Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1617
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19532
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Found at i:1281 original size:21 final size:21
Alignment explanation
Indices: 1257--1313 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1247 AAAAAATTTA
1257 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
1278 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
1299 AATGTATCGATACAT
1 AATGTATCGATACAT
1314 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1393 original size:19 final size:19
Alignment explanation
Indices: 1369--1426 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
1359 AATTCAACAA
1369 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1388 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1403 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1420 TTTGTAT
1 TTTGTAT
1427 TGTATCGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.33
15 2 0.06
17 2 0.06
19 18 0.55
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1408 original size:13 final size:13
Alignment explanation
Indices: 1390--1414 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1380 ACATAAGTTT
1390 TGTATCGATACAA
1 TGTATCGATACAA
1403 TGTATCGATACA
1 TGTATCGATACA
1415 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1503 original size:33 final size:33
Alignment explanation
Indices: 1461--1527 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
1451 GCCAAGGAAA
* **
1461 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATTTTACAATGTATCGATACAT
1494 TGTATCGATACATTTTACAATGTATCGATACAT
1 TGTATCGATACATTTTACAATGTATCGATACAT
1527 T
1 T
1528 CAGGCATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATTTTACAATGTATCGATACAT
Found at i:1512 original size:20 final size:20
Alignment explanation
Indices: 1489--1527 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1479 TGTGTATCGA
*
1489 TACATTGTATCGATACATTT
1 TACAATGTATCGATACATTT
1509 TACAATGTATCGATACATT
1 TACAATGTATCGATACATT
1528 CAGGCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (20 bp):
TACAATGTATCGATACATTT
Found at i:1525 original size:13 final size:13
Alignment explanation
Indices: 1481--1507 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1471 CATTTTTCTG
1481 TGTATCGATACAT
1 TGTATCGATACAT
1494 TGTATCGATACAT
1 TGTATCGATACAT
1507 T
1 T
1508 TTACAATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4080 original size:104 final size:103
Alignment explanation
Indices: 3927--4307 Score: 393
Period size: 104 Copynumber: 3.6 Consensus size: 103
3917 TTATTTTCGA
* * *
3927 GGGGATACTCCAACTCCGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTATC-TTAAAACACCAATTTTTCCACAATCGAGGATACTCCAA
3992 TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
65 TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
*
4031 GGGGATACTCCAACTCCGATTTTAT-TTCCAAAAATACCAATTTTT-CACAATCGAGGATACTCC
1 GGGGATACTCCAACTCCGATTTTATCTT---AAAACACCAATTTTTCCACAATCGAGGATACTCC
* * * * ** * *
4094 AA-CCTCG--TTATTTCATCGGGGATACTCCAA--CCCCGTTACTTTC
63 AATCCTGGTTTTATTT--TC---AAAACGCCAATTTTCCTTTA--ATC
* * * *
4137 GAGGGGATACTCCAACTCTGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCC
1 --GGGGATACTCCAACTCCGATTTTATC-TTAAAACACCAATTTTTCCACAATCGAGGATACTCC
4202 AATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
63 AATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
*
4243 GGGGATACTCCAACTCCGATTTTAT-TTCCAAAAATACCAATTTTT-CACAATCGAGGATACTCC
1 GGGGATACTCCAACTCCGATTTTATCTT---AAAACACCAATTTTTCCACAATCGAGGATACTCC
4306 AA
63 AA
4308 CCTCGTTATT
Statistics
Matches: 224, Mismatches: 30, Indels: 46
0.75 0.10 0.15
Matches are distributed among these distances:
101 6 0.03
102 4 0.02
103 6 0.03
104 90 0.40
105 26 0.12
106 18 0.08
107 13 0.06
108 47 0.21
109 6 0.03
110 2 0.01
111 6 0.03
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (103 bp):
GGGGATACTCCAACTCCGATTTTATCTTAAAACACCAATTTTTCCACAATCGAGGATACTCCAAT
CCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
Found at i:4116 original size:28 final size:30
Alignment explanation
Indices: 4080--4152 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 30
4070 ATTTTTCACA
* *
4080 ATCGAGGATACTCCAACCTCGTTA-TTTC-
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
4108 ATCGGGGATACTCCAACCCCGTTACTTTCG
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
4138 A--GGGGATACTCCAAC
1 ATCGGGGATACTCCAAC
4153 TCTGGTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 36 0.88
29 4 0.10
30 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCGTTACTTTCG
Found at i:4194 original size:212 final size:212
Alignment explanation
Indices: 3812--4375 Score: 995
Period size: 212 Copynumber: 2.6 Consensus size: 212
3802 AATTCTCCAC
* * *
3812 AATCGAGGATATTCCAACTCCGATTTTATTTCCAAAAAAAATACCAATTTCTTCACAATCGGGGA
1 AATCGGGGATACTCCAACTCCGATTTTATTTCC---AAAAATACCAATTT-TTCACAATCGAGGA
* * *
3877 TACTCCAACCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAC
62 TACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAAC
3941 TCCGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTT
127 TCCGGTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTT
4006 TCAAAACGCCAATTTTCCTTT
192 TCAAAACGCCAATTTTCCTTT
4027 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
*
4092 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCTG
66 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCCG
4157 GTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAA
131 GTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAA
4222 AACGCCAATTTTCCTTT
196 AACGCCAATTTTCCTTT
4239 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
* *
4304 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCG
66 CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCCG
*
4369 GCTTTAT
131 GTTTTAT
4376 TCCCAAAATA
Statistics
Matches: 337, Mismatches: 11, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
211 28 0.08
212 278 0.82
215 31 0.09
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (212 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACT
CCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACTCCG
GTTTTATCGTTAAAACACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAA
AACGCCAATTTTCCTTT
Found at i:4308 original size:52 final size:51
Alignment explanation
Indices: 3927--4308 Score: 249
Period size: 52 Copynumber: 7.3 Consensus size: 51
3917 TTATTTTCGA
*
3927 GGGGATACTCCAACTCCGGTTTTATCGTT--AAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGGTTTTAT--TTCCAAAACACCAATTTTT-CACAATC
* * * **
3979 GGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTATTTCCAAAACACCAATTTTTC-ACAATC
* *
4031 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACTCCGGTTTTATTTCC-AAAACACCAATTTTTCACAATC
* * ***** * * *** **
4083 GAGGATACTCCAAC-CTCGTTATTTCATCGGGGATACTCCAACCCCGTT-ACTTTC
1 GGGGATACTCCAACTC-CGGT-TTT-ATTTCCAAAACACCAA--TTTTTCACAATC
* *
4137 GAGGGGATACTCCAACTCTGGTTTTATCGTT--AAAACACTAATTTTTCCACAATC
1 --GGGGATACTCCAACTCCGGTTTTAT--TTCCAAAACACCAATTTTT-CACAATC
* * * **
4191 GGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTATTTCCAAAACACCAATTTTTC-ACAATC
* *
4243 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACTCCGGTTTTATTTCC-AAAACACCAATTTTTCACAATC
*
4295 GAGGATACTCCAAC
1 GGGGATACTCCAAC
4309 CTCGTTATTT
Statistics
Matches: 251, Mismatches: 55, Indels: 48
0.71 0.16 0.14
Matches are distributed among these distances:
50 4 0.02
51 8 0.03
52 159 0.63
53 41 0.16
54 18 0.07
55 5 0.02
56 15 0.06
57 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTTCACAATC
Found at i:4328 original size:28 final size:28
Alignment explanation
Indices: 4292--4368 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
4282 ATTTTTCACA
* * *
4292 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
4320 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
4348 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
4369 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:16978 original size:1 final size:1
Alignment explanation
Indices: 16905--16961 Score: 78
Period size: 1 Copynumber: 57.0 Consensus size: 1
16895 CCTTCTCTTC
* * * *
16905 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAACAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16962 GAGAGAAAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.93, C:0.05, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:18048 original size:64 final size:65
Alignment explanation
Indices: 17950--18078 Score: 226
Period size: 64 Copynumber: 2.0 Consensus size: 65
17940 TTTTAGTCCC
17950 CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCA
1 CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCA
18014 G
65 G
*
18015 CAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAG
1 CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAG
18079 GACACCTTTC
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
63 3 0.05
64 42 0.68
65 17 0.27
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.18
Consensus pattern (65 bp):
CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAG
Found at i:18120 original size:54 final size:54
Alignment explanation
Indices: 18015--19094 Score: 1624
Period size: 53 Copynumber: 20.2 Consensus size: 54
18005 CAAAGAGCAG
18015 CAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCT
18069 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
*
18123 C---GAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCT
*
18174 CAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
1 CAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCT
*
18229 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTCCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
18283 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
*
18336 CAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
1 CAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCT
18391 CAAAGAGCAGGACACC-TTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCT
*
18445 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTCCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
18499 CAAAGAGCAGGACACC-TTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
18552 CAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTTC---CCT
1 CAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA--TTTTCAGTCCT
18605 CAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
*
18658 CAAAGAGCAGGACACC-TTCAAAGCCCACACAAGTTGGTGGCA-TTTCAGTCCC
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
*
18710 CAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC-
1 CAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCT
*
18764 CAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGC-TTTCCAGTCCT
1 CAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
*
18817 CAAAGAGCAGGACACCTTTCAAAGCCCACAC-AGTTGGTGGCATTTCCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
18870 CAAAGA-CAGGACACCTTTCAAAGCCCACAC-AGTTGGTGGCATTTTCCAGT-CT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAGTCCT
** * *
18922 CAAAGAGCAGGACACCTCTT-AAAGCCCACAC-AGTTGGTGGCACCTTCATTCCC
1 CAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
* *
18975 CAAAGAGCAGGACA-CTTTCAAAG-CCACACAAGTGGGTGGCACCTTTCAGTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCT
* * * *
19028 CAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTACTCCT
1 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCT
*
19083 CAATGAGCAGGA
1 CAAAGAGCAGGA
19095 TACAATTTTT
Statistics
Matches: 963, Mismatches: 26, Indels: 73
0.91 0.02 0.07
Matches are distributed among these distances:
50 28 0.03
51 34 0.04
52 137 0.14
53 310 0.32
54 243 0.25
55 206 0.21
56 5 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (54 bp):
CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
Found at i:18375 original size:107 final size:108
Alignment explanation
Indices: 18015--19094 Score: 1610
Period size: 105 Copynumber: 10.1 Consensus size: 108
18005 CAAAGAGCAG
*
18015 CAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGG
1 CAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGG
*
18080 ACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
66 ACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCT
18123 C---GAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAG
1 CAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCAG
18184 GACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
65 GACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCT
18229 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTCCAGTCCTCAAAGAGCAG
1 CAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAG
18293 GACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTCAGTCCT
65 GACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCT
18336 CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCA
1 CAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCA
*
18400 GGACACC-TTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCT
64 GGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCT
18445 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTCCAGTCCTCAAAGAGCAG
1 CAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAG
*
18509 GACACC-TTCAAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
65 GACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCT
*
18552 CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTC---CCTCAAAGAGCA
1 CAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCA
*
18614 GGACACCTTT-AAAGCCCACACAAGTTGGTGGCATTTTCAGTCCT
64 GGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCT
* *
18658 CAAAGAGCAGGACACCTTCAAAGCCCACACAAGTTGGTGGCA-TTT-CAGTCCCCAAAGAGCAGG
1 CAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGG
18721 ACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC-
66 ACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCT
18764 CAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGG--CTTTCCAGTCCTCAAAGAGCAG
1 CAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAG
18827 GACACCTTTCAAAGCCCACAC-AGTTGGTGGCA-TTTCCAGTCCT
65 GACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCT
*
18870 CAAAGA-CAGGACACCTTTCAAAGCCCACAC-AGTTGGTGGCATTTTCCAGT-CTCAAAGAGCAG
1 CAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAG
* * *
18932 GACACCTCTT-AAAGCCCACAC-AGTTGGTGGCACCTTCATTCCC
65 GACACCT-TTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCT
*
18975 CAAAGAGCAGGACA-CTTTCAAAG-CCACACAAGTGGGTGGCACCTTT-CAGTCCTCAAAGAGCA
1 CAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCA
* * * *
19037 GGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTACTCCT
64 GGACACCTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCAGTCCT
*
19083 CAATGAGCAGGA
1 CAAAGAGCAGGA
19095 TACAATTTTT
Statistics
Matches: 909, Mismatches: 20, Indels: 86
0.90 0.02 0.08
Matches are distributed among these distances:
102 1 0.00
103 3 0.00
104 20 0.02
105 232 0.26
106 201 0.22
107 205 0.23
108 108 0.12
109 116 0.13
110 23 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (108 bp):
CAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGG
ACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCT
Done.