genome.fa.s1615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1615
Parameters: 2 7 7 80 10 50 1000
Length:  41816

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924--968	21	2.1	21	84	8	56	53	4	20	22	1.63
2770--2800	15	2.1	15	93	0	53	48	16	22	12	1.80
4882--4906	13	1.9	13	100	0	50	36	16	16	32	1.90
11084--11110	4	6.8	4	100	0	54	77	0	0	22	0.76
13256--13669	130	3.2	130	82	6	480	35	12	24	27	1.91
13335--13461	51	2.5	51	86	2	164	34	10	25	29	1.89
13302--13669	131	2.8	128	84	4	477	35	12	24	28	1.91
15939--16068	49	2.6	50	91	2	201	40	15	16	27	1.89
16818--16867	22	2.4	22	84	15	63	34	20	0	46	1.51
20593--21094	97	5.2	97	79	8	440	21	27	14	36	1.92
20606--21077	63	7.4	64	76	8	342	20	27	15	36	1.92
20855--21066	96	2.2	96	82	5	257	22	25	14	37	1.92
20606--21077	33	14.8	34	73	13	303	20	27	15	36	1.92
21103--21667	34	17.0	33	70	15	233	22	30	10	36	1.88
21231--21419	33	5.7	33	80	8	197	20	29	10	39	1.86
21131--21345	118	1.8	118	86	7	312	20	30	11	36	1.89
21231--21419	67	2.9	68	84	7	239	20	29	10	39	1.86
21324--21509	93	2.0	95	83	8	238	25	28	8	37	1.86
21517--21620	27	3.7	27	75	12	109	22	33	11	32	1.90
21517--21634	27	4.2	27	71	10	83	22	33	11	33	1.89
21482--21667	59	3.1	59	79	6	214	22	32	10	34	1.88
21705--21807	32	3.2	32	85	5	129	32	30	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21805--22097	49	6.0	49	79	3	277	25	26	16	31	1.96
21795--22095	98	3.1	98	82	2	345	25	27	15	31	1.96
21813--22135	49	6.6	49	76	7	208	25	26	17	31	1.97
21884--22135	98	2.6	98	82	1	247	25	25	16	32	1.96
22152--22252	52	1.9	52	83	0	130	24	21	16	36	1.94
22172--22287	52	2.2	52	84	3	144	25	21	18	35	1.95
22347--22380	18	1.9	17	88	5	50	17	35	0	47	1.48
22237--22370	61	2.2	61	79	0	151	23	24	11	39	1.89
23037--23089	21	2.6	21	79	5	65	37	9	15	37	1.79
28580--28618	20	1.9	21	94	5	71	20	17	20	41	1.91
33085--33500	79	5.3	78	78	9	400	34	13	24	26	1.93
33085--33460	158	2.4	155	82	7	449	34	14	24	26	1.93
33085--33481	154	2.5	155	80	7	455	35	13	24	26	1.92
33987--34053	37	1.9	35	88	11	102	29	25	11	32	1.92
34512--34537	13	2.0	13	100	0	52	30	15	15	38	1.88
34492--34555	32	2.0	33	90	3	103	28	14	15	42	1.86
35233--35278	21	2.2	21	84	7	58	26	30	4	39	1.75
35650--35717	30	2.2	31	86	5	93	38	29	4	27	1.76
36531--36557	13	2.1	13	100	0	54	29	14	14	40	1.86
40294--40319	13	2.0	13	100	0	52	30	15	15	38	1.88
40274--40337	32	2.0	33	90	3	103	28	14	15	42	1.86

Tables:   1

The End!