Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1618
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97438
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Found at i:7168 original size:43 final size:42
Alignment explanation
Indices: 7031--7993 Score: 265
Period size: 43 Copynumber: 22.6 Consensus size: 42
7021 ATGAGGCAGG
* * * *
7031 CTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTTGGAAAGT
* * ** *
7073 CTCCAAGTTCAAAG-TCGACAGGTAGACTTTA-GAT-GAAGCAGT
1 CTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGGTTGGAA--AGT
* *
7115 CTCCAGGGTCAAAGCTGACAAGCAGACTGAAAGGTTGGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACT-AAAGGTTGGAAAGT
* * * *
7158 CTCCAAGGTCAAAGCTGACAGGCAGATTTAGGGATAGGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGG-TTGGAAAGT
* * ** * **
7201 CTTC-AGCGTCAAAG-TCAACAGGCAGACTTTA-GATGAGGCAGT
1 CTCCAAG-GTCAAAGCT-GACAGGCAGACTAAAGGTTG-GAAAGT
* * * ** * **
7243 CTCTAGGGTCAAAGCCGACAGTTAGACTGAAGGGTAAGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACT-AAAGGTTGGAAAGT
* * * * *
7286 CTCTAGGGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGG-TTGGAAAGT
* * ** * * **
7329 CTCTAGGGTCAAAGCCAACAAGTAGACTAAAGGGTAAGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAA-GGTTGGAAAGT
* * * * * *
7372 CTCTAGGGTCAAAGCTGACAGACAGACTTAAGGGTAGAAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGAC-TAAAGGTTGGAAAGT
* * * * * * *
7415 AT-CTAGGTCAAAG-TCAACAGGCAAACTTAGGGATAGGAAAGT
1 CTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGG-TTGGAAAGT
* * * ** * **
7457 CT-CTAGGATCAAAGCCGACAGGTAGACTTTA-GATGAGGCAGT
1 CTCCAAGG-TCAAAGCTGACAGGCAGACTAAAGGTTG-GAAAGT
* * *
7499 CTCCAGGGTCAAAG-TCGACAGGCAAACTAAAGGGTAGGAAAGT
1 CTCCAAGGTCAAAGCT-GACAGGCAGACTAAA-GGTTGGAAAGT
* * ** * ** *
7542 CTCTAAGGTCAAAGCCGACAGGCAGACTTTA-GATGAGGCATT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTTG-GAAAGT
* * * * *
7584 CTCCATGGGTCAAAG-TCGATAGGTAGACTGAAGGGTAGGAAAGT
1 CTCCA-AGGTCAAAGCT-GACAGGCAGACT-AAAGGTTGGAAAGT
* * * * * * *
7628 CTCTC--GGTCAAAGCTGATAGGCAAAATTAGGGATAGAAAAGT
1 CTC-CAAGGTCAAAGCTGACAGGCAGACTAAAGG-TTGGAAAGT
* * * ** * **
7670 CTTCAAGGTCAAAGCCGACAGGCAAACTTTA-GATGAGGCAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTTG-GAAAGT
* * * *
7712 CTCTAGGGTCAAAGCTGACAGGCAGACTGAAGGGTAGGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACT-AAAGGTTGGAAAGT
* * * *
7755 TTCCAGGGTCAAAGCTGACGGGTAGACTTAAAGG-TGAAGAAA-T
1 CTCCAAGGTCAAAGCTGACAGGCAGAC-TAAAGGTTG--GAAAGT
* * * * * * *
7798 CTCCAGGGTCAAAG-TCGAAAGACAGACTTAGGGATAGAAAAGT
1 CTCCAAGGTCAAAGCT-GACAGGCAGACTAAAGG-TTGGAAAGT
* * * * * * * *
7841 CTCTAGGGTCAAAGCCGATAGGCAAACTTAGGGATAGGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGG-TTGGAAAGT
* * * * * *
7884 CTCC-AGAGTTAAAGCCGATAGGCAGACTTAAGGGTGAAAAAGT
1 CTCCAAG-GTCAAAGCTGACAGGCAGACTAAAGGTTG-GAAAGT
* * * * * *
7927 CTCCAGGGTCAATGCCGACAGGCAGACTTAGGGATAGGAAAGT
1 CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGG-TTGGAAAGT
* * **
7970 CTCTAGGGTCAAAGCCAACAGGCA
1 CTCCAAGGTCAAAGCTGACAGGCA
7994 AACTGAGGGT
Statistics
Matches: 679, Mismatches: 189, Indels: 105
0.70 0.19 0.11
Matches are distributed among these distances:
40 2 0.00
41 17 0.03
42 208 0.31
43 420 0.62
44 26 0.04
45 6 0.01
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (42 bp):
CTCCAAGGTCAAAGCTGACAGGCAGACTAAAGGTTGGAAAGT
Found at i:7228 original size:128 final size:127
Alignment explanation
Indices: 7031--7991 Score: 608
Period size: 128 Copynumber: 7.5 Consensus size: 127
7021 ATGAGGCAGG
* * * * * * *
7031 CTCCAAGGTCAAAGCCGACAGGCAGACTAAGGG-TAGAAAAGTCTCCAAGTTCAAAGTCGACAGG
1 CTCCAAGGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCT-CTAGGTCAAAGCCAACAGG
*
7095 TAGACTTTAGATGAAGCAGTCTCCAGGGTCAAAGCTGACA-AGCAGACTGAAAGGTTGGAAAGT
65 TAGACTTTAGATGAAGCAGTCTCCAGGGTCAAAGCTGACAGA-CAGACTGAAAGGTAGGAAAGT
* *
7158 CTCCAAGGTCAAAGCTGACAGGCAGATTTAGGGATAGGAAAGTCT-TCAGCGTCAAAGTCAACAG
1 CTCCAAGGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCTCT-AG-GTCAAAGCCAACAG
* * * * ** * *
7222 GCAGACTTTAGATGAGGCAGTCTCTAGGGTCAAAGCCGACAGTTAGACTGAAGGGTAAGAAAGT
64 GTAGACTTTAGATGAAGCAGTCTCCAGGGTCAAAGCTGACAGACAGACTGAAAGGTAGGAAAGT
* * *
7286 CTCTAGGGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAAG
1 CTCCAAGGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCTCTA-GGTCAAAGCCAACAGG
** * * * * * *
7351 TAGACTAAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCTGACAGACAGACTTAAGGGTAGAAAAGT
65 TAGACTTTAGATG-AAG-CAGTCTCCAGGGTCAAAGCTGACAGACAGACTGAAAGGTAGGAAAGT
* * * * *
7415 AT-CTAGGTCAAAG-TCAACAGGCAAACTTAGGGATAGGAAAGTCTCTAGGATCAAAGCCGACAG
1 CTCCAAGGTCAAAGCT-GACAGGCAGACTTAGGGATAGGAAAGTCTCTAGG-TCAAAGCCAACAG
* * *
7478 GTAGACTTTAGATGAGGCAGTCTCCAGGGTCAAAG-TCGACAGGCAAACT-AAAGGGTAGGAAAG
64 GTAGACTTTAGATGAAGCAGTCTCCAGGGTCAAAGCT-GACAGACAGACTGAAA-GGTAGGAAAG
7541 T
127 T
* * * * * * * *
7542 CTCTAAGGTCAAAGCCGACAGGCAGACTTTA--GATGAGG-CATTCTCCATGGGTCAAAGTCGAT
1 CTCCAAGGTCAAAGCTGACAGGCAGAC-TTAGGGAT-AGGAAAGTCT-C-TAGGTCAAAGCCAAC
** * * * * * * *
7604 AGGTAGACTGAAGGGTAGGAA--AGTCTCTC--GGTCAAAGCTGATAGGCAAAAT-TAGGGATAG
62 AGGTAGACTTTA--G-ATGAAGCAGTCTC-CAGGGTCAAAGCTGACAGACAGACTGAAAGG-TAG
*
7664 AAAAGT
122 GAAAGT
* * * * **
7670 CTTCAAGGTCAAAGCCGACAGGCAAACTTTA--GATGAGG-CAGTCTCTAGGGTCAAAGCTGACA
1 CTCCAAGGTCAAAGCTGACAGGCAGAC-TTAGGGAT-AGGAAAGTCTCTA-GGTCAAAGCCAACA
* ** * * * ** * *
7732 GGCAGACTGAAGGGTAGGAA--AGTTTCCAGGGTCAAAGCTGACGGGTAGACTTAAAGGTGAAGA
63 GGTAGACTTTA--G-ATGAAGCAGTCTCCAGGGTCAAAGCTGACAGACAGACTGAAAGGT-AGGA
7795 AA-T
124 AAGT
* * * * * *
7798 CTCCAGGGTCAAAG-TCGAAAGACAGACTTAGGGATAGAAAAGTCTCTAGGGTCAAAGCCGATAG
1 CTCCAAGGTCAAAGCT-GACAGGCAGACTTAGGGATAGGAAAGTCTCTA-GGTCAAAGCCAACAG
* * * * * * * * * *
7862 GCAAAC-TTAGGGATAGGAA--AGTCTCCAGAGTTAAAGCCGATAGGCAGACTTAAGGGT-GAAA
64 GTAGACTTTA--GAT--GAAGCAGTCTCCAGGGTCAAAGCTGACAGACAGACTGAAAGGTAG-GA
7923 AAGT
124 AAGT
* * *
7927 CTCCAGGGTCAATGCCGACAGGCAGACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAGG
1 CTCCAAGGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCTCTA-GGTCAAAGCCAACAGG
7992 CAAACTGAGG
Statistics
Matches: 674, Mismatches: 121, Indels: 76
0.77 0.14 0.09
Matches are distributed among these distances:
126 5 0.01
127 122 0.18
128 357 0.53
129 185 0.27
130 2 0.00
131 3 0.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (127 bp):
CTCCAAGGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCTCTAGGTCAAAGCCAACAGGT
AGACTTTAGATGAAGCAGTCTCCAGGGTCAAAGCTGACAGACAGACTGAAAGGTAGGAAAGT
Found at i:7491 original size:256 final size:255
Alignment explanation
Indices: 7037--7993 Score: 915
Period size: 256 Copynumber: 3.7 Consensus size: 255
7027 CAGGCTCCAA
* * * *
7037 GGTCAAAGCCGACAGGCAGACTAAGGG-TAGAAAAGTCTCCAAGTTCAAAGTCGACAGGTAGACT
1 GGTCAAAGCCGACAGGCAGACTTAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGACAGGTAGAC-
* * * * * * *
7101 TTA-GATGAAG-CAGTCTCCAGGGTCAAAGCTGACA-AGCAGACTGAAAGGTTGGAAAGTCTCCA
65 TAAGGGT-AAGAAAGTCTCCAGGGTCAAAGCTGACAGA-CAGACTTAAGGGTAGAAAAGTCT-CA
* * * * *
7163 AGGTCAAAGCTGACAGGCAGATTTAGGGATAGGAAAGTCT-TCAGCGTCAAAGTCAACAGGCAGA
127 AGGTCAAAGCCGACAGGCAAACTTAGGGATAGGAAAGTCTCT-AGGGTCAAAGCCAACAGGCAGA
* * *
7227 CTTTAGATGAGGCAGTCTCTAGGGTCAAAGCCGACAGTTAGACTGAAGGGTAAGAAAGTCTCTAG
191 CTTTAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGTAGACTAAAGGGTAAGAAAGTCTCTAG
* * * * *
7292 GGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAAGTAGACT
1 GGTCAAAGCCGACAGGCAGACTTAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGACAGGTAGACT
* * *
7357 AAAGGGTAAGAAAGTCTCTAGGGTCAAAGCTGACAGACAGACTTAAGGGTAGAAAAGTATCTAGG
66 -AAGGGTAAGAAAGTCTCCAGGGTCAAAGCTGACAGACAGACTTAAGGGTAGAAAAGTCTCAAGG
* * * * *
7422 TCAAAGTCAACAGGCAAACTTAGGGATAGGAAAGTCTCTAGGATCAAAGCCGACAGGTAGACTTT
130 TCAAAGCCGACAGGCAAACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAGGCAGACTTT
* * * * *
7487 AGATGAGGCAGTCTCCAGGGTCAAAGTCGACAGGCAAACTAAAGGGTAGGAAAGTCTCTAA
195 AGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGTAGACTAAAGGGTAAGAAAGTCTCTAG
** * * *
7548 GGTCAAAGCCGACAGGCAGACTTTA--GAT-GAGGCATTCTCCATGGGTCAAAGTCGATAGGTAG
1 GGTCAAAGCCGACAGGCAGAC-TTAGGGATAGA-AAAGTCTCCA-GGGTCAAAGCCGACAGGTAG
* * * * *
7610 ACTGAAGGGTAGGAAAGTCTCTC--GGTCAAAGCTGATAGGCAAAATT-AGGGATAGAAAAGTCT
63 ACT-AAGGGTAAGAAAGTCTC-CAGGGTCAAAGCTGACAGACAGACTTAAGGG-TAGAAAAGTC-
* **
7672 TCAAGGTCAAAGCCGACAGGCAAACTTTA--GATGAGG-CAGTCTCTAGGGTCAAAGCTGACAGG
124 TCAAGGTCAAAGCCGACAGGCAAAC-TTAGGGAT-AGGAAAGTCTCTAGGGTCAAAGCCAACAGG
** * * * * *
7734 CAGACTGAAG-GGTAGGAAAGTTTCCAGGGTCAAAGCTGACGGGTAGACTTAAA-GGTGAAGAAA
187 CAGACTTTAGATG-AGG-CAGTCTCCAGGGTCAAAGCCGACAGGTAGAC-TAAAGGGT-AAGAAA
*
7797 -TCTCCAG
248 GTCTCTAG
* * * * * * *
7804 GGTCAAAGTCGAAAGACAGACTTAGGGATAGAAAAGTCTCTAGGGTCAAAGCCGATAGGCAAACT
1 GGTCAAAGCCGACAGGCAGACTTAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGACAGGTAGACT
* * * * * * * *
7869 TAGGGATAGGAAAGTCTCCAGAGTTAAAGCCGATAGGCAGACTTAAGGGT-GAAAAAGTCTCCAG
66 AAGGG-TAAGAAAGTCTCCAGGGTCAAAGCTGACAGACAGACTTAAGGGTAG-AAAAGTCT-CAA
* *
7933 GGTCAATGCCGACAGGCAGACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAGGCA
128 GGTCAAAGCCGACAGGCAAACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAGGCA
7994 AACTGAGGGT
Statistics
Matches: 575, Mismatches: 97, Indels: 57
0.79 0.13 0.08
Matches are distributed among these distances:
254 6 0.01
255 107 0.19
256 310 0.54
257 117 0.20
258 35 0.06
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (255 bp):
GGTCAAAGCCGACAGGCAGACTTAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGACAGGTAGACT
AAGGGTAAGAAAGTCTCCAGGGTCAAAGCTGACAGACAGACTTAAGGGTAGAAAAGTCTCAAGGT
CAAAGCCGACAGGCAAACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAGGCAGACTTTA
GATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGTAGACTAAAGGGTAAGAAAGTCTCTAG
Found at i:8010 original size:86 final size:85
Alignment explanation
Indices: 7037--8011 Score: 663
Period size: 86 Copynumber: 11.4 Consensus size: 85
7027 CAGGCTCCAA
* * * * *
7037 GGTCAAAGCCGACAGGCAGACTAAGGG-TAGAAAAGTCTCCAAGTTCAAAGTCGACAGGTAGACT
1 GGTCAAAGCCGACAGGCAGACTTAGGGATA-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-
*
7101 TTA--GAT--GAAGCAGTCTCCAG
64 TTAGGGATAGGAA--AGTCTCTAG
* * * * * ** * * *
7121 GGTCAAAGCTGACAAGCAGACTGAAAGGTTGGAAAGTCTCCAAGGTCAAAGCTGACAGGCAGATT
1 GGTCAAAGCCGACAGGCAGACT-TAGGGATAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACT
7186 TAGGGATAGGAAAGTCT-TCAG
65 TAGGGATAGGAAAGTCTCT-AG
* * * *** * **
7207 CGTCAAAGTCAACAGGCAGACTTTA--GATGAGGCAGTCTCTAGGGTCAAAGCCGACAGTTAGAC
1 GGTCAAAGCCGACAGGCAGAC-TTAGGGAT-AAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
* *
7270 TGAAGGG-TAAGAAAGTCTCTAG
64 T-TAGGGATAGGAAAGTCTCTAG
* * * * * *
7292 GGTCAAAGCTGACAGGCAGACTTAGGGATAGGAAAGTCTCTAGGGTCAAAGCCAACAAGTAGACT
1 GGTCAAAGCCGACAGGCAGACTTAGGGATA-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACT
* *
7357 AAAGGG-TAAGAAAGTCTCTAG
65 -TAGGGATAGGAAAGTCTCTAG
* * * * * * *
7378 GGTCAAAGCTGACAGACAGACTTAAGGG-TAGAAAAGTATCTA-GGTCAAAGTCAACAGGCAAAC
1 GGTCAAAGCCGACAGGCAGACTT-AGGGATA-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
7441 TTAGGGATAGGAAAGTCTCTAG
64 TTAGGGATAGGAAAGTCTCTAG
* * *** * *
7463 GATCAAAGCCGACAGGTAGACTTTA--GATGAGGCAGTCTCCAGGGTCAAAGTCGACAGGCAAAC
1 GGTCAAAGCCGACAGGCAGAC-TTAGGGAT-AAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
* *
7526 TAAAGGG-TAGGAAAGTCTCTAA
64 T-TAGGGATAGGAAAGTCTCTAG
*** * * * *
7548 GGTCAAAGCCGACAGGCAGACTTTA--GATGAGGCATTCTCCATGGGTCAAAGTCGATAGGTAGA
1 GGTCAAAGCCGACAGGCAGAC-TTAGGGAT-AAAAAGTCTCCA-GGGTCAAAGCCGACAGGCAGA
* *
7611 CTGAAGGG-TAGGAAAGTCTCT-C
63 CT-TAGGGATAGGAAAGTCTCTAG
* * * * * * *
7633 GGTCAAAGCTGATAGGCAAAATTAGGGATAGAAAAGTCTTCAAGGTCAAAGCCGACAGGCAAACT
1 GGTCAAAGCCGACAGGCAGACTTAGGGATA-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-
*
7698 TTA--GATGAGG-CAGTCTCTAG
64 TTAGGGAT-AGGAAAGTCTCTAG
* * * * * * *
7718 GGTCAAAGCTGACAGGCAGACTGAAGGG-TAGGAAAGTTTCCAGGGTCAAAGCTGACGGGTAGAC
1 GGTCAAAGCCGACAGGCAGACT-TAGGGATA-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
*
7782 TTAAAGGTGA-A-GAAA-TCTCCAG
64 TT--AGG-GATAGGAAAGTCTCTAG
* * * * * *
7804 GGTCAAAGTCGAAAGACAGACTTAGGGATAGAAAAGTCTCTAGGGTCAAAGCCGATAGGCAAACT
1 GGTCAAAGCCGACAGGCAGACTTAGGGATA-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACT
*
7869 TAGGGATAGGAAAGTCTCCAG
65 TAGGGATAGGAAAGTCTCTAG
* * * *
7890 AGTTAAAGCCGATAGGCAGACTTAAGGG-TGAAAAAGTCTCCAGGGTCAATGCCGACAGGCAGAC
1 GGTCAAAGCCGACAGGCAGACTT-AGGGAT-AAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC
7954 TTAGGGATAGGAAAGTCTCTAG
64 TTAGGGATAGGAAAGTCTCTAG
* * *
7976 GGTCAAAGCCAACAGGCAAACTGAGGGTATAAAAAG
1 GGTCAAAGCCGACAGGCAGACTTAGGG-ATAAAAAG
8012 ATGAAGAAGT
Statistics
Matches: 719, Mismatches: 128, Indels: 86
0.77 0.14 0.09
Matches are distributed among these distances:
83 4 0.01
84 56 0.08
85 309 0.43
86 332 0.46
87 13 0.02
88 3 0.00
89 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.18
Consensus pattern (85 bp):
GGTCAAAGCCGACAGGCAGACTTAGGGATAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTT
AGGGATAGGAAAGTCTCTAG
Found at i:11451 original size:13 final size:13
Alignment explanation
Indices: 11433--11458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11423 TACACACAAG
11433 ATGTATCGATACA
1 ATGTATCGATACA
11446 ATGTATCGATACA
1 ATGTATCGATACA
11459 TCCCAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:11475 original size:33 final size:32
Alignment explanation
Indices: 11415--11481 Score: 107
Period size: 33 Copynumber: 2.1 Consensus size: 32
11405 CTTAACTGTT
*
11415 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
11447 TGTATCGATACATCCCAAAATGTATCGATACAA
1 TGTATCGATACA-CACAAAATGTATCGATACAA
11480 TG
1 TG
11482 GCATGTAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:17477 original size:13 final size:13
Alignment explanation
Indices: 17447--17477 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
17437 AATGAATGAA
*
17447 TTTGATGATTGAT
1 TTTGTTGATTGAT
17460 TTTGTTGATTGAT
1 TTTGTTGATTGAT
17473 TTTGT
1 TTTGT
17478 GTTATTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.61
Consensus pattern (13 bp):
TTTGTTGATTGAT
Found at i:17656 original size:13 final size:13
Alignment explanation
Indices: 17638--17663 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17628 ACAACATTCT
17638 TTGTATCGATACA
1 TTGTATCGATACA
17651 TTGTATCGATACA
1 TTGTATCGATACA
17664 AAGGGTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:24548 original size:33 final size:33
Alignment explanation
Indices: 24505--24571 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
24495 TTCAACGATT
24505 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
* *** *
24538 TGTATTGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
24571 T
1 T
24572 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:24630 original size:13 final size:13
Alignment explanation
Indices: 24612--24636 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24602 ATCACTTAAA
24612 TGTATCGATACAT
1 TGTATCGATACAT
24625 TGTATCGATACA
1 TGTATCGATACA
24637 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:24701 original size:52 final size:52
Alignment explanation
Indices: 24645--24773 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
24635 CACTGATCTT
* *
24645 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
24697 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
24749 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
24774 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:30121 original size:19 final size:20
Alignment explanation
Indices: 30096--30155 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
30086 CCAAAAATGC
*
30096 AACCAAAAAAAACCCAAAAA
1 AACCAAAAAAAACACAAAAA
30116 AA-CAAAAAAAA-ACAAAAA
1 AACCAAAAAAAACACAAAAA
30134 AACCCAAAAAAAACA-AAAAA
1 AA-CCAAAAAAAACACAAAAA
30154 AA
1 AA
30156 AGACAAACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
18 8 0.22
19 9 0.25
20 18 0.50
21 1 0.03
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (20 bp):
AACCAAAAAAAACACAAAAA
Found at i:30141 original size:28 final size:29
Alignment explanation
Indices: 30101--30156 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
30091 AATGCAACCA
30101 AAAAAAACCC-AAAAAAACAAAAAAAAAC
1 AAAAAAACCCAAAAAAAACAAAAAAAAAC
30129 AAAAAAACCCAAAAAAAACAAAAAAAAA
1 AAAAAAACCCAAAAAAAACAAAAAAAAA
30157 GACAAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (29 bp):
AAAAAAACCCAAAAAAAACAAAAAAAAAC
Found at i:30155 original size:10 final size:10
Alignment explanation
Indices: 30100--30170 Score: 72
Period size: 10 Copynumber: 6.9 Consensus size: 10
30090 AAATGCAACC
*
30100 AAAAAAAACC
1 AAAAAAAACA
*
30110 CAAAAAAACA
1 AAAAAAAACA
30120 AAAAAAAAC-
1 AAAAAAAACA
* *
30129 AAAAAAACCC
1 AAAAAAAACA
30139 AAAAAAAACAA
1 AAAAAAAAC-A
30150 AAAAAAAGACA
1 AAAAAAA-ACA
30161 AACAAAAAAC
1 AA-AAAAAAC
30171 GGGTCTAGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
9 8 0.16
10 24 0.47
11 12 0.24
12 7 0.14
ACGTcount: A:0.82, C:0.17, G:0.01, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:31925 original size:13 final size:13
Alignment explanation
Indices: 31864--31926 Score: 51
Period size: 13 Copynumber: 4.8 Consensus size: 13
31854 CTAGAAATGG
31864 TTGTCAAGAAA-T
1 TTGTCAAGAAACT
31876 TATCGTCAAG-AACTT
1 T-T-GTCAAGAAAC-T
* **
31891 TTGTCGAGAATGT
1 TTGTCAAGAAACT
31904 TTGTC-AGAAACT
1 TTGTCAAGAAACT
31916 TTGTCAAGAAA
1 TTGTCAAGAAA
31927 TTTTCATCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
12 11 0.28
13 19 0.47
14 8 0.20
15 2 0.05
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (13 bp):
TTGTCAAGAAACT
Found at i:31984 original size:28 final size:28
Alignment explanation
Indices: 31946--32262 Score: 413
Period size: 28 Copynumber: 11.3 Consensus size: 28
31936 ATACGACCCT
*
31946 TTTCAAAGCCCACAAGTCAGTCGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
31974 TTTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
32002 TTTCAAAGCCCCCAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
32030 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
32058 TTTTAAAGCCCACAA-ACTAGTGGCATCA
1 TTTCAAAGCCCACAAGTC-AGTGGCATCC
* * *
32086 TTTCAAAGCCCATAAGTCAGTGGCGTCA
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
32114 TTTCAAAGCCCACAAGTTAGTGGCA-CC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
32141 ATTTCAAAGCCCACAAGTTAGCGGCATCA
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
* **
32170 TTTCAAAGCCCACAAGTTAGTGGCACTTT
1 TTTCAAAGCCCACAAGTCAGTGGCA-TCC
*
32199 TTTCAAAGCCCACAAGTCAGCGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
32227 TTTCAAAGCCCACAAGTCAATGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
32255 TTTCAAAG
1 TTTCAAAG
32263 GCACCATTTA
Statistics
Matches: 255, Mismatches: 29, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
27 1 0.00
28 228 0.89
29 26 0.10
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCATCC
Found at i:32373 original size:32 final size:31
Alignment explanation
Indices: 32279--32389 Score: 124
Period size: 32 Copynumber: 3.7 Consensus size: 31
32269 TTTAAAAGCC
* *
32279 CACAAGTTAGTGGCA-TCATTTCAAACT-C-
1 CACAAGTTAGTGGCACTCTTTTCAAAGTCCA
* * *
32307 CACAAGTCAGTGGCAC-CCTTTCAAAGCCCA
1 CACAAGTTAGTGGCACTCTTTTCAAAGTCCA
*
32337 CACAAGTTAGTGGCAACTCTTTTTAAAGTCCA
1 CACAAGTTAGTGGC-ACTCTTTTCAAAGTCCA
32369 CACAAGTTAGTGGCAC-CTTTT
1 CACAAGTTAGTGGCACTCTTTT
32390 TTTTTAAGCC
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
28 22 0.31
29 1 0.01
30 18 0.26
31 4 0.06
32 25 0.36
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (31 bp):
CACAAGTTAGTGGCACTCTTTTCAAAGTCCA
Found at i:33402 original size:20 final size:21
Alignment explanation
Indices: 33371--33409 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
33361 TACATGTATG
33371 AATGTATTCGATACATTCTTC
1 AATGTATTCGATACATTCTTC
33392 AATGT-TTCGATACATTCT
1 AATGTATTCGATACATTCT
33410 ATCTTTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (21 bp):
AATGTATTCGATACATTCTTC
Found at i:33453 original size:71 final size:70
Alignment explanation
Indices: 33302--33457 Score: 168
Period size: 71 Copynumber: 2.2 Consensus size: 70
33292 TTTCACCCAG
* * * * *
33302 ATGTGTCGATACATTTTTTAATGTATCAATAAATTCTGTATTTTACCCAAATATATCGATACATG
1 ATGTATCGATACATTCTTCAATGTATCAATAAATTCTATATTTTACCCAAATATATCAATACATG
*
33367 TATGA
66 TATCA
* * * * * *
33372 ATGTATTCGATACATTCTTCAATGTTTCGATACATTCTATCTTTTTACCCATATGTATCAATACA
1 ATGTA-TCGATACATTCTTCAATGTATCAATAAATTCTAT-ATTTTACCCAAATATATCAATACA
* *
33437 TTTTTCA
64 TGTATCA
33444 ATGTATCGATACAT
1 ATGTATCGATACAT
33458 CTAGTTAAAA
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
70 4 0.06
71 37 0.53
72 29 0.41
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (70 bp):
ATGTATCGATACATTCTTCAATGTATCAATAAATTCTATATTTTACCCAAATATATCAATACATG
TATCA
Found at i:34762 original size:50 final size:48
Alignment explanation
Indices: 34661--34762 Score: 109
Period size: 50 Copynumber: 2.0 Consensus size: 48
34651 TGCCAAGGAA
** *
34661 ATGTATCGATACATTGATCTTTGTATCGATACATCTGGAATTTTACCCAT
1 ATGTATCGATACATTGATCAATGTATCGATACATCAGGAATTTT--CCAT
34711 ATGTATCGATACATT-ATTCAATGTATCGATACATACAGGTAAATTTT-CAT
1 ATGTATCGATACATTGA-TCAATGTATCGATACAT-CAGG--AATTTTCCAT
34761 AT
1 AT
34763 TTTGGACATT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
49 1 0.02
50 35 0.78
51 3 0.07
53 6 0.13
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (48 bp):
ATGTATCGATACATTGATCAATGTATCGATACATCAGGAATTTTCCAT
Found at i:40466 original size:24 final size:24
Alignment explanation
Indices: 40439--40490 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
40429 AAAATAATGT
40439 AAAAGTCAAAAGTAAAA-ACACAAAA
1 AAAAGTCAAAA--AAAACACACAAAA
**
40464 AAAAAACAAAAAAAACACACAAAA
1 AAAAGTCAAAAAAAACACACAAAA
40488 AAA
1 AAA
40491 GTGCAAAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 4 0.17
24 11 0.46
25 9 0.38
ACGTcount: A:0.79, C:0.13, G:0.04, T:0.04
Consensus pattern (24 bp):
AAAAGTCAAAAAAAACACACAAAA
Found at i:40468 original size:13 final size:13
Alignment explanation
Indices: 40452--40490 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
40442 AGTCAAAAGT
40452 AAAAACAC-AAAA
1 AAAAACACAAAAA
40464 AAAAA-ACAAAAA
1 AAAAACACAAAAA
*
40476 AAACACACAAAAA
1 AAAAACACAAAAA
40489 AA
1 AA
40491 GTGCAAAGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 2 0.08
12 13 0.54
13 9 0.38
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACACAAAAA
Found at i:40472 original size:11 final size:11
Alignment explanation
Indices: 40452--40490 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
40442 AGTCAAAAGT
*
40452 AAAAACACAAA
1 AAAAAAACAAA
40463 AAAAAAACAAA
1 AAAAAAACAAA
40474 AAAAACACACAAA
1 AAAAA-A-ACAAA
40487 AAAA
1 AAAA
40491 GTGCAAAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 15 0.60
12 1 0.04
13 9 0.36
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:40752 original size:12 final size:12
Alignment explanation
Indices: 40730--40763 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
40720 TTCTTTTCCC
40730 AACACAAAAAAAA
1 AACA-AAAAAAAA
*
40743 AAGAAAAAAAAA
1 AACAAAAAAAAA
40755 AACAAAAAA
1 AACAAAAAA
40764 TCTCGGTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 16 0.84
13 3 0.16
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (12 bp):
AACAAAAAAAAA
Found at i:41794 original size:30 final size:30
Alignment explanation
Indices: 41759--42039 Score: 237
Period size: 30 Copynumber: 9.3 Consensus size: 30
41749 TCTTCAAATC
*
41759 TCTCTTTTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * *
41789 TCTCTTTTCTAAGTCCATGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
41819 TCTTTTCTTCTAAGTCCACGACTCAGTGGCA
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCA
** *
41850 TCTCTTCCCAAAGTCCACGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
*
41880 TCTTTTCTTCAAAGTCCACGACTCAGTGGCAA
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGC-A
* * * *
41912 TCTCTTCTCAAAGTCTATGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
** * * *
41942 TCTCTTCCCAAAGTCGATGACTCTGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * *
41972 GCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCA
1 ----TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * * *
42006 -C-CCTTT-AAAGCCCACAACTCTGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
42033 -CTCTTTT
1 TCTCTTTT
42040 TCCTTTTAAG
Statistics
Matches: 208, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
27 21 0.10
28 8 0.04
30 83 0.40
31 66 0.32
32 6 0.03
34 24 0.12
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (30 bp):
TCTCTTTTCAAAGTCCACGACTCAGTGGCA
Found at i:41853 original size:61 final size:61
Alignment explanation
Indices: 41765--41971 Score: 290
Period size: 61 Copynumber: 3.4 Consensus size: 61
41755 AATCTCTCTT
* * *
41765 TTCAAAGTCCACAACTCAGTGGCATCTCTTTTCTAAGTCCATGACTTAGTGGCATCTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCATGACTTAGTGGCATCTTTTC
* * *
41826 TTCTAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCCACGACTTAGTGGCATCTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCATGACTTAGTGGCATCTTTTC
* *
41887 TTCAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCTATGACTTAGTGGCATCTCTTC
1 TTCAAAGTCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCATGACTTAGTGGCATCTTTTC
* * * *
41949 -CCAAAGTCGATGACTCTGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
41972 GCTTTTTCTT
Statistics
Matches: 130, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
60 1 0.01
61 95 0.73
62 34 0.26
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (61 bp):
TTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCATGACTTAGTGGCATCTTTTC
Found at i:42020 original size:27 final size:27
Alignment explanation
Indices: 41985--42038 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
41975 TTTTCTTTTC
*
41985 AAAGTCCACAACTCTGTGGCACCCTTT
1 AAAGCCCACAACTCTGTGGCACCCTTT
*
42012 AAAGCCCACAACTCTGTGGCACTCTTT
1 AAAGCCCACAACTCTGTGGCACCCTTT
42039 TTCCTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (27 bp):
AAAGCCCACAACTCTGTGGCACCCTTT
Found at i:42029 original size:61 final size:59
Alignment explanation
Indices: 41961--42628 Score: 270
Period size: 61 Copynumber: 10.7 Consensus size: 59
41951 AAAGTCGATG
* *
41961 ACTCTGTGGCAGCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCACCCTTTAAAGCCCACA
1 ACTCTGTGGCATCTTTTTCTTTT--AAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACA
* **
42022 ACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCTTTCAAAGTAC
1 ACTCTGTGGCA-TCTTTTT-CTTTTAAGTCCACAACTCCGTGGCA-C-----CCTTT-AAAGCCC
42087 ACA
57 ACA
* *
42090 ACTCTATGGCA-C----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
1 ACTCTGTGGCATCTTTTTCTTTTAAGTCCACAACTCCGTGGCACC-----C--TTTAAAGCCCAC
42150 A
59 A
* * * * *
42151 ACTCCGTGACACTCTTTTTCCTTTTAAGTCCATAACT-CGTGGCACCCTTTTAAGTCCACA
1 ACTCTGTGGCA-TCTTTTT-CTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACA
** * * * * *
42211 ACTCCATGGCACCTTTTTATTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTAAGTCC
1 ACTCTGTGGCATCTTTTT-CTTTT-AAGTCCACAACTCCGTGGCAC-------CCTTTAAAGCCC
42276 ACA
57 ACA
* * * * *
42279 ACTTTGTGGCA-C----CCTTTTAAGTCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACA
1 ACTCTGTGGCATCTTTTTCTTTTAAGTCCACAACTCCGTGGCA-C-----CCTTTAAAGCCCACA
** * * ** * * *
42339 ACTCCATGGCACCTTGTTCCTTTTAAGTCCATTACTCCATGGCACCCTTTTAAGTCCACA
1 ACTCTGTGGCATCTT-TTTCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACA
* * * ** *
42399 ACTCCGTGGCATCTTTTTCCTTTTCAGTCCTCAACTTTGTGGCACCTTTTTCGTTTCAAAGTCCA
1 ACTCTGTGGCATCTTTTT-CTTTTAAGTCCACAACTCCGTGGCACC-----C-TTT-AAAGCCCA
42464 CA
58 CA
* * * * *
42466 ACTCTATGGTAAC-----CTTTTCAGTCCACAACTCCGTGACACCTTTTTCTTTTTAAAGCCCAC
1 ACTCTGTGGCATCTTTTTCTTTTAAGTCCACAACTCCGTGGCACC-----C--TTTAAAGCCCAC
42526 A
59 A
* * * ** * *
42527 ACTCCGTGGCACTCTTTTTCCTTTTAAGTCTATAACTTTGTGGCACCCTTTTAAGTCCACA
1 ACTCTGTGGCA-TCTTTTT-CTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACA
*
42588 ACTCTATGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTG
1 ACTCTGTGGCATCTTTTT-CTTTTAAGTCCACAACTCCGTG
42629 AAACCTTGTT
Statistics
Matches: 477, Mismatches: 75, Indels: 111
0.72 0.11 0.17
Matches are distributed among these distances:
55 1 0.00
59 12 0.03
60 134 0.28
61 164 0.34
62 20 0.04
63 7 0.01
65 2 0.00
66 26 0.05
67 33 0.07
68 78 0.16
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.36
Consensus pattern (59 bp):
ACTCTGTGGCATCTTTTTCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACA
Found at i:42051 original size:95 final size:93
Alignment explanation
Indices: 41961--43434 Score: 941
Period size: 94 Copynumber: 15.6 Consensus size: 93
41951 AAAGTCGATG
* * * *
41961 ACTCTGTGGCAGCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCACCCTTTAAAGCCCACAACTC
1 ACTCCGTGGCACCTTTTTCTTTT--AAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTC
*
42026 TGTGGCACTCTTTTTCCTTTTAAGTCCACA
64 CGTGGCACTCTTTTTCCTTTTAAGTCCACA
* * * *
42056 ACTCTGTGGCACCTTTTTCCTTTCAAAGTACACAACTCTATGGCACCCTTTTAAGTCCACAACTC
1 ACTCCGTGGCACCTTTTT-CTTT-TAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTC
* *
42121 CGTGGCAC-CTTTTTCTTTTTAAAGCCCACA
64 CGTGGCACTCTTTTTCCTTTT-AAGTCCACA
* *
42151 ACTCCGTGACACTCTTTTTCCTTTTAAGTCCATAACTC-GTGGCACCCTTTTAAGTCCACAACTC
1 ACTCCGTGGCAC-CTTTTT-CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTC
* ** *
42215 CATGGCAC-CTTTTTATTTTTAAAGCCCACA
64 CGTGGCACTCTTTTTCCTTTT-AAGTCCACA
* *
42245 ACTCCGTGGCACTTTTTTTCCTTTTAAGTCCACAACTTTGTGGCACCCTTTTAAGTCCACAACTC
1 ACTCCGTGGCAC-CTTTTT-CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTC
*
42310 TGTGGCA-TCTTTTTCCTTTTAAGTCCACA
64 CGTGGCACTCTTTTTCCTTTTAAGTCCACA
* * ** **
42339 ACTCCATGGCACCTTGTTCCTTTTAAGTCCATTACTCCATGGCACCCTTTTAAGTCCACAACTCC
1 ACTCCGTGGCACCTT-TTTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCC
* *
42404 GTGGCA-TCTTTTTCCTTTTCAGTCCTCA
65 GTGGCACTCTTTTTCCTTTTAAGTCCACA
** * * * * *
42432 ACTTTGTGGCACCTTTTTCGTTTCAAAGTCCACAACTCTATGGTAACCTTTTCAGTCCACAACTC
1 ACTCCGTGGCACCTTTTTC-TTT-TAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTC
* * *
42497 CGTGACAC-CTTTTTCTTTTTAAAGCCCACA
64 CGTGGCACTCTTTTTCCTTTT-AAGTCCACA
* * *
42527 ACTCCGTGGCACTCTTTTTCCTTTTAAGTCTATAACTTTGTGGCACCCTTTTAAGTCCACAACTC
1 ACTCCGTGGCAC-CTTTTT-CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTC
**
42592 TATGGCA-TCTTTTTCCTTTTAAGTCCACA
64 CGTGGCACTCTTTTTCCTTTTAAGTCCACA
** * ** * *
42621 ACTCCGTGAAACCTTGTTCCTTTTAAGTCCATGACTCCGTTGCACCTTCTTCTTTTTAAAG-CGC
1 ACTCCGTGGCACCTT-TTTCTTTTAAGTCCACAACTCTGTGGCA-C--C--C-TTTT-AAGTC-C
* * * *
42685 A-AACTCTGAGCCACTCCTTTTCCTTTTAAGTCCACA
57 ACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACA
* * * **
42721 ACCCCGTGGCACC-----CTTTTAAGTCCATAACTCTGTGGCACTTTTTTCTTTTTAAGTCCATG
1 ACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACTCTGTGGCAC------CCTTTTAAGTCCACA
*
42781 ACTCTGTGGCAC-CTTTTT-CTTTTCAATGTCCACA
60 ACTCCGTGGCACTCTTTTTCCTTTT-AA-GTCCACA
** * * **
42815 ACTTTGTGGCA-C----ACTTTTAAGTCCGCAACTCAATGGCACCTTTTCTTTTTGAAAG-CCAG
1 ACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACTCTGTGGCACC----C-TTTT--AAGTCCA-
* * *
42874 CAATTCCGTGGCACTCTTTTTCCTTTTTAGTCCATA
58 CAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACA
* ** **
42910 ACTTCGTGGCACC-----CTTTTAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAGTCCATG
1 ACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACTCTGTGGCACC-----C-TTTTAAGTCCACA
*
42970 ACTCTGTGGCAC-C----T--TTTTAAGTCCACA
60 ACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACA
* *
42997 ACTCTGCGGCACCTTTTTCTTTTTAAAG-CCTACAACTCTGTGGCACTCTTTTTCCTTTTAAGTC
1 ACTCCGTGGCACCTTTTTC-TTTT-AAGTCC-ACAACTCTGTGGCA--C-----CCTTTTAAGTC
* *
43061 CACAACTCTGTCGCA--C-----CCTTTTAAGTCCACA
56 CACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACA
* * * *
43092 ACTCCGTGGCATCTTTTTCCTTTTAAGTCTACAACTTTGTGGCACCTTTTTCTTTTTAAAGTTCA
1 ACTCCGTGGCACCTTTTT-CTTTTAAGTCCACAACTCTGTGGCACC-----C-TTTT-AAGTCCA
* *
43157 CAACTCTGTGGCA--C-----CCTTTTAAGTCCATA
58 CAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACA
* * * * * *
43186 ACTCTGTGGCA-CATTTTCTTTTTAAAGCCCACAACTCCGTGGCAACCTTTTAAGTCCATAACTC
1 ACTCCGTGGCACCTTTTTC-TTTT-AAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTC
*
43250 CGTGGTA-TCTTTTTCCTTTTAAGTCCACA
64 CGTGGCACTCTTTTTCCTTTTAAGTCCACA
* * * *
43279 ACTCTGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTTAAGTCCACG
1 ACTCCGTGGCACCTT-TTTCTTTTAAGTCCACAACTCTGTGGCACC----C-TTTTAAGTCCACA
* * * *
43344 ACTCTGTGGCACCCTTTTCCCTTTTAAGCCCAC-
60 ACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACA
* * * **
43377 ACTTCCATGGCATCCCTTTTTCTTGTAAGTCTACAACTCCATGGCA-CC-TTTAAGTCCA
1 AC-TCCGTGGCA--CCTTTTTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCA
43435 ATATCGCTAG
Statistics
Matches: 1129, Mismatches: 159, Indels: 184
0.77 0.11 0.12
Matches are distributed among these distances:
87 38 0.03
88 6 0.01
89 2 0.00
92 12 0.01
93 199 0.18
94 379 0.34
95 309 0.27
96 46 0.04
97 10 0.01
98 23 0.02
99 40 0.04
100 60 0.05
101 5 0.00
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.37
Consensus pattern (93 bp):
ACTCCGTGGCACCTTTTTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCG
TGGCACTCTTTTTCCTTTTAAGTCCACA
Found at i:42077 original size:33 final size:33
Alignment explanation
Indices: 42007--43427 Score: 936
Period size: 33 Copynumber: 44.9 Consensus size: 33
41997 TCTGTGGCAC
* *
42007 CCTTTAAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCAC-CTTTTT
42041 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * *
42074 CCTTTCAAAGTACACAACTCTATGGCA-C-----
1 CCTTT-TAAGTCCACAACTCTGTGGCACCTTTTT
*
42102 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * * *
42135 CTTTTTAAAGCCCACAACTCCGTGACACTCTTTTT
1 CCTTTT-AAGTCCACAACTCTGTGGCAC-CTTTTT
*
42170 CCTTTTAAGTCCATAACTC-GTGGCA-C-----
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
**
42196 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
** * * *
42229 ATTTTTAAAGCCCACAACTCCGTGGCACTTTTTTT
1 CCTTTT-AAGTCCACAACTCTGTGGCAC-CTTTTT
*
42264 CCTTTTAAGTCCACAACTTTGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
*
42291 CCTTTTAAGTCCACAACTCTGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
** *
42324 CCTTTTAAGTCCACAACTCCATGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
** **
42357 CCTTTTAAGTCCATTACTCCATGGCA-C-----
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* *
42384 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * *
42417 CCTTTTCAGTCCTCAACTTTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * * *
42450 CGTTTCAAAGTCCACAACTCTATGGTAACC-TTTT
1 CCTTT-TAAGTCCACAACTCTGTGG-CACCTTTTT
* *
42484 -C-----AGTCCACAACTCCGTGACACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * *
42511 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCTGTGGCAC-CTTTTT
* * *
42546 CCTTTTAAGTCTATAACTTTGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* *
42573 CCTTTTAAGTCCACAACTCTATGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* ** *
42606 CCTTTTAAGTCCACAACTCCGTGAAACCTTGTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
** * * *
42639 CCTTTTAAGTCCATGACTCCGTTGCACCTTCTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * * *
42672 CTTTTTAAAG-CGCA-AACTCTGAGCCACTCCTTTT
1 CCTTTT-AAGTC-CACAACTCTGTGGCAC-CTTTTT
* *
42706 CCTTTTAAGTCCACAACCCCGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* *
42733 CCTTTTAAGTCCATAACTCTGTGGCACTTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* **
42766 CTTTTTAAGTCCATGACTCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
*
42799 -CTTTTCAATGTCCACAACTTTGTGGCA-C-----
1 CCTTTT-AA-GTCCACAACTCTGTGGCACCTTTTT
* * **
42827 ACTTTTAAGTCCGCAACTCAATGGCACC-TTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * *
42859 CTTTTTGAAAG-CCAGCAATTCCGTGGCACTCTTTTT
1 CCTTTT--AAGTCCA-CAACTCTGTGGCAC-CTTTTT
* *
42895 CCTTTTTAGTCCATAACT-TCGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCT-GTGGCACCTTTTT
**
42922 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* **
42955 CTTTTTAAGTCCATGACTCTGTGGCACC----T
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
*
42984 --TTTTAAGTCCACAACTCTGCGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
*
43015 CTTTTTAAAG-CCTACAACTCTGTGGCACTCTTTTT
1 CCTTTT-AAGTCC-ACAACTCTGTGGCAC-CTTTTT
*
43050 CCTTTTAAGTCCACAACTCTGTCGCA-C-----
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* *
43077 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* *
43110 CCTTTTAAGTCTACAACTTTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* *
43143 CTTTTTAAAGTTCACAACTCTGTGGCA-C-----
1 CCTTTT-AAGTCCACAACTCTGTGGCACCTTTTT
* *
43171 CCTTTTAAGTCCATAACTCTGTGGCA-CATTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * * *
43203 CTTTTTAAAGCCCACAACTCCGTGGCA------A
1 CCTTTT-AAGTCCACAACTCTGTGGCACCTTTTT
* * * *
43231 CCTTTTAAGTCCATAACTCCGTGGTATCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
*
43264 CCTTTTAAGTCCACAACTCTGTGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
*
43297 CCTTTTAAGTCCACAACTCCGTGGCACC-TTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
* * *
43329 CTTTTTAAGTCCACGACTCTGTGGCACCCTTTTC
1 CCTTTTAAGTCCACAACTCTGTGGCA-CCTTTTT
* **
43363 CCTTTTAAGCCCAC-ACTTCCATGGCATCCCTTTTT
1 CCTTTTAAGTCCACAAC-TCTGTGGCA--CCTTTTT
* * **
43398 -CTTGTAAGTCTACAACTCCATGGCACCTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTT
43428 AAGTCCAATA
Statistics
Matches: 1096, Mismatches: 177, Indels: 230
0.73 0.12 0.15
Matches are distributed among these distances:
26 21 0.02
27 251 0.23
28 25 0.02
29 6 0.01
31 2 0.00
32 49 0.04
33 359 0.33
34 314 0.29
35 60 0.05
36 9 0.01
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.37
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
Found at i:42116 original size:27 final size:27
Alignment explanation
Indices: 42081--42134 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
42071 TTTCCTTTCA
*
42081 AAGTACACAACTCTATGGCACCCTTTT
1 AAGTACACAACTCCATGGCACCCTTTT
* * *
42108 AAGTCCACAACTCCGTGGCACCTTTTT
1 AAGTACACAACTCCATGGCACCCTTTT
42135 CTTTTTAAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (27 bp):
AAGTACACAACTCCATGGCACCCTTTT
Found at i:42248 original size:60 final size:61
Alignment explanation
Indices: 41961--43377 Score: 485
Period size: 60 Copynumber: 22.5 Consensus size: 61
41951 AAAGTCGATG
* * * * *
41961 ACTCTGTGGCAGCTTTTT-CTTTTCAAAGTCCACAACTCTGTGGCAC-CCTTTAAAGCCCACA
1 ACTCCGTGGCACCTTTTTCCTTTT--AAGTCCACAACTCCGTGGCACTCCTTTTAAGTCCACA
* * * *
42022 ACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCTTTCAAAGTAC
1 ACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTT-TAAGTCC
42087 ACA
59 ACA
** * *
42090 ACTCTATGGCA-C-----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCA
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTT-AAGTCCA
42149 CA
60 CA
* *
42151 ACTCCGTGACACTCTTTTTCCTTTTAAGTCCATAACT-CGTGGCAC-CCTTTTAAGTCCACA
1 ACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAGTCCACA
* ** *
42211 ACTCCATGGCACCTTTTTATTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTAAGTCC
1 ACTCCGTGGCACCTTTTTCCTTTT-AAGTCCACAACTCCGTGGCAC------TCCTTTTAAGTCC
42276 ACA
59 ACA
** *
42279 ACTTTGTGGCA-C-----CCTTTTAAGTCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCAC
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTTAAGTCCAC
42338 A
61 A
* * ** *
42339 ACTCCATGGCACCTTGTTCCTTTTAAGTCCATTACTCCATGGCAC-CCTTTTAAGTCCACA
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAGTCCACA
* * * ** * *
42399 ACTCCGTGGCATCTTTTTCCTTTTCAGTCCTCAACTTTGTGGCACCTTTTTCGTTTCAAAGTCCA
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTT-TAAGTCCA
42464 CA
60 CA
** * * * *
42466 ACTCTATGGTAACC-TTTT-C-----AGTCCACAACTCCGTGACACCTTTTTCTTTTTAAAGCCC
1 ACTCCGTGG-CACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTT-AAGTCC
42524 ACA
59 ACA
* * **
42527 ACTCCGTGGCACTCTTTTTCCTTTTAAGTCTATAACTTTGTGGCAC-CCTTTTAAGTCCACA
1 ACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAGTCCACA
** * ** *
42588 ACTCTATGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGAAACCTTGTTCCTTTTAAGTCCAT
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTTAAGTCCAC
*
42653 G
61 A
* * * * * *
42654 ACTCCGTTGCACCTTCTTCTTTTTAAAG-CGCA-AACTCTGAGCCACTCCTTTTCCTTTTAAGTC
1 ACTCCGTGGCACCTTTTTCCTTTT-AAGTC-CACAACTCCGTGGCA---C---TCCTTTTAAGTC
42717 CACA
58 CACA
* * * * *
42721 ACCCCGTGGCA-C-----CCTTTTAAGTCCATAACTCTGTGGCACTTTTTTCTTTTTAAGTCCAT
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC-----TCCTTTTAAGTCCAC
*
42780 G
61 A
* ** * *
42781 ACTCTGTGGCACCTTTTT-CTTTTCAATGTCCACAACTTTGTGGCAC-ACTTTTAAGTCCGCA
1 ACTCCGTGGCACCTTTTTCCTTTT-AA-GTCCACAACTCCGTGGCACTCCTTTTAAGTCCACA
** * * *
42842 ACTCAATGGCACC-TTTTCTTTTTGAAAG-CCAGCAATTCCGTGGCACTCTTTTTCCTTTTTAGT
1 ACTCCGTGGCACCTTTTTCCTTTT--AAGTCCA-CAACTCCGTGGCA--C----TCCTTTTAAGT
*
42905 CCATA
57 CCACA
* * * *
42910 ACTTCGTGGCA-C-----CCTTTTAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAGTCCAT
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTTAAGTCCAC
*
42969 G
61 A
* * * *
42970 ACTCTGTGGCACC----T--TTTTAAGTCCACAACTCTGCGGCACCTTTTTCTTTTTAAAG-CCT
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTT-AAGTCC-
43028 ACA
59 ACA
* * *
43031 ACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCTGTCGCAC-CCTTTTAAGTCCACA
1 ACTCCGTGGCAC-CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAGTCCACA
* * ** * *
43092 ACTCCGTGGCATCTTTTTCCTTTTAAGTCTACAACTTTGTGGCACCTTTTTCTTTTTAAAGTTCA
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTT-AAGTCCA
43157 CA
60 CA
* * * * *
43159 ACTCTGTGGCA-C-----CCTTTTAAGTCCATAACTCTGTGGCACATTTTCTTTTTAAAGCCCAC
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC----TCCTTTT-AAGTCCAC
43218 A
61 A
* * *
43219 ACTCCGTGGCA------ACCTTTTAAGTCCATAACTCCGTGGTATCTTTTTCCTTTTAAGTCCAC
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----TCCTTTTAAGTCCAC
43278 A
61 A
* * * *
43279 ACTCTGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCTTTTTAAGTCCACG
1 ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C---TCCTTTTAAGTCCACA
* * *
43344 ACTCTGTGGCACCCTTTTCCCTTTTAAGCCCACA
1 ACTCCGTGGCA-CCTTTTTCCTTTTAAGTCCACA
43378 CTTCCATGGC
Statistics
Matches: 1075, Mismatches: 170, Indels: 217
0.74 0.12 0.15
Matches are distributed among these distances:
58 1 0.00
59 10 0.01
60 333 0.31
61 309 0.29
62 34 0.03
63 13 0.01
65 34 0.03
66 123 0.11
67 101 0.09
68 117 0.11
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.37
Consensus pattern (61 bp):
ACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAGTCCACA
Found at i:42256 original size:189 final size:188
Alignment explanation
Indices: 41973--42651 Score: 873
Period size: 189 Copynumber: 3.6 Consensus size: 188
41963 TCTGTGGCAG
* * * **
41973 CTTTTT-CTTTTCAAAGTCCACAACTCTGTGGCACCCTTTAAAGCCCACAACTCTGTGGCACTCT
1 CTTTTTCCTTTT--AAGTCCATAACTC-GTGGCACCCTTTTAAGTCCACAACTCCATGGCAC-CT
* *
42037 TTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCTTTCAAAGTACACAACTCTATGGCAC
62 TTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTCAAAGTCCACAACTCTATGGCAC
*
42102 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGACACT
127 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
42164 CTTTTTCCTTTTAAGTCCATAACTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTT
1 CTTTTTCCTTTTAAGTCCATAACTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTT
** * * * * *
42229 ATTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTT-TAAGTCCACAACTTTGTGGCACCC
66 CCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTCAAAGTCCACAACTCTATGGCACCC
* * * * *
42293 TTTTAAGTCCACAACTCTGTGGCATCTTTTTCCTTTT-AAGTCCACAACTCCATGGCAC-
129 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
* * * * *
42351 CTTGTTCCTTTTAAGTCCATTACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
1 CTTTTTCCTTTTAAGTCCATAACT-CGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * ** * * *
42416 TCCTTTTCAGTCCTCAACTTTGTGGCACCTTTTTCGTTTCAAAGTCCACAACTCTATGGTAACCT
65 TCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTCAAAGTCCACAACTCTATGGCACCCT
* *
42481 TTTCAGTCCACAACTCCGTGACACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
130 TTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
* * * *
42540 CTTTTTCCTTTTAAGTCTATAACTTTGTGGCACCCTTTTAAGTCCACAACTCTATGGCATCTTTT
1 CTTTTTCCTTTTAAGTCCATAAC-TCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
** * *
42605 TCCTTTTAAGTCCACAACTCCGTGAAACCTTGTTCCTTT-TAAGTCCA
65 TCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTCAAAGTCCA
42652 TGACTCCGTT
Statistics
Matches: 418, Mismatches: 62, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
186 9 0.02
187 89 0.21
188 96 0.23
189 190 0.45
190 23 0.06
191 6 0.01
192 5 0.01
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.37
Consensus pattern (188 bp):
CTTTTTCCTTTTAAGTCCATAACTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTT
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTCAAAGTCCACAACTCTATGGCACCCTT
TTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
Found at i:42605 original size:27 final size:27
Alignment explanation
Indices: 42546--42598 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
42536 CACTCTTTTT
* * * *
42546 CCTTTTAAGTCTATAACTTTGTGGCAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
42573 CCTTTTAAGTCCACAACTCTATGGCA
1 CCTTTTAAGTCCACAACTCTATGGCA
42599 TCTTTTTCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCTATGGCAC
Found at i:42734 original size:160 final size:161
Alignment explanation
Indices: 42478--42778 Score: 410
Period size: 160 Copynumber: 1.9 Consensus size: 161
42468 TCTATGGTAA
* * * * *
42478 CCTTTTCAGTCCACAACTCCGTGACACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 CCTTTTAAGTCCACAACTCCGTGACACCTTCTTCTTTTTAAAGCCCACAACTCCGAGCCACTCCT
* * ***
42543 TTTCCTTTTAAGTCTATAACTTTGTGGCACCCTTTTAAGTCCACAACTCTATGGCA-TCTTTTTC
66 TTTCCTTTTAAGTCCACAACCCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCACT-TTTTTC
42607 CTTTTAAGTCCACAACTCCGTGAAACCTTGTT
130 CTTTTAAGTCCACAACTCCGTGAAACCTTGTT
** * *
42639 CCTTTTAAGTCCATGACTCCGTTG-CACCTTCTTCTTTTTAAAGCGCA-AACTCTGAGCCACTCC
1 CCTTTTAAGTCCACAACTCCG-TGACACCTTCTTCTTTTTAAAGCCCACAACTCCGAGCCACTCC
* *
42702 TTTTCCTTTTAAGTCCACAACCCCGTGGCACCCTTTTAAGTCCATAACTCTGTGGCACTTTTTTC
65 TTTTCCTTTTAAGTCCACAACCCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCACTTTTTTC
*
42767 TTTTTAAGTCCA
130 CTTTTAAGTCCA
42779 TGACTCTGTG
Statistics
Matches: 121, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
160 79 0.65
161 40 0.33
162 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.38
Consensus pattern (161 bp):
CCTTTTAAGTCCACAACTCCGTGACACCTTCTTCTTTTTAAAGCCCACAACTCCGAGCCACTCCT
TTTCCTTTTAAGTCCACAACCCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCACTTTTTTCC
TTTTAAGTCCACAACTCCGTGAAACCTTGTT
Found at i:42765 original size:27 final size:27
Alignment explanation
Indices: 42706--42759 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
42696 CACTCCTTTT
42706 CCTTTTAAGTCCACAACCCCGTGGCAC
1 CCTTTTAAGTCCACAACCCCGTGGCAC
* * *
42733 CCTTTTAAGTCCATAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACCCCGTGGCAC
42760 TTTTTTCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACCCCGTGGCAC
Found at i:42951 original size:26 final size:27
Alignment explanation
Indices: 42895--43000 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 27
42885 CACTCTTTTT
* * * *
42895 CCTTTTTAGTCCATAACTTCGTGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
42922 CCTTTTAAGTCCACAACTCCATGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
** **
42949 CTTTTTCTTTTTAAGTCCATGACTCTGTGGCAC
1 C-----C-TTTTAAGTCCACAACTCCATGGCAC
*
42982 CTTTTTAAGTCCACAACTC
1 CCTTTTAAGTCCACAACTC
43001 TGCGGCACCT
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
27 39 0.63
32 1 0.02
33 22 0.35
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.37
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCATGGCAC
Found at i:42981 original size:155 final size:155
Alignment explanation
Indices: 42137--43377 Score: 556
Period size: 155 Copynumber: 7.9 Consensus size: 155
42127 ACCTTTTTCT
* * * * *
42137 TTTTAAAGCCCACAACTCCGTGACACTCTTTTTCCTTTTAAGTCCATAACTC-GTGGCACCCTTT
1 TTTT-AAGTCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAGTCCACAACTCTGTGGCACCTTTT
* * * * *
42201 TAAGTCCACAACTCCATGGCACCTTTTTATTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCC
64 TAAGTCCACAACTCAACGGCACCTTTTTCTTTTTAAAGCCTACAACTCCGTGGCACTCTTTTTCC
* *
42266 TTTTAAGTCCACAACTTTGTGGCACCC
129 TTTTAAGTCCACAACTCTGTCGCACCC
* * * **
42293 TTTTAAGTCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCTGTGGCACC----T-
** * *
42358 CTTTTAAGTCCATTACTCCATGGCACC-----C-TTTT-AAGTCC-ACAACTCCGTGGCA-TCTT
61 -TTTTAAGTCCACAACTCAACGGCACCTTTTTCTTTTTAAAG-CCTACAACTCCGTGGCACTCTT
* * * *
42414 TTTCCTTTTCAGTCCTCAACTTTGTGGCACCTTTTTC
124 TTTCCTTTTAAGTCCACAACTCTGTCGCACC-----C
* ** * * *
42451 GTTTCAAAGTCCACAACTCTATGGTAACC-TTTTC------AGTCCACAACTCCGTGACACCTTT
1 -TTT-TAAGTCCACAACTCCGTGG-CACCTTTTTCTTTTTAAGTCCACAACTCTGTGGCA-C---
* *** * * * **
42509 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGTCTATAACTTTGTGGCA-
59 --CTTTTT-AAGTCCACAACTCAACGGCAC-CTTTTTCTTTTTAAAGCCTACAACTCCGTGGCAC
* *
42572 -C-----CCTTTTAAGTCCACAACTCTATGGCATCTTTTTCC
120 TCTTTTTCCTTTTAAGTCCACAACTCTGTCGCA-C-----CC
** * * ** * *
42608 TTTTAAGTCCACAACTCCGTGAAACCTTGTTCCTTTTAAGTCCATGACTCCGTTGCACCTTCTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCTGTGGCA----C--C
* * * * *
42673 TTTTTAAAG-CGCA-AACTCTGA-GCCACTCCTTTTCCTTTT-AAGTCC-ACAACCCCGTGGCA-
60 TTTTT-AAGTC-CACAACTC-AACGGCAC-CTTTTTCTTTTTAAAG-CCTACAACTCCGTGGCAC
* * *
42732 -C-----CCTTTTAAGTCCATAACTCTGTGGCACTTTTTTCT
120 TCTTTTTCCTTTTAAGTCCACAACTCTGTCGCAC------CC
** * * *
42768 TTTTAAGTCCATGACTCTGTGGCACCTTTTTCTTTTCAATGTCCACAACTTTGTGGCACAC-TTT
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAA-GTCCACAACTCTGTGGCAC-CTTTT
* * *
42832 TAAGTCCGCAACTCAATGGCACC-TTTTCTTTTTGAAAGCC-AGCAATTCCGTGGCACTCTTTTT
64 TAAGTCCACAACTCAACGGCACCTTTTTCTTTTT-AAAGCCTA-CAACTCCGTGGCACTCTTTTT
* * *
42895 CCTTTTTAGTCCATAACT-TCGTGGCACCC
127 CCTTTTAAGTCCACAACTCT-GTCGCACCC
* **
42924 TTTTAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAGTCCATGACTCTGTGGCACCTTTTTA
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCTGTGGCACCTTTTTA
** *
42989 AGTCCACAACTCTGCGGCACCTTTTTCTTTTTAAAGCCTACAACTCTGTGGCACTCTTTTTCCTT
66 AGTCCACAACTCAACGGCACCTTTTTCTTTTTAAAGCCTACAACTCCGTGGCACTCTTTTTCCTT
43054 TTAAGTCCACAACTCTGTCGCACCC
131 TTAAGTCCACAACTCTGTCGCACCC
* * * *
43079 TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCTACAACTTTGTGGCACCTTTTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCTGTGGCA-C-----C
* *** * * *
43144 TTTTTAAAGTTCACAACTCTGTGGCACC-----C-TTTT-AAGTCC-ATAACTCTGTGGCA--CA
60 TTTTT-AAGTCCACAACTCAACGGCACCTTTTTCTTTTTAAAG-CCTACAACTCCGTGGCACTCT
* * * * *
43199 TTTTCTTTTTAAAGCCCACAACTCCGTGGCAACC
123 TTTTCCTTTT-AAGTCCACAACTCTGTCGCACCC
* * * *
43233 TTTTAAGTCCATAACTCCGTGGTATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCTGTGGCACC----T-
*** * * *
43298 CTTTTAAGTCCACAACTCCGTGGCACC-TTTTCTTTTT-AAGTCC-ACGACTCTGTGGCACCCTT
61 -TTTTAAGTCCACAACTCAACGGCACCTTTTTCTTTTTAAAG-CCTACAACTCCGTGGCACTCTT
* *
43360 TTCCCTTTTAAGCCCACA
124 TTTCCTTTTAAGTCCACA
43378 CTTCCATGGC
Statistics
Matches: 874, Mismatches: 119, Indels: 181
0.74 0.10 0.15
Matches are distributed among these distances:
148 1 0.00
152 1 0.00
153 72 0.08
154 152 0.17
155 248 0.28
156 86 0.10
157 6 0.01
158 23 0.03
159 13 0.01
160 129 0.15
161 79 0.09
162 63 0.07
164 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.37
Consensus pattern (155 bp):
TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCTGTGGCACCTTTTTA
AGTCCACAACTCAACGGCACCTTTTTCTTTTTAAAGCCTACAACTCCGTGGCACTCTTTTTCCTT
TTAAGTCCACAACTCTGTCGCACCC
Found at i:43496 original size:49 final size:49
Alignment explanation
Indices: 43424--44259 Score: 549
Period size: 49 Copynumber: 17.8 Consensus size: 49
43414 TCCATGGCAC
*
43424 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * *
43473 CTTTAAGACCAATATTGCTAGCCTTAAATCAGCACATTGGTACC--T-T
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
*
43519 C---AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
43565 CATCTTGAGTCCAATATTGCTGGCCTTGAATCATCATATTGGCACC-TTGT
1 C-T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
43615 CTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
43657 C---AAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TAT
* * ** *
43704 C--TAAGACCAATGTCATTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* ** *
43744 ---TAAGCCCAATATTACTGGCCTTGAATCAGCATATTGGCACC-TTGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
43789 CTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
43831 ---TAAGCCCAATATCACTAGCCTTGAATCAGTATATTGGCACCTTCT-T
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TAT
* * * * *
43877 CTTTAAGTCCAATATC-ATCGGCCTTGAATCAGCACATTGGGATCTTCAT
1 CTTTAAGTCCAATATCGCT-GGCCTTGAATCAGCATATTGGCACCTTTAT
* ** * *
43926 CTTTAAGTCCGATATCATTGGCCTTGAATCACCATATTGGTACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * * *
43975 CTTTAAGTCAAATGTCACCGGCCTTGAATCAGCACATTGGCATCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
44024 CTTTAAGTCCGATATTGCCGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
44073 CTTTAAGACCAATATTGCTCGCCTTGAATCAGCACATTGGCA-CTTTCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-AT
* * * ** * *
44122 CTTTATGTCCAAAATCACTGGCCTTGAATCAGCATATTGTAATCTTTAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * ** *
44171 CATTCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTGGCA--TTCT-T
1 C-TT--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TAT
* ** * * *
44221 CTTCAAGTTTAATGTCGCTGGCCATGAATCAGCACATTG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
44260 CCATTCTTTG
Statistics
Matches: 622, Mismatches: 119, Indels: 94
0.74 0.14 0.11
Matches are distributed among these distances:
39 94 0.15
42 4 0.01
43 34 0.05
45 4 0.01
46 3 0.00
47 31 0.05
48 102 0.16
49 270 0.43
50 13 0.02
51 38 0.06
52 29 0.05
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (49 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
Found at i:43677 original size:39 final size:39
Alignment explanation
Indices: 43632--43870 Score: 172
Period size: 39 Copynumber: 5.7 Consensus size: 39
43622 ACCAATGTTG
*
43632 CTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCG
1 CTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCA
* * * *
43671 TTGGCCTTGAATCAGCATATTGGCACCTTGTGTCTAAGACCAATGTCA
1 CTGGCCTTGAATCAGCACATTGGCA--------C-AAGCCCAATATCA
* * *
43719 TTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATTA
1 CTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCA
* * * *
43758 CTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCG
1 CTGGCCTTGAATCAGCACATTGGCA--------C-AAGCCCAATATCA
*
43806 CTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCA
1 CTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCA
* * *
43845 CTAGCCTTGAATCAGTATATTGGCAC
1 CTGGCCTTGAATCAGCACATTGGCAC
43871 CTTCTTCTTT
Statistics
Matches: 156, Mismatches: 26, Indels: 36
0.72 0.12 0.17
Matches are distributed among these distances:
39 88 0.56
47 1 0.01
48 67 0.43
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
CTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCA
Found at i:43724 original size:87 final size:87
Alignment explanation
Indices: 43575--44017 Score: 501
Period size: 87 Copynumber: 5.0 Consensus size: 87
43565 CATCTTGAGT
** * * **
43575 CCAATATTGCTGGCCTTGAATCATCATATTGGCACCTTGTCTTTAAGACCAATGTTGCTGGCCTT
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCACTGGCCTT
*
43640 GAATCAGCACATTGGCACAAGC
66 GAATCAGCACATTGGCATAAGC
** * *
43662 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTGTCTAAGACCAATGTCATTGGCCTT
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCACTGGCCTT
43727 GAATCAGCACATTGGCATAAGC
66 GAATCAGCACATTGGCATAAGC
* *
43749 CCAATATTACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTT
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCACTGGCCTT
43814 GAATCAGCACATTGGCATAAGC
66 GAATCAGCACATTGGCATAAGC
* * * * * *
43836 CCAATATCACTAGCCTTGAATCAGTATATTGGCACCTTCTTCTTTAAGTCCAATATCA-TCGGCC
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTT-GTCTCTAAGACCAATGTCACT-GGCC
*
43900 TTGAATCAGCACATTGGGATCTTCATCTTTAAGT
64 TTGAATCAGCACATT-GG-----CA----TAAGC
* * * * * * * * *
43934 CCGATATCATTGGCCTTGAATCACCATATTGGTACCTTTATCTTTAAGTCAAATGTCACCGGCCT
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACC-TTGTCTCTAAGACCAATGTCACTGGCCT
43999 TGAATCAGCACATTGGCAT
65 TGAATCAGCACATTGGCAT
44018 CTTCATCTTT
Statistics
Matches: 308, Mismatches: 34, Indels: 27
0.83 0.09 0.07
Matches are distributed among these distances:
87 195 0.63
88 34 0.11
89 2 0.01
92 2 0.01
94 2 0.01
97 2 0.01
98 69 0.22
99 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (87 bp):
CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCACTGGCCTT
GAATCAGCACATTGGCATAAGC
Found at i:45056 original size:21 final size:19
Alignment explanation
Indices: 45030--45083 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
45020 TTCAATAATT
45030 TGTATCGATACAAACAGCAAA
1 TGTATCGATACAAA-AG-AAA
* * *
45051 TGTATCGATACATAAGTAT
1 TGTATCGATACAAAAGAAA
45070 TGTATCGATACAAA
1 TGTATCGATACAAA
45084 GTTGCCCTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 14 0.48
20 2 0.07
21 13 0.45
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (19 bp):
TGTATCGATACAAAAGAAA
Found at i:49249 original size:20 final size:20
Alignment explanation
Indices: 49224--49287 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
49214 ACAAGCCAAA
49224 GTATCGATACATTTTATGAT
1 GTATCGATACATTTTATGAT
49244 GTATCGATAC-----A--AT
1 GTATCGATACATTTTATGAT
49257 GTATCGATACATTTTATGAT
1 GTATCGATACATTTTATGAT
49277 GTATCGATACA
1 GTATCGATACA
49288 ATGTATCGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 12 0.32
15 1 0.03
18 1 0.03
20 23 0.62
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (20 bp):
GTATCGATACATTTTATGAT
Found at i:49260 original size:13 final size:13
Alignment explanation
Indices: 49242--49300 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
49232 ACATTTTATG
49242 ATGTATCGATACA
1 ATGTATCGATACA
49255 ATGTATCGATAC-
1 ATGTATCGATACA
**
49267 AT-T-T---TATG
1 ATGTATCGATACA
49275 ATGTATCGATACA
1 ATGTATCGATACA
49288 ATGTATCGATACA
1 ATGTATCGATACA
49301 TACTGTGTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
7 2 0.05
8 2 0.05
9 1 0.03
10 2 0.05
11 1 0.03
12 2 0.05
13 27 0.73
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:49261 original size:33 final size:33
Alignment explanation
Indices: 49224--49320 Score: 160
Period size: 33 Copynumber: 3.0 Consensus size: 33
49214 ACAAGCCAAA
49224 GTATCGATACATTTTATGATGTATCGATACAAT
1 GTATCGATACATTTTATGATGTATCGATACAAT
49257 GTATCGATACATTTTATGATGTATCGATACAAT
1 GTATCGATACATTTTATGATGTATCGATACAAT
** *
49290 GTATCGATACATACTGTG-TGTATCGATACAA
1 GTATCGATACATTTTATGATGTATCGATACAA
49321 GTTTGGCTAC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 13 0.21
33 48 0.79
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (33 bp):
GTATCGATACATTTTATGATGTATCGATACAAT
Found at i:49399 original size:20 final size:21
Alignment explanation
Indices: 49352--49404 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
49342 GCCAATGACT
**
49352 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
49373 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
49393 TGTATCGATACA
1 TGTATCGATACA
49405 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:49410 original size:13 final size:13
Alignment explanation
Indices: 49392--49422 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
49382 ACATTTGGTC
49392 ATGTATCGATACA
1 ATGTATCGATACA
49405 ATGTATCGATACA
1 ATGTATCGATACA
49418 ATGTA
1 ATGTA
49423 ATCTATATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:49451 original size:20 final size:20
Alignment explanation
Indices: 49406--49456 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
49396 ATCGATACAA
49406 TGTATCGATACAATGTAATC
1 TGTATCGATACAATGTAATC
* * *
49426 TATATCGATAC-ATTTAAATG
1 TGTATCGATACAATGT-AATC
49446 TGTATCGATAC
1 TGTATCGATAC
49457 TTTTCAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTATCGATACAATGTAATC
Found at i:51907 original size:13 final size:13
Alignment explanation
Indices: 51889--51913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51879 GTATTGATAT
51889 TGTATCGATACAA
1 TGTATCGATACAA
51902 TGTATCGATACA
1 TGTATCGATACA
51914 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:58114 original size:20 final size:20
Alignment explanation
Indices: 58089--58154 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
58079 TTACAAGCCA
58089 ATGTATCGATACATTTTATG
1 ATGTATCGATACATTTTATG
58109 ATGTATCGATAC-----A--
1 ATGTATCGATACATTTTATG
58122 ATGTATCGATACATTTTATG
1 ATGTATCGATACATTTTATG
58142 ATGTATCGATACA
1 ATGTATCGATACA
58155 ATGTATCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
15 1 0.03
18 1 0.03
20 25 0.64
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTTTATG
Found at i:58124 original size:33 final size:33
Alignment explanation
Indices: 58087--58168 Score: 164
Period size: 33 Copynumber: 2.5 Consensus size: 33
58077 CGTTACAAGC
58087 CAATGTATCGATACATTTTATGATGTATCGATA
1 CAATGTATCGATACATTTTATGATGTATCGATA
58120 CAATGTATCGATACATTTTATGATGTATCGATA
1 CAATGTATCGATACATTTTATGATGTATCGATA
58153 CAATGTATCGATACAT
1 CAATGTATCGATACAT
58169 ACTGTGTGTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (33 bp):
CAATGTATCGATACATTTTATGATGTATCGATA
Found at i:58127 original size:13 final size:13
Alignment explanation
Indices: 58109--58167 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
58099 ACATTTTATG
58109 ATGTATCGATACA
1 ATGTATCGATACA
58122 ATGTATCGATAC-
1 ATGTATCGATACA
**
58134 AT-T-T---TATG
1 ATGTATCGATACA
58142 ATGTATCGATACA
1 ATGTATCGATACA
58155 ATGTATCGATACA
1 ATGTATCGATACA
58168 TACTGTGTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
7 2 0.05
8 2 0.05
9 1 0.03
10 2 0.05
11 1 0.03
12 2 0.05
13 27 0.73
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:58266 original size:20 final size:21
Alignment explanation
Indices: 58219--58266 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
58209 GCCAATGACT
**
58219 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
58240 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
58260 TGTATCG
1 TGTATCG
58267 TTAGAATGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:59799 original size:224 final size:224
Alignment explanation
Indices: 59409--59859 Score: 742
Period size: 224 Copynumber: 2.0 Consensus size: 224
59399 TTCAAACAGT
* *
59409 ACCTATTTCACCTTTTATAACTTTTGAATCGATCCGAAATAAATTTGGGAAGTGGGACAGCGCGA
1 ACCTATTTCACCCTTTATAACTTTCGAATCGATCCGAAATAAATTTGGGAAGTGGGACAGCGCGA
* * * *
59474 TGCTATCCCCTGTGTTTGTTTGTTGCCAAAAATGTTTTTTTTCCCCGAATTCTATCCCGAGATAT
66 TGCTATCCCCTATGTTTGGTTGTTGCCAAAAATGGTTTTTTTCCCCGAATTCTATCCCGAGACAT
* *
59539 TCGGATGTCTCCGCATAACCGCGATCAGCCTTGAAATCCTTTTGGACTTCTTTTAAACCATGTCA
131 TCAGATGTCTCCGCACAACCGCGATCAGCCTTGAAATCCTTTTGGACTTCTTTTAAACCATGTCA
59604 AGGCACAAATACTTTTATATCTTTTTTTC
196 AGGCACAAATACTTTTATATCTTTTTTTC
*
59633 ACCTATTTCACCCTTTATAACTTTCGAATCGATCCGAAATAAATTTGGGAAGTGGGATAGCGCGA
1 ACCTATTTCACCCTTTATAACTTTCGAATCGATCCGAAATAAATTTGGGAAGTGGGACAGCGCGA
* ** *
59698 TGCTATCCCTTAT-TTTCGGTTGTTGTTAAAAATGGTTTTTTTCCCTGAATTCTATCCCGAGACA
66 TGCTATCCCCTATGTTT-GGTTGTTGCCAAAAATGGTTTTTTTCCCCGAATTCTATCCCGAGACA
* * *
59762 TTCAGATGTCTTCGTACAACCGCGATCAGCCTTGAAATCCTTTTGGACTTCTTTTAGACCATGTC
130 TTCAGATGTCTCCGCACAACCGCGATCAGCCTTGAAATCCTTTTGGACTTCTTTTAAACCATGTC
59827 AAGGCACAAATACTTTTATATCTTTTTTTC
195 AAGGCACAAATACTTTTATATCTTTTTTTC
59857 ACC
1 ACC
59860 CTCATTCATA
Statistics
Matches: 210, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
223 3 0.01
224 207 0.99
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (224 bp):
ACCTATTTCACCCTTTATAACTTTCGAATCGATCCGAAATAAATTTGGGAAGTGGGACAGCGCGA
TGCTATCCCCTATGTTTGGTTGTTGCCAAAAATGGTTTTTTTCCCCGAATTCTATCCCGAGACAT
TCAGATGTCTCCGCACAACCGCGATCAGCCTTGAAATCCTTTTGGACTTCTTTTAAACCATGTCA
AGGCACAAATACTTTTATATCTTTTTTTC
Found at i:70420 original size:53 final size:53
Alignment explanation
Indices: 70308--70420 Score: 120
Period size: 53 Copynumber: 2.1 Consensus size: 53
70298 CCTAAATCTA
* * *
70308 AAATGACTTGAACTCAATTTAACCCGAATGTTAAACCCAATTGACCCGAATAC
1 AAATGACTCGAACCCAATTTAACCCGAATGTTAAACCCAATTGACCCAAATAC
* * * * * *
70361 AGAATGACTCGAACCCGA-TTAACTCGAGTGTTAAACTCGATTGACCCAAATTC
1 A-AATGACTCGAACCCAATTTAACCCGAATGTTAAACCCAATTGACCCAAATAC
70414 GAAATGA
1 -AAATGA
70421 TCTAAACTTG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
53 35 0.71
54 14 0.29
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (53 bp):
AAATGACTCGAACCCAATTTAACCCGAATGTTAAACCCAATTGACCCAAATAC
Found at i:70475 original size:32 final size:32
Alignment explanation
Indices: 70413--70490 Score: 81
Period size: 32 Copynumber: 2.4 Consensus size: 32
70403 GACCCAAATT
*
70413 CGAAATGATCTAAACTTGAAATAACCCGAACC
1 CGAAATGATCCAAACTTGAAATAACCCGAACC
* *
70445 TGAAATGATCCAAAC-TGAAA-ACGACTCGAACC
1 CGAAATGATCCAAACTTGAAATA--ACCCGAACC
70477 CGAAAATGA-CCAAA
1 CG-AAATGATCCAAA
70491 AAATTTTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 1 0.03
31 5 0.13
32 27 0.69
33 6 0.15
ACGTcount: A:0.46, C:0.24, G:0.14, T:0.15
Consensus pattern (32 bp):
CGAAATGATCCAAACTTGAAATAACCCGAACC
Found at i:71269 original size:148 final size:150
Alignment explanation
Indices: 71018--71294 Score: 380
Period size: 148 Copynumber: 1.9 Consensus size: 150
71008 CATGTTAGTC
* * * * *
71018 TAATTTTATTTTATTTATTTTCAAAAAAATACCATTTTGTACTTTAATAGAAGCCTGAAAAGATA
1 TAATTTAATTTTATTTATTTTC-AAAAAATACCATTTCGAACCTTAATAGAAGCCCGAAAAGATA
* * * *
71083 CGAAAAGTTTTTGGAATCTTTTATACCCCTACCGACCCCCGTAGGAATATAAAATATTAAAAAAT
65 CAAAAAGTTTTTGAAATCTTTTATACCCCTACCGACCCCCATAGGAATATAAAAGATTAAAAAAT
71148 TTTTTTATGAAAGTGTTAATT
130 TTTTTTATGAAAGTGTTAATT
* * *
71169 TAATTTAATTTTATTTATTTTC-GATAATACCA-TTCGAACCTTAATGGAAGCCCGAAAAGATAC
1 TAATTTAATTTTATTTATTTTCAAAAAATACCATTTCGAACCTTAATAGAAGCCCGAAAAGATAC
** *
71232 AAAAAGTTTTTGAAATCTTTTATACCTTTA-CGAACCCCTATAGGAATATAAAAGATTAAAAAA
66 AAAAAGTTTTTGAAATCTTTTATACCCCTACCG-ACCCCCATAGGAATATAAAAGATTAAAAAA
71295 CTGATTAAAA
Statistics
Matches: 110, Mismatches: 15, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
147 2 0.02
148 79 0.72
149 8 0.07
151 21 0.19
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.37
Consensus pattern (150 bp):
TAATTTAATTTTATTTATTTTCAAAAAATACCATTTCGAACCTTAATAGAAGCCCGAAAAGATAC
AAAAAGTTTTTGAAATCTTTTATACCCCTACCGACCCCCATAGGAATATAAAAGATTAAAAAATT
TTTTTATGAAAGTGTTAATT
Found at i:72191 original size:12 final size:12
Alignment explanation
Indices: 72174--72200 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72164 TGGAAATGAA
72174 CAAGAAAGAAAG
1 CAAGAAAGAAAG
72186 CAAGAAAGAAAG
1 CAAGAAAGAAAG
72198 CAA
1 CAA
72201 AGTAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.11, G:0.22, T:0.00
Consensus pattern (12 bp):
CAAGAAAGAAAG
Found at i:72273 original size:11 final size:10
Alignment explanation
Indices: 72250--72289 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
72240 TTTGGCTTGA
*
72250 TTTTTCCTTT
1 TTTTTTCTTT
*
72260 TTTTCTCTTT
1 TTTTTTCTTT
72270 TTTTTTCTTCT
1 TTTTTTCTT-T
72281 TTTTTTCTT
1 TTTTTTCTT
72290 CCCCCTTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:72275 original size:13 final size:13
Alignment explanation
Indices: 72257--72286 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
72247 TGATTTTTCC
72257 TTTTTTTC-TCTT
1 TTTTTTTCTTCTT
72269 TTTTTTTCTTCTT
1 TTTTTTTCTTCTT
72282 TTTTT
1 TTTTT
72287 CTTCCCCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTTCTTCTT
Found at i:72289 original size:21 final size:20
Alignment explanation
Indices: 72250--72289 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
72240 TTTGGCTTGA
72250 TTTTTCCTTTTTTTCTCTTT
1 TTTTTCCTTTTTTTCTCTTT
* *
72270 TTTTTTCTTCTTTTTTTCTT
1 TTTTTCCTT-TTTTTCTCTT
72290 CCCCCTTGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTCCTTTTTTTCTCTTT
Found at i:72290 original size:11 final size:11
Alignment explanation
Indices: 72256--72290 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
72246 TTGATTTTTC
72256 CTTTTTTTCTCT
1 CTTTTTTTCT-T
*
72268 TTTTTTTTCTT
1 CTTTTTTTCTT
72279 CTTTTTTTCTT
1 CTTTTTTTCTT
72290 C
1 C
72291 CCCCTTGCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
CTTTTTTTCTT
Found at i:73444 original size:168 final size:168
Alignment explanation
Indices: 72924--73455 Score: 632
Period size: 168 Copynumber: 3.2 Consensus size: 168
72914 AACTCGATTT
* * *
72924 TTTG-AAAAAACA-GAATTTC-AAGAAACAAAATTCAAAAACTCATGAAGATGAATTAATTTTTC
1 TTTGAAAAAAAGAGGAATTTCAAAG-AA-AAAATTCAAAAACTTATGAAAATGAATTAATTTTTC
* *
72986 AAATCTGATTTAATATGAATTAAATTATAATATTTTATGAATTTTAAAAATTAAAAACTAAGAAA
64 AAAACTGATTTAATATGAATTAAATTATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAA
* *
73051 AAT--TCATTCAAAAATATTTATGGAGTAGAAAACTCCGTAA
129 AATCCTC-TT-AAAAATATTTACGAAGTAGAAAACTCCGTAA
* * * ** **
73091 TTTGAAAAAAAGA-AAATTTCCAAGAAAAAATTCAAAAAGTTATGAAAATGAAAAAATAATTCAA
1 TTTGAAAAAAAGAGGAATTTCAAAGAAAAAATTCAAAAACTTATGAAAATGAATTAATTTTTCAA
* *
73155 AACTGATTTAATATGAACTAAAATATAATATTTGATGAATTTTAAAAAAATTAAAAACTAAGAAA
66 AACTGATTTAATATGAATTAAATTATAATATTTGATGAATTTT--AAAAATTAAAAACTAAGAAA
* *
73220 AATCCCCTCAAAAATATTTACGAAGTAG-AAACTCCGTAA
129 AATCCTCTTAAAAATATTTACGAAGTAGAAAACTCCGTAA
* * ** *
73259 -TTCAAAAAAAAAGGAATTTCAAAGAAAAAATTTGAAAACTTATGAAAATGAATTAGTTTTTCAA
1 TTTGAAAAAAAGAGGAATTTCAAAGAAAAAATTCAAAAACTTATGAAAATGAATTAATTTTTCAA
* *
73323 AAATAATTTAATATGAATTAAATTATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAA
66 AACTGATTTAATATGAATTAAATTATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAA
* * ** *
73388 TCCTCTTAAAAAAATTTACAAAAAAGAAAAC-CCTATAA
131 TCCTCTTAAAAATATTTACGAAGTAGAAAACTCC-GTAA
* * *
73426 TTTGAGAATAAGAGGAATTCTGAAAGAAAA
1 TTTGAAAAAAAGAGGAATT-TCAAAGAAAA
73456 TTATTAACTC
Statistics
Matches: 309, Mismatches: 45, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
166 44 0.14
167 91 0.29
168 120 0.39
169 52 0.17
170 1 0.00
171 1 0.00
ACGTcount: A:0.53, C:0.08, G:0.09, T:0.30
Consensus pattern (168 bp):
TTTGAAAAAAAGAGGAATTTCAAAGAAAAAATTCAAAAACTTATGAAAATGAATTAATTTTTCAA
AACTGATTTAATATGAATTAAATTATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAA
TCCTCTTAAAAATATTTACGAAGTAGAAAACTCCGTAA
Found at i:79604 original size:20 final size:20
Alignment explanation
Indices: 79579--79632 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
79569 TACCCAGATG
*
79579 TATCGATACATTTTTTAATA
1 TATCGATACATTTTTGAATA
* * *
79599 TATCGATACATGTATGAATG
1 TATCGATACATTTTTGAATA
79619 TATCGATACATTTT
1 TATCGATACATTTT
79633 GTCTTTTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (20 bp):
TATCGATACATTTTTGAATA
Found at i:79681 original size:20 final size:20
Alignment explanation
Indices: 79656--79707 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
79646 ATACATATTG
*
79656 ATACATTTTTCAATGTATCA
1 ATACATTTATCAATGTATCA
* * *
79676 ATACATGTATGAATGTATTA
1 ATACATTTATCAATGTATCA
79696 ATACATTCTATC
1 ATACATT-TATC
79708 TTTTTACCCA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (20 bp):
ATACATTTATCAATGTATCA
Found at i:79681 original size:72 final size:71
Alignment explanation
Indices: 79565--79752 Score: 223
Period size: 72 Copynumber: 2.6 Consensus size: 71
79555 AAAAGTCATA
* ** * * *
79565 TTTTTACCCAGATGTATCGATACATTTTTTAATATATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAAACATATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCAATACAT
* *
79630 TTTGTC
66 TCTATC
* * * * *
79636 TTTTTTATCCATACATATTGATACATTTTTCAATGTATCAATACATGTATGAATGTATTAATACA
1 -TTTTTACCCAAACATATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCAATACA
79701 TTCTATC
65 TTCTATC
** *
79708 TTTTTACCCAAATGTATCGATACATTCTTCAATGTATCGATACAT
1 TTTTTACCCAAACATATCGATACATTTTTCAATGTATCGATACAT
79753 TCTGTCTTTT
Statistics
Matches: 97, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
71 38 0.39
72 59 0.61
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (71 bp):
TTTTTACCCAAACATATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCAATACAT
TCTATC
Found at i:79731 original size:51 final size:51
Alignment explanation
Indices: 79667--79785 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
79657 TACATTTTTC
* * *
79667 AATGTATCAATACATGT-ATGAATGTATTAATACATTCTATCTTTTTACCCA
1 AATGTATCGATACAT-TCATCAATGTATCAATACATTCTATCTTTTTACCCA
* * *
79718 AATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTTTACCCA
1 AATGTATCGATACATTCATCAATGTATCAATACATTCTATCTTTTTACCCA
*
79769 GATGTATCGATACATTC
1 AATGTATCGATACATTC
79786 TATCTTTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.02
51 59 0.98
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (51 bp):
AATGTATCGATACATTCATCAATGTATCAATACATTCTATCTTTTTACCCA
Found at i:79760 original size:24 final size:20
Alignment explanation
Indices: 79718--79755 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
79708 TTTTTACCCA
79718 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
79738 AATGTATCGATACATTCT
1 AATGTATCGATACATTCT
79756 GTCTTTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:79777 original size:31 final size:31
Alignment explanation
Indices: 79739--79815 Score: 145
Period size: 31 Copynumber: 2.5 Consensus size: 31
79729 ACATTCTTCA
*
79739 ATGTATCGATACATTCTGTCTTTTTACCCAG
1 ATGTATCGATACATTCTATCTTTTTACCCAG
79770 ATGTATCGATACATTCTATCTTTTTACCCAG
1 ATGTATCGATACATTCTATCTTTTTACCCAG
79801 ATGTATCGATACATT
1 ATGTATCGATACATT
79816 GAATAATGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.42
Consensus pattern (31 bp):
ATGTATCGATACATTCTATCTTTTTACCCAG
Found at i:79786 original size:51 final size:51
Alignment explanation
Indices: 79687--79786 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
79677 TACATGTATG
*
79687 AATGTATTAATACATTCTATCTTTTTACCCAAATGTATCGATACATTCTTC
1 AATGTATCAATACATTCTATCTTTTTACCCAAATGTATCGATACATTCTTC
* * *
79738 AATGTATCGATACATTCTGTCTTTTTACCCAGATGTATCGATACATTCT
1 AATGTATCAATACATTCTATCTTTTTACCCAAATGTATCGATACATTCT
79787 ATCTTTTTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (51 bp):
AATGTATCAATACATTCTATCTTTTTACCCAAATGTATCGATACATTCTTC
Found at i:82665 original size:13 final size:13
Alignment explanation
Indices: 82647--82677 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82637 ACATTTCAGC
82647 ATGTATCGATACA
1 ATGTATCGATACA
82660 ATGTATCGATACA
1 ATGTATCGATACA
*
82673 TTGTA
1 ATGTA
82678 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:82665 original size:33 final size:33
Alignment explanation
Indices: 82627--82693 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
82617 GTTACAAGCT
*
82627 ATGTATCGATACATT-TCAGCATGTATCGATACA
1 ATGTATCGATACATTGT-ACCATGTATCGATACA
82660 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
82693 A
1 A
82694 ATAGTGATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:82766 original size:19 final size:19
Alignment explanation
Indices: 82722--82794 Score: 92
Period size: 20 Copynumber: 3.7 Consensus size: 19
82712 CTGCCAATCT
**
82722 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
*
82742 CATGTATCGATACAATGAG
1 CATGTATCGATACAATGAA
82761 CATGTATCGATACAATGCAA
1 CATGTATCGATACAATG-AA
*
82781 TATGTATCGATACA
1 CATGTATCGATACA
82795 TCTGGGTGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 19 0.40
20 29 0.60
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:83050 original size:22 final size:22
Alignment explanation
Indices: 83022--83063 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
83012 CTCTTTAAAA
83022 AATTCTCCCCCTTAATCAAAGC
1 AATTCTCCCCCTTAATCAAAGC
*
83044 AATTCTCCCCCTTCATCAAA
1 AATTCTCCCCCTTAATCAAA
83064 TAATAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.38, G:0.02, T:0.29
Consensus pattern (22 bp):
AATTCTCCCCCTTAATCAAAGC
Found at i:91073 original size:13 final size:13
Alignment explanation
Indices: 91055--91085 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
91045 ACATTTCAGC
91055 ATGTATCGATACA
1 ATGTATCGATACA
91068 ATGTATCGATACA
1 ATGTATCGATACA
*
91081 TTGTA
1 ATGTA
91086 CCGTGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:91073 original size:33 final size:33
Alignment explanation
Indices: 91035--91105 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
91025 GTTACAAGTT
*
91035 ATGTATCGATACATT-TCAGCATGTATCGATACA
1 ATGTATCGATACATTGT-ACCATGTATCGATACA
*
91068 ATGTATCGATACATTGTACCGTGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
*
91101 TTGTA
1 ATGTA
91106 CCATGTATCG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:91094 original size:20 final size:20
Alignment explanation
Indices: 91068--91120 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
91058 TATCGATACA
91068 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
*
91088 GTGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
91108 ATGTATCGATACA
1 ATGTATCGATACA
91121 AATAGTGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:92175 original size:48 final size:48
Alignment explanation
Indices: 92113--92366 Score: 368
Period size: 48 Copynumber: 5.3 Consensus size: 48
92103 AGAGGAGTGC
** * * **
92113 CAATGTGCCAATTCAAGACCAACGACATCAAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
*
92161 TAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
92209 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
*
92257 CAATGTGTTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* * * * *
92305 CAATGTGCTGATTCAAGGCCAGTGACATTGACCTAA--TAAAGGAGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
*
92351 CAATGTGTTGATTCAA
1 CAATGTGCTGATTCAA
92367 TGCTAGTGAT
Statistics
Matches: 190, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 22 0.12
48 168 0.88
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
Found at i:92867 original size:28 final size:28
Alignment explanation
Indices: 92480--92861 Score: 453
Period size: 28 Copynumber: 14.0 Consensus size: 28
92470 GGTTTTAAAG
*
92480 GGATGCCACTAACTTGTGGGCTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
*
92508 GGATGCCACTAACTTGTGGGCTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
* *
92536 GGTTGCCATTGACTTGTGGGCTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
* * * *
92564 AGATGTCACTGGCTTGTGGGCTTT-CAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
*
92591 --A-GCCACTGATTTGTGGGCTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
* * *
92616 GGATGCCACTAACTTATGTGCTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
* * * *
92644 AGATGCCACTAACTCGTGGGTTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
*
92672 GGATGCCACTGAGTTGTGGGCTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
92700 GGATGCCACTGACTTGTGGGCTTTGAAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
*
92728 GGATGCCACTGACCTGTGGGCTTTG-AA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
92755 GAGATGCCACTGACTTGTGGGCTTTGAAA
1 G-GATGCCACTGACTTGTGGGCTTTGAAA
* * * *
92784 GGATGCCACTAAC--CT---ATTT-CAA
1 GGATGCCACTGACTTGTGGGCTTTGAAA
92806 GAGATGCCACTGACTTGTGGGCTTTGAAA
1 G-GATGCCACTGACTTGTGGGCTTTGAAA
* *
92835 GGATGCCATTGACCTGTGGGCTTTGAA
1 GGATGCCACTGACTTGTGGGCTTTGAA
92862 GAGATGAACG
Statistics
Matches: 301, Mismatches: 40, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.01
23 14 0.05
24 17 0.06
25 4 0.01
26 1 0.00
27 6 0.02
28 250 0.83
29 6 0.02
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (28 bp):
GGATGCCACTGACTTGTGGGCTTTGAAA
Found at i:93014 original size:28 final size:28
Alignment explanation
Indices: 92971--93163 Score: 199
Period size: 28 Copynumber: 6.7 Consensus size: 28
92961 AGAAGAAATG
92971 ACCCTTTCAAAGCCCACAAGTCAGTGGC
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
92999 ACCCTTTCAAAACCCATAAGTCAGTGGT
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* * *
93027 ACCCCTTCAAAGCCCACAAGTTAGTGGT
1 ACCCTTTCAAAGCCCACAAGTCAGTGGC
* *
93055 ACCTTTTCAAA-CCCAACAAGTTAGTGGC
1 ACCCTTTCAAAGCCC-ACAAGTCAGTGGC
* *
93083 ATACCCTTTCAAAGCCCACAATTCGGTGGC
1 --ACCCTTTCAAAGCCCACAAGTCAGTGGC
**
93113 ACCCTTTCAAAGCCCACACAAGTTGGTGGC
1 ACCCTTTCAAAG-CC-CACAAGTCAGTGGC
*
93143 AACTCTTTTCAAAGCCCACAA
1 -AC-CCTTTCAAAGCCCACAA
93164 CAAGTTAGTG
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
27 3 0.02
28 82 0.59
29 2 0.01
30 37 0.26
31 7 0.05
32 9 0.06
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (28 bp):
ACCCTTTCAAAGCCCACAAGTCAGTGGC
Found at i:93307 original size:45 final size:46
Alignment explanation
Indices: 93252--93380 Score: 152
Period size: 49 Copynumber: 2.8 Consensus size: 46
93242 ATCTTAAAGT
* * * *
93252 CCAATATCGCTGGCATTGAATCAGCATATTGGCACCTTT-ATTAGC
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTCATTAGC
* *
93297 CCAATGTCGCTGGCCTTGAATTAGCACATTGGTTCACTTTTCCCTTAGC
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGG--CACCTTT-CATTAGC
* *
93346 CCAATGTCGTTGGCCTTGAATTGGCACATTGGCAC
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCAC
93381 TCCTCTCATC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
45 28 0.39
47 9 0.12
49 35 0.49
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (46 bp):
CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTCATTAGC
Found at i:94121 original size:20 final size:20
Alignment explanation
Indices: 94096--94148 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
94086 TTTTACCGAG
* *
94096 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATGTATCA
*
94116 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATCA
94136 ATGTATCGATACA
1 ATGTATCGATACA
94149 ATCTATCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATGTATCA
Found at i:94195 original size:31 final size:32
Alignment explanation
Indices: 94136--94213 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 32
94126 ACATGTATGA
*
94136 ATGTATCGATACAATCTATCTTTTTTACCCAG
1 ATGTATCGATACATTCTATCTTTTTTACCCAG
* *
94168 ATGTATCGATACATTCTGTC-TTTTTACCTAG
1 ATGTATCGATACATTCTATCTTTTTTACCCAG
94199 ATGTATCGATACATT
1 ATGTATCGATACATT
94214 TTTCAATGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
31 25 0.58
32 18 0.42
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (32 bp):
ATGTATCGATACATTCTATCTTTTTTACCCAG
Found at i:94232 original size:51 final size:51
Alignment explanation
Indices: 94168--94264 Score: 167
Period size: 51 Copynumber: 1.9 Consensus size: 51
94158 TTTTACCCAG
* *
94168 ATGTATCGATACATTCTGTCTTTTTACCTAGATGTATCGATACATTTTTCA
1 ATGTATCGATACATTCTGTCCTTTTACCTAGATGTATCGACACATTTTTCA
*
94219 ATGTATCGATACATTTTGTCCTTTTACCTAGATGTATCGACACATT
1 ATGTATCGATACATTCTGTCCTTTTACCTAGATGTATCGACACATT
94265 GAATAACGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.43
Consensus pattern (51 bp):
ATGTATCGATACATTCTGTCCTTTTACCTAGATGTATCGACACATTTTTCA
Found at i:94276 original size:51 final size:51
Alignment explanation
Indices: 94170--94283 Score: 149
Period size: 51 Copynumber: 2.2 Consensus size: 51
94160 TTACCCAGAT
* * ** *
94170 GTATCGATACATTCTGTCTTTTTACCTAGATGTATCGATACATTTTTCAAT
1 GTATCGATACATTCTGTCCTTTTACCTAGATGTATCGACACATTAATCAAC
*
94221 GTATCGATACATTTTGTCCTTTTACCTAGATGTATCGACACATTGAAT-AAC
1 GTATCGATACATTCTGTCCTTTTACCTAGATGTATCGACACATT-AATCAAC
*
94272 GTATCAATACAT
1 GTATCGATACAT
94284 CTAGTTAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 54 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (51 bp):
GTATCGATACATTCTGTCCTTTTACCTAGATGTATCGACACATTAATCAAC
Done.