Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold162
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1959167
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.30
Warning! 205334 characters in sequence are not A, C, G, or T
File 1 of 12
Found at i:524 original size:31 final size:33
Alignment explanation
Indices: 459--526 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 33
449 GCCATTTGGG
*
459 ACAATGTATCGATACAATTTCTCATGTATCGAT
1 ACAATGTATCGATACAATTGCTCATGTATCGAT
*
492 ACAATGTATCGA-A-AATATGC-CATGTATTGAT
1 ACAATGTATCGATACAAT-TGCTCATGTATCGAT
523 ACAA
1 ACAA
527 ATAGTGGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 17 0.53
32 3 0.09
33 12 0.38
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32
Consensus pattern (33 bp):
ACAATGTATCGATACAATTGCTCATGTATCGAT
Found at i:1762 original size:50 final size:50
Alignment explanation
Indices: 1690--1839 Score: 219
Period size: 50 Copynumber: 2.9 Consensus size: 50
1680 CTAGATTACA
* * *
1690 TACATTGAAGAATGGTATCGATACATTGGGTCAAAACCCAGAATGTATAAT
1 TACAATGAAGAAT-GTATCGATACATTTGGACAAAACCCAGAATGTATAAT
* *
1741 TACAATGAAGAATGTATCGATACATTTGGACAAAACCTAGAATGTATCAT
1 TACAATGAAGAATGTATCGATACATTTGGACAAAACCCAGAATGTATAAT
*
1791 TACAATGAAGAATGTATCGATATATTTTGGACAAAAACCCAGAATGTAT
1 TACAATGAAGAATGTATCGATACA-TTTGGAC-AAAACCCAGAATGTAT
1840 CAATACATTT
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
50 56 0.62
51 19 0.21
52 15 0.17
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (50 bp):
TACAATGAAGAATGTATCGATACATTTGGACAAAACCCAGAATGTATAAT
Found at i:2277 original size:37 final size:38
Alignment explanation
Indices: 2187--2289 Score: 127
Period size: 37 Copynumber: 2.7 Consensus size: 38
2177 CAAAACTAAT
* * *
2187 AAGTCAAACAAGTTAAAAAGGTTGACCAAGATGAAATTTAC
1 AAGTC-AACAAGTTAAAGAGGTTGA-TAAGA-GAAATTGAC
* *
2228 AAGTAAATAAGTTAAAGAGGTTGATAAGA-AAATTGAC
1 AAGTCAACAAGTTAAAGAGGTTGATAAGAGAAATTGAC
2265 AAGTCAACAAGTTAAAGAGGTTGAT
1 AAGTCAACAAGTTAAAGAGGTTGAT
2290 TGGGATGAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
37 30 0.55
39 4 0.07
40 17 0.31
41 4 0.07
ACGTcount: A:0.49, C:0.08, G:0.20, T:0.23
Consensus pattern (38 bp):
AAGTCAACAAGTTAAAGAGGTTGATAAGAGAAATTGAC
Found at i:3213 original size:40 final size:40
Alignment explanation
Indices: 3127--3216 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
3117 TAAAACTGAT
* *
3127 AAGTCAACAAGTTAAAGAGGTTAACCAGGATGAAATCAAT
1 AAGTCAACAAGTTAAAGAGGTTAACCAAGATGAAATCAAC
* * * **
3167 AGGTCAACAAGTTAAAGAGGTTGACTAAGATGAAATTGAC
1 AAGTCAACAAGTTAAAGAGGTTAACCAAGATGAAATCAAC
3207 AAGTCAACAA
1 AAGTCAACAA
3217 AGAGTGACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (40 bp):
AAGTCAACAAGTTAAAGAGGTTAACCAAGATGAAATCAAC
Found at i:3216 original size:144 final size:143
Alignment explanation
Indices: 2976--3234 Score: 376
Period size: 144 Copynumber: 1.8 Consensus size: 143
2966 GACTAGGGCG
* *
2976 AAACTGATAAGTCAACAAGGTAAGGAGGTGACCAGGACGAAACCAACAAGTCAACAAGTTAAAGA
1 AAACTGATAAGTCAACAAGGTAAAGAGGTAACCAGGACGAAACCAACAAGTCAACAAGTTAAAGA
* * *
3041 GATTGATAAGGATGAAGCTGACAAGTCAACAAAGAGCGATTAGGGTAAAATCCAAGCCTAAATAA
66 GATTGATAAGGATGAAACTGACAAGTCAACAAAGAGCGACTAGAGTAAAATCCAAGCCTAAATAA
3106 GGTTATTAGGGTA
131 GGTTATTAGGGTA
* * * * *
3119 AAACTGATAAGTCAACAAGTTAAAGAGGTTAACCAGGATGAAATCAATAGGTCAACAAGTTAAAG
1 AAACTGATAAGTCAACAAGGTAAAGAGG-TAACCAGGACGAAACCAACAAGTCAACAAGTTAAAG
* * *
3184 AGGTTGACTAA-GATGAAATTGACAAGTCAACAAAGAGTGACTAGAGTAAAA
65 AGATTGA-TAAGGATGAAACTGACAAGTCAACAAAGAGCGACTAGAGTAAAA
3235 CTAAATTCAT
Statistics
Matches: 101, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
143 26 0.26
144 72 0.71
145 3 0.03
ACGTcount: A:0.46, C:0.13, G:0.23, T:0.19
Consensus pattern (143 bp):
AAACTGATAAGTCAACAAGGTAAAGAGGTAACCAGGACGAAACCAACAAGTCAACAAGTTAAAGA
GATTGATAAGGATGAAACTGACAAGTCAACAAAGAGCGACTAGAGTAAAATCCAAGCCTAAATAA
GGTTATTAGGGTA
Found at i:3249 original size:144 final size:142
Alignment explanation
Indices: 2878--3256 Score: 399
Period size: 143 Copynumber: 2.6 Consensus size: 142
2868 GATGAAACTG
* * * * *
2878 ACAAGTCAATAAGTTAAAGAGGTTGACTGAA-ACGAAGTTGACAAGTGAACAAAGATTGGCTA-A
1 ACAAGTCAACAAGTTAAAGAGGTTGACT-AAGATGAAGTTGACAAGTCAACAAAGAGTGACTAGA
* * * *
2941 GGTAAAACCTAAGTCAGAAT-GGGTTGACTAGGGCGAAACTGATAAGTCAACAAGGTAAGGAGGT
65 -GTAAAA-CTAA-TCATAATAAGGTTGACTAGGGCAAAACTGATAAGTCAACAAGGTAAAGAGGT
*
3005 GACCAGGACGAAACCA
127 AACCAGGACGAAACCA
* * * * *
3021 ACAAGTCAACAAGTTAAAGAGATTGA-TAAGGATGAAGCTGACAAGTCAACAAAGAGCGATTAGG
1 ACAAGTCAACAAGTTAAAGAGGTTGACTAA-GATGAAGTTGACAAGTCAACAAAGAGTGACTAGA
* * * * * *
3085 GTAAAATCCAAGCCTAAATAAGGTT-ATTAGGGTAAAACTGATAAGTCAACAAGTTAAAGAGGTT
65 GTAAAA-CTAATCAT-AATAAGGTTGACTAGGGCAAAACTGATAAGTCAACAAGGTAAAGAGG-T
* *
3149 AACCAGGATGAAATCA
127 AACCAGGACGAAACCA
* * *
3165 ATAGGTCAACAAGTTAAAGAGGTTGACTAAGATGAAATTGACAAGTCAACAAAGAGTGACTAGAG
1 ACAAGTCAACAAGTTAAAGAGGTTGACTAAGATGAAGTTGACAAGTCAACAAAGAGTGACTAGAG
3230 TAAAACTAAATTCATAATAAGGTTGAC
66 TAAAACT-AA-TCATAATAAGGTTGAC
3257 CATGTCGCAA
Statistics
Matches: 190, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
141 2 0.01
142 2 0.01
143 93 0.49
144 87 0.46
145 6 0.03
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.20
Consensus pattern (142 bp):
ACAAGTCAACAAGTTAAAGAGGTTGACTAAGATGAAGTTGACAAGTCAACAAAGAGTGACTAGAG
TAAAACTAATCATAATAAGGTTGACTAGGGCAAAACTGATAAGTCAACAAGGTAAAGAGGTAACC
AGGACGAAACCA
Found at i:5836 original size:15 final size:17
Alignment explanation
Indices: 5816--5852 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
5806 ATTGGCTTAA
5816 TTTTTCTT-T-CTCTCT
1 TTTTTCTTGTCCTCTCT
5831 TTTTTCTTGTCCTCTCT
1 TTTTTCTTGTCCTCTCT
5848 TTTTT
1 TTTTT
5853 TTACTGCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 1 0.05
17 11 0.55
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTCTTGTCCTCTCT
Found at i:7255 original size:84 final size:84
Alignment explanation
Indices: 7103--7257 Score: 192
Period size: 84 Copynumber: 1.8 Consensus size: 84
7093 GTTTGACCCT
* * *
7103 GGTCCTAATGCCAATATAGATCAAACGAAGGTGGAAAGAGTTTGATCAGTATTAATGCTAATACA
1 GGTCCTAATGCCAATATAGATCAAACGAAGGTGGAAAGAGTTTGACCAGTACTAACGCTAATACA
7168 GCCAAACAAAGGAAAACCA
66 GCCAAACAAAGGAAAACCA
* *
7187 GGTCTTAATGCCAATATAG-TCAAACGAGGGTGAGAAA-ACGTTTGACCAAG-ACTAACG-TCAA
1 GGTCCTAATGCCAATATAGATCAAACGAAGGTG-GAAAGA-GTTTGACC-AGTACTAACGCT-AA
*
7248 TATAGCCAAA
62 TACAGCCAAA
7258 TGAAGAAAGA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
83 14 0.23
84 45 0.74
85 2 0.03
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (84 bp):
GGTCCTAATGCCAATATAGATCAAACGAAGGTGGAAAGAGTTTGACCAGTACTAACGCTAATACA
GCCAAACAAAGGAAAACCA
Found at i:11329 original size:13 final size:13
Alignment explanation
Indices: 11288--11336 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
11278 CGTTACAAGC
11288 CAATGTATCGATA
1 CAATGTATCGATA
*
11301 CAAT-T-T-GGT-
1 CAATGTATCGATA
11310 C-ATGTATCGATA
1 CAATGTATCGATA
11322 CAATGTATCGATA
1 CAATGTATCGATA
11335 CA
1 CA
11337 TCTTGTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
8 2 0.07
9 2 0.07
10 3 0.10
11 3 0.10
12 2 0.07
13 17 0.59
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:11331 original size:34 final size:32
Alignment explanation
Indices: 11288--11356 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
11278 CGTTACAAGC
11288 CAATGTATCGATACAAT-TTGGTCATGTATCGATA
1 CAATGTATCGATAC-ATCTT-GT-ATGTATCGATA
11322 CAATGTATCGATACATCTTGTATGTATCGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
11354 CAA
1 CAA
11357 ACAGTTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
32 14 0.41
33 4 0.12
34 16 0.47
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:11454 original size:13 final size:13
Alignment explanation
Indices: 11436--11460 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11426 TACAGTGGTC
11436 ATGTATCGATACA
1 ATGTATCGATACA
11449 ATGTATCGATAC
1 ATGTATCGATAC
11461 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:12088 original size:92 final size:93
Alignment explanation
Indices: 11982--12170 Score: 335
Period size: 95 Copynumber: 2.0 Consensus size: 93
11972 AAGATTTTTC
**
11982 ATTTTCCTTTTCTCTCCCCCTTAATCAAAT-AAAAAATTTCTCCTTCTTAATAAAACAATTTCCT
1 ATTTTCCTTTTCTCTCCCCCTTAATCAAATAAAAAAATTTCTCCCCCTTAATAAAACAATTTCCT
12046 TTAATCACATGTTTCTTTTTCCCCCTTA
66 TTAATCACATGTTTCTTTTTCCCCCTTA
12074 ATTTTCCTTTTCTCTCCCCCTTAATCAAATAAAAAAAAATTTCTCCCCCTTAATAAAACAATTTC
1 ATTTTCCTTTTCTCTCCCCCTTAATCAAAT--AAAAAAATTTCTCCCCCTTAATAAAACAATTTC
12139 CTTTAATCACATGTTTCTTTTTCCCCCTTA
64 CTTTAATCACATGTTTCTTTTTCCCCCTTA
12169 AT
1 AT
12171 CATAAATTTA
Statistics
Matches: 92, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
92 30 0.33
95 62 0.67
ACGTcount: A:0.29, C:0.28, G:0.01, T:0.43
Consensus pattern (93 bp):
ATTTTCCTTTTCTCTCCCCCTTAATCAAATAAAAAAATTTCTCCCCCTTAATAAAACAATTTCCT
TTAATCACATGTTTCTTTTTCCCCCTTA
Found at i:13533 original size:20 final size:20
Alignment explanation
Indices: 13510--13563 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
13500 ACCCGGTTGT
13510 GACCTGGGAGTGCCGGTCAC
1 GACCTGGGAGTGCCGGTCAC
**
13530 GACCTGGGAGTGCCGGTCGT
1 GACCTGGGAGTGCCGGTCAC
13550 GACCTGGTGAGTGC
1 GACCTGG-GAGTGC
13564 TGCCTAGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 25 0.81
21 6 0.19
ACGTcount: A:0.13, C:0.26, G:0.43, T:0.19
Consensus pattern (20 bp):
GACCTGGGAGTGCCGGTCAC
Found at i:20118 original size:13 final size:13
Alignment explanation
Indices: 20077--20125 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
20067 CATTACAAGC
20077 CAATGTATCGATA
1 CAATGTATCGATA
*
20090 CAAT-T-T-GGT-
1 CAATGTATCGATA
20099 C-ATGTATCGATA
1 CAATGTATCGATA
20111 CAATGTATCGATA
1 CAATGTATCGATA
20124 CA
1 CA
20126 TCTTGTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
8 2 0.07
9 2 0.07
10 3 0.10
11 3 0.10
12 2 0.07
13 17 0.59
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:20120 original size:34 final size:32
Alignment explanation
Indices: 20077--20145 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
20067 CATTACAAGC
20077 CAATGTATCGATACAAT-TTGGTCATGTATCGATA
1 CAATGTATCGATAC-ATCTT-GT-ATGTATCGATA
20111 CAATGTATCGATACATCTTGTATGTATCGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
20143 CAA
1 CAA
20146 ACAGTTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
32 14 0.41
33 4 0.12
34 16 0.47
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:25462 original size:28 final size:28
Alignment explanation
Indices: 25427--25498 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
25417 GGAATAAAGC
**
25427 CAGGGTTGGAGTATCCCCTCGGAAATAA
1 CAGGGTTGGAGTATCCCCGAGGAAATAA
*
25455 CAGGGTTGGAGTATCCCCGATGAAATAA
1 CAGGGTTGGAGTATCCCCGAGGAAATAA
25483 C-GAGGTTGGAGTATCC
1 CAG-GGTTGGAGTATCC
25499 TCGATTGTGA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (28 bp):
CAGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:25556 original size:52 final size:52
Alignment explanation
Indices: 25486--25875 Score: 262
Period size: 51 Copynumber: 7.4 Consensus size: 52
25476 GAAATAACGA
*
25486 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGG
* * * *
25538 AGTTGGAGTATCCCCGATTAAAG-GGAAAATTGGT-GTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT---GTGAAAAATTGGTATTTTTGAAAATAAAATCGG
* * * * * *
25591 GGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAG-CAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTGAAAATAAAATCGG
* *** *
25643 GGTTGGAGTATCCCCGATTATGAAAAATCAATA-TTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGG
* * **** ** *
25694 GGTTGGAGTATCTCC--TCG-GAAATAACGGGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTATCCCCGATTGTGAAA-AA-----TT-G-GTATTTTTGAAAATAAAATCGG
** *
25749 GGTTGGAGTATCCTTGATTGTGAAGAAATTGGTATTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAA-AAATTGGTA-TTTTTGAAAATAAAATCGG
* * * *
25803 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGAAAATAAAATCGG
* *
25854 AGTTGGAATATCCCCGATTGTG
1 GGTTGGAGTATCCCCGATTGTG
25876 GAGAATTGAG
Statistics
Matches: 259, Mismatches: 54, Indels: 50
0.71 0.15 0.14
Matches are distributed among these distances:
48 4 0.02
49 3 0.01
50 4 0.02
51 71 0.27
52 63 0.24
53 51 0.20
54 32 0.12
55 16 0.06
56 3 0.01
57 6 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.31
Consensus pattern (52 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGG
Found at i:25596 original size:53 final size:52
Alignment explanation
Indices: 25486--25705 Score: 241
Period size: 52 Copynumber: 4.2 Consensus size: 52
25476 GAAATAACGA
* * * *
25486 GGTTGGAGTATCCTCGATT--GTGAAAAATTGGTATTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTAAG-GAAAAATTAGT-GTTTTGAAAATAAAACCGG
* * *
25538 AGTTGGAGTATCCCCGATTAAAGGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-AAGGAAAAATTAGTGTTTTGAAAATAAAACCGG
* *
25591 GGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTT-AGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAAGGAAAAATTAGTGTTTTGA-AAATAAAACCGG
* * * * **
25643 GGTTGGAGTATCCCCGATT-ATGAAAAATCAATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTAAGGAAAAATTAGTGTTTTGAAAATAAAACCGG
25694 GGTTGGAGTATC
1 GGTTGGAGTATC
25706 TCCTCGGAAA
Statistics
Matches: 145, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
51 35 0.24
52 64 0.44
53 35 0.24
54 10 0.07
55 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (52 bp):
GGTTGGAGTATCCCCGATTAAGGAAAAATTAGTGTTTTGAAAATAAAACCGG
Found at i:25636 original size:105 final size:103
Alignment explanation
Indices: 25486--25705 Score: 262
Period size: 105 Copynumber: 2.1 Consensus size: 103
25476 GAAATAACGA
* * * * *
25486 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTAGAAAATAAAACCGGAGTTGGAGTATCC
* *** *
25551 CCGATTAAAGGGAAAATTGGTGTTTTGAAAATAAAACCGG
66 CCGATT--AGGAAAAATCAATATTTTGAAAATAAAACCGG
* * *
25591 GGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAG-CAATAAAACCGGGGTTGGAGTATC
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTATTTTAGAAAATAAAACCGGAGTTGGAGTATC
* **
25655 CCCGATTATGAAAAATCAATATTTTGAAAATAAAGTCGG
65 CCCGATTAGGAAAAATCAATATTTTGAAAATAAAACCGG
25694 GGTTGGAGTATC
1 GGTTGGAGTATC
25706 TCCTCGGAAA
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
103 36 0.37
105 47 0.48
106 15 0.15
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (103 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTAGAAAATAAAACCGGAGTTGGAGTATCC
CCGATTAGGAAAAATCAATATTTTGAAAATAAAACCGG
Found at i:25754 original size:27 final size:27
Alignment explanation
Indices: 25691--25761 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
25681 AAAATAAAGT
25691 CGGGGTTGGAGTATCTCCTCGGAAATAA
1 CGGGGTTGGAGTATC-CCTCGGAAATAA
*
25719 CGGGGTTGGAGTATCCC-C-GATGATTAA
1 CGGGGTTGGAGTATCCCTCGGA--AATAA
25746 CGGGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
25762 TTGATTGTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
25 2 0.05
26 1 0.03
27 22 0.55
28 15 0.38
ACGTcount: A:0.21, C:0.18, G:0.35, T:0.25
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCTCGGAAATAA
Found at i:25780 original size:264 final size:263
Alignment explanation
Indices: 25377--25877 Score: 799
Period size: 264 Copynumber: 1.9 Consensus size: 263
25367 CAAAAATAAT
* **
25377 GGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCAGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGAAAATAAAGCCAGGGTTGGAGTATC
25442 CCCTCGGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGT
66 CCCTCGGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGT
*
25507 GAAAAATTGGTA-TTTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGGAAAATTGG
131 GAAAAATTGGTATTTTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA--GAAAATTAG
* *
25571 TGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAGCAATA
194 TGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGGAAAAATTAGTGTTTTAGCAATA
25636 AAACC
259 AAACC
* * *
25641 GGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGAAAATAAAGTCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGAAAATAAAGCCAGGGTTGGAGTATC
* * * * *
25706 TCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACGGGGTTGGAGTATCCTTGATTGT
66 CCCTCGGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGT
* *
25770 GAAGAAATTGGTATTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAGT
131 GAA-AAATTGGTATTTTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGT
* *
25835 GTTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGGA
195 GTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGGA
25878 GAATTGAGAA
Statistics
Matches: 217, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
263 77 0.35
264 101 0.47
265 39 0.18
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (263 bp):
GGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGAAAATAAAGCCAGGGTTGGAGTATC
CCCTCGGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGT
GAAAAATTGGTATTTTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTG
TTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTATGGAAAAATTAGTGTTTTAGCAATAAA
ACC
Found at i:28264 original size:33 final size:33
Alignment explanation
Indices: 28218--28284 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
28208 AAAATTTCCA
* ***
28218 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCAATACAAAGAAAAATGTATCGATAC
*
28251 AATGTATCAATACACAGAAAAATGTATCGATAC
1 AATGTATCAATACAAAGAAAAATGTATCGATAC
28284 A
1 A
28285 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.25
Consensus pattern (33 bp):
AATGTATCAATACAAAGAAAAATGTATCGATAC
Found at i:28328 original size:19 final size:19
Alignment explanation
Indices: 28304--28371 Score: 94
Period size: 19 Copynumber: 3.9 Consensus size: 19
28294 CAGTAGCTAA
28304 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
28323 TTATGTATCGATAC---A-
1 TTATGTATCGATACAAAAC
28338 -T-TGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
28355 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
28372 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 1 0.02
19 28 0.65
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:28344 original size:13 final size:13
Alignment explanation
Indices: 28326--28350 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28316 ACAAAACTTA
28326 TGTATCGATACAT
1 TGTATCGATACAT
28339 TGTATCGATACA
1 TGTATCGATACA
28351 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:28348 original size:32 final size:32
Alignment explanation
Indices: 28307--28369 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
28297 TAGCTAATTA
28307 TGTATCGATACAAAACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
28339 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
28370 AATTGTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:30704 original size:11 final size:11
Alignment explanation
Indices: 30688--30727 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
30678 TTAATTTTTC
30688 TTTTTCTCTCT
1 TTTTTCTCTCT
*
30699 TTTTTCTTTCTTT
1 TTTTTC--TCTCT
30712 TTTTTCTCTCT
1 TTTTTCTCTCT
30723 TTTTT
1 TTTTT
30728 TTCTACTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 15 0.60
13 10 0.40
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTCTCTCT
Found at i:30716 original size:13 final size:13
Alignment explanation
Indices: 30688--30731 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
30678 TTAATTTTTC
30688 TTTTTCTCTC--T
1 TTTTTCTCTCTTT
*
30699 TTTTTCTTTCTTT
1 TTTTTCTCTCTTT
30712 TTTTTCTCTCTTT
1 TTTTTCTCTCTTT
30725 TTTTTCT
1 TTTTTCT
30732 ACTTGCTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 9 0.31
13 20 0.69
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTCTCTCTTT
Found at i:31463 original size:165 final size:164
Alignment explanation
Indices: 31286--31836 Score: 560
Period size: 165 Copynumber: 3.3 Consensus size: 164
31276 AGAATATTAT
* ** * *
31286 ATGAATTTTAAAAATTTTAAACTGAGAAAAATCTCCAT-AAAACATTTACGGAGTAGAAAACTTG
1 ATGAATTTTAAAAATTATAAACCAAGAAAAATCCCCATAAAAACATTTACGGAGTAGCAAACTT-
* * *
31350 GTTTTTTGAAAATAAGAGAATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTTC
65 ATTTTTTGAAAAT-AGGGAATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTTT
* * *
31415 AAAACTGATTTACTATGAATTAAATGATGATGTTTA
129 AAAACTAATTTACTATGAATTAAATGATGATATTTG
* * *
31451 ATGAACTTTAAAAATTATAAACCAAGAAAAATCCCTC-TGAAAATATTTACGGAGTAGCAAA-TT
1 ATGAATTTTAAAAATTATAAACCAAGAAAAATCCC-CATAAAAACATTTACGGAGTAGCAAACTT
* * * ** **
31514 CCA-TATTTGAGAAATCGGGGAA-TTCTAAAAAAAAGAACAAAAAACTTACAAAAATAAATAAAT
65 --ATTTTTTGA-AAAT-AGGGAATTTC-AAAGAAAA-AATGAAAAACTTATGAAAATAAATAAAT
* *
31577 TTTTTAAAAATAATTTACTATGAATTAAATAATGATATTTG
124 TTTTTAAAACTAATTTACTATGAATTAAATGATGATATTTG
* * * * * * * * * *
31618 GTGAATATT-AAAATTTTGAACCTATAAAAA-CCCCTTCAAAAATATTTACAGAATAGCAAACTC
1 ATGAATTTTAAAAATTATAAACCAAGAAAAATCCCCAT-AAAAACATTTACGGAGTAGCAAACT-
* * *
31681 TATATTTCGAAAATAGGGAGATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATGAATTTTT
64 TATTTTTTGAAAATAGGGA-ATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTT
*
31746 TAAAACAAATTTACTATGAATTAAATGATGATATTTG
128 TAAAACTAATTTACTATGAATTAAATGATGATATTTG
* * * *
31783 ATGATTTTTAGAAATTATAAGCCAATAAAAATCCCCCA-AAAAACATTTACGGAG
1 ATGAATTTTAAAAATTATAAACCAAGAAAAAT-CCCCATAAAAACATTTACGGAG
31837 CTTTGCTACT
Statistics
Matches: 311, Mismatches: 59, Indels: 31
0.78 0.15 0.08
Matches are distributed among these distances:
164 1 0.00
165 117 0.38
166 115 0.37
167 73 0.23
168 5 0.02
ACGTcount: A:0.48, C:0.10, G:0.11, T:0.31
Consensus pattern (164 bp):
ATGAATTTTAAAAATTATAAACCAAGAAAAATCCCCATAAAAACATTTACGGAGTAGCAAACTTA
TTTTTTGAAAATAGGGAATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTTTAA
AACTAATTTACTATGAATTAAATGATGATATTTG
Found at i:31813 original size:166 final size:163
Alignment explanation
Indices: 31369--31832 Score: 531
Period size: 166 Copynumber: 2.8 Consensus size: 163
31359 AAATAAGAGA
* **
31369 ATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTTCAAAACTGATTTACTATGAA
1 ATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTTTAAAACAAATTTACTATGAA
* * * * * *
31434 TTAAATGATGATGTTTAATGAACTTTAAAAATTATAAACCAAGAAAAATCCCTCTGAAAATATTT
66 TTAAATGATGATATTTGATGAA-TTTTAAAATTAT-AACCAATAAAAACCCCTCTAAAAATATTT
* * * *
31499 ACGGAGTAGCAAATTCCATATTTGAGAAATCGGGG
129 ACAGAATAGCAAACTCCATATTTGAGAAATAGGGG
* * ** **
31534 AATTCTAAAAAAAAGAACAAAAAACTTACAAAAATAAATAAATTTTTTAAAA-ATAATTTACTAT
1 ATTTC-AAAGAAAA-AATGAAAAACTTATGAAAATAAATAAATTTTTTAAAACA-AATTTACTAT
* * * * *
31598 GAATTAAATAATGATATTTGGTGAATATTAAAATTTTGAACCTATAAAAACCCCT-TCAAAAATA
63 GAATTAAATGATGATATTTGATGAATTTTAAAATTAT-AACCAATAAAAACCCCTCT-AAAAATA
*
31662 TTTACAGAATAGCAAACTCTATATTTCGA-AAATAGGGAG
126 TTTACAGAATAGCAAACTCCATATTT-GAGAAATAGGG-G
*
31701 ATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATGAATTTTTTAAAACAAATTTACTATGAA
1 ATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTTTAAAACAAATTTACTATGAA
* * *
31766 TTAAATGATGATATTTGATGATTTTTAGAAATTATAAGCCAATAAAAATCCCC-CAAAAAACATT
66 TTAAATGATGATATTTGATGAATTTTA-AAATTATAA-CCAATAAAAA-CCCCTCTAAAAATATT
31830 TAC
128 TAC
31833 GGAGCTTTGC
Statistics
Matches: 247, Mismatches: 41, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
165 75 0.30
166 99 0.40
167 73 0.30
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (163 bp):
ATTTCAAAGAAAAAATGAAAAACTTATGAAAATAAATAAATTTTTTAAAACAAATTTACTATGAA
TTAAATGATGATATTTGATGAATTTTAAAATTATAACCAATAAAAACCCCTCTAAAAATATTTAC
AGAATAGCAAACTCCATATTTGAGAAATAGGGG
Found at i:34539 original size:97 final size:97
Alignment explanation
Indices: 34339--34521 Score: 260
Period size: 97 Copynumber: 1.9 Consensus size: 97
34329 CAACGATGAT
* *
34339 AATTTAGGCAAAAATAAGATTTAAATCTTGACAAATTTAAAAATAGAGTTAGAGTATCCCCTCAG
1 AATTTAAGCAAAAATAAGATTTAAATCTTGACAAATTTAAAAAAAGAGTTAGAGTATCCCCTCAG
* * *
34404 AAGAATGGAGTTTAAGTCTCTCCGATGATAAC
66 AAGAATGGAGTTGAAGTATCTCCGATAATAAC
* * *
34436 AATTTAAGCAAAAGTAAGATTTAAATCTTGACAAATTTAAAAACAAG-GTTGGAGTATCCCCTCG
1 AATTTAAGCAAAAATAAGATTTAAATCTTGACAAATTTAAAAA-AAGAGTTAGAGTATCCCCTCA
* *
34500 GAAGAATGGGGTTGGAGTATCT
65 GAAGAATGGAGTTGAAGTATCT
34522 TGATAAATAA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
97 74 0.97
98 2 0.03
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (97 bp):
AATTTAAGCAAAAATAAGATTTAAATCTTGACAAATTTAAAAAAAGAGTTAGAGTATCCCCTCAG
AAGAATGGAGTTGAAGTATCTCCGATAATAAC
Found at i:35609 original size:13 final size:13
Alignment explanation
Indices: 35591--35616 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35581 TACACAAAAT
35591 ATGTATCGATACA
1 ATGTATCGATACA
35604 ATGTATCGATACA
1 ATGTATCGATACA
35617 TAACGGCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:38392 original size:20 final size:21
Alignment explanation
Indices: 38367--38416 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
38357 CAACAACGTA
*
38367 TATCGATACAATAAG-GTATG
1 TATCGATACAATAAGTGAATG
*
38387 TATCGATA-TATAAGTGAATG
1 TATCGATACAATAAGTGAATG
*
38407 TATCAATACA
1 TATCGATACA
38417 TGCTTGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (21 bp):
TATCGATACAATAAGTGAATG
Found at i:38535 original size:52 final size:52
Alignment explanation
Indices: 38473--38609 Score: 163
Period size: 52 Copynumber: 2.7 Consensus size: 52
38463 TCTAGAAAGA
* *
38473 AAATGTATCAATACATTTTTTATTGTATCGATACATTCTGGGTTTTTGACCC
1 AAATGTATCAATACATTTTTTATTGTATCGATACATTCTAGGTTTTGGACCC
* * *
38525 AAATGTATCAATAC-TTTTTTCATTGTATAGATATATTTTAGGTTTTGGACCC
1 AAATGTATCAATACATTTTTT-ATTGTATCGATACATTCTAGGTTTTGGACCC
* * * *
38577 AAAT-TATCGATA-ATTCTTCAATGTATCGATACA
1 AAATGTATCAATACATTTTTTATTGTATCGATACA
38610 AATAGGTAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
50 11 0.15
51 17 0.24
52 44 0.61
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (52 bp):
AAATGTATCAATACATTTTTTATTGTATCGATACATTCTAGGTTTTGGACCC
Found at i:44441 original size:20 final size:20
Alignment explanation
Indices: 44416--44459 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
44406 TCAAGTTAAA
44416 ATAGGTATTTGTATCGATAC
1 ATAGGTATTTGTATCGATAC
44436 ATAGGTATTTGTATCGATAC
1 ATAGGTATTTGTATCGATAC
44456 ATAG
1 ATAG
44460 AAGGTTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (20 bp):
ATAGGTATTTGTATCGATAC
Found at i:52808 original size:21 final size:21
Alignment explanation
Indices: 52779--52819 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
52769 AAAGGTCACA
52779 ACCCTAGAAAGTATCGATACAG
1 ACCCTAG-AAGTATCGATACAG
52801 ACCC-AGAAGTATCGATACA
1 ACCCTAGAAGTATCGATACA
52820 TATTGCTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.68
21 2 0.11
22 4 0.21
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.17
Consensus pattern (21 bp):
ACCCTAGAAGTATCGATACAG
Found at i:52903 original size:13 final size:13
Alignment explanation
Indices: 52885--52915 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
52875 CGATACATGG
52885 TACATTGTAACGA
1 TACATTGTAACGA
*
52898 TACATTGTATCGA
1 TACATTGTAACGA
52911 TACAT
1 TACAT
52916 AATGAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTAACGA
Found at i:57314 original size:43 final size:43
Alignment explanation
Indices: 57253--57336 Score: 168
Period size: 43 Copynumber: 2.0 Consensus size: 43
57243 ATCATTATCC
57253 ATCAACTTTTGAATTAGAGCAAAAAGAAGCTAAATAGTTTTCT
1 ATCAACTTTTGAATTAGAGCAAAAAGAAGCTAAATAGTTTTCT
57296 ATCAACTTTTGAATTAGAGCAAAAAGAAGCTAAATAGTTTT
1 ATCAACTTTTGAATTAGAGCAAAAAGAAGCTAAATAGTTTT
57337 GTAAACTATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (43 bp):
ATCAACTTTTGAATTAGAGCAAAAAGAAGCTAAATAGTTTTCT
Found at i:61575 original size:445 final size:442
Alignment explanation
Indices: 60720--61609 Score: 1516
Period size: 445 Copynumber: 2.0 Consensus size: 442
60710 ATAGCAAAAA
*
60720 AAAGAAAAAAAAAGAATTACTTCAAAGTTTTGTATAAGATTATTTTTTTTTATCTTTTACTTTCA
1 AAAGAAAAAAAAAGAATTACTTCAAAGTTTTGTATAAGATTATTTTCTTTTATCTTTTACTTTCA
60785 TTTTGAATCTTATTTTCTTTTTTATGAGAGCTTGATATCCTAAACCATGCTTAAAGGATGATTTA
66 TTTTGAATCTTATTTTCTTTTTTATGAGAGCTTGATATCCTAAACCATGCTTAAAGGATGATTTA
* * *
60850 CACCTAGGTGTAAAAACTAGTTATAATCAAATCTTGAGCTATGACTTCAAAATGCTATCTTTTGT
131 CACC-AGGTATAAAAACTAGTTATAATCAAATCTTAAGCTATGACTTCAAAATGCTATATTTTGT
*
60915 TTTTCTTTGATTATTTTGGTAAAAGATTTCTTTAAAAATCAATATTCTGTGAAAAATTTCACAAA
195 TTTTCTTTGATTATTTTGGTAAAAGATTTCTTTAAAAATCAATATTCTATGAAAAATTTCACAAA
*
60980 GTTTTTATGTTGATTTTCTTAGTTTTTTTATGTGGTTTTCATCATGTATTTTCTATTGTTTTGAC
260 GTTTTTATGTTGATTTTCTTAG-TTTTTTATGTGGTTTTCATCATGTATTTCCTATTGTTTTGAC
*
61045 CATGATTTCACTTTTATATTACTTATATCTCAGGTTATGTATAATACATGCATTTTATGATCATG
324 CATGATTTCACTTTTATATTACTTATATCTCAGGTTATGTATAATACATGAATTTTATGATCATG
*
61110 ATTCATTTGTCTATGCATTCTTGATAAAAATATGATGATTAAGCCAACATCATC
389 ATTCATTTGTCTATGCATTCTCGATAAAAATATGATGATTAAGCCAACATCATC
61164 AAAGAAAAAAAAAGAATTACTTCAAAGTTTTGTATAAGATTATTTTCTTTTATCTTTTACTTTCA
1 AAAGAAAAAAAAAGAATTACTTCAAAGTTTTGTATAAGATTATTTTCTTTTATCTTTTACTTTCA
* ** *
61229 TTTTGAATCTTCTTTTCTTTTTTATGAGAGCTTGATATCCTAAGTCATGCTTAAATGATGATTTA
66 TTTTGAATCTTATTTTCTTTTTTATGAGAGCTTGATATCCTAAACCATGCTTAAAGGATGATTTA
**
61294 CACC-GGTATAAAAACTAGTTATGGTCAAATCTTAAGCTATGACTTCAAAATGCTATATTTTGTT
131 CACCAGGTATAAAAACTAGTTATAATCAAATCTTAAGCTATGACTTCAAAATGCTATATTTTGTT
* *
61358 TTTTTTTTATTATTTTGGTAAAA-AGTTTCTTTAAAAATCAATATTCTATGAAAAAGTTTGTTTC
196 TTTCTTTGATTATTTTGGTAAAAGA-TTTCTTTAAAAATCAATATTCTATGAAAAA-----TTTC
*
61422 ACAAAGTTTTTATGTTGATTTTCTTAG-TTTTTATGTGGTTTTCATCATGTATTTCCTCTTGTTT
255 ACAAAGTTTTTATGTTGATTTTCTTAGTTTTTTATGTGGTTTTCATCATGTATTTCCTATTGTTT
*
61486 TGACCATGATTTCACTTTTATATTACTTATATCTTAGGTTATGTATAATACATGAATTTTATGAT
320 TGACCATGATTTCACTTTTATATTACTTATATCTCAGGTTATGTATAATACATGAATTTTATGAT
*
61551 CATGATTCATTTGTCTATGCATTCTCGATAAAAATATGATGATTAAGCCAATATCATC
385 CATGATTCATTTGTCTATGCATTCTCGATAAAAATATGATGATTAAGCCAACATCATC
61609 A
1 A
61610 CGCATGTTAA
Statistics
Matches: 421, Mismatches: 19, Indels: 11
0.93 0.04 0.02
Matches are distributed among these distances:
441 1 0.00
442 105 0.25
444 129 0.31
445 155 0.37
447 31 0.07
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (442 bp):
AAAGAAAAAAAAAGAATTACTTCAAAGTTTTGTATAAGATTATTTTCTTTTATCTTTTACTTTCA
TTTTGAATCTTATTTTCTTTTTTATGAGAGCTTGATATCCTAAACCATGCTTAAAGGATGATTTA
CACCAGGTATAAAAACTAGTTATAATCAAATCTTAAGCTATGACTTCAAAATGCTATATTTTGTT
TTTCTTTGATTATTTTGGTAAAAGATTTCTTTAAAAATCAATATTCTATGAAAAATTTCACAAAG
TTTTTATGTTGATTTTCTTAGTTTTTTATGTGGTTTTCATCATGTATTTCCTATTGTTTTGACCA
TGATTTCACTTTTATATTACTTATATCTCAGGTTATGTATAATACATGAATTTTATGATCATGAT
TCATTTGTCTATGCATTCTCGATAAAAATATGATGATTAAGCCAACATCATC
Found at i:62052 original size:30 final size:30
Alignment explanation
Indices: 62016--62097 Score: 155
Period size: 30 Copynumber: 2.7 Consensus size: 30
62006 CTTAAAGACC
62016 ATTATGCAAATTCATGCATATTTAGGGATT
1 ATTATGCAAATTCATGCATATTTAGGGATT
62046 ATTATGCAAATTCATGCATATTTAGGGATT
1 ATTATGCAAATTCATGCATATTTAGGGATT
*
62076 ATTATGCAAATTCATGTATATT
1 ATTATGCAAATTCATGCATATT
62098 AAGGTTATTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (30 bp):
ATTATGCAAATTCATGCATATTTAGGGATT
Found at i:62224 original size:58 final size:57
Alignment explanation
Indices: 61882--62233 Score: 169
Period size: 58 Copynumber: 6.1 Consensus size: 57
61872 ATGCTTGTTA
* * * * * *
61882 TTTTCATTATTT-ATGACTATGTATGCAAATTCATGCA-TTCATGGTCATATTAGTCAT
1 TTTTCATGATTTAAAGACTAT-TATGCAAATTCATGCATTTTA-GGGCATTTTAATCAT
* * * * ** * * **** *
61939 TCTCCATGATTTAAGGATTATTATATAATTTAATGCATTTTAAAATAATTTTAACCAT
1 TTTTCATGATTTAAAGACTATTATGCAAATTCATGCATTTT-AGGGCATTTTAATCAT
* *
61997 TTTTCATGACTTAAAGACCATTATGCAAATTCATGCATATTTAGGG-ATTATT-ATGCA-
1 TTTTCATGATTTAAAGACTATTATGCAAATTCATGCAT-TTTAGGGCATT-TTAAT-CAT
** ** * * * ** *
62054 AATTCATGCATATTTAGGGATTATTATGCAAATTCATGTATATTAAGGTTATTATAA-CTAT
1 TTTTCATG---ATTTAAAGACTATTATGCAAATTCATGCAT-TTTAGGGCATTTTAATC-AT
** * * * **
62115 TTTTTGTGATTT-AAGAACTATTATGTAATTTCATGCATTTGAAGATCATTTTAATCAT
1 TTTTCATGATTTAAAG-ACTATTATGCAAATTCATGCATTT-TAGGGCATTTTAATCAT
* *
62173 TTTTCATGATTTAAAGACTATTATGGAAATTCATGCATTTTAGGGCAATTTTATTCAT
1 TTTTCATGATTTAAAGACTATTATGCAAATTCATGCATTTTAGGGC-ATTTTAATCAT
62231 TTT
1 TTT
62234 CCATAAATTA
Statistics
Matches: 215, Mismatches: 62, Indels: 35
0.69 0.20 0.11
Matches are distributed among these distances:
57 37 0.17
58 129 0.60
59 9 0.04
60 32 0.15
61 8 0.04
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.45
Consensus pattern (57 bp):
TTTTCATGATTTAAAGACTATTATGCAAATTCATGCATTTTAGGGCATTTTAATCAT
Found at i:64583 original size:16 final size:16
Alignment explanation
Indices: 64528--64583 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
64518 AAATAGATTA
* *
64528 AATTCTAATTAAATTTT
1 AATT-TAATTAAAATTC
**
64545 AATTTTTTTAAAATTC
1 AATTTAATTAAAATTC
64561 TAA-TTAATTAAAATTC
1 -AATTTAATTAAAATTC
64577 AATTTAA
1 AATTTAA
64584 AATTCCGATT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 2 0.06
16 23 0.74
17 6 0.19
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTAATTAAAATTC
Found at i:64994 original size:26 final size:28
Alignment explanation
Indices: 64965--65041 Score: 86
Period size: 31 Copynumber: 2.7 Consensus size: 28
64955 TATACATATC
64965 ATATATT-ATATATTTATATAAATTTT-
1 ATATATTAATATATTTATATAAATTTTG
64991 ATATATTAATAATTTATTTTATATAAATTTTG
1 ATATATTAAT-A--TA-TTTATATAAATTTTG
* *
65023 ATATATTCATATTTTTATA
1 ATATATTAATATATTTATA
65042 ATGTTCGTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
26 7 0.16
27 2 0.05
28 7 0.16
29 1 0.02
30 2 0.05
31 15 0.35
32 9 0.21
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (28 bp):
ATATATTAATATATTTATATAAATTTTG
Found at i:65685 original size:20 final size:18
Alignment explanation
Indices: 65642--65686 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
65632 TCCTCATATC
65642 AATTTTAATAAATACTTT
1 AATTTTAATAAATACTTT
*
65660 ATATTTTAATTAAAATAGTTT
1 A-ATTTTAA-T-AAATACTTT
65681 AATTTT
1 AATTTT
65687 TGTTAAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 1 0.04
19 7 0.30
20 6 0.26
21 9 0.39
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
AATTTTAATAAATACTTT
Found at i:66146 original size:16 final size:14
Alignment explanation
Indices: 66125--66160 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
66115 AATTGAATGA
66125 TTTTAAATTTAAATAT
1 TTTTAAATTT-AAT-T
66141 TTTTAAATTTAATT
1 TTTTAAATTTAATT
66155 TTTTAA
1 TTTTAA
66161 TTATTATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.35
15 3 0.15
16 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTTAAATTTAATT
Found at i:66196 original size:47 final size:48
Alignment explanation
Indices: 66100--66196 Score: 108
Period size: 47 Copynumber: 2.0 Consensus size: 48
66090 TCAAATTATT
* ** ** *
66100 TTTAATTTTTTAATTAATTGAATGATTTTAAATTTAAATATTTTTAAA
1 TTTAATTTTTTAATTAATTGAATCAAATTAAATTTAAATAAGTTCAAA
*
66148 TTTAATTTTTTAATT-ATT-ATATCAAATTAAATTTCAATAAGTTCAAA
1 TTTAATTTTTTAATTAATTGA-ATCAAATTAAATTTAAATAAGTTCAAA
66195 TT
1 TT
66197 CTTGACTTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 25 0.61
48 15 0.37
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (48 bp):
TTTAATTTTTTAATTAATTGAATCAAATTAAATTTAAATAAGTTCAAA
Found at i:67125 original size:30 final size:32
Alignment explanation
Indices: 67084--67143 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 32
67074 TCTTTGTATG
67084 GATGAATCCCTTACATTTTCT-TTGTCTCTAA
1 GATGAATCCCTTACATTTTCTCTTGTCTCTAA
* *
67115 GATG-ATCCCTTTCGTTTTCTCTTGTCTCT
1 GATGAATCCCTTACATTTTCTCTTGTCTCT
67144 TTTCCCATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.15, C:0.25, G:0.12, T:0.48
Consensus pattern (32 bp):
GATGAATCCCTTACATTTTCTCTTGTCTCTAA
Found at i:70495 original size:2 final size:2
Alignment explanation
Indices: 70488--70537 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
70478 TATCTTGTCC
70488 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
70530 AT GT AT AT
1 AT AT AT AT
70538 GCGCAAGCAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71565 original size:13 final size:14
Alignment explanation
Indices: 71535--71567 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
71525 ATGCAAGCAA
*
71535 TAACCTTGACACAC
1 TAACATTGACACAC
71549 TAACATTGACA-AC
1 TAACATTGACACAC
71562 TAACAT
1 TAACAT
71568 AGATTGGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.42, C:0.27, G:0.06, T:0.24
Consensus pattern (14 bp):
TAACATTGACACAC
Found at i:73737 original size:21 final size:20
Alignment explanation
Indices: 73713--73756 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
73703 ATTTAGTCAC
73713 ATTTTAGATATATAATTTTTA
1 ATTTTA-ATATATAATTTTTA
* *
73734 ATTTTTAATTTTTAATTTTTA
1 A-TTTTAATATATAATTTTTA
73755 AT
1 AT
73757 CAGAATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
20 1 0.05
21 14 0.70
22 5 0.25
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTTAATATATAATTTTTA
Found at i:73745 original size:6 final size:7
Alignment explanation
Indices: 73725--73756 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
73715 TTTAGATATA
73725 TAATTTT
1 TAATTTT
73732 TAATTTT
1 TAATTTT
73739 TAATTTT
1 TAATTTT
73746 TAATTTT
1 TAATTTT
73753 TAAT
1 TAAT
73757 CAGAATTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TAATTTT
Found at i:75172 original size:22 final size:22
Alignment explanation
Indices: 75147--75193 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
75137 AATTGGACGA
*
75147 GTTCGGACAGGTTCGGGTTCGG
1 GTTCGGACAGGTTCGAGTTCGG
* *
75169 GTTCGGGCAGGTTTGAGTTCGG
1 GTTCGGACAGGTTCGAGTTCGG
75191 GTT
1 GTT
75194 TGTTCGGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.15, G:0.45, T:0.32
Consensus pattern (22 bp):
GTTCGGACAGGTTCGAGTTCGG
Found at i:75181 original size:16 final size:16
Alignment explanation
Indices: 75163--75293 Score: 118
Period size: 16 Copynumber: 8.2 Consensus size: 16
75153 ACAGGTTCGG
**
75163 GTTCGGGTTCGGGCAG
1 GTTCGGGTTCGGGCTC
* * * *
75179 GTTTGAGTTCGGGTTT
1 GTTCGGGTTCGGGCTC
*
75195 GTTCGGGTTCTGGCTC
1 GTTCGGGTTCGGGCTC
*
75211 GTTCGGGTTCGGGCTT
1 GTTCGGGTTCGGGCTC
*
75227 GTTCGGGTTCGAGCTC
1 GTTCGGGTTCGGGCTC
* *
75243 GTTCGGGTTCGCGCTT
1 GTTCGGGTTCGGGCTC
* * *
75259 ATTCGGGTTTGAGCTC
1 GTTCGGGTTCGGGCTC
* *
75275 GTTCGGATTCGGACTC
1 GTTCGGGTTCGGGCTC
75291 GTT
1 GTT
75294 TGAATTCAGG
Statistics
Matches: 90, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 90 1.00
ACGTcount: A:0.05, C:0.20, G:0.38, T:0.37
Consensus pattern (16 bp):
GTTCGGGTTCGGGCTC
Found at i:75264 original size:48 final size:48
Alignment explanation
Indices: 75195--75319 Score: 128
Period size: 48 Copynumber: 2.6 Consensus size: 48
75185 GTTCGGGTTT
* ** * * *
75195 GTTCGGGTTCTGGCTCGTTCGGGTTCGGGCTTGTTCGGGTTC-GAGCTC
1 GTTCGGGTTCAGGCTTATTCGGGTTCGAGCTCGTTCGGATTCGGA-CTC
*
75243 GTTCGGGTTC-GCGCTTATTCGGGTTTGAGCTCGTTCGGATTCGGACTC
1 GTTCGGGTTCAG-GCTTATTCGGGTTCGAGCTCGTTCGGATTCGGACTC
* **
75291 GTTTGAATTCAGGCTTATTCGGGTTCGAG
1 GTTCGGGTTCAGGCTTATTCGGGTTCGAG
75320 TTTGAGTTCG
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.02
48 60 0.94
49 3 0.05
ACGTcount: A:0.08, C:0.21, G:0.35, T:0.36
Consensus pattern (48 bp):
GTTCGGGTTCAGGCTTATTCGGGTTCGAGCTCGTTCGGATTCGGACTC
Found at i:75340 original size:17 final size:18
Alignment explanation
Indices: 75308--75345 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
75298 TTCAGGCTTA
75308 TTCGGGTTCGAGTTTGAG
1 TTCGGGTTCGAGTTTGAG
* *
75326 TTCGGG-TCGATTTTGGG
1 TTCGGGTTCGAGTTTGAG
75343 TTC
1 TTC
75346 AGCATCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.08, C:0.13, G:0.37, T:0.42
Consensus pattern (18 bp):
TTCGGGTTCGAGTTTGAG
Found at i:75642 original size:73 final size:73
Alignment explanation
Indices: 75555--75752 Score: 324
Period size: 73 Copynumber: 2.7 Consensus size: 73
75545 TATTTACGTG
* *
75555 AATAAAAAATTTATTTCATATTTTAATCTAAATAAAAAATCATTAATTAATGAAGAACATAATGG
1 AATAAAAAATTTATTTCATATTTTAATCTAAATAAAAAATCATTAATTAATGAAGAACAAAATAG
*
75620 TCTAACCA
66 TCCAACCA
* * *
75628 AATAAGAAATTTATTTCATATTTTAATCAAAATAAAAAATTATTAATTAATGAAGAACAAAATAG
1 AATAAAAAATTTATTTCATATTTTAATCTAAATAAAAAATCATTAATTAATGAAGAACAAAATAG
75693 TCCAACCA
66 TCCAACCA
**
75701 AATAAAAAATTTATCCCATATTTTAATCTAAATAAAAAATCATTAATTAATG
1 AATAAAAAATTTATTTCATATTTTAATCTAAATAAAAAATCATTAATTAATG
75753 GTCCAACCAA
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 114 1.00
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.34
Consensus pattern (73 bp):
AATAAAAAATTTATTTCATATTTTAATCTAAATAAAAAATCATTAATTAATGAAGAACAAAATAG
TCCAACCA
Found at i:79534 original size:52 final size:52
Alignment explanation
Indices: 79464--79584 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
79454 GAAAATTTAT
* *
79464 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATAGATACATCTGGGCAAATTTGC
*
79516 CTGCATGTATCGATACATTTTATAATGTATAGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATAGATACATCTGGGCAAATTTGC
79568 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
79585 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATAGATACATCTGGGCAAATTTGC
Found at i:79597 original size:52 final size:51
Alignment explanation
Indices: 79464--79604 Score: 203
Period size: 52 Copynumber: 2.7 Consensus size: 51
79454 GAAAATTTAT
79464 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* * *
79516 CTGCATGTATCGATACATTTTATAATGTATAGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
79568 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
79605 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:79611 original size:13 final size:13
Alignment explanation
Indices: 79593--79617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79583 CAAAGATCAG
79593 TGTATCGATACAA
1 TGTATCGATACAA
79606 TGTATCGATACA
1 TGTATCGATACA
79618 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:82823 original size:15 final size:17
Alignment explanation
Indices: 82803--82838 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
82793 ATATTAACAT
82803 TATATT-CTATTCTAA-
1 TATATTGCTATTCTAAG
82818 TATATTGCTATTCTAAG
1 TATATTGCTATTCTAAG
82835 TATA
1 TATA
82839 ACATATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 9 0.47
17 4 0.21
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (17 bp):
TATATTGCTATTCTAAG
Found at i:83357 original size:16 final size:16
Alignment explanation
Indices: 83338--83373 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
83328 GGCTTTTTCA
*
83338 GGCTTTCCCGGGTTTG
1 GGCTTTCCCGAGTTTG
*
83354 GGCTTTCTCGAGTTTG
1 GGCTTTCCCGAGTTTG
83370 GGCT
1 GGCT
83374 ATTTTGGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.03, C:0.22, G:0.36, T:0.39
Consensus pattern (16 bp):
GGCTTTCCCGAGTTTG
Found at i:86749 original size:21 final size:20
Alignment explanation
Indices: 86682--86755 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
86672 AGAGTGGTTT
***
86682 TGTATCGATACATTTCAAGCA
1 TGTATCGATACA-TTCACTTA
86703 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
* * *
86723 TGTATCAATACATTTACTATT
1 TGTATCGATACATTCACT-TA
86744 TGTATCGATACA
1 TGTATCGATACA
86756 AATTGTAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 21 0.47
21 24 0.53
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:91692 original size:52 final size:52
Alignment explanation
Indices: 91614--91762 Score: 235
Period size: 52 Copynumber: 2.9 Consensus size: 52
91604 CGAAATATGA
*
91614 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATTGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
** *
91666 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
** *
91718 AAATTTGCCTGCATGTATCGATACAAAGATTAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACA
91763 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 87 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
Found at i:91769 original size:13 final size:13
Alignment explanation
Indices: 91751--91775 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91741 CAAAGATTAG
91751 TGTATCGATACAA
1 TGTATCGATACAA
91764 TGTATCGATACA
1 TGTATCGATACA
91776 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:91843 original size:20 final size:19
Alignment explanation
Indices: 91814--91882 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 19
91804 GCAGTAGCTT
91814 AAATTGTATCGATACAAAA
1 AAATTGTATCGATACAAAA
91833 AAATATGTATCGATAC----
1 AAAT-TGTATCGATACAAAA
91849 --ATTGTATCGATACAAAA
1 AAATTGTATCGATACAAAA
91866 AAATATGTATCGATACA
1 AAAT-TGTATCGATACA
91883 TTGTATCGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 15
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.26
14 2 0.05
19 6 0.14
20 23 0.55
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.29
Consensus pattern (19 bp):
AAATTGTATCGATACAAAA
Found at i:91853 original size:33 final size:33
Alignment explanation
Indices: 91816--91915 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
91806 AGTAGCTTAA
91816 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
91849 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
91882 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
91915 A
1 A
91916 AATCGTTGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:91856 original size:13 final size:13
Alignment explanation
Indices: 91838--91895 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 13
91828 CAAAAAAATA
91838 TGTATCGATACAT
1 TGTATCGATACAT
91851 TGTATCGATACAAAAAAAT
1 TGTATCGATAC------AT
91870 ATGTATCGATACAT
1 -TGTATCGATACAT
91884 TGTATCGATACA
1 TGTATCGATACA
91896 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 23 0.61
14 2 0.05
19 2 0.05
20 11 0.29
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:97688 original size:52 final size:52
Alignment explanation
Indices: 97540--97668 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
97530 CGAAATATGA
* *
97540 AAATTTGCTTGCATGTATCGATACATTTCATATTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
97592 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
97644 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
97669 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:97778 original size:19 final size:17
Alignment explanation
Indices: 97753--97895 Score: 102
Period size: 13 Copynumber: 8.9 Consensus size: 17
97743 TAGCGATACA
97753 TTGTATCGATACAAAACT
1 TTGTATCGATAC-AAACT
97771 TATGTATCGATAC--A--
1 T-TGTATCGATACAAACT
97785 TTGTATCGATACAACACT
1 TTGTATCGATACAA-ACT
97803 TATGTATCGATAC--A--
1 T-TGTATCGATACAAACT
97817 TTGTATCGATACAACACT
1 TTGTATCGATACAA-ACT
97835 TATGTATCGATAC--A--
1 T-TGTATCGATACAAACT
97849 TTGTATCGATACAACACT
1 TTGTATCGATACAA-ACT
97867 TCTGTATCGATAC--A--
1 T-TGTATCGATACAAACT
97881 TTGTATCGATACAAA
1 TTGTATCGATACAAA
97896 TCGTTGAAAT
Statistics
Matches: 104, Mismatches: 0, Indels: 45
0.70 0.00 0.30
Matches are distributed among these distances:
13 44 0.42
14 4 0.04
15 1 0.01
16 7 0.07
18 4 0.04
19 44 0.42
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (17 bp):
TTGTATCGATACAAACT
Found at i:97782 original size:32 final size:32
Alignment explanation
Indices: 97746--97894 Score: 280
Period size: 32 Copynumber: 4.7 Consensus size: 32
97736 AGCTTCGTAG
*
97746 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
97778 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
97810 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
97842 CGATACATTGTATCGATACAACACTTCTGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
97874 CGATACATTGTATCGATACAA
1 CGATACATTGTATCGATACAA
97895 ATCGTTGAAA
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 115 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:104143 original size:57 final size:58
Alignment explanation
Indices: 103990--104144 Score: 231
Period size: 58 Copynumber: 2.7 Consensus size: 58
103980 GCTTCATACT
* * * * * *
103990 CCCTTTTGTTCACTAGTTAAACCCTAACTTAGATCTAGCTTATCTTCTGTTAATAAGA
1 CCCTTTTGTTCACTAGTTAAAACCTAACTTAGATCTAGTTTATATGCAGTTAAAAAGA
* *
104048 CCCTTTTGTTCATTAGTTAAAACCTAATTTAGATCTAGTTTATATGCAGTTAAAAAGA
1 CCCTTTTGTTCACTAGTTAAAACCTAACTTAGATCTAGTTTATATGCAGTTAAAAAGA
104106 CCCTTTT-TTCACTAGTTAAAACCTAACTTAGATCTAGTT
1 CCCTTTTGTTCACTAGTTAAAACCTAACTTAGATCTAGTT
104145 ACCTTAAACA
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 30 0.34
58 57 0.66
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.40
Consensus pattern (58 bp):
CCCTTTTGTTCACTAGTTAAAACCTAACTTAGATCTAGTTTATATGCAGTTAAAAAGA
Found at i:105729 original size:18 final size:17
Alignment explanation
Indices: 105717--105756 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
105707 TAAAATTATT
105717 TTTAATTAAAAAATAATA
1 TTTAA-TAAAAAATAATA
*
105735 TTTAAT-AAAATTAATA
1 TTTAATAAAAAATAATA
105751 TTTAAT
1 TTTAAT
105757 TCTAACATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.71
17 1 0.05
18 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTAATAAAAAATAATA
Found at i:106178 original size:14 final size:14
Alignment explanation
Indices: 106159--106188 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
106149 CAAATCCATA
106159 ATAATAATTAGCGC
1 ATAATAATTAGCGC
*
106173 ATAATAATTAGTGC
1 ATAATAATTAGCGC
106187 AT
1 AT
106189 TATTAATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (14 bp):
ATAATAATTAGCGC
Found at i:106251 original size:35 final size:35
Alignment explanation
Indices: 106204--106275 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
106194 ATTTGAGCTT
* *
106204 TGGTTTAGTAAGACCTATACATGGTCAGGTTAGAA
1 TGGTTTAATAAGACCTATACATGGCCAGGTTAGAA
*
106239 TGGTTTAATAAGACCTATGCATGGCCAGGTTAGAA
1 TGGTTTAATAAGACCTATACATGGCCAGGTTAGAA
106274 TG
1 TG
106276 ATTTGAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (35 bp):
TGGTTTAATAAGACCTATACATGGCCAGGTTAGAA
Found at i:106364 original size:22 final size:22
Alignment explanation
Indices: 106318--106364 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
106308 ATTAAAATAT
* *
106318 TATTTTTATATTAATATTTATA
1 TATTTTTATATTAATAATTAAA
106340 TATTTTTATAATTAA-AATTAAA
1 TATTTTTAT-ATTAATAATTAAA
106362 TAT
1 TAT
106365 AAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TATTTTTATATTAATAATTAAA
Found at i:107613 original size:2 final size:2
Alignment explanation
Indices: 107600--107667 Score: 118
Period size: 2 Copynumber: 34.0 Consensus size: 2
107590 TTTGAAAGAA
* *
107600 AT AT AC AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107642 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
107668 CTGCTCAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:108120 original size:77 final size:79
Alignment explanation
Indices: 107992--108143 Score: 218
Period size: 78 Copynumber: 1.9 Consensus size: 79
107982 TATATATCGC
* *
107992 TAATTAATTTATATGAGAACTTTAGTCAAAATTCCCACCAAAAGATGCGTATGT-AAAAAGATGA
1 TAATTAATTTACATGAGAACTTTAGTCAAAATTCCAACCAAAAGATGCGTATGTAAAAAAGATGA
*
108056 TAATCTTGATGACA
66 CAATCTTGATGACA
** * * *
108070 TAATTAATTTACATGAGAA-TTTTTTTAAAATTCCAACCAAAGGATGCGTATGTAAAAAAGATGG
1 TAATTAATTTACATGAGAACTTTAGTCAAAATTCCAACCAAAAGATGCGTATGTAAAAAAGATGA
108134 CAATCTTGAT
66 CAATCTTGAT
108144 TATATATTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
77 29 0.45
78 36 0.55
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.32
Consensus pattern (79 bp):
TAATTAATTTACATGAGAACTTTAGTCAAAATTCCAACCAAAAGATGCGTATGTAAAAAAGATGA
CAATCTTGATGACA
Found at i:108823 original size:3 final size:3
Alignment explanation
Indices: 108810--108844 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
108800 CACTACCAAA
108810 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
108845 TTAGTTGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:115136 original size:79 final size:78
Alignment explanation
Indices: 114933--115497 Score: 490
Period size: 79 Copynumber: 7.2 Consensus size: 78
114923 GAAAAATTTA
* * *
114933 ATATTTTGGAGATAAAAATGGGGTTGGAGTATCTCCTCGAAAATAAC-GAGGTTGGAGTATCCCT
1 ATATTTT-GAAATAAAAATGGGGTTGAAGTATCTCCTCGAAAATAACGGA-GTTGGAGTATCCCC
*
114997 AATGGTGAAAAA-CTG
64 GATGGTGAAAAATC-G
** *
115012 ATATTTTGAAAT-AAAATCGGGGTT-AGAGTATCCTGTTAG-AAATAACGGAGTTGGAGTATCCC
1 ATATTTTGAAATAAAAAT-GGGGTTGA-AGTAT-CTCCTCGAAAATAACGGAGTTGGAGTATCCC
*
115074 CAATGGTGAAAAATCG
63 CGATGGTGAAAAATCG
*
115090 ATCTTTTAGAAATAAAAATGGGGTTGAAGTATCTCCTCGAAAATAACAGG-GTTGGAGTATCCCC
1 ATATTTT-GAAATAAAAATGGGGTTGAAGTATCTCCTCGAAAATAAC-GGAGTTGGAGTATCCCC
*
115154 GATGATGAAAAATCG
64 GATGGTGAAAAATCG
* * * * * *
115169 ATATTTTGGAAATAAAAACGGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCTCG
1 ATATTTT-GAAATAAAAATGGGGTTGAAGTATCTCCTCGAAAATAACGGAGTTGGAGTATCCCCG
* *
115234 ATAGTGAAAAATTG
65 ATGGTGAAAAATCG
* * * ** * * *
115248 ATATTTTAGAAATAAAAACGAGGTT-AGAGTATCCCCTAAAAAATAA-TGAGGTTAGAGTATCCT
1 ATATTTT-GAAATAAAAATGGGGTTGA-AGTATCTCCTCGAAAATAACGGA-GTTGGAGTATCCC
* * *
115311 CGATAGTAAAAAATTG
63 CGATGGTGAAAAATCG
* * * * **
115327 ATATTTTGGAAATGAAAACGAGGTTGGAGTATC-CCTTTAGAAATAACAGG-GTTGGAGTATCCC
1 ATATTTT-GAAATAAAAATGGGGTTGAAGTATCTCCTCGA-AAATAAC-GGAGTTGGAGTATCCC
115390 CGATGGTGAAAAATCG
63 CGATGGTGAAAAATCG
* * * * *
115406 ATATTTTGAAAATAAAAAT-GAGTTTAGAGTATTTCCTC-AGAAATAACGGGGTTGGAGTATCCT
1 ATATTTTG-AAATAAAAATGGGGTTGA-AGTATCTCCTCGA-AAATAACGGAGTTGGAGTATCCC
*
115469 TGATGGTGAAAAAATC-
63 CGATGGTG-AAAAATCG
115485 ATATTTTGGAAAT
1 ATATTTT-GAAAT
115498 GACAAAAAAA
Statistics
Matches: 411, Mismatches: 52, Indels: 46
0.81 0.10 0.09
Matches are distributed among these distances:
77 5 0.01
78 71 0.17
79 315 0.77
80 19 0.05
81 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (78 bp):
ATATTTTGAAATAAAAATGGGGTTGAAGTATCTCCTCGAAAATAACGGAGTTGGAGTATCCCCGA
TGGTGAAAAATCG
Found at i:115385 original size:237 final size:236
Alignment explanation
Indices: 114918--115497 Score: 709
Period size: 237 Copynumber: 2.4 Consensus size: 236
114908 AGTATATTCC
** * *
114918 ATGATGAAAAATTTAATATTTTGGAGATAAAAATGGGGTTGGAGTATCTCCTCGAAAATAACGAG
1 ATGATGAAAAA-TCGATATTTTGGAAATAAAAATGGGGTTGGAGTATCTCCTCGAAAATAACGGG
* * * * **
114983 GTTGGAGTATCC-CTAATGGTGAAAAACTGATATTTTGAAATAAAATCGGGGTTAGAGTATCCTG
65 GTTGGAGTATCCTC-GATGGTGAAAAAATGATATTTTGAAATAAAAACGAGGTTAGAGTATCCCC
* * * * * * * *
115047 TTAGAAATAACGGAGTTGGAGTATCCCCAATGGTGAAAAATCGATCTTTTAGAAATAAAAATGGG
129 TAAAAAATAACGGAGTTAGAGTATCCCCAATAGTAAAAAATCGATATTTTAGAAATAAAAACGAG
115112 GTTGAAGTATCTCCTCGAAAATAACAGGGTTGGAGTATCCCCG
194 GTTGAAGTATCTCCTCGAAAATAACAGGGTTGGAGTATCCCCG
* * *
115155 ATGATGAAAAATCGATATTTTGGAAATAAAAACGGGGTTGGAGTATCCCCTCGAAAATAATGGGG
1 ATGATGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATCTCCTCGAAAATAACGGGG
* *
115220 TTGGAGTATCCTCGATAGTGAAAAATTGATATTTTAGAAATAAAAACGAGGTTAGAGTATCCCCT
66 TTGGAGTATCCTCGATGGTGAAAAAATGATATTTT-GAAATAAAAACGAGGTTAGAGTATCCCCT
* * * * * *
115285 AAAAAATAA-TGAGGTTAGAGTATCCTCGATAGTAAAAAATTGATATTTTGGAAATGAAAACGAG
130 AAAAAATAACGGA-GTTAGAGTATCCCCAATAGTAAAAAATCGATATTTTAGAAATAAAAACGAG
* **
115349 GTTGGAGTATC-CCTTTAGAAATAACAGGGTTGGAGTATCCCCG
194 GTTGAAGTATCTCCTCGA-AAATAACAGGGTTGGAGTATCCCCG
* * * * * *
115392 ATGGTGAAAAATCGATATTTTGAAAATAAAAATGAGTTTAGAGTATTTCCTC-AGAAATAACGGG
1 ATGATGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATCTCCTCGA-AAATAACGGG
* *
115456 GTTGGAGTATCCTTGATGGTGAAAAAATCATATTTTGGAAAT
65 GTTGGAGTATCCTCGATGGTGAAAAAATGATATTTT-GAAAT
115498 GACAAAAAAA
Statistics
Matches: 293, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
236 84 0.29
237 209 0.71
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (236 bp):
ATGATGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATCTCCTCGAAAATAACGGGG
TTGGAGTATCCTCGATGGTGAAAAAATGATATTTTGAAATAAAAACGAGGTTAGAGTATCCCCTA
AAAAATAACGGAGTTAGAGTATCCCCAATAGTAAAAAATCGATATTTTAGAAATAAAAACGAGGT
TGAAGTATCTCCTCGAAAATAACAGGGTTGGAGTATCCCCG
Found at i:115498 original size:158 final size:157
Alignment explanation
Indices: 114933--115499 Score: 641
Period size: 158 Copynumber: 3.6 Consensus size: 157
114923 GAAAAATTTA
* * * * **
114933 ATATTTTGGAGATAAAAATGGGGTTGGAGTATCTCCTCGAAAATAACGAGGTTGGAGTATCCCTA
1 ATATTTTAGAAATAAAAATGAGGTTAGAGTATCTCCTCGAAAATAACGAGGTTGGAGTATCCCCG
* * *
114998 ATGGTGAAAAACTGATATTTT-GAAAT-AAAATCGGGGTTAGAGTAT-CCTGTTAGAAATAACGG
66 ATGGTGAAAAAATCATATTTTGGAAATGAAAA-CGGGGTTGGAGTATCCCT-TTAGAAATAACGG
*
115060 AGTTGGAGTATCCCCAATGGTGAAAAATCG
129 -GTTGGAGTATCCCCGATGGTGAAAAATCG
* *
115090 ATCTTTTAGAAATAAAAATGGGGTT-GAAGTATCTCCTCGAAAATAAC-AGGGTTGGAGTATCCC
1 ATATTTTAGAAATAAAAATGAGGTTAG-AGTATCTCCTCGAAAATAACGA-GGTTGGAGTATCCC
* * * *
115153 CGATGATG-AAAAATCGATATTTTGGAAATAAAAACGGGGTTGGAGTATCCC-CTCGAAAATAAT
64 CGATGGTGAAAAAATC-ATATTTTGGAAATGAAAACGGGGTTGGAGTATCCCTTTAG-AAATAA-
* * * *
115216 GGGGTTGGAGTATCCTCGATAGTGAAAAATTG
126 CGGGTTGGAGTATCCCCGATGGTGAAAAATCG
* * ** * * *
115248 ATATTTTAGAAATAAAAACGAGGTTAGAGTATCCCCTAAAAAATAATGAGGTTAGAGTATCCTCG
1 ATATTTTAGAAATAAAAATGAGGTTAGAGTATCTCCTCGAAAATAACGAGGTTGGAGTATCCCCG
* * *
115313 ATAGT-AAAAAATTGATATTTTGGAAATGAAAACGAGGTTGGAGTATCCCTTTAGAAATAACAGG
66 ATGGTGAAAAAA-TCATATTTTGGAAATGAAAACGGGGTTGGAGTATCCCTTTAGAAATAAC-GG
115377 GTTGGAGTATCCCCGATGGTGAAAAATCG
129 GTTGGAGTATCCCCGATGGTGAAAAATCG
* * * *
115406 ATATTTT-GAAAATAAAAATGAGTTTAGAGTATTTCCTC-AGAAATAACGGGGTTGGAGTATCCT
1 ATATTTTAG-AAATAAAAATGAGGTTAGAGTATCTCCTCGA-AAATAACGAGGTTGGAGTATCCC
*
115469 TGATGGTGAAAAAATCATATTTTGGAAATGA
64 CGATGGTGAAAAAATCATATTTTGGAAATGA
115500 CAAAAAAATC
Statistics
Matches: 346, Mismatches: 47, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
156 7 0.02
157 72 0.21
158 248 0.72
159 19 0.05
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (157 bp):
ATATTTTAGAAATAAAAATGAGGTTAGAGTATCTCCTCGAAAATAACGAGGTTGGAGTATCCCCG
ATGGTGAAAAAATCATATTTTGGAAATGAAAACGGGGTTGGAGTATCCCTTTAGAAATAACGGGT
TGGAGTATCCCCGATGGTGAAAAATCG
Found at i:117762 original size:20 final size:20
Alignment explanation
Indices: 117730--117786 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
117720 CAAAAACCTA
117730 AAATGTAAT-GATACAATAAG
1 AAATGT-ATCGATACAATAAG
* * *
117750 AAATGTATCGATATAATTAT
1 AAATGTATCGATACAATAAG
117770 AAGCATGTATCGATACA
1 AA--ATGTATCGATACA
117787 TTTACTTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 16 0.53
22 12 0.40
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (20 bp):
AAATGTATCGATACAATAAG
Found at i:117869 original size:20 final size:20
Alignment explanation
Indices: 117841--117890 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
117831 TTTTGTATTG
*
117841 TACATTTTAGGCATGTATCAA
1 TACA-TTTACGCATGTATCAA
* *
117862 TACATTTACGTATGTATCGA
1 TACATTTACGCATGTATCAA
117882 TACATTTAC
1 TACATTTAC
117891 TATTTGTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
TACATTTACGCATGTATCAA
Found at i:117900 original size:21 final size:20
Alignment explanation
Indices: 117853--117906 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
117843 CATTTTAGGC
117853 ATGTATCAATACATTTACGT
1 ATGTATCAATACATTTACGT
*
117873 ATGTATCGATACATTTAC-T
1 ATGTATCAATACATTTACGT
117892 ATTTGTATCAATACA
1 A--TGTATCAATACA
117907 AATTGTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 17 0.57
21 11 0.37
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (20 bp):
ATGTATCAATACATTTACGT
Found at i:122498 original size:25 final size:28
Alignment explanation
Indices: 122470--122527 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 28
122460 TTAGTTTTGC
122470 TAAAGAA-TAAATTAAAT-T-TTAAAAA
1 TAAAGAATTAAATTAAATGTATTAAAAA
122495 TAAA-AATTAAATTAAATGTATTAAAAA
1 TAAAGAATTAAATTAAATGTATTAAAAA
122522 -AAAGAA
1 TAAAGAA
122528 AATACAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 2 0.07
25 14 0.48
26 4 0.14
27 9 0.31
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (28 bp):
TAAAGAATTAAATTAAATGTATTAAAAA
Found at i:122928 original size:17 final size:17
Alignment explanation
Indices: 122902--122935 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
122892 CATACACAAG
122902 AATGAAAAAAA-TAAAA
1 AATGAAAAAAATTAAAA
122918 AATGAAAAAAAATTAAAA
1 AATG-AAAAAAATTAAAA
122936 CAAATATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (17 bp):
AATGAAAAAAATTAAAA
Found at i:126736 original size:19 final size:19
Alignment explanation
Indices: 126708--126764 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
126698 TTGTATTGAT
* *
126708 ACATTATATCGATACATGT
1 ACATTGTATCGATACATGC
* *
126727 TCATTGTATCAATACATGC
1 ACATTGTATCGATACATGC
126746 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
126765 AAACTGACAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:126818 original size:20 final size:20
Alignment explanation
Indices: 126793--126860 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
126783 CTACCACTGT
126793 TTGTATCGATACATTACGAA
1 TTGTATCGATACATTACGAA
126813 TTGTATCG----A-TAC-AA
1 TTGTATCGATACATTACGAA
126827 -TGTATCGATACATTACGAA
1 TTGTATCGATACATTACGAA
126846 TTGTATCGATACATT
1 TTGTATCGATACATT
126861 GTCCCAAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 7 0.17
14 2 0.05
15 3 0.07
16 1 0.02
17 1 0.02
18 3 0.07
19 2 0.05
20 22 0.54
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATTACGAA
Found at i:126832 original size:13 final size:13
Alignment explanation
Indices: 126814--126838 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
126804 CATTACGAAT
126814 TGTATCGATACAA
1 TGTATCGATACAA
126827 TGTATCGATACA
1 TGTATCGATACA
126839 TTACGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:126836 original size:33 final size:33
Alignment explanation
Indices: 126794--126858 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
126784 TACCACTGTT
126794 TGTATCGATACATTACGAATTGTATCGATACAA
1 TGTATCGATACATTACGAATTGTATCGATACAA
126827 TGTATCGATACATTACGAATTGTATCGATACA
1 TGTATCGATACATTACGAATTGTATCGATACA
126859 TTGTCCCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATTACGAATTGTATCGATACAA
Found at i:131103 original size:19 final size:20
Alignment explanation
Indices: 131079--131132 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
131069 ACATTATGAT
**
131079 TTGTATCGATACATGTTC-A
1 TTGTATCGATACATGCACAA
131098 TTGTATCGATACATGCACAA
1 TTGTATCGATACATGCACAA
131118 TTGTATCGATACATG
1 TTGTATCGATACATG
131133 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGCACAA
Found at i:135373 original size:13 final size:13
Alignment explanation
Indices: 135355--135379 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
135345 ACAATGAACA
135355 TGTATCGATACAT
1 TGTATCGATACAT
135368 TGTATCGATACA
1 TGTATCGATACA
135380 AAGCATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:135399 original size:33 final size:32
Alignment explanation
Indices: 135336--135401 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 32
135326 TAATTGTCCA
* *
135336 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATATATCGATACAT
135368 TGTATCGATACAAAGCATA-ATATATCGATACAT
1 TGTATCGATACAAAG-A-ACATATATCGATACAT
135401 T
1 T
135402 TGGGTGTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATATATCGATACAT
Found at i:138555 original size:14 final size:14
Alignment explanation
Indices: 138536--138562 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
138526 AACAAAAAAA
138536 GATTATTTTTGATG
1 GATTATTTTTGATG
138550 GATTATTTTTGAT
1 GATTATTTTTGAT
138563 AAAAAAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (14 bp):
GATTATTTTTGATG
Found at i:139372 original size:9 final size:9
Alignment explanation
Indices: 139347--139385 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
139337 GCAATATGAT
139347 TTTTCTCTTC
1 TTTT-TCTTC
* *
139357 TTCTTCTTT
1 TTTTTCTTC
139366 TTTTTCTTC
1 TTTTTCTTC
139375 TTTTTCTTC
1 TTTTTCTTC
139384 TT
1 TT
139386 CTTCATCTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
9 22 0.88
10 3 0.12
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:139374 original size:12 final size:12
Alignment explanation
Indices: 139354--139388 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
139344 GATTTTTCTC
139354 TTCTTCTTCTTT
1 TTCTTCTTCTTT
*
139366 TTTTTCTTCTTT
1 TTCTTCTTCTTT
139378 TTCTTCTTCTT
1 TTCTTCTTCTT
139389 CATCTATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTCTTCTTCTTT
Found at i:140664 original size:20 final size:20
Alignment explanation
Indices: 140639--140697 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
140629 ACTACCAAGG
*
140639 AAATGTATTGATACATTATT
1 AAATGTATCGATACATTATT
**
140659 AAATGTATCGATACATGCTT
1 AAATGTATCGATACATTATT
140679 ACAATTGTATCGATACATT
1 A-AA-TGTATCGATACATT
140698 TCTCATTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 18 0.55
21 2 0.06
22 13 0.39
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (20 bp):
AAATGTATCGATACATTATT
Found at i:144636 original size:50 final size:51
Alignment explanation
Indices: 144582--144688 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
144572 ACAATAAATG
* * * **
144582 TATCGACATATTTTGTTTTTTTACC-AGATGTATTGATACATTTTTCAATA
1 TATCGACATATTCTATATTTTTACCTAGATGTATCAATACATTTTTCAATA
* *
144632 TATCGATATATTCTATATTTTTACCTAGATGTATCAATACATTTTTTAATA
1 TATCGACATATTCTATATTTTTACCTAGATGTATCAATACATTTTTCAATA
144683 TATCGA
1 TATCGA
144689 TACATCTAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 21 0.43
51 28 0.57
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (51 bp):
TATCGACATATTCTATATTTTTACCTAGATGTATCAATACATTTTTCAATA
Found at i:149367 original size:21 final size:21
Alignment explanation
Indices: 149341--149416 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
149331 CTGCCAAGAA
149341 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
149362 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
149382 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
149403 ATGTATCGATACAT
1 ATGTATCGATACAT
149417 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:149386 original size:20 final size:20
Alignment explanation
Indices: 149361--149434 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
149351 ACATCTTTTT
149361 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
149381 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
149402 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
149422 CATGTATCGATAC
1 CATGTATCGATAC
149435 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:149398 original size:41 final size:41
Alignment explanation
Indices: 149341--149434 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
149331 CTGCCAAGAA
149341 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
149382 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
149423 ATGTATCGATAC
1 ATGTATCGATAC
149435 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:151903 original size:13 final size:13
Alignment explanation
Indices: 151885--151923 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
151875 ATAATCACCC
*
151885 TGTATCGATACAG
1 TGTATCGATACAA
151898 TGTATCGATACAA
1 TGTATCGATACAA
151911 TGTATCGATACAA
1 TGTATCGATACAA
151924 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:151934 original size:20 final size:20
Alignment explanation
Indices: 151909--151987 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
151899 GTATCGATAC
151909 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
151929 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
151954 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
151974 CATGTATCGATACA
1 AATGTATCGATACA
151988 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:155865 original size:21 final size:21
Alignment explanation
Indices: 155836--155880 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
155826 AAGTTTTCAT
*
155836 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
155856 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
155878 TTT
1 TTT
155881 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:157829 original size:13 final size:13
Alignment explanation
Indices: 157811--157836 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
157801 CAATTTTTTG
157811 TGTATCGATACAT
1 TGTATCGATACAT
157824 TGTATCGATACAT
1 TGTATCGATACAT
157837 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:157901 original size:21 final size:21
Alignment explanation
Indices: 157875--157950 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
157865 CTGCCAAGAA
157875 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
157896 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
157916 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
157937 ATGTATCGATACAT
1 ATGTATCGATACAT
157951 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:157920 original size:20 final size:20
Alignment explanation
Indices: 157895--157968 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
157885 ACATCTTTTT
157895 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
157915 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
157936 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
157956 CATGTATCGATAC
1 CATGTATCGATAC
157969 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:157932 original size:41 final size:41
Alignment explanation
Indices: 157875--157968 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
157865 CTGCCAAGAA
157875 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
157916 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
157957 ATGTATCGATAC
1 ATGTATCGATAC
157969 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:170368 original size:79 final size:79
Alignment explanation
Indices: 170251--170573 Score: 319
Period size: 79 Copynumber: 4.1 Consensus size: 79
170241 CATTCCCCGA
* * ** * *
170251 TGAAAAATTTAATGTTTTAGAGATAAAAATGG-GTTTGGAGTATCCCCTC-GAAAATGATGGGGT
1 TGAAAAA-TTGATGTTTTAGAAATAAAACCGGCG-TTGGAGTATCCCCTCAG-AAATAACGGGGT
* * *
170314 TGAAGTATCCGCTATGG
63 TGAAGTATCCCCAATTG
* * * * *
170331 TGGAAAATCGATGTTTTGGAAATAAAACTGGCGTTGGAGTATTCCCTCAGAAATAACGGGGTTGA
1 TGAAAAATTGATGTTTTAGAAATAAAACCGGCGTTGGAGTATCCCCTCAGAAATAACGGGGTTGA
*
170396 AGTATCCCCAATTA
66 AGTATCCCCAATTG
* * * *
170410 TGAAAAATTGATGTTTT-GAAACAAAGCCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGA
1 TGAAAAATTGATGTTTTAGAAATAAAACCGGCGTTGGAGTATCCCCTCAGAAATAACGGGGTTGA
*
170474 AGTATCCCCGATTG
66 AGTATCCCCAATTG
* * * * * *
170488 TGAAAAATTGATGTTTTTAAAAATAAAGCCGACGTTAGAGTATCCCCTCGGAAATGACGGGGTTG
1 TGAAAAATTGATG-TTTTAGAAATAAAACCGGCGTTGGAGTATCCCCTCAGAAATAACGGGGTTG
* * *
170553 GAGTATTCCCGATTG
65 AAGTATCCCCAATTG
170568 TAGAAA
1 T-GAAA
170574 TTTGGTGTAT
Statistics
Matches: 205, Mismatches: 33, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
78 66 0.32
79 75 0.37
80 60 0.29
81 4 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
TGAAAAATTGATGTTTTAGAAATAAAACCGGCGTTGGAGTATCCCCTCAGAAATAACGGGGTTGA
AGTATCCCCAATTG
Found at i:170558 original size:80 final size:78
Alignment explanation
Indices: 170285--170573 Score: 328
Period size: 78 Copynumber: 3.7 Consensus size: 78
170275 AAAAATGGGT
* * * * * * *
170285 TTGGAGTATCCCCTC-GAAAATGATGGGGTTGAAGTATCCGCTATGGTGGAAAATCGATGTTTTG
1 TTGGAGTATCCCCTCAG-AAATAACGGGGTTGAAGTATCCCCGATTGTGAAAAATTGATGTTTT-
* *
170349 GAAATAAAACTGGCG
64 GAAATAAAGCCGGCG
* * *
170364 TTGGAGTATTCCCTCAGAAATAACGGGGTTGAAGTATCCCCAATTATGAAAAATTGATGTTTTGA
1 TTGGAGTATCCCCTCAGAAATAACGGGGTTGAAGTATCCCCGATTGTGAAAAATTGATGTTTTGA
* *
170429 AACAAAGCCGGGG
66 AATAAAGCCGGCG
*
170442 TTGGAGTATCCCCTCAGAAATAACAGGGTTGAAGTATCCCCGATTGTGAAAAATTGATGTTTTTA
1 TTGGAGTATCCCCTCAGAAATAACGGGGTTGAAGTATCCCCGATTGTGAAAAATTGATG-TTTT-
* *
170507 AAAATAAAGCCGACG
64 GAAATAAAGCCGGCG
* * * * *
170522 TTAGAGTATCCCCTCGGAAATGACGGGGTTGGAGTATTCCCGATTGTAGAAA
1 TTGGAGTATCCCCTCAGAAATAACGGGGTTGAAGTATCCCCGATTGT-GAAA
170574 TTTGGTGTAT
Statistics
Matches: 179, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 66 0.37
79 56 0.31
80 53 0.30
81 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (78 bp):
TTGGAGTATCCCCTCAGAAATAACGGGGTTGAAGTATCCCCGATTGTGAAAAATTGATGTTTTGA
AATAAAGCCGGCG
Found at i:173082 original size:50 final size:50
Alignment explanation
Indices: 173019--173126 Score: 146
Period size: 50 Copynumber: 2.2 Consensus size: 50
173009 AAAATGCCTT
* *
173019 AATGTATCGATACATTC-AGAAATGTATCGATACATCTAGGTAAAACCCAA
1 AATGTATCAATACATTCAAG-AATATATCGATACATCTAGGTAAAACCCAA
* * * *
173069 AATGTATCAATACATTGAAGAATATATCGATACATCTGGGTTAAACCCAG
1 AATGTATCAATACATTCAAGAATATATCGATACATCTAGGTAAAACCCAA
173119 AATGTATC
1 AATGTATC
173127 GATATAATGA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
50 49 0.96
51 2 0.04
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (50 bp):
AATGTATCAATACATTCAAGAATATATCGATACATCTAGGTAAAACCCAA
Found at i:173138 original size:50 final size:50
Alignment explanation
Indices: 173043--173141 Score: 144
Period size: 50 Copynumber: 2.0 Consensus size: 50
173033 TTCAGAAATG
*
173043 TATCGATACATCTAGGTAAAACCCAAAATGTATCAATACATTGAAGAATA
1 TATCGATACATCTAGGTAAAACCCAAAATGTATCAATACAATGAAGAATA
* * * * *
173093 TATCGATACATCTGGGTTAAACCCAGAATGTATCGATATAATGAAGAAT
1 TATCGATACATCTAGGTAAAACCCAAAATGTATCAATACAATGAAGAAT
173142 GTATTATGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (50 bp):
TATCGATACATCTAGGTAAAACCCAAAATGTATCAATACAATGAAGAATA
Found at i:173982 original size:18 final size:19
Alignment explanation
Indices: 173961--174009 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
173951 TGGAAAAGTC
*
173961 AAAAAGAAAAACACCA-AA
1 AAAAAGAAAAACAACACAA
*
173979 AAAAACAAAAA-AACACAA
1 AAAAAGAAAAACAACACAA
*
173997 AAAATGAAAAACA
1 AAAAAGAAAAACA
174010 GAAAAAGGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 21 0.84
19 1 0.04
ACGTcount: A:0.80, C:0.14, G:0.04, T:0.02
Consensus pattern (19 bp):
AAAAAGAAAAACAACACAA
Found at i:174006 original size:24 final size:24
Alignment explanation
Indices: 173979--174024 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
173969 AAACACCAAA
173979 AAAAACAAAAAAACACAAAAAATG
1 AAAAACAAAAAAACACAAAAAATG
* **
174003 AAAAACAGAAAAAGGCAAAAAA
1 AAAAACAAAAAAACACAAAAAA
174025 ATACAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.78, C:0.11, G:0.09, T:0.02
Consensus pattern (24 bp):
AAAAACAAAAAAACACAAAAAATG
Found at i:175279 original size:27 final size:27
Alignment explanation
Indices: 175199--175492 Score: 151
Period size: 27 Copynumber: 10.2 Consensus size: 27
175189 ACCCTTTTTT
175199 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
175226 CCTTTTCAAAG-CCTACAACACCGTGGCAC
1 CCTTTT--AAGTCC-ACAACTCCGTGGCAC
** *
175255 CCTTTTAAGTCCACAACTCTATGGCATATTTTT
1 CCTTTTAAGTCCACAACTCCGTGGC--A----C
* ** * *
175288 CTTTTTAAACCCACAACTTCGTGTCATC
1 CCTTTTAAGTCCACAACTCCGTGGCA-C
* * * *
175316 TTTTTCCTTTTAAGTCCACAACTTCATGACCC
1 -----CCTTTTAAGTCCACAACTCCGTGGCAC
*
175348 CCTTTTAAGTCCACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
175375 CC-TTTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
175401 CTTTTTCCTTTAAGTCTATAACTCCATGGCAC
1 C-----CTTTTAAGTCCACAACTCCGTGGCAC
* * *
175433 CCTTTTAAGCCCACAACTCTGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * **
175460 CCTTTAAAGCCCACAACTCTATGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
175487 CTTTTT
1 CCTTTT
175493 TTTTAAGTCC
Statistics
Matches: 204, Mismatches: 42, Indels: 42
0.71 0.15 0.15
Matches are distributed among these distances:
26 23 0.11
27 90 0.44
28 5 0.02
29 24 0.12
31 2 0.01
32 22 0.11
33 38 0.19
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.32
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:175424 original size:32 final size:32
Alignment explanation
Indices: 175374--175438 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
175364 CTCCGTGGCA
* *
175374 TCCTTTAAGCCCACAACTCCGTGGCACCTTTT
1 TCCTTTAAGCCCACAACTCCATGGCACCCTTT
* * *
175406 TCCTTTAAGTCTATAACTCCATGGCACCCTTT
1 TCCTTTAAGCCCACAACTCCATGGCACCCTTT
175438 T
1 T
175439 AAGCCCACAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.20, C:0.34, G:0.11, T:0.35
Consensus pattern (32 bp):
TCCTTTAAGCCCACAACTCCATGGCACCCTTT
Found at i:175449 original size:59 final size:59
Alignment explanation
Indices: 175351--175464 Score: 167
Period size: 58 Copynumber: 1.9 Consensus size: 59
175341 ATGACCCCCT
* *
175351 TTTAAGTCCACAACTCCGTGGCATCCTTTAAGCCCACAACTCCGTGGCA-CCTTTTTCC
1 TTTAAGTCCACAACTCCATGGCACCCTTTAAGCCCACAACTCCGTGGCATCCTTTTTCC
* * *
175409 TTTAAGTCTATAACTCCATGGCACCCTTTTAAGCCCACAACTCTGTGGCATCCTTT
1 TTTAAGTCCACAACTCCATGGCACCC-TTTAAGCCCACAACTCCGTGGCATCCTTT
175465 AAAGCCCACA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
58 22 0.45
59 22 0.45
60 5 0.10
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.32
Consensus pattern (59 bp):
TTTAAGTCCACAACTCCATGGCACCCTTTAAGCCCACAACTCCGTGGCATCCTTTTTCC
Found at i:175449 original size:85 final size:85
Alignment explanation
Indices: 175291--175517 Score: 294
Period size: 85 Copynumber: 2.7 Consensus size: 85
175281 TATTTTTCTT
* * * * * * * *
175291 TTTAAACCCACAACTTCGTGTCATCTTTTTCCTTTTAAGTCCACAACTTCATGACCCCCTTTTAA
1 TTTAAGCCCACAACTCCGTGGCACCTTTTTCC-TTTAAGTCCATAACTCCATGGCACCCTTTTAA
*
175356 GTCCACAACTCCGTGGCATCC
65 GCCCACAACTCCGTGGCATCC
*
175377 TTTAAGCCCACAACTCCGTGGCACCTTTTTCCTTTAAGTCTATAACTCCATGGCACCCTTTTAAG
1 TTTAAGCCCACAACTCCGTGGCACCTTTTTCCTTTAAGTCCATAACTCCATGGCACCCTTTTAAG
*
175442 CCCACAACTCTGTGGCATCC
66 CCCACAACTCCGTGGCATCC
** * *
175462 TTTAAAGCCCACAACTCTATGGCACCTTTTT-TTTTAAGTCCATAACTCTATGGCAC
1 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCCTTTAAGTCCATAACTCCATGGCAC
175518 TTTGTCATTT
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
85 71 0.57
86 53 0.43
ACGTcount: A:0.24, C:0.32, G:0.11, T:0.33
Consensus pattern (85 bp):
TTTAAGCCCACAACTCCGTGGCACCTTTTTCCTTTAAGTCCATAACTCCATGGCACCCTTTTAAG
CCCACAACTCCGTGGCATCC
Found at i:175542 original size:33 final size:31
Alignment explanation
Indices: 175462--175560 Score: 101
Period size: 31 Copynumber: 3.1 Consensus size: 31
175452 TGTGGCATCC
175462 TTTAAAGCCCACAACTCTATGGCACCTTTTTT
1 TTTAAA-CCCACAACTCTATGGCACCTTTTTT
** *
175494 TTTAAGTCCATAACTCTATGGCA-CTTTGTCATT
1 TTTAAACCCACAACTCTATGGCACCTTT-T--TT
** *
175527 TTTAAACCCACAACTCCGTAGCACCTTTTTT
1 TTTAAACCCACAACTCTATGGCACCTTTTTT
175558 TTT
1 TTT
175561 CCTTTTAAGT
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
30 4 0.07
31 21 0.39
32 5 0.09
33 20 0.37
34 4 0.07
ACGTcount: A:0.24, C:0.26, G:0.09, T:0.40
Consensus pattern (31 bp):
TTTAAACCCACAACTCTATGGCACCTTTTTT
Found at i:175751 original size:103 final size:99
Alignment explanation
Indices: 175630--175997 Score: 358
Period size: 103 Copynumber: 3.7 Consensus size: 99
175620 TTAGCCCACT
*
175630 ACTCCATGGCATCCTTTTTTGCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCC
1 ACTCCGTGGCA-CCTTTTTT-CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCC
* *
175695 CACAACTCGGTGGCATCTTTTTTCGTTTTAAGTCCATA
64 CACAACTCCGTGGCA-C-TTTTTCCTTTTAAGTCCATA
* * * * *
175733 ACTCCGTGGCACCCTTTTTTCCTTTTGAGTCCACAATTACGTGGCACATTTTTCTTTTTAAAGCC
1 ACTCCGTGGCA-CCTTTTTT-CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCC
* *
175798 TACAACTCCGTGACACCATTTTTCCTTTTAAGTCCATA
64 CACAACTCCGTGGCA-C-TTTTTCCTTTTAAGTCCATA
* * ** * * * * *
175836 ACTCTGTGGCACCTTTTTAT-TTTCAAAACCCACAACTTCATGGCACC-TTTTCTTCTAAAAGTC
1 ACTCCGTGGCACCTTTTT-TCTTT-TAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCC
*
175899 CACAACTCCGTGGCAC-----CCTTTTAAGTCCGTA
64 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCATA
* *
175930 ACTCCGTAGCACC-TTTTTCTTTTCAAAG-CCTATAACTCCGTGGCACCTTTTTCTTTTCAAAGC
1 ACTCCGTGGCACCTTTTTTCTTTT--AAGTCC-ACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
175993 CCACA
63 CCACA
175998 GAAGCTGGTG
Statistics
Matches: 219, Mismatches: 39, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
92 1 0.00
93 9 0.04
94 40 0.18
95 17 0.08
100 1 0.00
101 29 0.13
102 22 0.10
103 100 0.46
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.37
Consensus pattern (99 bp):
ACTCCGTGGCACCTTTTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCA
CAACTCCGTGGCACTTTTTCCTTTTAAGTCCATA
Found at i:175987 original size:34 final size:33
Alignment explanation
Indices: 175384--175997 Score: 281
Period size: 34 Copynumber: 19.2 Consensus size: 33
175374 TCCTTTAAGC
*
175384 CCACAACTCCGTGGCACCTTTTTCCTTT-AAGT
1 CCACAACTCCGTGGCACCTTTTTCTTTTAAAGT
* * * *
175416 CTATAACTCCATGGCACC-----CTTTT-AAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTTAAAGT
* * *
175443 CCACAACTCTGTGGCA------TCCTTTAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTTAAAGT
**
175470 CCACAACTCTATGGCACCTTTTT-TTTT-AAGT
1 CCACAACTCCGTGGCACCTTTTTCTTTTAAAGT
* ** * *
175501 CCATAACTCTATGGCA-CTTTGTCATTTTTAAA-C
1 CCACAACTCCGTGGCACCTTTTTC--TTTTAAAGT
*
175534 CCACAACTCCGTAGCACCTTTTTTTTTCCTTTT-AAGT
1 CCACAACTCCGTGGCACC----TTTTT-CTTTTAAAGT
* * *
175571 CCATAACTCTGTGGCGCC----T-TTTT-AAGT
1 CCACAACTCCGTGGCACCTTTTTCTTTTAAAGT
* *
175598 CCACAACTCCGTGGTACC-----CATTTT--AGC
1 CCACAACTCCGTGGCACCTTTTTC-TTTTAAAGT
* *
175625 CCACTACTCCATGGCATCCTTTTTTGCTTTT-AAGT
1 CCACAACTCCGTGGCA-CC-TTTTT-CTTTTAAAGT
*
175660 CCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTTTTCTTTT-AAAGT
* *
175694 CCACAACTCGGTGGCATCTTTTTTCGTTTT-AAGT
1 CCACAACTCCGTGGCA-CCTTTTTC-TTTTAAAGT
* *
175728 CCATAACTCCGTGGCACCCTTTTTTCCTTTT-GAGT
1 CCACAACTCCGTGGCA-CC-TTTTT-CTTTTAAAGT
* * *
175763 CCACAATTACGTGGCACATTTTTCTTTTTAAAG-
1 CCACAACTCCGTGGCACCTTTTTC-TTTTAAAGT
*
175796 CCTACAACTCCGTGACACCATTTTTCCTTTT-AAGT
1 CC-ACAACTCCGTGGCACC-TTTTT-CTTTTAAAGT
* * * **
175831 CCATAACTCTGTGGCACCTTTTTATTTTCAAAAC
1 CCACAACTCCGTGGCACCTTTTTCTTTT-AAAGT
* * *
175865 CCACAACTTCATGGCACC-TTTTCTTCTAAAAGT
1 CCACAACTCCGTGGCACCTTTTTCTT-TTAAAGT
175898 CCACAACTCCGTGGCACC-----CTTTT-AAGT
1 CCACAACTCCGTGGCACCTTTTTCTTTTAAAGT
** *
175925 CCGTAACTCCGTAGCACCTTTTTCTTTTCAAAG-
1 CCACAACTCCGTGGCACCTTTTTCTTTT-AAAGT
* *
175958 CCTATAACTCCGTGGCACCTTTTTCTTTTCAAAGC
1 CC-ACAACTCCGTGGCACCTTTTTCTTTT-AAAGT
175993 CCACA
1 CCACA
175998 GAAGCTGGTG
Statistics
Matches: 450, Mismatches: 78, Indels: 106
0.71 0.12 0.17
Matches are distributed among these distances:
26 4 0.01
27 94 0.21
28 7 0.02
29 4 0.01
30 5 0.01
31 18 0.04
32 33 0.07
33 65 0.14
34 127 0.28
35 62 0.14
36 8 0.02
37 18 0.04
38 4 0.01
39 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.36
Consensus pattern (33 bp):
CCACAACTCCGTGGCACCTTTTTCTTTTAAAGT
Done.