Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1613

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2659
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39


Found at i:980 original size:40 final size:39

Alignment explanation


    Indices: 914--1018  Score: 131
    Period size: 40  Copynumber: 2.6  Consensus size: 39

        904 ATCATATACT

                             *   *                 * 
        914 ATATTCATATACATTTATCATTATT-AAGAATTAATGTACC
          1 ATATTCATATACA-TTACCATCATTAAAG-ATTAATGTAAC

                       *                            
        954 ATATTCATATATATGTACCATCATTAAAGATTAATGTAAC
          1 ATATTCATATACAT-TACCATCATTAAAGATTAATGTAAC

                     *               
        994 ATATTCATACACATTACCATCATTA
          1 ATATTCATATACATTACCATCATTA

       1019 TTAAAGACTA


Statistics
Matches: 57,  Mismatches: 6, Indels: 5
        0.84            0.09        0.07

Matches are distributed among these distances:
  39   12  0.21
  40   42  0.74
  41    3  0.05

ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39


Consensus pattern (39 bp):   
ATATTCATATACATTACCATCATTAAAGATTAATGTAAC
Done.