignment explanation
Indices: 242341--242383 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
242331 ATGATTTTGA
* *
242341 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
242363 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
242384 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:247310 original size:12 final size:12
Alignment explanation
Indices: 247293--247320 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
247283 TCTCTCCTCA
247293 AAATTAAGGAAG
1 AAATTAAGGAAG
247305 AAATTAAGGAAG
1 AAATTAAGGAAG
247317 AAAT
1 AAAT
247321 GCTTGGCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.21, T:0.18
Consensus pattern (12 bp):
AAATTAAGGAAG
Found at i:247905 original size:13 final size:13
Alignment explanation
Indices: 247889--247913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
247879 CAATTCATCG
247889 TGTATCGATACAT
1 TGTATCGATACAT
247902 TGTATCGATACA
1 TGTATCGATACA
247914 ATGCGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:247988 original size:20 final size:20
Alignment explanation
Indices: 247963--248018 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
247953 CTACTAGTTT
**
247963 CATGTATCGATACAATTGTG
1 CATGTATCGATACAATTGAA
*
247983 CATGTATCGATAC-AGTGAA
1 CATGTATCGATACAATTGAA
248002 CATGTATCGATACAATT
1 CATGTATCGATACAATT
248019 TATCGATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:249106 original size:20 final size:21
Alignment explanation
Indices: 249070--249108 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
249060 TTGGACATGT
249070 TAAAATGCATGGAACATGGCA
1 TAAAATGCATGGAACATGGCA
249091 TAAAATGCAT-GAACATGG
1 TAAAATGCATGGAACATGG
249109 GCTATTAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.21
Consensus pattern (21 bp):
TAAAATGCATGGAACATGGCA
Found at i:250867 original size:79 final size:77
Alignment explanation
Indices: 250689--251328 Score: 511
Period size: 79 Copynumber: 8.1 Consensus size: 77
250679 TATTTTGGAG
* * * * *
250689 ATAAGAACGGGGTTGGAGTATCCTCTC-GAAAATAATGGGGTTAGAGTATCCCTGATGGTG-GAA
1 ATAA-AACAGGGTTGGAGTATCCCCTCAG-AAATAATGAGGTTAGAGTATCCC-GATTGTGAAAA
*
250752 ATCGATGTTTTGGAA
63 ATCGATGTTTTAGAA
* * * *
250767 ATAAAACTGAGGTTGAAGTATCCCCTCAAAAATAATGAGGTTAGAGTATCATCGATTGTGAAAAA
1 ATAAAACAG-GGTTGGAGTATCCCCTCAGAAATAATGAGGTTAGAGTATC-CCGATTGTGAAAAA
* * *
250832 TTGGTGTTTTGGAA
64 TCGATGTTTTAGAA
* * * * * *
250846 ATAAAATCAGGGTTGGAGTATCCTCTCAGAAATAATGTGGTTGGAGTATCTTCGATGGTGGAAAA
1 ATAAAA-CAGGGTTGGAGTATCCCCTCAGAAATAATGAGGTTAGAGTATC-CCGATTGTGAAAAA
250911 TCGATGTTTTAGAA
64 TCGATGTTTTAGAA
* *
250925 ATAAAATC-GAGGTTGGAGTATCCCCTCAGAAATAATAAGGTTGGAGTATCCCTGATTGTGAACA
1 ATAAAA-CAG-GGTTGGAGTATCCCCTCAGAAATAATGAGGTTAGAGTATCCC-GATTGTGAA-A
* *
250989 AATCGGTGTTTTGGAA
62 AATCGATGTTTTAGAA
* * ** * * ** *
251005 ATAAAACTAGGGTTAGAGTATCCCCTCAAAAATAGCGGGGTTGGAGTATCTTTGA-TGATGGAAA
1 ATAAAAC-AGGGTTGGAGTATCCCCTCAGAAATAATGAGGTTAGAGTATC-CCGATTG-TGAAAA
251069 ATCGATGTTTTAGAA
63 ATCGATGTTTTAGAA
* * * * *
251084 ATAAAACCAGGGTTTGAGTATCTCCTCGGAAATAA-CAGGGTTAGAGCATCCCCGATTGTGAAAA
1 ATAAAA-CAGGGTTGGAGTATCCCCTCAGAAATAATGA-GGTTAGAGTAT-CCCGATTGTG-AAA
*
251148 CAATCGGTGTTTTAGAA
62 -AATCGATGTTTTAGAA
* * * *
251165 ATAAAACTGGGGTTGGAGTATCCCCTTAGAAATAACGAGGTT-GAAGTATCCCTAATTGTGAAAA
1 ATAAAAC-AGGGTTGGAGTATCCCCTCAGAAATAATGAGGTTAG-AGTATCCC-GATTGTGAAAA
*
251229 ATCGATGTTCTAGAA
63 ATCGATGTTTTAGAA
* * * ** * * * *
251244 ATAAAACCGAGGTTAGAGTATCCCTTTGGAAATAA-CAGGGTTGGAGTATCCCCGATGGTGGAAA
1 ATAAAACAG-GGTTGGAGTATCCCCTCAGAAATAATGA-GGTTAGAGTAT-CCCGATTGTGAAAA
* * *
251308 ATTGGTATTTTAGAA
63 ATCGATGTTTTAGAA
251323 ATAAAA
1 ATAAAA
251329 ACATGAACGA
Statistics
Matches: 460, Mismatches: 76, Indels: 51
0.78 0.13 0.09
Matches are distributed among these distances:
77 4 0.01
78 49 0.11
79 268 0.58
80 80 0.17
81 58 0.13
82 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (77 bp):
ATAAAACAGGGTTGGAGTATCCCCTCAGAAATAATGAGGTTAGAGTATCCCGATTGTGAAAAATC
GATGTTTTAGAA
Found at i:251078 original size:159 final size:157
Alignment explanation
Indices: 250681--251328 Score: 692
Period size: 159 Copynumber: 4.1 Consensus size: 157
250671 AAATTTAATA
* * * * * *
250681 TTTTGGAGATAAGAAC-GGGGTTGGAGTATCCTCTCGAAAATAATGGGGTTAGAGTATCCCTGAT
1 TTTTGGAAATAA-AACTAGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGAT
* * * **
250745 GGTGG-AAATCGATGTTTTGGAAATAAAACTGAGGTTGAAGTATCCCCTCAAAAATAATGAGGTT
65 GGTGGAAAATCGATGTTTTAGAAATAAAAC-GAGGTTGGAGTATCCCCTCAGAAATAACAAGGTT
** *
250809 AGAGTATCATCGATTGTGAAAAATTGGTG
129 AGAGTATCCCCGATTGTGAAAAATCGGTG
* * * * *
250838 TTTTGGAAATAAAA-TCAGGGTTGGAGTATCCTCTCAGAAATAATGTGGTTGGAGTAT-CTTCGA
1 TTTTGGAAATAAAACT-AGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCT-GA
*
250901 TGGTGGAAAATCGATGTTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAGAAATAATAAGGT
64 TGGTGGAAAATCGATGTTTTAGAAATAAAA-CGAGGTTGGAGTATCCCCTCAGAAATAACAAGGT
* *
250966 TGGAGTATCCCTGATTGTGAACAAATCGGTG
128 TAGAGTATCCCCGATTGTGAA-AAATCGGTG
* * **
250997 TTTTGGAAATAAAACTAGGGTTAGAGTATCCCCTCAAAAATAGCGGGGTTGGAGTATCTTTGATG
1 TTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATG
* * * * * *
251062 ATGGAAAATCGATGTTTTAGAAATAAAACCAGGGTTTGAGTATCTCCTCGGAAATAACAGGGTTA
66 GTGGAAAATCGATGTTTTAGAAATAAAACGA-GGTTGGAGTATCCCCTCAGAAATAACAAGGTTA
*
251127 GAGCATCCCCGATTGTGAAAACAATCGGTG
130 GAGTATCCCCGATTGTG-AAA-AATCGGTG
* * * * * * * *
251157 TTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTTAGAAATAACGAGGTTGAAGTATCCCTAATT
1 TTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATG
* * * * ** * *
251222 GTGAAAAATCGATGTTCTAGAAATAAAACCGAGGTTAGAGTATCCCTTTGGAAATAACAGGGTTG
66 GTGGAAAATCGATGTTTTAGAAATAAAA-CGAGGTTGGAGTATCCCCTCAGAAATAACAAGGTTA
* * * *
251287 GAGTATCCCCGATGGTGGAAAATTGGTA
130 GAGTATCCCCGATTGTGAAAAATCGGTG
*
251315 TTTTAGAAATAAAA
1 TTTTGGAAATAAAA
251329 ACATGAACGA
Statistics
Matches: 420, Mismatches: 59, Indels: 23
0.84 0.12 0.05
Matches are distributed among these distances:
156 4 0.01
157 55 0.13
158 91 0.22
159 134 0.32
160 134 0.32
161 2 0.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (157 bp):
TTTTGGAAATAAAACTAGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATG
GTGGAAAATCGATGTTTTAGAAATAAAACGAGGTTGGAGTATCCCCTCAGAAATAACAAGGTTAG
AGTATCCCCGATTGTGAAAAATCGGTG
Found at i:254372 original size:31 final size:31
Alignment explanation
Indices: 254299--254484 Score: 182
Period size: 31 Copynumber: 5.9 Consensus size: 31
254289 ATACCTTCTT
* *
254299 AAAGTCCATGACTCAGTGGCATTTTGTC-CC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* *
254329 AAAGCCCGCGACTCAGTGGCATTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
*
254360 AAAGTCCACGACTCAGGGGCATTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* *
254391 AAAATCCACAACTCAGTGGCAATTTCTCTTCT-C
1 AAAGTCCACGACTCAGTGGC-ATTT-T-TTCTCC
* *
254424 AAAGTCCACGACTTAGTGGCAATCTCTTT-T-C
1 AAAGTCCACGACTCAGTGGC-AT-TTTTTCTCC
* * *
254455 AAAGTCCACCACTCCGTGGCACCTTTTTCT
1 AAAGTCCACGACTCAGTGGCA-TTTTTTCT
254485 TTTTAAAGCC
Statistics
Matches: 130, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
30 29 0.22
31 67 0.52
32 6 0.05
33 23 0.18
34 5 0.04
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTTTCTCC
Found at i:254463 original size:64 final size:63
Alignment explanation
Indices: 254299--254484 Score: 159
Period size: 64 Copynumber: 3.0 Consensus size: 63
254289 ATACCTTCTT
* * ** * *
254299 AAAGTCCATGACTCAGTGGCATT-TTGTC-CCAAAGCCCGCGACTCAGTGGC-ATTTTTTCTCC
1 AAAGTCCACGACTCAGGGGCATTCTT-TCTCCAAAATCCACAACTCAGTGGCAATTTTTTCTCC
*
254360 AAAGTCCACGACTCAGGGGCATTTTTTCTCCAAAATCCACAACTCAGTGGCAATTTCTCTTCT-C
1 AAAGTCCACGACTCAGGGGCATTCTTTCTCCAAAATCCACAACTCAGTGGCAATTT-T-TTCTCC
* * * * * **
254424 AAAGTCCACGACTTAGTGGCAATCTCTTT-T-CAAAGTCCACCACTCCGTGGCACCTTTTTCT
1 AAAGTCCACGACTCAGGGGC-AT-TCTTTCTCCAAAATCCACAACTCAGTGGCAATTTTTTCT
254485 TTTTAAAGCC
Statistics
Matches: 104, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
61 23 0.22
62 24 0.23
63 5 0.05
64 41 0.39
65 7 0.07
66 4 0.04
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (63 bp):
AAAGTCCACGACTCAGGGGCATTCTTTCTCCAAAATCCACAACTCAGTGGCAATTTTTTCTCC
Found at i:254508 original size:34 final size:34
Alignment explanation
Indices: 254448--254584 Score: 168
Period size: 34 Copynumber: 4.0 Consensus size: 34
254438 AGTGGCAATC
* * *
254448 TCTTTTCAAAGTCCACCACTCCGTGGCACCTTTT
1 TCTTTTTAAAGCCCACAACTCCGTGGCACCTTTT
*
254482 TCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
1 TCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTT
* * * *
254517 TC-TTTTCAAGTCCATAACTCCGTGGCACATTTT
1 TCTTTTTAAAGCCCACAACTCCGTGGCACCTTTT
* *
254550 TCTTTTTAAAGCCCACAACTCCATGGCACTTTTT
1 TCTTTTTAAAGCCCACAACTCCGTGGCACCTTTT
254584 T
1 T
254585 TCCCTTTTAA
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
33 6 0.07
34 74 0.85
35 7 0.08
ACGTcount: A:0.20, C:0.30, G:0.11, T:0.39
Consensus pattern (34 bp):
TCTTTTTAAAGCCCACAACTCCGTGGCACCTTTT
Found at i:254537 original size:68 final size:68
Alignment explanation
Indices: 254448--254648 Score: 235
Period size: 68 Copynumber: 2.9 Consensus size: 68
254438 AGTGGCAATC
** *
254448 TCTTTTCAAAGTCCACCACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTC
1 TCTTTTC-AAGTCCATAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCAGTGGCACTC
254513 TTTT
65 TTTT
* *
254517 TCTTTTCAAGTCCATAACTCCGTGGCACATTTTTCTTTTTAAAGCCCACAACTCCA-TGGCACTT
1 TCTTTTCAAGTCCATAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACT-CAGTGGCACTC
254581 TTTT
65 TTTT
** * * * *
254585 TCCCTTTT-AAGTCCATAACTCTATGGCATCTTTCTCCTTTTCAAAAGCCCACAAGTCAGTGGCA
1 T--CTTTTCAAGTCCATAACTCCGTGGCACCTTT-TTCTTTT-TAAAGCCCACAACTCAGTGGCA
254649 ACCTTCAAAA
Statistics
Matches: 114, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
68 55 0.48
69 29 0.25
70 13 0.11
71 17 0.15
ACGTcount: A:0.22, C:0.30, G:0.11, T:0.37
Consensus pattern (68 bp):
TCTTTTCAAGTCCATAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCAGTGGCACTCT
TTT
Found at i:254745 original size:49 final size:49
Alignment explanation
Indices: 254685--255173 Score: 467
Period size: 49 Copynumber: 10.0 Consensus size: 49
254675 GGCATCTTCT
* *
254685 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
254734 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
254783 TTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC
* * *
254835 TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCC-TCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTTATC
* *
254884 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
*** * *
254933 TTTAAGTCTGGTATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
254982 TTTAAGACCAATGTCGCTGGCCTTGAATTAGCATATTGG--CC---ATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * * * *
255026 TTTAAGTCCAATATCGTTAGCCTTGCATTAGCATATTGGCATCTTTAAC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * ** * *
255075 ATTCCTAAGCCCAATGTCGTTGGCCTTGTCTCAACACATTGGCA--TTCT-TC
1 -TT--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TATC
* ** * * *
255125 TTCAAACCCAATATCGTTGGCCGTGAATCAGCGTATTGGTC-CCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG-CACCTTTATC
255174 ACTCCTCCTC
Statistics
Matches: 364, Mismatches: 58, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
44 37 0.10
46 1 0.00
47 30 0.08
48 4 0.01
49 211 0.58
50 7 0.02
51 2 0.01
52 70 0.19
53 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
Found at i:254956 original size:150 final size:146
Alignment explanation
Indices: 254685--255072 Score: 532
Period size: 150 Copynumber: 2.7 Consensus size: 146
254675 GGCATCTTCT
* **
254685 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGTCCAATGTCG
1 TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TCATCTTTAAGTCCAATGTCG
* * *
254750 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATTAGC
65 CTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
*
254815 ATATTGGCGCCTTTGTCATC
130 ATATTGGCACC---GTCATC
254835 TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCCTCATCTTTAAGTCCAATGTCG
1 TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CCTCATCTTTAAGTCCAATGTCG
***
254900 CTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCTGGTATCGCTGGCCTTGAATCAGC
65 CTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
254965 ATATTGGCACCGTCATC
130 ATATTGGCACCGTCATC
* * * *
254982 TTTAAGACCAATGTCGCTGGCCTTGAATTAGCATATTGG---C-CATCTTTAAGTCCAATATCGT
1 TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGTCCAATGTCGC
* * * * *
255043 TAGCCTTGCATTAGCATATTGGCATCTTTA
66 TGGCCTTGAATCAGCACATTGGCACCTTTA
255073 ACATTCCTAA
Statistics
Matches: 218, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
142 44 0.20
143 1 0.00
147 43 0.20
150 128 0.59
151 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (146 bp):
TTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGTCCAATGTCGC
TGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
TATTGGCACCGTCATC
Found at i:256772 original size:79 final size:79
Alignment explanation
Indices: 256681--257029 Score: 476
Period size: 79 Copynumber: 4.4 Consensus size: 79
256671 AAATTTAATA
* * * **
256681 TTTTGGAGATAAAAAC-AGGGTTGGAGTATCCCCTCAGAAATAATGGGGTTAGAGTATCCCCAAT
1 TTTTGGAAATAAAACCGA-GGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGAT
*
256745 GGTGGAA-AATC-GATG
65 GGT-AAACAATCAG-TG
* * * * * *
256760 TTTTGAAAATAAAAGCGGGGTTGGAGTATCCCTTCAAAAATAATGGGG-TAGGACTATCCTTGAT
1 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTA-GAGTATCCCTGAT
* *
256824 TGTGAAA-AAT-TGATG
65 GGT-AAACAATCAG-TG
256839 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATG
1 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATG
256904 GTAAACAATCAGTG
66 GTAAACAATCAGTG
256918 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATG
1 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATG
256983 GTAAACAATCAGTG
66 GTAAACAATCAGTG
256997 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCC
1 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCC
257030 GATGATGAAA
Statistics
Matches: 244, Mismatches: 20, Indels: 12
0.88 0.07 0.04
Matches are distributed among these distances:
78 5 0.02
79 236 0.97
80 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (79 bp):
TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATG
GTAAACAATCAGTG
Found at i:257028 original size:51 final size:51
Alignment explanation
Indices: 256964--257075 Score: 136
Period size: 51 Copynumber: 2.2 Consensus size: 51
256954 AAAATAATGG
* * * *
256964 GGTTAGAGTATCCCTGATGGT-AAACAATCAGTGTTTTGGAAATAAAACCGA
1 GGTTGGAGTATCCCCGATGATGAAA-AATCAGTGTTTTAGAAATAAAACCGA
* ** *
257015 GGTTGGAGTATCCCCGATGATGAAAAATCTGTGTTTTAGAAATAAAATTGG
1 GGTTGGAGTATCCCCGATGATGAAAAATCAGTGTTTTAGAAATAAAACCGA
257066 GGTTGGAGTA
1 GGTTGGAGTA
257076 CCTCTTCGAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 49 0.94
52 3 0.06
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATGATGAAAAATCAGTGTTTTAGAAATAAAACCGA
Found at i:257072 original size:130 final size:130
Alignment explanation
Indices: 256885--257156 Score: 320
Period size: 130 Copynumber: 2.1 Consensus size: 130
256875 AAAATAATGG
* * * *
256885 GGTTAGAGTATCCCTGATGGTAAACAATCAGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCC-
1 GGTTGGAGTATCCCCGATGATAAACAATCAGTGTTTTAGAAATAAAACCGAGGTTGGAGTA-CCT
* *
256949 CCTCAAAAATAATGGGGTTAGAGTATCC-CTGATGGT-AAACAATC-AGTGTTTTGGAAATAAAA
65 CCTCAAAAATAACGGGGTTAGAGTATCCTC-GATGGTGAAAAAATCGA-TGTTTTGGAAATAAAA
257011 CCGA
128 CC-A
* ** *
257015 GGTTGGAGTATCCCCGATGATGAAA-AATCTGTGTTTTAGAAATAAAATTGGGGTTGGAGTACCT
1 GGTTGGAGTATCCCCGATGAT-AAACAATCAGTGTTTTAGAAATAAAACCGAGGTTGGAGTACCT
* * * * *
257079 CTTCGAAAATAACGTGGTTGGAGTATCCTCGATTGTGAAAAAATCGATGTTTTGGAAATAAAACC
65 CCTCAAAAATAACGGGGTTAGAGTATCCTCGATGGTGAAAAAATCGATGTTTTGGAAATAAAACC
257144 A
130 A
257145 GGTTTGGAGTAT
1 GG-TTGGAGTAT
257157 TCTCTCGAAA
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
129 2 0.02
130 80 0.66
131 38 0.31
132 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (130 bp):
GGTTGGAGTATCCCCGATGATAAACAATCAGTGTTTTAGAAATAAAACCGAGGTTGGAGTACCTC
CTCAAAAATAACGGGGTTAGAGTATCCTCGATGGTGAAAAAATCGATGTTTTGGAAATAAAACCA
Found at i:257098 original size:79 final size:77
Alignment explanation
Indices: 257012--257376 Score: 292
Period size: 78 Copynumber: 4.6 Consensus size: 77
257002 GAAATAAAAC
* *
257012 CGAGGTTGGAGTATCCCCGATGATGAAAAATCTGTGTTTTAGAAATAAAATTGGGGTTGGAGTAC
1 CGAGGTTGGAGTATCCCCGATG-TGAAAAATC-GTGTTTTAGAAATAAAACTAGGGTTGGAGTAC
257077 CTCTTCGAAAATAA
64 CTCTTCGAAAATAA
* * * * *
257091 CGTGGTTGGAGTATCCTCGATTGTGAAAAAATCGATGTTTTGGAAATAAAACCAGGTTTGGAGTA
1 CGAGGTTGGAGTATCCCCGA-TGTG-AAAAATCG-TGTTTTAGAAATAAAACTAGGGTTGGAGTA
*
257156 -TTCTCTCGAAAATAA
63 CCTCT-TCGAAAATAA
* * * * * * *
257171 CGAGGTTGGAGTAT-CCCGATGGTGGAAAATTGGTATTTTACAAATAAAATTGGGGTTCGAGTAT
1 CGAGGTTGGAGTATCCCCGAT-GT-GAAAAATCGTGTTTTAGAAATAAAACTAGGGTT-G-G-AG
257235 TACCTC-T-G-AAATAA
61 TACCTCTTCGAAAATAA
* * * *** * * *
257249 TGGGGTTAGAGTATCCCATTTGTGAAAAATCAATGTTCTAGAAATAAAACTAAGGTTGGAGTATC
1 CGAGGTTGGAGTATCCCCGATGTGAAAAATC-GTGTTTTAGAAATAAAACTAGGGTTGGAGTA-C
*
257314 C-CCTCGAAAATAA
64 CTCTTCGAAAATAA
* * * *
257327 CGAGGTTGGAGTATCTCCGATGGTGGAAAATCGATATTTTAAAAATAAAA
1 CGAGGTTGGAGTATCCCCGAT-GTGAAAAATCG-TGTTTTAGAAATAAAA
257377 ACATGAATAA
Statistics
Matches: 219, Mismatches: 49, Indels: 36
0.72 0.16 0.12
Matches are distributed among these distances:
75 4 0.02
76 4 0.02
77 8 0.04
78 75 0.34
79 63 0.29
80 60 0.27
81 3 0.01
82 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (77 bp):
CGAGGTTGGAGTATCCCCGATGTGAAAAATCGTGTTTTAGAAATAAAACTAGGGTTGGAGTACCT
CTTCGAAAATAA
Found at i:257218 original size:209 final size:209
Alignment explanation
Indices: 256826--257219 Score: 469
Period size: 209 Copynumber: 1.9 Consensus size: 209
256816 TCCTTGATTG
* *
256826 TGAAAAATTGATGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAG
1 TGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTAG
*
256891 AGTATCCCTGATGGTAAACAATCAGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAA
66 AGTATCCCTGATGGTAAAAAATCAGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAA
* * * **
256956 AATAATGGGGTTAGAGTATCCCTGATGGTAAACAATCAGTGTTTTGGAAATAAAACCGAGGTTGG
131 AATAACGAGGTTAGAGTATCCCTGATGGTAAACAATCAGTATTTTACAAATAAAACCGAGGTTGG
257021 AGTATCCCCGATGA
196 AGTATCCCCGATGA
** * * * *
257035 TGAAAAATCTG-TGTTTTAGAAATAAAATTGGGGTTGGAGTA-CCTCTTCGAAAATAACGTGGTT
1 TGAAAAAT-TGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCC-CCTCAAAAATAACGGGGTT
* * * *
257098 GGAGTAT-CCTCGATTGTGAAAAAATC-GATGTTTTGGAAATAAAACC-AGGTTTGGAGTATTCT
64 AGAGTATCCCT-GATGGT-AAAAAATCAG-TGTTTTGGAAATAAAACCGAGG-TTGGAGTATCCC
* * * **
257160 CTCGAAAATAACGAGGTTGGAGTATCCC-GATGGTGGAA-AATTGGTATTTTACAAATAAAA
125 CTCAAAAATAACGAGGTTAGAGTATCCCTGATGGT-AAACAATCAGTATTTTACAAATAAAA
257220 TTGGGGTTCG
Statistics
Matches: 155, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
208 5 0.03
209 87 0.56
210 63 0.41
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (209 bp):
TGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTAG
AGTATCCCTGATGGTAAAAAATCAGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAAA
AATAACGAGGTTAGAGTATCCCTGATGGTAAACAATCAGTATTTTACAAATAAAACCGAGGTTGG
AGTATCCCCGATGA
Found at i:257218 original size:288 final size:287
Alignment explanation
Indices: 256727--257316 Score: 692
Period size: 288 Copynumber: 2.1 Consensus size: 287
256717 GAAATAATGG
* * *
256727 GGTTAGAGTATCCCCAATGGTGGAAAATCGATGTTTTGAAAATAAAAGCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCAATGATGAAAAATCGATGTTTTGAAAATAAAAGCGGGGTTGGAGTATCCC
* * *
256792 TTCAAAAATAATGGGGTAGGACTATCCTTGATTGTGAAAAATTGATGTTTTGGAAATAAAACCGA
66 TTCAAAAATAACGGGGTAGGACTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCGA
* * *
256857 GGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCCTGATGGTAAACAATCAGTGTTTT
131 GGTTGGAGTATCCCCTCAAAAATAACGAGGTTAGAGTATCCCTGATGGTAAACAATCAGTATTTT
** * *
256922 GGAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATCCC-TGATGGT-
196 ACAAATAAAACCGAGGTTCGAGTATCACCTCAAAAATAATGGGGTTAGAGTATCCCAT--TGGTG
* * * *
256985 AAACAATCAGTGTTTTGGAAATAAAACCGA
259 AAA-AATCAATGTTCTAGAAATAAAACCAA
* **
257015 GGTTGGAGTATCCCCGATGATGAAAAATCTG-TGTTTT-AGAAATAAAATTGGGGTTGGAGTA-C
1 GGTTGGAGTATCCCCAATGATGAAAAATC-GATGTTTTGA-AAATAAAAGCGGGGTTGGAGTATC
* * * *
257077 CTCTTCGAAAATAACGTGGTTGGAGTATCCTCGATTGTGAAAAAATCGATGTTTTGGAAATAAAA
64 C-CTTCAAAAATAACGGGGTAGGACTATCCTCGATTGTG-AAAAATCGATGTTTTGGAAATAAAA
* * * * * **
257142 CC-AGGTTTGGAGTATTCTCTCGAAAATAACGAGGTTGGAGTATCCC-GATGGTGGAA-AATTGG
127 CCGAGG-TTGGAGTATCCCCTCAAAAATAACGAGGTTAGAGTATCCCTGATGGT-AAACAATCAG
** * * **
257204 TATTTTACAAATAAAATTGGGGTTCGAGTATTACCTCTGAAATAATGGGGTTAGAGTATCCCATT
190 TATTTTACAAATAAAACCGAGGTTCGAGTATCACCTCAAAAATAATGGGGTTAGAGTATCCCATT
* *
257269 TGTGAAAAATCAATGTTCTAGAAATAAAACTAA
255 GGTGAAAAATCAATGTTCTAGAAATAAAACCAA
257302 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
257317 TCGAAAATAA
Statistics
Matches: 255, Mismatches: 39, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
287 42 0.16
288 149 0.58
289 64 0.25
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (287 bp):
GGTTGGAGTATCCCCAATGATGAAAAATCGATGTTTTGAAAATAAAAGCGGGGTTGGAGTATCCC
TTCAAAAATAACGGGGTAGGACTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCGA
GGTTGGAGTATCCCCTCAAAAATAACGAGGTTAGAGTATCCCTGATGGTAAACAATCAGTATTTT
ACAAATAAAACCGAGGTTCGAGTATCACCTCAAAAATAATGGGGTTAGAGTATCCCATTGGTGAA
AAATCAATGTTCTAGAAATAAAACCAA
Found at i:258913 original size:70 final size:70
Alignment explanation
Indices: 258800--258945 Score: 283
Period size: 70 Copynumber: 2.1 Consensus size: 70
258790 GTGGAGATGG
258800 AAGGAATGAACAAGGGATGCCAAAACAGAGGCTGCTATGGTGATGAAGATGCAAACTACATGAAA
1 AAGGAATGAACAAGGGATGCCAAAACAGAGGCTGCTATGGTGATGAAGATGCAAACTACATGAAA
258865 GCATC
66 GCATC
*
258870 AAGGAATGAACAAGGGATGCCAAAACAGAGGCTGTTATGGTGATGAAGATGCAAACTACATGAAA
1 AAGGAATGAACAAGGGATGCCAAAACAGAGGCTGCTATGGTGATGAAGATGCAAACTACATGAAA
258935 GCATC
66 GCATC
258940 AAGGAA
1 AAGGAA
258946 ACATCAAAAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 75 1.00
ACGTcount: A:0.42, C:0.14, G:0.27, T:0.16
Consensus pattern (70 bp):
AAGGAATGAACAAGGGATGCCAAAACAGAGGCTGCTATGGTGATGAAGATGCAAACTACATGAAA
GCATC
Found at i:263274 original size:20 final size:20
Alignment explanation
Indices: 263251--263323 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
263241 ACAATTCAAA
263251 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
263271 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
263292 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
263312 GTATCGATACAT
1 GTATCGATACAT
263324 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:263295 original size:21 final size:21
Alignment explanation
Indices: 263269--263344 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
263259 ACATGTTGCA
263269 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
263290 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
263310 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
263331 ATGTATCGATACAT
1 ATGTATCGATACAT
263345 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:263302 original size:41 final size:41
Alignment explanation
Indices: 263251--263344 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
263241 ACAATTCAAA
*
263251 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
263292 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
263333 GTATCGATACAT
1 GTATCGATACAT
263345 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:263401 original size:13 final size:13
Alignment explanation
Indices: 263383--263408 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
263373 TACAGCAAGT
263383 ATGTATCGATACA
1 ATGTATCGATACA
263396 ATGTATCGATACA
1 ATGTATCGATACA
263409 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:267491 original size:15 final size:15
Alignment explanation
Indices: 267471--267501 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
267461 TAAAAATGTC
*
267471 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
267486 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
267501 C
1 C
267502 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:269595 original size:20 final size:21
Alignment explanation
Indices: 269517--269594 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
269507 ATGTCCAAAA
*
269517 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
269537 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
269561 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
269582 TGTATCGATACAT
1 TGTATCGATACAT
269595 TGTATCGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.28
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:269599 original size:13 final size:13
Alignment explanation
Indices: 269581--269619 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
269571 ACATTTTTTG
269581 TTGTATCGATACA
1 TTGTATCGATACA
269594 TTGTATCGATACA
1 TTGTATCGATACA
* *
269607 CTATATCGATACA
1 TTGTATCGATACA
269620 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:271451 original size:34 final size:34
Alignment explanation
Indices: 271413--271478 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
271403 AATTTTGATA
271413 TGAATTACTTGATTAAGGGGGAGATTTTTTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTTTTTT
271447 TGAATTACTTGATTAAGGGGGAGATTTTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTTTT
271479 AAAAAACGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.24, T:0.48
Consensus pattern (34 bp):
TGAATTACTTGATTAAGGGGGAGATTTTTTTTTT
Found at i:272122 original size:20 final size:20
Alignment explanation
Indices: 272099--272171 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
272089 ACAATTCAAA
272099 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
272119 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
272140 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
272160 GTATCGATACAT
1 GTATCGATACAT
272172 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:272143 original size:21 final size:21
Alignment explanation
Indices: 272117--272192 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
272107 ACATGTTGCA
272117 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
272138 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
272158 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
272179 ATGTATCGATACAT
1 ATGTATCGATACAT
272193 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:272150 original size:41 final size:41
Alignment explanation
Indices: 272099--272192 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
272089 ACAATTCAAA
*
272099 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
272140 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
272181 GTATCGATACAT
1 GTATCGATACAT
272193 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:272249 original size:13 final size:13
Alignment explanation
Indices: 272231--272256 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
272221 TACAGCAAGT
272231 ATGTATCGATACA
1 ATGTATCGATACA
272244 ATGTATCGATACA
1 ATGTATCGATACA
272257 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:275805 original size:52 final size:52
Alignment explanation
Indices: 275735--275855 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
275725 GAAAATTTAT
*
275735 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
275787 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
275839 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
275856 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:275868 original size:52 final size:51
Alignment explanation
Indices: 275735--275875 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
275725 GAAAATTTAT
275735 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
275787 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
275839 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
275876 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:275882 original size:13 final size:13
Alignment explanation
Indices: 275864--275888 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
275854 CAAAGATCAG
275864 TGTATCGATACAA
1 TGTATCGATACAA
275877 TGTATCGATACA
1 TGTATCGATACA
275889 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:275971 original size:33 final size:33
Alignment explanation
Indices: 275929--275998 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
275919 GGCAGTAGCT
275929 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
275962 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
275995 TACA
1 TACA
275999 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:275972 original size:13 final size:13
Alignment explanation
Indices: 275954--275978 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
275944 CAAAAAAATA
275954 TGTATCGATACAT
1 TGTATCGATACAT
275967 TGTATCGATACA
1 TGTATCGATACA
275979 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:276984 original size:49 final size:49
Alignment explanation
Indices: 276865--277578 Score: 900
Period size: 49 Copynumber: 14.7 Consensus size: 49
276855 AAAAGGATGT
*
276865 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AA-GGTGC
* * *
276917 CGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
276966 CAATGTGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
277015 CAATATGCTGATTCAAGGCCAGCTATA-TGGACTTAATGGTGCAA-GTTC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AAGGTGC
* * *
277063 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAAGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * * * *
277112 CAATATGCTGTTTAAAGGCCAGCTATATTGGGCTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
277161 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
277210 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
277253 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
277302 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
277345 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
277394 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
277443 CAATATGCTGATTCAAGGCCAGCTACATTGGATTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
277491 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
277543 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
277579 GAAGGGTTGC
Statistics
Matches: 568, Mismatches: 75, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
43 75 0.13
45 2 0.00
47 2 0.00
48 84 0.15
49 326 0.57
50 2 0.00
51 1 0.00
52 76 0.13
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:277197 original size:98 final size:97
Alignment explanation
Indices: 276865--277578 Score: 898
Period size: 92 Copynumber: 7.4 Consensus size: 97
276855 AAAAGGATGT
* *
276865 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGGGTGCCGATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT---AA-GGTGCCAATATGCTGATT
* *
276930 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
62 CAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* *
276966 CAATGTGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAGGTGCCAATATGCTGATTCAA
*
277031 GGCCAGCTATA-TGGACTTAATGGTGCAA-GTTC
65 GGCCAGCTATATTGGACTTAATGGTG-AAGGTGC
* * * *
277063 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAAGTGCCAATATGCTGTTTAAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAGGTGCCAATATGCTGATTCAA
*
277128 GGCCAGCTATATTGGGCTTAATGGTGAAGGTGC
65 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* * *
277161 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAGGTGCCAATATGCTGATTCAA
*
277226 GGCCAGCGATATTGGACTT-A-----AAGGTGC
65 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
*
277253 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAGGTGCCAATATGCTGATTCAA
*
277318 GGCCAGCGATATTGGACTT-A-----AAGGTGC
65 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* *
277345 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAGGTGCCAATATGCTGATTCAA
* * * *
277410 GGCCAGCTACATTGGACTTAAAGATAAAGGTGC
65 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
* * * * *
277443 CAATATGCTGATTCAAGGCCAGCTACATTGGATTTAAAGGTGAGGTGCCAATGTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAGGTGCCAATATGCTGATTCAAG
* **
277508 GCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
66 GCCAGCTATATTGGACTT--A-ATGGTGAAGGTGC
* * *
277543 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
277579 GAAGGGTTGC
Statistics
Matches: 562, Mismatches: 39, Indels: 25
0.90 0.06 0.04
Matches are distributed among these distances:
92 176 0.31
93 1 0.00
97 130 0.23
98 170 0.30
99 4 0.01
100 43 0.08
101 38 0.07
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (97 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAGGTGCCAATATGCTGATTCAAG
GCCAGCTATATTGGACTTAATGGTGAAGGTGC
Found at i:277622 original size:33 final size:35
Alignment explanation
Indices: 277578--277647 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
277568 TATTGGGCTT
277578 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
277612 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
277646 AG
1 AG
277648 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:277697 original size:35 final size:34
Alignment explanation
Indices: 277652--277839 Score: 231
Period size: 35 Copynumber: 5.4 Consensus size: 34
277642 AGGAAGGGAG
* *
277652 AAAGA-TGCCACGGAGTTATGGAC-TTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-GAA
277686 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
277720 AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--GAA
277756 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AGAA
277791 AAA-AGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAGA-GTGCCACGGAGTTGTGGGCTTT-AAAA--GAA
*
277828 AGAGAGTGCCAC
1 AAAGAGTGCCAC
277840 AAAGTTGTAG
Statistics
Matches: 139, Mismatches: 3, Indels: 21
0.85 0.02 0.13
Matches are distributed among these distances:
33 23 0.17
34 16 0.12
35 46 0.33
36 17 0.12
37 36 0.26
38 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.19
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
Found at i:277764 original size:70 final size:72
Alignment explanation
Indices: 277652--277839 Score: 285
Period size: 72 Copynumber: 2.7 Consensus size: 72
277642 AGGAAGGGAG
* * * * *
277652 AAAGATGCCACGGAGTTATGGAC-TTAAAGA-TGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
277715 A-AGAAA
66 ACAGAAA
*
277721 AAA-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
277785 ACAGAAA
66 ACAGAAA
*
277792 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCAC
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCAC
277840 AAAGTTGTAG
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
68 16 0.15
69 8 0.07
70 33 0.31
71 8 0.07
72 42 0.39
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.19
Consensus pattern (72 bp):
AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
ACAGAAA
Found at i:277773 original size:37 final size:36
Alignment explanation
Indices: 277632--278099 Score: 369
Period size: 37 Copynumber: 12.9 Consensus size: 36
277622 CACCGACTTG
* *
277632 TGTGGGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGT
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGT
* * *
277668 TATGGAC-TT-AAAGATGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAG-GGAAAAAGAGTGCCACGGAGT
277703 TGTGGGCTTTAAAA--GAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
277736 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
277773 TGTGGGCTTTAAACA-GAAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGGAAAAAGAGTGCCACGGAGT
* **
277808 TGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*** ** * *
277845 TGTAGGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGAAGT
1 TGT-GG-GCTTTA-A---AAGGG------AA-AAAGA-GTGCCACGGAGT
* **
277895 TGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
277932 TGTGGGC-TTAAAA--GAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* **
277964 TGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
278001 TGTGGGCTTTAAAA--GAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
278034 TGTGGGCTTTGAAAA--GAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
278068 TGTGAGCTTTGAAAAGGGAAAAAGAGTGCCAC
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCAC
278100 AAAGTTGTAG
Statistics
Matches: 354, Mismatches: 42, Indels: 71
0.76 0.09 0.15
Matches are distributed among these distances:
32 17 0.05
33 53 0.15
34 63 0.18
35 45 0.13
36 49 0.14
37 85 0.24
38 7 0.02
39 5 0.01
42 3 0.01
45 2 0.01
48 5 0.01
49 6 0.02
50 14 0.04
ACGTcount: A:0.35, C:0.12, G:0.34, T:0.20
Consensus pattern (36 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:277910 original size:87 final size:89
Alignment explanation
Indices: 277761--277934 Score: 289
Period size: 87 Copynumber: 2.0 Consensus size: 89
277751 GGGAAAAAGA
* * *
277761 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGG
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAAGGTGCCACGAAGTTGTGGGCTTTAAAAAGGA
*
277826 AAAGAGAGTGCCACAAAGTTGTAG
66 AAAAAGAGTGCCACAAAGTTGTAG
*
277850 GTGCCACAGAGTTGTGGGCTTTAAA-AG-AAAAAGGTGCCACGAAGTTGTGGGCTTTGAAAAGGA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAAGGTGCCACGAAGTTGTGGGCTTTAAAAAGGA
277913 AAAAAGAGTGCCACAAAGTTGT
66 AAAAAGAGTGCCACAAAGTTGT
277935 GGGCTTAAAA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 54 0.68
88 2 0.03
89 24 0.30
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (89 bp):
GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAAGGTGCCACGAAGTTGTGGGCTTTAAAAAGGA
AAAAAGAGTGCCACAAAGTTGTAG
Found at i:277986 original size:70 final size:70
Alignment explanation
Indices: 277850--278083 Score: 368
Period size: 69 Copynumber: 3.4 Consensus size: 70
277840 AAAGTTGTAG
* * *
277850 GTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGAAGTTGTGGGCTTTGAAAAGGAAA
1 GTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
277915 AAAGA
66 AAAGA
277920 GTGCCACAAAGTTGTGGGC-TTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
1 GTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
277984 AAAGA
66 AAAGA
277989 GTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-G-AA
1 GTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
*
278052 GAAG-
66 AAAGA
** *
278056 GTGCCACGGAGTTGTGAGCTTTGAAAAG
1 GTGCCACAAAGTTGTGGGCTTT-AAAAG
278084 GGAAAAAGAG
Statistics
Matches: 155, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
67 19 0.12
68 10 0.06
69 68 0.44
70 58 0.37
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (70 bp):
GTGCCACAAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAA
AAAGA
Found at i:278071 original size:104 final size:105
Alignment explanation
Indices: 277848--278107 Score: 381
Period size: 104 Copynumber: 2.5 Consensus size: 105
277838 ACAAAGTTGT
* *
277848 AGGTGCCACAGAGTTGTGGGCTTT-AAAA-GAAAAAG-GTGCCACGAAGTTGTGGGCTTTGAAAA
1 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACAAAGTTGTGGGCTTTGAAAA
277910 GGAAAAAAGAGTGCCACAAAGTTGTGGGCTTAAAAGAAGA
66 GGAAAAAAGAGTGCCACAAAGTTGTGGGCTTAAAAGAAGA
277950 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGTTGTGGGCTTT-AAA
1 AGGTGCCACGGAGTTGTGGGCTTTGAAAAGG-AAAAAGAGTGCCACAAAGTTGTGGGCTTTGAAA
* **
278014 A-G-AAGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAAGA
65 AGGAAAAAAGAGTGCCACAAAGTTGTGGGC-TT-AAAAGAAGA
*
278054 AGGTGCCACGGAGTTGTGAGCTTTGAAAAGGGAAAAAGAGTGCCACAAAGTTGT
1 AGGTGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACAAAGTTGT
278108 AGGTGCCACA
Statistics
Matches: 145, Mismatches: 6, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
102 40 0.28
103 11 0.08
104 61 0.42
105 12 0.08
106 21 0.14
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.20
Consensus pattern (105 bp):
AGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACAAAGTTGTGGGCTTTGAAAA
GGAAAAAAGAGTGCCACAAAGTTGTGGGCTTAAAAGAAGA
Found at i:278153 original size:34 final size:33
Alignment explanation
Indices: 278110--278318 Score: 163
Period size: 28 Copynumber: 6.6 Consensus size: 33
278100 AAAGTTGTAG
*
278110 GTGCCACAGAGTTGTGGACTTAAAGATGAAAAAA
1 GTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAA
* * * **
278144 GTGCCACAGAATTGTGGGCTT----T-AAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAATGAAAAAA
278172 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAA
1 GTGCCACGGAGTTGTGGACTTAAA-ATGAAAAAA
* * * *
278206 GTGCCACGAAATTGTGGGCTT----T-AAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAATGAAAAAA
* * *
278234 GTGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTTGTGGACTTAAAATGAAAAAA
* *
278267 GTGCCACGGAGTTGTGGGCTTTAAA-GAAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAATGAAAAAA
* *
278299 -TGCCACTGAGTCGTGGACTT
1 GTGCCACGGAGTTGTGGACTT
278319 TGAGACAAAA
Statistics
Matches: 139, Mismatches: 25, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
28 45 0.32
29 2 0.01
31 17 0.12
32 5 0.04
33 29 0.21
34 41 0.29
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.22
Consensus pattern (33 bp):
GTGCCACGGAGTTGTGGACTTAAAATGAAAAAA
Found at i:278184 original size:62 final size:61
Alignment explanation
Indices: 278108--278291 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 61
278098 ACAAAGTTGT
*
278108 AGGTGCCACAGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACAGAATTGTGGGCTTTAAAA
1 AGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCAC-GAATTGTGGGCTTTAAAA
*
278170 GGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATTGTGGGCTTTAAAA
1 AGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACG-AATTGTGGGCTTTAAAA
* * * *
278232 AGGTGCCACGGAGTTGTGGACTTAAA-AGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAA
1 AGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCAC-GAATTGTGGGCTTTAAA
278292 GAAAAAATGC
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
61 29 0.26
62 84 0.74
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (61 bp):
AGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAATTGTGGGCTTTAAAA
Found at i:278330 original size:30 final size:31
Alignment explanation
Indices: 278235--278352 Score: 121
Period size: 30 Copynumber: 3.8 Consensus size: 31
278225 TTTAAAAAGG
* * * **
278235 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACTGAGTCGTGGACTTTAAA-GAA-AAAA
* * *
278268 TGCCACGGAGTTGTGGGCTTTAAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
* *
278299 TGCCACTGAGTCGTGGACTTT-GAGACAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
278329 TGCCACTGAGTCGTGGACTTTAAA
1 TGCCACTGAGTCGTGGACTTTAAA
278353 AAGGTATTTG
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
30 28 0.38
31 21 0.28
32 3 0.04
33 22 0.30
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
Found at i:278352 original size:95 final size:95
Alignment explanation
Indices: 278171--278353 Score: 214
Period size: 95 Copynumber: 1.9 Consensus size: 95
278161 GCTTTAAAAG
* * *
278171 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATTGTGGGCTTTAAAAAGGT
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATCGTGGACTTTAAAAAGAT
*
278236 GCCACGGAGTTGTGGACTTAAAAGGAACAA
66 GCCACGGAGTCGTGGACTTAAAAGGAACAA
* * *
278266 GGTGCCACGGAGTTGTGGGCTTTAA-A-GAAAAAA-TGCCACTG-AGTCGTGGACTTTGAGACAA
1 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCAC-GAAATCGTGGACTTT-A-A-AA
*
278327 A-ATGCCACTGAGTCGTGGACTTTAAAA
62 AGATGCCACGGAGTCGTGGAC-TTAAAA
278354 AGGTATTTGA
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
92 16 0.21
93 9 0.12
94 18 0.24
95 32 0.43
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (95 bp):
GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGAAATCGTGGACTTTAAAAAGAT
GCCACGGAGTCGTGGACTTAAAAGGAACAA
Found at i:293567 original size:31 final size:33
Alignment explanation
Indices: 293490--293569 Score: 105
Period size: 32 Copynumber: 2.5 Consensus size: 33
293480 TCAAATTTAA
*
293490 CTAG-ATGTATCGATACATTTAGGTCAAAAATC
1 CTAGAATGTATCAATACATTTAGGTCAAAAATC
* *
293522 C-AAAATATATCAATACATTTAGGTC-AAAA-C
1 CTAGAATGTATCAATACATTTAGGTCAAAAATC
293552 CTAGAATGTATCAATACA
1 CTAGAATGTATCAATACA
293570 ATTAAAAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
30 2 0.05
31 19 0.46
32 20 0.49
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (33 bp):
CTAGAATGTATCAATACATTTAGGTCAAAAATC
Found at i:293667 original size:20 final size:20
Alignment explanation
Indices: 293630--293681 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
293620 ACAAGGTCCA
*
293630 ATATCGATACATTCACTTAT
1 ATATCGATACATTAACTTAT
* * *
293650 ATATTGATATATTAACTTGTT
1 ATATCGATACATTAACTT-AT
*
293671 GTATCGATACA
1 ATATCGATACA
293682 AATTGTAGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (20 bp):
ATATCGATACATTAACTTAT
Found at i:294502 original size:20 final size:20
Alignment explanation
Indices: 294455--294508 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
294445 ACATTATGCT
***
294455 TTGTATCGATACAT-GTTTA
1 TTGTATCGATACATGGACAA
*
294474 TTGTGTCGATACATGGACAA
1 TTGTATCGATACATGGACAA
294494 TTGTATCGATACATG
1 TTGTATCGATACATG
294509 AAACTGGCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGGACAA
Found at i:294571 original size:13 final size:13
Alignment explanation
Indices: 294553--294583 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
294543 TGATACATGG
294553 TACATTGTATCGA
1 TACATTGTATCGA
294566 TACATTGTATCGA
1 TACATTGTATCGA
294579 TACAT
1 TACAT
294584 AATGAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:296207 original size:3 final size:3
Alignment explanation
Indices: 296192--296222 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
296182 AACCATCAAA
*
296192 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
296223 GTGACTCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:303298 original size:20 final size:19
Alignment explanation
Indices: 303253--303308 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
303243 TGTATCGATG
* **
303253 CATTGTATCAATACATGTT
1 CATTGTATCGATACATGGA
303272 CATTGTATCGATACATGGA
1 CATTGTATCGATACATGGA
303291 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
303309 AAACTGGTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATGGA
Found at i:310817 original size:14 final size:14
Alignment explanation
Indices: 310800--310834 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
310790 AATTAATAGT
310800 TATGTATGAATATA
1 TATGTATGAATATA
310814 TATGTATGAATATA
1 TATGTATGAATATA
310828 -ATGTATG
1 TATGTATG
310835 TATGCATGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (14 bp):
TATGTATGAATATA
Found at i:318000 original size:2 final size:2
Alignment explanation
Indices: 317993--318029 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
317983 AATGACATAC
*
317993 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
318030 CCACATTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:318030 original size:10 final size:10
Alignment explanation
Indices: 317989--318030 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
317979 ACATAATGAC
317989 ATACATATAT
1 ATACATATAT
317999 AT--ATATAT
1 ATACATATAT
*
318007 ATATATATAT
1 ATACATATAT
318017 ATACATATAT
1 ATACATATAT
318027 ATAC
1 ATAC
318031 CACATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 8 0.28
10 21 0.72
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (10 bp):
ATACATATAT
Found at i:325621 original size:22 final size:21
Alignment explanation
Indices: 325578--325623 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
325568 CTTGGCCATT
*
325578 TAATTATAAATTATATTTATA
1 TAATTATAAATTATATTCATA
325599 TAATTATATAATTCATA-TCATA
1 TAATTATA-AATT-ATATTCATA
325621 TAA
1 TAA
325624 AAGATAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 11 0.50
23 3 0.14
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (21 bp):
TAATTATAAATTATATTCATA
Found at i:326785 original size:1 final size:1
Alignment explanation
Indices: 326779--326810 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
326769 CTACAGATAC
326779 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
326811 CCAAATCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:331014 original size:21 final size:19
Alignment explanation
Indices: 330990--331031 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
330980 GTTTTATATA
330990 AAAAAATTTAAAATTTATTAT
1 AAAAAA-TT-AAATTTATTAT
*
331011 AAAAAATTAAATTTATCAT
1 AAAAAATTAAATTTATTAT
331030 AA
1 AA
331032 TTAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 2 0.10
21 6 0.30
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAAATTAAATTTATTAT
Found at i:331404 original size:13 final size:13
Alignment explanation
Indices: 331386--331410 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
331376 CATAAAATGT
331386 TGTATCGATACAA
1 TGTATCGATACAA
331399 TGTATCGATACA
1 TGTATCGATACA
331411 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:331405 original size:33 final size:33
Alignment explanation
Indices: 331368--331432 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
331358 AACGATTTTT
331368 TATCGATACATAAAATGTTGTATCGATACAATG
1 TATCGATACATAAAATGTTGTATCGATACAATG
*** *
331401 TATCGATACATATTTTTTTGTATCGATACAAT
1 TATCGATACATAAAATGTTGTATCGATACAAT
331433 TTAAGCTACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (33 bp):
TATCGATACATAAAATGTTGTATCGATACAATG
Found at i:331494 original size:13 final size:13
Alignment explanation
Indices: 331476--331500 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
331466 ATTACTCACA
331476 TGTATCGATACAT
1 TGTATCGATACAT
331489 TGTATCGATACA
1 TGTATCGATACA
331501 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:331637 original size:52 final size:52
Alignment explanation
Indices: 331509--331629 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
331499 CACTGATCTT
*
331509 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
331561 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
331613 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
331630 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:338871 original size:1 final size:1
Alignment explanation
Indices: 338867--338897 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
338857 AAAAAGATGC
*
338867 AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
338898 CCCCTTTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:339914 original size:61 final size:63
Alignment explanation
Indices: 339839--340498 Score: 440
Period size: 61 Copynumber: 10.3 Consensus size: 63
339829 TTTTTAACGT
* * * * *
339839 CCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAATTCCGTGGCACCTCATCTTTAAGT
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTCTTCTTTAAGC
* * * *
339900 CCACAACTCCGTGGCAC-----CCTTTTACAGCCCACAATTCCGTGGCACCTCATCTTTAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTCTTCTTTAAGC
* *
339958 CCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTCCGTGGCA-CTCTTC--AAA
1 CCACAACTCCGTGGCA--CTTTTT-TCTTTT-AAAGCCCACAACTCCGTGGCACCTCTTCTTTAA
340020 GC
62 GC
* * *
340022 CCACGACTCCGTGGCAC-----TC-TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAA
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACC-TCTTC--TTT-AA
340081 GC
62 GC
* *
340083 CCACAACTCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACGACTCCGTGGCA-CTC-T-TTAAA
1 CCACAACTCCGTGGCA--CTTTTT-TCTTTT-AAAGCCCACAACTCCGTGGCACCTCTTCTTTAA
340145 GC
62 GC
* * * *
340147 CCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAA
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACC-TCTTC-TTT--A
340212 AGC
61 AGC
* * * *
340215 CCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCA-CTCTT-TTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACCTCTTCTTT-AAGC
* ** * *
340278 CCACAACTCTGTGGCACTCTTTTTCCTCCT-AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
1 CCACAACTCCGTGGCACT-TTTTT-CTTTTAAAGCCCACAACTCCGTGGCAC-C-TCTT-CTT-T
340342 AAGC
60 AAGC
* * * * *
340346 CCACAACTCCGTGGCA-----TCCTTTT-AAGCCCATAACTCCGTGGCACTTTTTTCATCTTTGA
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC----CTCTTCTTTAA
*
340405 GT
62 GC
* *
340407 CCATAACTCCGTGGCACCTTTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 CCACAACTCCGTGGCA-C--TTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC-C-TCTT--C-T
*
340472 TTAAGT
58 TTAAGC
340478 CCACAACTCCGTGGCATCTTT
1 CCACAACTCCGTGGCA-CTTT
340499 CTCCCTTCCT
Statistics
Matches: 484, Mismatches: 56, Indels: 110
0.74 0.09 0.17
Matches are distributed among these distances:
54 20 0.04
55 3 0.01
56 6 0.01
57 1 0.00
58 52 0.11
60 1 0.00
61 99 0.20
62 10 0.02
63 45 0.09
64 47 0.10
65 6 0.01
66 19 0.04
67 20 0.04
68 76 0.16
69 13 0.03
70 24 0.05
71 42 0.09
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (63 bp):
CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTCTTCTTTAAGC
Found at i:340006 original size:125 final size:125
Alignment explanation
Indices: 339865--340361 Score: 551
Period size: 125 Copynumber: 3.9 Consensus size: 125
339855 TTTTTTCTTT
* * * * *
339865 AAAGCCCACAATTCCGTGGCACCTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTTACAGCCC
1 AAAGCCCACGACTCCGTGGCA-CTC-T-TTAAAGCCCACAACTCCGTGGCACCCTTTTAAAGCCC
* *
339930 ACAATTCCGTGGCACC-TCATC-TTT-AAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
63 ACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
* * * *
339990 AAAGCCCACGACTCCGTGGCACTCTTCAAAGCCCACGACTCCGTGGCACTC-TTCAAAGCCCACA
1 AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCCGTGGCACCCTTTTAAAGCCCACA
*
340054 ACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
66 ACTCCGTGGCACCTTCTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
*
340115 AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAG
1 AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCCGTGGCA-C--C--CTTTT-AAAG
* * *
340180 CCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCAC-C-TTCT-TCTTT
60 CCCACAACTCCGTGGCACCTTCTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTT
340242 TC
124 TC
* * *
340244 AAAGCCCACGACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTCCTA
1 AAAGCCCACGACTCCGTGGCACTC--TTTAAAGCCCACAACTCCGTGGCAC-C-CTTT--T--AA
* * *
340309 AGCCCACAACTCTGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCA
58 AGCCCACAACTCCGTGGCAC-CTTCTT-CTTTTAAAGCCCACAACTCCGTGGCA
340362 TCCTTTTAAG
Statistics
Matches: 327, Mismatches: 26, Indels: 32
0.85 0.07 0.08
Matches are distributed among these distances:
121 23 0.07
122 24 0.07
123 1 0.00
124 6 0.02
125 100 0.31
126 1 0.00
128 4 0.01
129 33 0.10
130 6 0.02
131 71 0.22
132 54 0.17
133 4 0.01
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (125 bp):
AAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCCGTGGCACCCTTTTAAAGCCCACA
ACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
Found at i:340017 original size:27 final size:27
Alignment explanation
Indices: 339987--340065 Score: 149
Period size: 27 Copynumber: 2.9 Consensus size: 27
339977 TTTTTCTCTT
339987 TTCAAAGCCCACGACTCCGTGGCACTC
1 TTCAAAGCCCACGACTCCGTGGCACTC
340014 TTCAAAGCCCACGACTCCGTGGCACTC
1 TTCAAAGCCCACGACTCCGTGGCACTC
*
340041 TTCAAAGCCCACAACTCCGTGGCAC
1 TTCAAAGCCCACGACTCCGTGGCAC
340066 CTTTTTCTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.24, C:0.41, G:0.18, T:0.18
Consensus pattern (27 bp):
TTCAAAGCCCACGACTCCGTGGCACTC
Found at i:340087 original size:34 final size:33
Alignment explanation
Indices: 339830--340498 Score: 456
Period size: 34 Copynumber: 20.9 Consensus size: 33
339820 TCAAATACCT
* * * * *
339830 TTTTAACGTCCACGACTCAGTGGCA-TTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* **
339862 -TTTAAAGCCCACAATTCCGTGGCACC-TCATC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
339893 -TTT-AAGTCCACAACTCCGTGGCACC-----C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * **
339919 TTTTACAGCCCACAATTCCGTGGCACC-TCATC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
339951 -TTT-AAGCCCACAACTCCGTGGCACTCTTTTTCTC
1 TTTTAAAGCCCACAACTCCGTGGCAC-C-TTTT-TC
*
339985 TTTTCAAAGCCCACGACTCCGTGGCA-C----TC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
340014 -TTCAAAGCCCACGACTCCGTGGCA-C----TC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
340041 -TTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
340073 TGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTC
1 T-TTTAAAGCCCACAACTCCGTGGCAC-C-TTTT-TC
*
340110 TTTTCAAAGCCCACGACTCCGTGGCA-C----TC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
340139 -TTTAAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
340171 TTTTCAAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
340205 TTTTCAAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
* *
340239 TTTTCAAAGCCCACGACTCCGTGGCA-C--TCT-
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTTTTC
*
340269 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
** *
340304 TCCT-AAGCCCACAACTCTGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* *
340338 TTCT-AAGCCCACAACTCCGTGGCA-----TCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
340365 TTTT-AAGCCCATAACTCCGTGGCACTTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * *
340397 ATCTTT-GAGTCCATAACTCCGTGGCACCTTTTTTTTC
1 -T-TTTAAAGCCCACAACTCCGTGGCACC---TTTTTC
340434 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--C
* *
340470 TTTT-AAGTCCACAACTCCGTGGCATCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT
340499 CTCCCTTCCT
Statistics
Matches: 538, Mismatches: 47, Indels: 102
0.78 0.07 0.15
Matches are distributed among these distances:
26 1 0.00
27 92 0.17
28 27 0.05
29 23 0.04
30 43 0.08
31 31 0.06
32 7 0.01
33 8 0.01
34 196 0.36
35 30 0.06
36 31 0.06
37 49 0.09
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.32
Consensus pattern (33 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:340132 original size:98 final size:96
Alignment explanation
Indices: 340014--340332 Score: 368
Period size: 98 Copynumber: 3.3 Consensus size: 96
340004 CGTGGCACTC
*
340014 TTCAAAGCCCACGACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTA
1 TTCAAAGCCCACAACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACC-TTTTCT-TTTA
*
340079 AAGCCCACAACTCCGTGGCACTCTTTTTCTCTT
64 AAGCCCACAACTCTGTGGCACTCTTTTTCTCTT
* * *
340112 TTCAAAGCCCACGACTCCGTGGCACTCTTTAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCA
1 TTCAAAGCCCACAACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACCTT-TTCTTTT-A
*
340177 AAGCCCACAACTCTGTGGCAC-C-TTCT-TCTT
64 AAGCCCACAACTCTGTGGCACTCTTTTTCTCTT
* * *
340207 TTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCA-C-TCT-
1 TTCAAAGCCCACAACTCCGTGGCA----C-TC--TTCAAAGCCCACAACTCCGTGGCACCTTTTC
340269 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC-C--
59 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCTCTT
* * *
340304 TCCTAAGCCCACAACTCTGTGGCACTCTT
1 TTCAAAGCCCACAACTCCGTGGCACTCTT
340333 TTTCCTTCTA
Statistics
Matches: 196, Mismatches: 13, Indels: 32
0.81 0.05 0.13
Matches are distributed among these distances:
90 2 0.01
92 2 0.01
93 1 0.01
95 26 0.13
96 3 0.02
97 50 0.26
98 81 0.41
99 6 0.03
100 3 0.02
101 1 0.01
102 21 0.11
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.30
Consensus pattern (96 bp):
TTCAAAGCCCACAACTCCGTGGCACTCTTCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTAAA
GCCCACAACTCTGTGGCACTCTTTTTCTCTT
Found at i:340289 original size:97 final size:97
Alignment explanation
Indices: 340014--340466 Score: 395
Period size: 97 Copynumber: 4.7 Consensus size: 97
340004 CGTGGCACTC
*
340014 TTCAAAGCCCACGACTCCGTGGCA----C-TC-TTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTCAAAGCCCACAACTCCGTGGCA-C----TC
*
340073 TGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTT
61 TTTTTAAAGCCCACAACTCCGTGGCACTC-TTTT-TCTT
* *
340112 TTCAAAGCCCACGACTCCGTGGCA----C-TCTTT-AAAGCCCACAACTCTGTGGCACCTTCTTC
1 TTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTCAAAGCCCACAACTCCGTGGCA-C-TC-T-
* *
340171 TTTTCAAAGCCCACAACTCTGTGGCAC-CTTCTTCTT
62 TTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
340207 TTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACGACTCCGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTCTTC-TTTCAAAGCCCACAACTCCGTGGCACTCTTTT
* *
340272 TAAAGCCCACAACTCTGTGGCACTCTTTTTC-C
65 TAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* * * * * * *
340304 TCCTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCA-TCCTTT
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTCTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
*
340368 T-AAGCCCATAACTCCGTGGCACT-TTTTTCATCT
65 TAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-T
* * * * *
340401 TT--GAGTCCATAACTCCGTGGCACCTTTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 TTCAAAGCCCACAACTCCGTGGCACC---TTCTTCTTTCAAAGCCCACAACTCCGTGGCACTCTT
340464 TTT
63 TTT
340467 CCCTTTTAAG
Statistics
Matches: 306, Mismatches: 29, Indels: 40
0.82 0.08 0.11
Matches are distributed among these distances:
94 7 0.02
95 66 0.22
96 10 0.03
97 100 0.33
98 92 0.30
99 4 0.01
100 4 0.01
101 4 0.01
102 19 0.06
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.32
Consensus pattern (97 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
AAAGCCCACAACTCCGTGGCACTCTTTTTCTT
Found at i:340312 original size:63 final size:63
Alignment explanation
Indices: 340038--340335 Score: 341
Period size: 63 Copynumber: 4.6 Consensus size: 63
340028 CTCCGTGGCA
* *
340038 CTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCT
1 CTCTTCAAAGCCCACAACTCCGTGGCA-C----TCTTTTTAAAGCCCACAACTCTGTGGCAC-CT
*
340103 TTTT
60 TCTT
*
340107 CTCTTTTCAAAGCCCACGACTCCGTGGCACTC--TTTAAAGCCCACAACTCTGTGGCACCTTCTT
1 CTC--TTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACCTTCTT
* *
340170 CTTTTCAAAGCCCACAACTCTGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACCTT
1 CTCTTCAAAGCCCACAACTCCGTGGCA-C-TC-T-TTTT-AAAGCCCACAACTCTGTGGCACCTT
340235 CTT
61 CTT
* * *
340238 CTTTTCAAAGCCCACGACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT
1 CTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCAC-CTTCTT
* * *
340302 C-CTCCTAAGCCCACAACTCTGTGGCACTCTTTTT
1 CTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
340336 CCTTCTAAGC
Statistics
Matches: 205, Mismatches: 14, Indels: 26
0.84 0.06 0.11
Matches are distributed among these distances:
61 22 0.11
62 1 0.00
63 59 0.29
64 34 0.17
65 1 0.00
66 4 0.02
67 4 0.02
68 53 0.26
69 3 0.01
70 1 0.00
71 23 0.11
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (63 bp):
CTCTTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCTGTGGCACCTTCTT
Found at i:340395 original size:27 final size:27
Alignment explanation
Indices: 340335--340388 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
340325 GCACTCTTTT
*
340335 TCCTTCTAAGCCCACAACTCCGTGGCA
1 TCCTTTTAAGCCCACAACTCCGTGGCA
*
340362 TCCTTTTAAGCCCATAACTCCGTGGCA
1 TCCTTTTAAGCCCACAACTCCGTGGCA
340389 CTTTTTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.37, G:0.15, T:0.26
Consensus pattern (27 bp):
TCCTTTTAAGCCCACAACTCCGTGGCA
Found at i:340451 original size:36 final size:34
Alignment explanation
Indices: 340364--340498 Score: 146
Period size: 35 Copynumber: 3.9 Consensus size: 34
340354 CCGTGGCATC
*
340364 CTTTTAAGCCCATAACTCCGTGGCACTTTTTTCAT
1 CTTTTAAGCCCACAACTCCGTGGCACTTTTTT-AT
* * * *
340399 C-TTTGAGTCCATAACTCCGTGGCACCTTTTTTTT
1 CTTTTAAGCCCACAACTCCGTGGCA-CTTTTTTAT
**
340433 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAGCCCACAACTCCGTGGCACT-TTTTTAT
*
340469 CTTTTAAGTCCACAACTCCGTGGCATCTTT
1 CTTTTAAGCCCACAACTCCGTGGCA-CTTT
340499 CTCCCTTCCT
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
34 23 0.27
35 34 0.40
36 29 0.34
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.39
Consensus pattern (34 bp):
CTTTTAAGCCCACAACTCCGTGGCACTTTTTTAT
Found at i:340504 original size:34 final size:34
Alignment explanation
Indices: 340363--340505 Score: 144
Period size: 36 Copynumber: 4.1 Consensus size: 34
340353 TCCGTGGCAT
* *
340363 CCTTTTAAGCCCATAACTCCGTGGCA-CTTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCATCTTTTTC
* * * * * *
340396 CATCTTTGAGTCCATAACTCCGTGGCACCTTTTTTT
1 CCT-TTTAAGCCCACAACTCCGTGGCATC-TTTTTC
*
340432 TCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 CCTTTT-AAGCCCACAACTCCGTGGCA-TCTTTTTC
* *
340468 CCTTTTAAGTCCACAACTCCGTGGCATCTTTCTC
1 CCTTTTAAGCCCACAACTCCGTGGCATCTTTTTC
340502 CCTT
1 CCTT
340506 CCTAAAGCCC
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
33 2 0.02
34 32 0.35
35 23 0.25
36 34 0.37
37 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.12, T:0.38
Consensus pattern (34 bp):
CCTTTTAAGCCCACAACTCCGTGGCATCTTTTTC
Found at i:340512 original size:71 final size:70
Alignment explanation
Indices: 340369--340518 Score: 178
Period size: 71 Copynumber: 2.1 Consensus size: 70
340359 GCATCCTTTT
* * * * **
340369 AAGCCCATAACTCCGTGGCACTTTTTTCATCTTTGAGTCCATAACTCCGTGGCACCTTTTTTTTC
1 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCTTTTCTCCC
*
340434 TTTTA
66 TTCTA
* *
340439 AAGCCCACAACTCCGTGGCACTCTTTTTC-CCTTTTAAGTCCACAACTCCGTGGCATC-TTTCTC
1 AAGCCCACAACTCCGTGGCACT-TTTTTCATC-TTTAAGTCCACAACTCCGTGGCACCTTTTCTC
340502 CCTTCCTA
64 CCTT-CTA
340510 AAGCCCACA
1 AAGCCCACA
340519 CAAGTCGGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
70 29 0.43
71 39 0.57
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (70 bp):
AAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCTTTTCTCCC
TTCTA
Found at i:340546 original size:33 final size:35
Alignment explanation
Indices: 340503--340572 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
340493 ATCTTTCTCC
340503 CTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
340537 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
340571 CT
1 CT
340573 AAGCCCAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 24 0.69
34 11 0.31
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (35 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:340636 original size:49 final size:49
Alignment explanation
Indices: 340572--342222 Score: 2017
Period size: 49 Copynumber: 33.9 Consensus size: 49
340562 GCAACCCTTC
*
340572 TAAGCCCAATATAGCTGGCCTTGAATCAGCATC-TTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCA-CATTGGCATCTTCATCTT
*
340621 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
340664 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
*
340713 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
340756 TAAGTCCAATATCGCTGGCATTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
340805 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
340854 TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
340903 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
340952 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341001 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
341050 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341099 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341148 TAAGTCCAATATTGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
341197 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341246 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * * *
341295 TAGGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341344 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
341393 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341442 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341491 TAAGTCCAATATTGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341540 TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341589 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
341638 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341687 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
341736 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341785 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
341834 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341883 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341932 TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
341981 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* *
342030 TAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* *
342073 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG--CATCTT-CATCTT
* * * *
342125 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAT-C----T-TCATCTT
* * * * * *
342180 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTT
342223 TATCACTCTT
Statistics
Matches: 1366, Mismatches: 208, Indels: 56
0.84 0.13 0.03
Matches are distributed among these distances:
43 113 0.08
45 5 0.00
47 2 0.00
48 1 0.00
49 1166 0.85
50 5 0.00
52 35 0.03
54 1 0.00
55 37 0.03
56 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
Found at i:340880 original size:98 final size:98
Alignment explanation
Indices: 340567--342155 Score: 2305
Period size: 98 Copynumber: 16.4 Consensus size: 98
340557 CGGTGGCAAC
* * * *
340567 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATCTTGGCATCTTCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATG
*
340632 TAGCTGGCCTTGAATCAGCACATTGG------CA
65 TAGCTGGCCTTGACTCAGCACATTGGCACCTTCA
* * * *
340660 CCTTTAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
*
340725 AGCTGGCCTTGAATCAGCACATTGG------CA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
*
340752 CCTTTAAGTCCAATATCGCTGGCATTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
340817 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
*
340850 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
340915 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
340948 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
341013 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
341046 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
341111 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
* * * * * * *
341144 CCTTTAAGTCCAATATTGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
* * * * *
341209 TGCTGGCCTTGAATCAGCATATTGGCATCATCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
* * * * * * * * * *
341242 TCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAGGTCCAATAT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
* * * * * *
341307 CGCTGGCCTTGAATCAACATATTGGCATCATCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
* * * * * * * * *
341340 TCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
* * * * *
341405 CGCTGGCCTTGAATCAGCATATTGGCATCATCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
* * * * * * * * *
341438 TCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
*
341503 TGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
*
341536 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
341601 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
341634 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
341699 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
341732 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
341797 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
*
341830 CCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
341895 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
*
341928 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
341993 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
66 AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
* * * * *
342026 CCTTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGG---CA-C--CTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
* * *
342085 AGCTGGCCTTGAATCAGCATATTGGCACATTTTCCA
66 AGCTGGCCTTGACTCAGCACATTGGCAC--CTT-CA
* * * *
342121 TCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
342156 CGTTGACATC
Statistics
Matches: 1426, Mismatches: 61, Indels: 16
0.95 0.04 0.01
Matches are distributed among these distances:
92 210 0.15
93 4 0.00
94 3 0.00
95 36 0.03
98 1173 0.82
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (98 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
AGCTGGCCTTGACTCAGCACATTGGCACCTTCA
Done.