Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1616
Parameters: 2 7 7 80 10 50 1000
Length:  28636

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1013--1039
10
2.7
10
100
0
54
77
22
0
0
0.76
5176--5299
52
2.4
51
94
1
212
28
17
18
35
1.94
5176--5319
52
2.8
51
88
5
202
29
17
18
34
1.94
5308--5332
13
1.9
13
100
0
50
36
16
16
32
1.90
5373--5439
33
2.0
33
88
0
98
40
13
11
34
1.81
5395--5419
13
1.9
13
100
0
50
32
16
16
36
1.90
6438--6756
47
6.7
49
82
10
380
31
17
25
25
1.97
6485--6748
137
1.9
136
88
5
399
31
17
25
25
1.97
6763--6952
57
3.3
57
79
7
197
20
18
28
32
1.96
6764--7168
30
13.9
28
73
15
188
24
17
29
28
1.97
6780--6961
86
2.1
85
83
8
237
22
17
29
31
1.96
6992--7164
29
5.9
29
80
6
161
24
18
30
26
1.98
6878--7159
121
2.4
121
78
6
267
26
17
29
26
1.97
8604--8727
1
124.0
1
73
0
86
3
3
8
85
0.81
8604--8728
17
6.9
17
80
13
117
3
3
8
84
0.83
18422--18448
10
2.7
10
100
0
54
77
22
0
0
0.76
22587--22710
52
2.4
51
94
1
212
28
17
18
35
1.94
22587--22730
52
2.8
51
88
5
202
29
17
18
34
1.94
22719--22743
13
1.9
13
100
0
50
36
16
16
32
1.90
22784--22850
33
2.0
33
88
0
98
40
13
11
34
1.81
22806--22830
13
1.9
13
100
0
50
32
16
16
36
1.90
27903--27963
19
3.0
20
83
6
79
44
18
13
24
1.85

Tables:   1

The End!