Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold162
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1959167
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.30
Warning! 205334 characters in sequence are not A, C, G, or T
File 12 of 12
Found at i:1831957 original size:2 final size:2
Alignment explanation
Indices: 1831950--1831978 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1831940 TTAACGTAAA
1831950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1831979 CATGAGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1837792 original size:20 final size:20
Alignment explanation
Indices: 1837767--1837822 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
1837757 CTGCCAAGGA
1837767 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
1837787 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
1837807 AATGTATCGATACATT
1 AATGTATCGATACATT
1837823 GATCTTTATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:1841694 original size:127 final size:127
Alignment explanation
Indices: 1841562--1841824 Score: 314
Period size: 127 Copynumber: 2.1 Consensus size: 127
1841552 GTTTAAATTA
**
1841562 GAAAAAAAAAATAC-TTTAATGGCAATCCCAAAGCTTAACTAATTTGAAAAATAAGTTCAATTTT
1 GAAAAAAAAAATACGTCGAA-GGCAATCCCAAAGCTTAACTAATTTGAAAAATAAGTTCAATTTT
* * ** ** * *
1841626 GAAAACAAAAATA-TTCGTTGTTAATCTTGAAGCTTGACTTATTCAAAAAATGAGTTTGATTTT
65 GAAAA-AAAAATACTTCGATGATAATCTCAAAGCTTGACCCATTCAAAAAATAAGTTCGATTTT
*** * * * * **
1841689 GAAAAAAAAAATACGTCGAAGGCAATGTTAAAGCTTGACTTATTTGAAAATTGAGTTTGATTTTG
1 GAAAAAAAAAATACGTCGAAGGCAATCCCAAAGCTTAACTAATTTGAAAAATAAGTTCAATTTTG
*
1841754 AAAAAAAAATACTTCGATGATAATCTCAAAGTTTGACCCATTCAAAAAATAAGTTCGATTTT
66 AAAAAAAAATACTTCGATGATAATCTCAAAGCTTGACCCATTCAAAAAATAAGTTCGATTTT
1841816 GAAAAAAAA
1 GAAAAAAAA
1841825 TACTTCAAAA
Statistics
Matches: 114, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
126 7 0.06
127 104 0.91
128 3 0.03
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (127 bp):
GAAAAAAAAAATACGTCGAAGGCAATCCCAAAGCTTAACTAATTTGAAAAATAAGTTCAATTTTG
AAAAAAAAATACTTCGATGATAATCTCAAAGCTTGACCCATTCAAAAAATAAGTTCGATTTT
Found at i:1841803 original size:64 final size:63
Alignment explanation
Indices: 1841621--1842010 Score: 251
Period size: 63 Copynumber: 6.2 Consensus size: 63
1841611 AATAAGTTCA
* * *
1841621 ATTTTGAAAACAAAAATA-TTCGTTGTTAATCTTGAAGCTTGACTTATTCAAAAAATGAGTTTG
1 ATTTTGAAAA-AAAAATACTTCGATGATAATCTTAAAGCTTGACTTATTCAAAAAATGAGTTTG
* * ** * ** *
1841684 ATTTTGAAAAAAAAAATACGTCGAAGGCAATGTTAAAGCTTGACTTATTTGAAAATTGAGTTTG
1 ATTTTG-AAAAAAAAATACTTCGATGATAATCTTAAAGCTTGACTTATTCAAAAAATGAGTTTG
* * ** * *
1841748 ATTTTGAAAAAAAAATACTTCGATGATAATCTCAAAGTTTGACCCATTCAAAAAATAAGTTCG
1 ATTTTGAAAAAAAAATACTTCGATGATAATCTTAAAGCTTGACTTATTCAAAAAATGAGTTTG
** * * * * * * * *
1841811 ATTTTG-AAAAAAAATACTTC-AAAAGTGATCCTGAAGTTTAACCTGTTCCAAAAACA-AAGTTT
1 ATTTTGAAAAAAAAATACTTCGATGA-TAATCTTAAAGCTTGACTTATT-CAAAAA-ATGAG-TT
1841873 TG
62 TG
* * * * ** * *
1841875 ATTTTGAAAATAAAACACTTTGATTG-CAATCCCAAAGCTCGACTTATTCAAAAAATGAGTTCG
1 ATTTTGAAAAAAAAATACTTCGA-TGATAATCTTAAAGCTTGACTTATTCAAAAAATGAGTTTG
* * * * **
1841938 ATTTTG-AAAGAAAATACTTC-ACT-AGTAATCTCGACA-CTCGAC-TATTTGAAAAATGAGTTT
1 ATTTTGAAAAAAAAATACTTCGA-TGA-TAATCT-TAAAGCTTGACTTATTCAAAAAATGAGTTT
1841998 G
63 G
1841999 ATTTTGAAAAAA
1 ATTTTGAAAAAA
1842011 TATTTTAATG
Statistics
Matches: 251, Mismatches: 62, Indels: 29
0.73 0.18 0.08
Matches are distributed among these distances:
61 26 0.10
62 54 0.22
63 83 0.33
64 63 0.25
65 24 0.10
66 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.33
Consensus pattern (63 bp):
ATTTTGAAAAAAAAATACTTCGATGATAATCTTAAAGCTTGACTTATTCAAAAAATGAGTTTG
Found at i:1842545 original size:24 final size:24
Alignment explanation
Indices: 1842518--1842590 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
1842508 TAAGCATTTA
* * *
1842518 AAATGTCTTTAAGAGAGGTTTTTG
1 AAATGTCCTCAAGAGAGGCTTTTG
* * *
1842542 AAATATCCTCAAGAAAGACTTTTG
1 AAATGTCCTCAAGAGAGGCTTTTG
*
1842566 AAATGTCCTCAAAAGAGGCTTTTG
1 AAATGTCCTCAAGAGAGGCTTTTG
1842590 A
1 A
1842591 GATATCCCTA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (24 bp):
AAATGTCCTCAAGAGAGGCTTTTG
Found at i:1842934 original size:24 final size:24
Alignment explanation
Indices: 1842889--1842934 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
1842879 TCTTTGTTGA
*
1842889 AATGTCTTCAAGAGAAGTTTTTGG
1 AATGTCTTCAAGAGAAGCTTTTGG
*
1842913 AATGTCCTT-AAGAGAGGCTTTT
1 AATGT-CTTCAAGAGAAGCTTTT
1842935 AATGTGATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (24 bp):
AATGTCTTCAAGAGAAGCTTTTGG
Found at i:1846006 original size:27 final size:27
Alignment explanation
Indices: 1845972--1846047 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
1845962 TTCTCTTTTT
1845972 TTTCTTTTTTCTT-ATTTTCTTCTTCC
1 TTTCTTTTTTCTTCATTTTCTTCTTCC
* *
1845998 TTTCTTTTTTCTTCTTTTTCTTTTTCC
1 TTTCTTTTTTCTTCATTTTCTTCTTCC
1846025 TTTCCTTTTTT-TTC-TTCTTCTTC
1 TTT-CTTTTTTCTTCATT-TTCTTC
1846048 ACCCTAAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
26 15 0.34
27 22 0.50
28 7 0.16
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (27 bp):
TTTCTTTTTTCTTCATTTTCTTCTTCC
Found at i:1846023 original size:33 final size:34
Alignment explanation
Indices: 1845965--1846046 Score: 98
Period size: 33 Copynumber: 2.4 Consensus size: 34
1845955 AATTTCGTTC
*
1845965 TCTTTTTT-TTCTTTTTTCTTATTTTCTTCTTCCTT
1 TCTTTTTTCTTC-TTTTTCTTATTTTCCT-TTCCTT
1846000 TCTTTTTTCTTCTTTTTC-T-TTTTCCTTTCCTT
1 TCTTTTTTCTTCTTTTTCTTATTTTCCTTTCCTT
*
1846032 TTTTTTCTTCTTCTT
1 TCTTTT-TTCTTCTT
1846047 CACCCTAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
32 11 0.26
33 14 0.33
34 1 0.02
35 14 0.33
36 3 0.07
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (34 bp):
TCTTTTTTCTTCTTTTTCTTATTTTCCTTTCCTT
Found at i:1846037 original size:16 final size:14
Alignment explanation
Indices: 1845986--1846041 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 14
1845976 TTTTTTCTTA
*
1845986 TTTTCTTCTTCCTT
1 TTTTTTTCTTCCTT
*
1846000 TCTTTTTTCTTCTTT
1 T-TTTTTTCTTCCTT
1846015 TTCTTTTTCCTTTCC-T
1 TT-TTTTT-C-TTCCTT
1846031 TTTTTTTCTTC
1 TTTTTTTCTTC
1846042 TTCTTCACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
13 3 0.09
14 3 0.09
15 22 0.63
16 4 0.11
17 3 0.09
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTTTTCTTCCTT
Found at i:1847248 original size:73 final size:72
Alignment explanation
Indices: 1847171--1847472 Score: 181
Period size: 74 Copynumber: 4.1 Consensus size: 72
1847161 TGACGCCTTG
* * *
1847171 AAAAAGAAAGGGGTGCCACTAATATGTGTGGACTTAAAGAAGG-AAGAGTGTGCTACCAAC-T-T
1 AAAAAGAAAGGGGTGCCACTAATATGTG-GG-CTTAAAGAAGGAAAAAATGTGCCACCAACTTGT
* *
1847233 ATGCGAGCTTT
64 AT-AG-GCATT
* * * *
1847244 AAAAAGAAAAGGATGCCACCAACTTATGTGGGCTTAAAGAGGGAAAAAATGTGCCACCAACTTGT
1 AAAAAGAAAGGGGTGCCACTAA--TATGTGGGCTTAAAGAAGGAAAAAATGTGCCACCAACTTGT
1847309 ATAGGCATT
64 ATAGGCATT
* * * * * *
1847318 AAAAGGAAAGGGGTGCCACTAATTTATGTAGGCCTAAA-AAGGGAAAAAA-GTGCTACTAGCTTG
1 AAAAAGAAAGGGGTGCCACTAA--TATGTGGGCTTAAAGAA-GGAAAAAATGTGCCACCAACTTG
* * *
1847381 TGTAAGCCTT
63 TATAGGCATT
* * * * *
1847391 -AAAAGAAATGAGTGCCACCAACT-TGTGTTGGCTTAAA-AAGG-AAAAATGGTGCCGCTAACTT
1 AAAAAGAAAGGGGTGCCACTAA-TATGTG--GGCTTAAAGAAGGAAAAAAT-GTGCCACCAACTT
** *
1847452 GTGCAGGCTTT
62 GTATAGGCATT
1847463 AAAAAAGAAA
1 -AAAAAGAAA
1847473 AAAAAGAGGT
Statistics
Matches: 181, Mismatches: 36, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
70 8 0.04
71 3 0.02
72 44 0.24
73 48 0.27
74 67 0.37
75 8 0.04
76 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (72 bp):
AAAAAGAAAGGGGTGCCACTAATATGTGGGCTTAAAGAAGGAAAAAATGTGCCACCAACTTGTAT
AGGCATT
Found at i:1847335 original size:74 final size:72
Alignment explanation
Indices: 1847245--1847516 Score: 206
Period size: 72 Copynumber: 3.6 Consensus size: 72
1847235 GCGAGCTTTA
* * *
1847245 AAAAGAAAAGGATGCCACCAACTTATGTGGGCTTAAAGAGGGAAAAAATGTGCCACCAACTTGTA
1 AAAAGAAAAGGGTGCCACCAACTTATGTAGGCTTAAA-AGGGAAAAAATGTGCCACTAACTTGTA
*
1847310 TAGGCATT
65 TAAGCATT
* * * * * *
1847318 AAAAGGAAAGGGGTGCCACTAATTTATGTAGGCCTAAAAAGGGAAAAAA-GTGCTACTAGCTTGT
1 AAAA-GAAAAGGGTGCCACCAACTTATGTAGG-CTTAAAAGGGAAAAAATGTGCCACTAACTTGT
* *
1847382 GTAAGCCTT
64 ATAAGCATT
* * * * * * *
1847391 AAAAGAAATGAGTGCCACCAACTTGTGTTGGCTTAAAAAGG-AAAAATGGTGCCGCTAACTTGTG
1 AAAAGAAAAGGGTGCCACCAACTTATGTAGGCTTAAAAGGGAAAAAAT-GTGCCACTAACTTGTA
* * *
1847455 CAGGCTTT
65 TAAGCATT
* *
1847463 AAAAAAGAAAAAAAAGAGGTGCCATCAACTTGTGTAGGCTTAAAAAGGGAAAAA
1 --AAAAG----AAAAG-GGTGCCACCAACTTATGTAGGCTT-AAAAGGGAAAAA
1847517 GGTGATGAAT
Statistics
Matches: 155, Mismatches: 31, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
70 5 0.03
71 8 0.05
72 39 0.25
73 26 0.17
74 37 0.24
75 5 0.03
78 4 0.03
79 21 0.14
80 6 0.04
81 4 0.03
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (72 bp):
AAAAGAAAAGGGTGCCACCAACTTATGTAGGCTTAAAAGGGAAAAAATGTGCCACTAACTTGTAT
AAGCATT
Found at i:1847416 original size:35 final size:36
Alignment explanation
Indices: 1847242--1847507 Score: 139
Period size: 37 Copynumber: 7.2 Consensus size: 36
1847232 TATGCGAGCT
* * *
1847242 TTAAAAAGAAAAG-GATGCCACCAACTTATGT-GGGC
1 TTAAAAGGAAAAGAG-TGCCACCAACTTGTGTAGGCC
* * *
1847277 TTAAAGAGGGAAAAAATGTGCCACCAACTTGTATAGGCA
1 TTAAA-A-GGAAAAGA-GTGCCACCAACTTGTGTAGGCC
* * * * *
1847316 TTAAAAGGAAAGGGGTGCCACTAATTTATGTAGGCC
1 TTAAAAGGAAAAGAGTGCCACCAACTTGTGTAGGCC
* * * * * *
1847352 TAAAAAGGGAAAAAAGTGCTACTAGCTTGTGTAAGCC
1 TTAAAA-GGAAAAGAGTGCCACCAACTTGTGTAGGCC
* *
1847389 TTAAAA-GAAATGAGTGCCACCAACTTGTGTTGG-C
1 TTAAAAGGAAAAGAGTGCCACCAACTTGTGTAGGCC
* * * *
1847423 TTAAAAAGGAAAA-ATGGTGCCGCTAACTTGTGCAGGCT
1 TT-AAAAGGAAAAGA--GTGCCACCAACTTGTGTAGGCC
* *
1847461 TTAAAAAAGAAAAAAAAGAGGTGCCATCAACTTGTGTAGG-C
1 TT--AAAAG---GAAAAGA-GTGCCACCAACTTGTGTAGGCC
1847502 TTAAAA
1 TTAAAA
1847508 AGGGAAAAAG
Statistics
Matches: 172, Mismatches: 43, Indels: 28
0.71 0.18 0.12
Matches are distributed among these distances:
34 3 0.02
35 30 0.17
36 27 0.16
37 53 0.31
38 17 0.10
39 18 0.10
41 2 0.01
42 21 0.12
43 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (36 bp):
TTAAAAGGAAAAGAGTGCCACCAACTTGTGTAGGCC
Found at i:1847453 original size:72 final size:72
Alignment explanation
Indices: 1847245--1847454 Score: 208
Period size: 72 Copynumber: 2.9 Consensus size: 72
1847235 GCGAGCTTTA
* * * *
1847245 AAAAGAAAAGGA-TGCCACCAACTTATGTGGGCTTAAAGAGGGAAAAAATGTGCCACCAACTTGT
1 AAAAGGAAAGGAGTGCCACCAACTTATGTAGGCTTAAA-AAGG-AAAAATGTGCCACTAACTTGT
* *
1847309 ATAGGCATT
64 GTAAGCATT
* * * * * * *
1847318 AAAAGGAAAGGGGTGCCACTAATTTATGTAGGCCTAAAAAGGGAAAAAAGTGCTACTAGCTTGTG
1 AAAAGGAAAGGAGTGCCACCAACTTATGTAGGCTTAAAAA-GGAAAAATGTGCCACTAACTTGTG
*
1847383 TAAGCCTT
65 TAAGCATT
* * * *
1847391 AAAA-GAAATGAGTGCCACCAACTTGTGTTGGCTTAAAAAGGAAAAATGGTGCCGCTAACTTGTG
1 AAAAGGAAAGGAGTGCCACCAACTTATGTAGGCTTAAAAAGGAAAAAT-GTGCCACTAACTTGTG
1847455 CAGGCTTTAA
Statistics
Matches: 109, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
71 7 0.06
72 41 0.38
73 38 0.35
74 23 0.21
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (72 bp):
AAAAGGAAAGGAGTGCCACCAACTTATGTAGGCTTAAAAAGGAAAAATGTGCCACTAACTTGTGT
AAGCATT
Found at i:1847469 original size:147 final size:146
Alignment explanation
Indices: 1847117--1847472 Score: 330
Period size: 147 Copynumber: 2.4 Consensus size: 146
1847107 AGGGTGTCAT
* * * ** * * *
1847117 CAACTTGTGTGGGCTTAAAGAGAAAAAAAGGTGTTGCTAGCTTGTGACGCCTTGAAAAA-GAAAG
1 CAACTTGTGTGGGCTTAAAAAGGAAAAATGGTGCCGCTAACTTGTGAGGCATT-AAAAAGGAAAG
* * * ** * *
1847181 GGGTGCCACTAATATGTGTGGACTTAAAGAAGGAAGAGTGTGCTACCAACTTATGCGAGCTTTAA
65 GGGTGCCACTAATATATGTGGACCTAAAGAAGGAAAAAAGTGCTACCAACTTATGCAAGCCTTAA
1847246 AAAGAAAAGGATGCCAC
130 AAAGAAAAGGATGCCAC
* * * * *
1847263 CAACTTATGTGGGCTTAAAGAGGGAAAAAAT-GTGCCACCAACTTGTATAGGCATT-AAAAGGAA
1 CAACTTGTGTGGGCTTAAA-AAGG-AAAAATGGTGCCGCTAACTTGT-GAGGCATTAAAAAGGAA
* * * * *
1847326 AGGGGTGCCACTAATTTATGTAGG-CCTAAA-AAGGGAAAAAAGTGCTACTAGCTTGTGTAAGCC
63 AGGGGTGCCACTAATATATGT-GGACCTAAAGAA-GGAAAAAAGTGCTACCAACTTATGCAAGCC
*
1847389 TT-AAAAG-AAATGAGTGCCAC
126 TTAAAAAGAAAAGGA-TGCCAC
* * *
1847409 CAACTTGTGTTGGCTTAAAAAGGAAAAATGGTGCCGCTAACTTGTGCAGGCTTTAAAAAAGAAA
1 CAACTTGTGTGGGCTTAAAAAGGAAAAATGGTGCCGCTAACTTGTG-AGGCATTAAAAAGGAAA
1847473 AAAAAGAGGT
Statistics
Matches: 166, Mismatches: 34, Indels: 20
0.75 0.15 0.09
Matches are distributed among these distances:
144 6 0.04
145 27 0.16
146 60 0.36
147 61 0.37
148 12 0.07
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.23
Consensus pattern (146 bp):
CAACTTGTGTGGGCTTAAAAAGGAAAAATGGTGCCGCTAACTTGTGAGGCATTAAAAAGGAAAGG
GGTGCCACTAATATATGTGGACCTAAAGAAGGAAAAAAGTGCTACCAACTTATGCAAGCCTTAAA
AAGAAAAGGATGCCAC
Found at i:1850371 original size:155 final size:155
Alignment explanation
Indices: 1850072--1850934 Score: 856
Period size: 155 Copynumber: 5.5 Consensus size: 155
1850062 TAAAGGGCTA
* * * * * *
1850072 AGTTCAAGAAAAATTATAAAAATACCCCTAGAGGATACTTTCGACGTGAAAGTACCCCGGTACCC
1 AGTTCTAG-AAAATTATGAAAATACCCCTAGGGGATACCTTCGACGTGAAAGTATCCCGATACCC
* * * * *
1850137 TTAAAGGATTTAAAAAAGACTATAAAAGGG-TGAATCTATCCTAAATACCCACCTTCGACATAAA
65 CTAAAGGACTT-AAAAAGACTATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAA
* * * *
1850201 AGCAGACCCGATGACAGCCTAGGAATT
129 AGCGGACCCGGTGACAACCTAGGACTT
* *
1850228 AGTTCTAGAAAATTATGAAAATGCCCCTAGGGGATACCTTCAACGTGAAAGTATCCCGATACCCC
1 AGTTCTAGAAAATTATGAAAATACCCCTAGGGGATACCTTCGACGTGAAAGTATCCCGATACCCC
*
1850293 TAAAAGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCT-AATGCCCACCTTCGGCATAAAA
66 TAAAGGACTTAAAAAGACT-ATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAA
* *
1850357 GCGGACTCGGTGACAACCTAGGAGTT
130 GCGGACCCGGTGACAACCTAGGACTT
* * * * *
1850383 GGTTTTAGAAAATTATGAAAATACCCCTAGGGG-CACCTTCGACGTGAAAGTATCTCGGTACCCC
1 AGTTCTAGAAAATTATGAAAATACCCCTAGGGGATACCTTCGACGTGAAAGTATCCCGATACCCC
* * * * * *
1850447 TAAAGAACTTAAAAAGACTCATAAAAGCGACGAACTTATCTTAAATGCTCACCTTCGGCATAAAA
66 TAAAGGACTTAAAAAGACT-ATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAA
* * * * *
1850512 GTGAACCCAGTGACGACCTAGGAGTT
130 GCGGACCCGGTGACAACCTAGGACTT
* * * * * * *
1850538 -GATTCTAGAAAATTATGAAAATGCCCCTAAGGGTTATACCTTTGATGTAAAAATATGCC-AGTA
1 AG-TTCTAGAAAATTATGAAAATACCCCT-AGGG-GATACCTTCGACGTGAAAGTATCCCGA-TA
* * * *
1850601 ACCCTAAAGGACTTAAAAAGACTAGAAATGGTGATGAACCTATCCTAAATGCCCACCTTTGGCAT
62 CCCCTAAAGGACTTAAAAAGACTATAAAAGG-GATGAACCTATCCTAAATGCCCACCTTCGGCAT
* * * *
1850666 AAAAGCGAACCTGGTGATAACCTAGGACTA
126 AAAAGCGGACCCGGTGACAACCTAGGACTT
*** * * * * *
1850696 AGTTCTAGGAAAAATTATGAAAATACATTTAGAGGATACCTTTGATGTGAAAATATCCCAATACC
1 AGTTCTA-G-AAAATTATGAAAATACCCCTAGGGGATACCTTCGACGTGAAAGTATCCCGATACC
* * * ** * *
1850761 CCTAAAGGACTTAAAAAGGCTAGAAATGGGGGGGAACCTATCCTAAATGCCCACCCTCGGCATCA
64 CCTAAAGGACTTAAAAAGACTATAAA-AGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAA
* * *
1850826 AAGCGGACTCGATGACAACCTAGGACTC
128 AAGCGGACCCGGTGACAACCTAGGACTT
* * ** * * * * * *
1850854 GGTTCTAAAAAAATTATGAAAATGTCCTTAGGAGACACCTTCGACGTGAAACTATCTCGGTA-CC
1 AGTTCT-AGAAAATTATGAAAATACCCCTAGGGGATACCTTCGACGTGAAAGTATCCCGATACCC
1850918 CTAAAGGACTTAAAAAG
65 CTAAAGGACTTAAAAAG
1850935 GGCTAGAAAA
Statistics
Matches: 589, Mismatches: 103, Indels: 30
0.82 0.14 0.04
Matches are distributed among these distances:
154 73 0.12
155 203 0.34
156 41 0.07
157 45 0.08
158 202 0.34
159 9 0.02
160 16 0.03
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (155 bp):
AGTTCTAGAAAATTATGAAAATACCCCTAGGGGATACCTTCGACGTGAAAGTATCCCGATACCCC
TAAAGGACTTAAAAAGACTATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAG
CGGACCCGGTGACAACCTAGGACTT
Found at i:1850946 original size:158 final size:153
Alignment explanation
Indices: 1850081--1850944 Score: 825
Period size: 158 Copynumber: 5.5 Consensus size: 153
1850071 AAGTTCAAGA
* * * * * * *
1850081 AAAATTATAAAAATACCCCTAGAGGATACTTTCGACGTGAAAGTACCCCGGTACCCTTAAAGGAT
1 AAAATTATGAAAATGCCCTTAG-GGATACCTTCGACGTGAAAGTATCCCGGTACCCCTAAAGGAC
* * * * *
1850146 TTAAAAAAGACTATAAAAGGG-TGAATCTATCCTAAATACCCACCTTCGACATAAAAGCAGACCC
65 TT-AAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGA-CC
* * *
1850210 GATGACAGCCTAGGAATTAGTTCTAG
128 GATGACAACCTAGGACTTGGTTCTAG
* * * *
1850236 AAAATTATGAAAATGCCCCTAGGGGATACCTTCAACGTGAAAGTATCCCGATACCCCTAAAAGAC
1 AAAATTATGAAAATGCCCTTA-GGGATACCTTCGACGTGAAAGTATCCCGGTACCCCTAAAGGAC
*
1850301 TTAAAAAGACTCATAAAAGGGATGAACCTATCCT-AATGCCCACCTTCGGCATAAAAGCGGACTC
65 TTAAAAAGACT-AGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGAC-C
* * *
1850365 GGTGACAACCTAGGAGTTGGTTTTAG
128 GATGACAACCTAGGACTTGGTTCTAG
* * ** * *
1850391 AAAATTATGAAAATACCCCTAGGGGCACCTTCGACGTGAAAGTATCTCGGTACCCCTAAAGAACT
1 AAAATTATGAAAATGCCCTTAGGGATACCTTCGACGTGAAAGTATCCCGGTACCCCTAAAGGACT
* * * * * * * * *
1850456 TAAAAAGACTCATAAAAGCGACGAACTTATCTTAAATGCTCACCTTCGGCATAAAAGTGAACCCA
66 TAAAAAGACT-AGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCGA
* * *
1850521 GTGACGACCTAGGAGTTGATTCTAG
130 -TGACAACCTAGGACTTGGTTCTAG
* * * * * * * *
1850546 AAAATTATGAAAATGCCCCTAAGGGTTATACCTTTGATGTAAAAATATGCCAGTAACCCTAAAGG
1 AAAATTATGAAAATG-CCCTTAGGG--ATACCTTCGACGTGAAAGTATCCCGGTACCCCTAAAGG
* * *
1850611 ACTTAAAAAGACTAGAAATGGTGATGAACCTATCCTAAATGCCCACCTTTGGCATAAAAGCGAAC
63 ACTTAAAAAGACTAGAAAAGG-GATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGAC
* * **
1850676 CTGGTGATAACCTAGGACTAAGTTCTAGG
127 C-GATGACAACCTAGGACTTGGTTCTA-G
* ** * * * **
1850705 AAAAATTATGAAAATACATTTAGAGGATACCTTTGATGTGAAAATATCCCAATACCCCTAAAGGA
1 -AAAATTATGAAAATGCCCTTAG-GGATACCTTCGACGTGAAAGTATCCCGGTACCCCTAAAGGA
* * ** * *
1850770 CTTAAAAAGGCTAGAAATGGGGGGGAACCTATCCTAAATGCCCACCCTCGGCATCAAAGCGGACT
64 CTTAAAAAGACTAGAAA-AGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGAC-
* *
1850835 CGATGACAACCTAGGACTCGGTTCTAAA
127 CGATGACAACCTAGGACTTGGTTCT-AG
* * * *
1850863 AAAATTATGAAAATGTCCTTAGGAGACACCTTCGACGTGAAACTATCTCGGTA-CCCTAAAGGAC
1 AAAATTATGAAAATGCCCTTAGG-GATACCTTCGACGTGAAAGTATCCCGGTACCCCTAAAGGAC
*
1850927 TTAAAAAGGGCTAGAAAA
65 TTAAAAA-GACTAGAAAA
1850945 TGAAGATTTT
Statistics
Matches: 588, Mismatches: 102, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
154 77 0.13
155 191 0.32
156 38 0.06
157 54 0.09
158 203 0.35
159 9 0.02
160 16 0.03
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (153 bp):
AAAATTATGAAAATGCCCTTAGGGATACCTTCGACGTGAAAGTATCCCGGTACCCCTAAAGGACT
TAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCGGACCGAT
GACAACCTAGGACTTGGTTCTAG
Found at i:1853240 original size:167 final size:167
Alignment explanation
Indices: 1853016--1853422 Score: 518
Period size: 167 Copynumber: 2.4 Consensus size: 167
1853006 AAAATAGGGA
* * *
1853016 TTTCAAAGAAAAAATTTAAAAACT-CATG-AAATGAATGAATTTTTAAAAACTGAATTAATAT-A
1 TTTCAAAGAAAAAA--TAAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGA
* * * * *
1853078 AATCGAATGATGATGTTTAATG-ATTTCTAAAAATTGCAAACTGAGAAAAATCCCCTCGAAAAAA
64 AAT-AAATAATGATGTTTAATGAATTT-TAAAAATTGAAAACTAAGAAAAAACCCCTCGAAAAAA
* ** * *
1853142 TTTACAGAGTAGAAAATACCGTA-TTTAGGAAAAAGGGAAG
127 TTTACAGAGTAGAAAATACCGTACTTCAAAAAAAAAGAAAG
* * *
1853182 TTTCAAGGAAAAAAATCAAAAATGAATGAAAATGAATGAATTTTTGAAAACAGAATTAATATGAA
1 TTTCAAAG-AAAAAATAAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAA
* * * *
1853247 ATAAATAATGATGTTTGATGAATTTTAGATATTTAAAACTAAGAAAAAACCCCTCGAAAAAATTT
65 ATAAATAATGATGTTTAATGAATTTTAAAAATTGAAAACTAAGAAAAAACCCCTCGAAAAAATTT
** *
1853312 ATGGAGTGGAAAATACCGTACTTCAAAAAAAAAGAAAG
130 ACAGAGTAGAAAATACCGTACTTCAAAAAAAAAGAAAG
*
1853350 TTTTAAAGAAAAAATAAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAA
1 TTTCAAAGAAAAAATAAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAA
1853415 TAAATAAT
66 TAAATAAT
1853423 AATATTTGAA
Statistics
Matches: 208, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
165 6 0.03
166 10 0.05
167 166 0.80
168 26 0.12
ACGTcount: A:0.51, C:0.07, G:0.14, T:0.28
Consensus pattern (167 bp):
TTTCAAAGAAAAAATAAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAA
TAAATAATGATGTTTAATGAATTTTAAAAATTGAAAACTAAGAAAAAACCCCTCGAAAAAATTTA
CAGAGTAGAAAATACCGTACTTCAAAAAAAAAGAAAG
Found at i:1865720 original size:232 final size:231
Alignment explanation
Indices: 1865303--1865766 Score: 829
Period size: 232 Copynumber: 2.0 Consensus size: 231
1865293 TCACGAAGTG
1865303 ACCATAAACTTGAGTTGCCACCAATCACTTTAATTTAGTCATGATCAGATGCCTATTGAAAATAA
1 ACCATAAACTTGAGTTGCCACCAATCACTTTAATTTAGTCATGATCAGATGCCTATTGAAAATAA
* **
1865368 TTACTAGAGATCCATTATTTTGGGTTCGGGAGTTGGTTACGTGTGGGGAAGAATTAGCACCCCAT
66 TTACTAGAGATCCATTATTTTGGGTTCGGGAGTTGGTTACGTATAAGGAAGAATTAGCACCCCAT
*
1865433 GACGCCGAAATCGGTGCCTTCTAATTATTTCTCACTTAAATCTTAATTTTCTCGATTCCATTTTT
131 GACACCGAAATCGGTGCCTTCTAATTATTTCTCACTTAAATCTTAATTTTCTCGATTCCATTTTT
1865498 ATCATTATTTAAATGTAATTCCCTCTAATGCATGAA
196 ATCATTATTTAAATGTAATTCCCTCTAATGCATGAA
** * *
1865534 ACCATAAACTTGGAGTTGCCACTGATCATTTTAATTTAGTCATGATCAGATGCTTATTGAAAATA
1 ACCATAAACTT-GAGTTGCCACCAATCACTTTAATTTAGTCATGATCAGATGCCTATTGAAAATA
1865599 ATTACTAGAGATCCATTATTTTGGGTTCGGGAGTTGGTTACGTATAAGGAAGAATTAGCACCCCA
65 ATTACTAGAGATCCATTATTTTGGGTTCGGGAGTTGGTTACGTATAAGGAAGAATTAGCACCCCA
*
1865664 TGACACCGAAATCGGTGCCTTCTAATTATTTCTCACTTAAATCTTGATTTTCTCGATTCCATTTT
130 TGACACCGAAATCGGTGCCTTCTAATTATTTCTCACTTAAATCTTAATTTTCTCGATTCCATTTT
*
1865729 TATCATTATTTAAATGTAATTTCCTCTAATGCATGAA
195 TATCATTATTTAAATGTAATTCCCTCTAATGCATGAA
1865766 A
1 A
1865767 TTTTGTACAA
Statistics
Matches: 222, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
231 11 0.05
232 211 0.95
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37
Consensus pattern (231 bp):
ACCATAAACTTGAGTTGCCACCAATCACTTTAATTTAGTCATGATCAGATGCCTATTGAAAATAA
TTACTAGAGATCCATTATTTTGGGTTCGGGAGTTGGTTACGTATAAGGAAGAATTAGCACCCCAT
GACACCGAAATCGGTGCCTTCTAATTATTTCTCACTTAAATCTTAATTTTCTCGATTCCATTTTT
ATCATTATTTAAATGTAATTCCCTCTAATGCATGAA
Found at i:1868064 original size:7 final size:7
Alignment explanation
Indices: 1868052--1868109 Score: 66
Period size: 7 Copynumber: 8.3 Consensus size: 7
1868042 TTCATTCTCT
1868052 TTTTTTC
1 TTTTTTC
1868059 TTTTTTC
1 TTTTTTC
1868066 TTTTTTC
1 TTTTTTC
1868073 -TTTTTC
1 TTTTTTC
1868079 TTCTTCTTC
1 TT-TT-TTC
**
1868088 TTCATT-
1 TTTTTTC
1868094 TTTTTTC
1 TTTTTTC
1868101 TTTTTTC
1 TTTTTTC
1868108 TT
1 TT
1868110 CCTCACTCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 10 0.23
7 26 0.60
8 2 0.05
9 5 0.12
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTTC
Found at i:1868688 original size:20 final size:20
Alignment explanation
Indices: 1868665--1868702 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1868655 TTTTCCTCCT
1868665 TTTTTGTCTTTT-TTTGTTGC
1 TTTTTGT-TTTTATTTGTTGC
1868685 TTTTTGTTTTTATTTGTT
1 TTTTTGTTTTTATTTGTT
1868703 TTTGTCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.03, C:0.05, G:0.13, T:0.79
Consensus pattern (20 bp):
TTTTTGTTTTTATTTGTTGC
Found at i:1868803 original size:4 final size:4
Alignment explanation
Indices: 1868794--1868826 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
1868784 CCCAGTTCAC
1868794 TCTT TCTT TCTT TCTT TCTT TCTCT T-TT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCT-T TCTT TCTT T
1868827 TTGTTAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 2 0.07
4 23 0.85
5 2 0.07
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:1869867 original size:22 final size:20
Alignment explanation
Indices: 1869820--1869878 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 20
1869810 TTTAATTTGG
*
1869820 TTCTTCATTATTTTTTTCAC
1 TTCTTCATTATTTTTTTCAA
*
1869840 TT-TTCATCATTTTTTATCAA
1 TTCTTCATTATTTTTT-TCAA
1869860 TTGCTTCATTATGTTTTTT
1 TT-CTTCATTAT-TTTTTT
1869879 ATGATTTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 12 0.38
20 7 0.22
22 8 0.25
23 5 0.16
ACGTcount: A:0.17, C:0.15, G:0.03, T:0.64
Consensus pattern (20 bp):
TTCTTCATTATTTTTTTCAA
Found at i:1870142 original size:4 final size:4
Alignment explanation
Indices: 1870133--1870168 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
1870123 TTCCTCATTT
*
1870133 TTTC TTTC TTTC TTTC TTTC TTTC TTTT TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1870169 ATTATTTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:1871437 original size:20 final size:20
Alignment explanation
Indices: 1871412--1871465 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1871402 GTTACAAGCA
*
1871412 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
1871432 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
1871452 ATGTATCGATACAA
1 ATGTATCGATACAA
1871466 ACAGTGGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:1871538 original size:19 final size:18
Alignment explanation
Indices: 1871488--1871550 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 18
1871478 TAGCTTCTGC
*
1871488 CAATTTCATGTATCGATA
1 CAATGTCATGTATCGATA
1871506 CAATTGTCCATGTATCGATA
1 CAA-TGT-CATGTATCGATA
1871526 CAATGATCATGTATCGATA
1 CAATG-TCATGTATCGATA
1871545 CAATGT
1 CAATGT
1871551 ATTGTTACAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
18 4 0.10
19 21 0.51
20 16 0.39
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (18 bp):
CAATGTCATGTATCGATA
Found at i:1872418 original size:21 final size:24
Alignment explanation
Indices: 1872389--1872446 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 24
1872379 TTGAAAATAT
1872389 ATGCAATTTTTATTTT-TTAAA-AA
1 ATGC-ATTTTTATTTTCTTAAACAA
**
1872412 ATG-ATTTACATTTTCTTAAACCAA
1 ATGCATTTTTATTTTCTTAAA-CAA
1872436 ATGCATTTTTA
1 ATGCATTTTTA
1872447 AAATTAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
21 9 0.33
22 5 0.19
23 3 0.11
24 5 0.19
25 5 0.19
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.48
Consensus pattern (24 bp):
ATGCATTTTTATTTTCTTAAACAA
Found at i:1874514 original size:20 final size:20
Alignment explanation
Indices: 1874489--1874547 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
1874479 TTTTTATTTT
1874489 AATAATATATGGGAAATATA
1 AATAATATATGGGAAATATA
***
1874509 AATAATA-ATACTAACATATA
1 AATAATATATGGGAA-ATATA
1874529 AATAATATATGGGAAATAT
1 AATAATATATGGGAAATAT
1874548 TATTTTAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 4 0.13
20 23 0.74
21 4 0.13
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (20 bp):
AATAATATATGGGAAATATA
Found at i:1874705 original size:17 final size:17
Alignment explanation
Indices: 1874683--1874721 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
1874673 ATATTTTAAT
1874683 TTATATGTTAAATTAGA
1 TTATATGTTAAATTAGA
1874700 TTATATGTTAAATTAGA
1 TTATATGTTAAATTAGA
1874717 TTATA
1 TTATA
1874722 GGTTGTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (17 bp):
TTATATGTTAAATTAGA
Found at i:1876402 original size:80 final size:79
Alignment explanation
Indices: 1876201--1876553 Score: 336
Period size: 79 Copynumber: 4.5 Consensus size: 79
1876191 AAAAATAGGG
* * * * **
1876201 TTGGAGTATCCCCTCGAAAACAACGGGGTTGGAGTATCCTCGATGGTGAAAAATCGATATTTTGG
1 TTGGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCTCGATGGTGAAAAATTGATATTTTAA
1876266 AAATAAAACC-AGA
66 AAATAAAACCGAGA
* * * * * * *
1876279 GTTGGAATATCTACTTTG-AAATAACGGGGTTAAAGTATCCTCGATGGTAAAAAAATTGATA-TT
1 -TTGGAGTATC-CCCTCGAAAATAACGAGGTTAGAGTATCCTCGATGGT-GAAAAATTGATATTT
* *
1876342 TAAAAATAGAACCGGGA
63 TAAAAATAAAACCGAGA
* *
1876359 TTGGAGTATCCCCTCGAAAATAACTGAGGTTAGAGTATCCTCGATAGTGGAAAATTGATATTTTA
1 TTGGAGTATCCCCTCGAAAATAAC-GAGGTTAGAGTATCCTCGATGGTGAAAAATTGATATTTTA
*
1876424 AAAATAAAATCGAGA
65 AAAATAAAACCGAGA
* * * * * * ** *
1876439 TTGGATTATCCTCTCGAAAATAACAAGGTTGGAGTATCCCCGGTGACGAAAAATTGATATTTTGA
1 TTGGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCTCGATGGTGAAAAATTGATATTTTAA
** * *
1876504 AAATAAAAATGGGG
66 AAATAAAACCGAGA
** *
1876518 TTGGAGTATCCCCTTAAAAATAATG-GGTTAGAGTAT
1 TTGGAGTATCCCCTCGAAAATAACGAGGTTAGAGTAT
1876554 TCCCTTGGAA
Statistics
Matches: 221, Mismatches: 47, Indels: 13
0.79 0.17 0.05
Matches are distributed among these distances:
78 13 0.06
79 135 0.61
80 73 0.33
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGAAAATAACGAGGTTAGAGTATCCTCGATGGTGAAAAATTGATATTTTAA
AAATAAAACCGAGA
Found at i:1876491 original size:159 final size:158
Alignment explanation
Indices: 1876201--1876553 Score: 385
Period size: 159 Copynumber: 2.2 Consensus size: 158
1876191 AAAAATAGGG
* * * * **
1876201 TTGGAGTATCCCCTCGAAAACAACGGGGTTGGAGTATCCTCGATGGTGAAAAATCGATATTTTGG
1 TTGGAGTATCCCCTCGAAAATAACTGGGTTAGAGTATCCTCGATAGTGAAAAATCGATATTTTAA
* ** *
1876266 AAATAAAACCAGAGTTGGAATATCTACTTTGAAATAACGGGGTTAAAGTATCCTCGATGGTA-AA
66 AAATAAAACCAGAGTTGGAATATCTACTTCGAAATAACAAGGTTAAAGTATCCCCGAT-G-ACAA
* *
1876330 AAAATTGATA-TTTAAAAATAGAACCGGGA
129 AAAATTGATATTTTAAAAATAAAAACGGGA
* *
1876359 TTGGAGTATCCCCTCGAAAATAACTGAGGTTAGAGTATCCTCGATAGTGGAAAATTGATATTTTA
1 TTGGAGTATCCCCTCGAAAATAACTG-GGTTAGAGTATCCTCGATAGTGAAAAATCGATATTTTA
* * ** *
1876424 AAAATAAAATC-GAGATTGGATTATC--CTCTCGAAAATAACAAGGTTGGAGTATCCCCGGTGAC
65 AAAATAAAACCAGAG-TTGGAATATCTACT-TCG-AAATAACAAGGTTAAAGTATCCCCGATGAC
* * * *
1876486 GAAAAATTGATATTTTGAAAATAAAAATGGGG
127 AAAAAATTGATATTTTAAAAATAAAAACGGGA
**
1876518 TTGGAGTATCCCCTTAAAAATAA-TGGGTTAGAGTAT
1 TTGGAGTATCCCCTCGAAAATAACTGGGTTAGAGTAT
1876554 TCCCTTGGAA
Statistics
Matches: 164, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
157 14 0.09
158 43 0.26
159 107 0.65
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (158 bp):
TTGGAGTATCCCCTCGAAAATAACTGGGTTAGAGTATCCTCGATAGTGAAAAATCGATATTTTAA
AAATAAAACCAGAGTTGGAATATCTACTTCGAAATAACAAGGTTAAAGTATCCCCGATGACAAAA
AATTGATATTTTAAAAATAAAAACGGGA
Found at i:1878506 original size:249 final size:249
Alignment explanation
Indices: 1878060--1878552 Score: 790
Period size: 249 Copynumber: 2.0 Consensus size: 249
1878050 TGAATACGAA
*
1878060 TGTCATCGTTATGAAGATGCAAACAACATGAAAACCAAGGAACAACAAGGTCCTAAGCTACCATA
1 TGTCATCGTTATGAAGATACAAACAACATGAAAACCAAGGAACAACAAGGTCCTAAGCTACCATA
* * *
1878125 ACCAAAATCACAAGAATGCATTAATGCATGGAAGTCCTAAGGTACTCATGAACATGATAGAGGTT
66 ACCAAAACCACAAGAAAGCATGAATGCATGGAAGTCCTAAGGTACTCATGAACATGATAGAGGTT
* *
1878190 TACCAAGATGACATTAACGGAAAAAAATAGAAACTAAAAAAGATTAAGGTAAAGATGATACACCA
131 TACCAAGATGACATTAACGGAAAAAAACAGAAACAAAAAAAGATTAAGGTAAAGATGATACACCA
*
1878255 AAAGGCTTGCACTTTTTTTTCAAAACAAGAGCTGTTGGCTTAGCTTTCTTGAAC
196 AAAGGCTTGCACTTTTTTTTCAAAACAAGAACTGTTGGCTTAGCTTTCTTGAAC
* * **
1878309 TGTCATGGTTATGAAGATACAAACAACATGAAAACCGAGGAACAACAAGGTGTTAAGCTACCATA
1 TGTCATCGTTATGAAGATACAAACAACATGAAAACCAAGGAACAACAAGGTCCTAAGCTACCATA
* * * *
1878374 ACCAAAACCTCAAGAAAGCATGAATGCATTGG-AGTCTTAGGGTACTCATGAACTTGATAGAGGT
66 ACCAAAACCACAAGAAAGCATGAATGCA-TGGAAGTCCTAAGGTACTCATGAACATGATAGAGGT
* * *
1878438 TTACTAAGATGACATTAATGGAAAAAAACAGAAACAAAAAAAGATTAAGGTAAAGATGATATACC
130 TTACCAAGATGACATTAACGGAAAAAAACAGAAACAAAAAAAGATTAAGGTAAAGATGATACACC
* *
1878503 AAAAGGCTTGTACTTTTTTTTCAGAACAAGAACTGTTGGCTTAGCTTTCT
195 AAAAGGCTTGCACTTTTTTTTCAAAACAAGAACTGTTGGCTTAGCTTTCT
1878553 CCCTTTCTTT
Statistics
Matches: 223, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
249 220 0.99
250 3 0.01
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.24
Consensus pattern (249 bp):
TGTCATCGTTATGAAGATACAAACAACATGAAAACCAAGGAACAACAAGGTCCTAAGCTACCATA
ACCAAAACCACAAGAAAGCATGAATGCATGGAAGTCCTAAGGTACTCATGAACATGATAGAGGTT
TACCAAGATGACATTAACGGAAAAAAACAGAAACAAAAAAAGATTAAGGTAAAGATGATACACCA
AAAGGCTTGCACTTTTTTTTCAAAACAAGAACTGTTGGCTTAGCTTTCTTGAAC
Found at i:1879666 original size:7 final size:6
Alignment explanation
Indices: 1879640--1879664 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1879630 AAGTACGCAG
1879640 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
1879665 TAATGTTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:1884182 original size:22 final size:22
Alignment explanation
Indices: 1884114--1884183 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
1884104 ATAATAAAGT
*
1884114 ATTAAAC-TTTTAGTTTCAACG
1 ATTAAACTTTTTAATTTCAACG
* *
1884135 ATTAAAGTTCTGTTAA--TGAA-G
1 ATTAAACTT-T-TTAATTTCAACG
1884156 TATTAAACTTTTTAATTTCAACG
1 -ATTAAACTTTTTAATTTCAACG
1884179 ATTAA
1 ATTAA
1884184 GGTTTAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 13
0.67 0.09 0.24
Matches are distributed among these distances:
20 4 0.11
21 8 0.22
22 20 0.54
23 2 0.05
24 3 0.08
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (22 bp):
ATTAAACTTTTTAATTTCAACG
Found at i:1888476 original size:2 final size:2
Alignment explanation
Indices: 1888469--1888495 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1888459 AAGTTTAACA
1888469 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1888496 TGATAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1889015 original size:26 final size:25
Alignment explanation
Indices: 1888979--1889029 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
1888969 ACTAGAAAGA
1888979 TTAATAAATTAATAATAAATAATATT
1 TTAATAAATTAATAATAAAT-ATATT
*
1889005 TTAATATATTAATAATAAATATATT
1 TTAATAAATTAATAATAAATATATT
1889030 AAAAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
TTAATAAATTAATAATAAATATATT
Found at i:1889025 original size:23 final size:25
Alignment explanation
Indices: 1888978--1889037 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
1888968 CACTAGAAAG
1888978 ATTAATAAATTAATAATAAATAATAT
1 ATTAATAAATTAATAAT-AATAATAT
* *
1889004 TTTAATATATTAATAAT-A-AATAT
1 ATTAATAAATTAATAATAATAATAT
*
1889027 ATTAAAAAATT
1 ATTAATAAATT
1889038 TTAAAAATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 13 0.45
24 1 0.03
26 15 0.52
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTAATAAATTAATAATAATAATAT
Found at i:1889651 original size:11 final size:11
Alignment explanation
Indices: 1889637--1889679 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 11
1889627 ATTAATTTAA
1889637 TTTAAATTATT
1 TTTAAATTATT
1889648 TTTAATATATAATT
1 TTTAA-AT-T-ATT
1889662 TTTAAA-TATT
1 TTTAAATTATT
1889672 TTTAAATT
1 TTTAAATT
1889680 TTAAATTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 9 0.32
11 7 0.25
12 2 0.07
13 2 0.07
14 8 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTAAATTATT
Found at i:1891148 original size:18 final size:17
Alignment explanation
Indices: 1891113--1891176 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
1891103 AATATCAATT
*
1891113 TATATAATT-T-TTTTA
1 TATATAATTATATTTAA
1891128 TATTATAATTATATTTAA
1 TA-TATAATTATATTTAA
*
1891146 TATATTACTTATATTT-A
1 TATA-TAATTATATTTAA
*
1891163 TATAAATATTATAT
1 TATATA-ATTATAT
1891177 AATTTAGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
15 2 0.05
16 8 0.20
17 14 0.35
18 16 0.40
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (17 bp):
TATATAATTATATTTAA
Found at i:1891174 original size:17 final size:17
Alignment explanation
Indices: 1891135--1891176 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
1891125 TTATATTATA
*
1891135 ATTATATTTAATATATT
1 ATTATATTTAATATAAT
1891152 ACTTATATTT-ATATAAAT
1 A-TTATATTTAATAT-AAT
1891170 ATTATAT
1 ATTATAT
1891177 AATTTAGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTATATTTAATATAAT
Found at i:1895300 original size:52 final size:50
Alignment explanation
Indices: 1895191--1895310 Score: 141
Period size: 52 Copynumber: 2.3 Consensus size: 50
1895181 CTGAAAAGAA
* ** *
1895191 AATGTATCGATATATTCTGGGTTTTGGTCCAAATGTATCAATATATTATT
1 AATGTATCGATACATTCTGGGTTTTGACCCAAATGTATCAATACATTATT
* ** *
1895241 AATTGTATTGATACATTCTGGGTTTTTGACCCAAATGTATTGATACATTCTT
1 AA-TGTATCGATACATTCTGGG-TTTTGACCCAAATGTATCAATACATTATT
1895293 CAATGTATCGATACATTC
1 -AATGTATCGATACATTC
1895311 AGTTAAATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
50 2 0.03
51 17 0.29
52 37 0.64
53 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (50 bp):
AATGTATCGATACATTCTGGGTTTTGACCCAAATGTATCAATACATTATT
Found at i:1896814 original size:32 final size:32
Alignment explanation
Indices: 1896769--1896839 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
1896759 AAATTGTAAC
*
1896769 TGTATCGAAACATAAGTGTTGTATTGATACAA
1 TGTATCGAAACATAAGTGTTGTATCGATACAA
* *
1896801 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGAAACATAAGTGTTGTATCGATACAA
1896833 TGTATCG
1 TGTATCG
1896840 CTACGAAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGAAACATAAGTGTTGTATCGATACAA
Found at i:1902015 original size:20 final size:19
Alignment explanation
Indices: 1901990--1902032 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 19
1901980 TTTGGACCCC
1901990 TTTTTTGTTTGTTTATT-TTT
1 TTTTTTGTTT-TTT-TTGTTT
1902010 TTTTTTGTTTTTTTTGTTT
1 TTTTTTGTTTTTTTTGTTT
1902029 TTTT
1 TTTT
1902033 GGCACAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.09
19 10 0.45
20 10 0.45
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.88
Consensus pattern (19 bp):
TTTTTTGTTTTTTTTGTTT
Found at i:1902029 original size:16 final size:16
Alignment explanation
Indices: 1901990--1902033 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
1901980 TTTGGACCCC
*
1901990 TTTTTTGTTTGTTTAT
1 TTTTTTTTTTGTTTAT
*
1902006 TTTTTTTTTTGTTTTT
1 TTTTTTTTTTGTTTAT
1902022 TTTGTTTTTTTG
1 TTT-TTTTTTTG
1902034 GCACAAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.86
Consensus pattern (16 bp):
TTTTTTTTTTGTTTAT
Found at i:1915378 original size:8 final size:8
Alignment explanation
Indices: 1915365--1915400 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
1915355 CAAAAGCTAG
1915365 TTTTATTT
1 TTTTATTT
1915373 TTTTATTT
1 TTTTATTT
1915381 TTTTATTT
1 TTTTATTT
1915389 TTTTATTT
1 TTTTATTT
1915397 TTTT
1 TTTT
1915401 CTACCTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTATTT
Found at i:1915440 original size:11 final size:11
Alignment explanation
Indices: 1915418--1915464 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
1915408 TTTGTTTCTA
1915418 TTCTTCTCTCTT
1 TTCTT-TCTCTT
1915430 TTCTTTCTCTTT
1 TTCTTTCTC-TT
* *
1915442 TTTTTTCTTTT
1 TTCTTTCTCTT
1915453 TTCTTTCT-TT
1 TTCTTTCTCTT
1915463 TT
1 TT
1915465 TTTATTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 4 0.13
11 13 0.42
12 14 0.45
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTCTTTCTCTT
Found at i:1915450 original size:21 final size:21
Alignment explanation
Indices: 1915426--1915467 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1915416 TATTCTTCTC
1915426 TCTTTTCTT-TCTCTTTTTTTT
1 TCTTTT-TTCTCTCTTTTTTTT
*
1915447 TCTTTTTTCTTTCTTTTTTTT
1 TCTTTTTTCTCTCTTTTTTTT
1915468 ATTTGAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TCTTTTTTCTCTCTTTTTTTT
Found at i:1915465 original size:11 final size:11
Alignment explanation
Indices: 1915418--1915465 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
1915408 TTTGTTTCTA
*
1915418 TTCTTCTCTCTT
1 TTCTT-TCTTTT
1915430 TTCTTTCTCTTT
1 TTCTTTCT-TTT
*
1915442 TTTTTTCTTTT
1 TTCTTTCTTTT
1915453 TTCTTTCTTTT
1 TTCTTTCTTTT
1915464 TT
1 TT
1915466 TTATTTGAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
11 18 0.56
12 14 0.44
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTCTTTCTTTT
Found at i:1915466 original size:12 final size:12
Alignment explanation
Indices: 1915428--1915466 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
1915418 TTCTTCTCTC
1915428 TTTTCTTTCTCTT
1 TTTTCTTTCT-TT
1915441 TTTT-TTTC-TT
1 TTTTCTTTCTTT
1915451 TTTTCTTTCTTT
1 TTTTCTTTCTTT
1915463 TTTT
1 TTTT
1915467 TATTTGAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 6 0.25
11 4 0.17
12 10 0.42
13 4 0.17
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTCTTT
Found at i:1919591 original size:13 final size:13
Alignment explanation
Indices: 1919573--1919603 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1919563 ACATTTCTTC
1919573 ATGTATCGATACA
1 ATGTATCGATACA
1919586 ATGTATCGATACA
1 ATGTATCGATACA
*
1919599 TTGTA
1 ATGTA
1919604 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1919593 original size:33 final size:33
Alignment explanation
Indices: 1919556--1919619 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 33
1919546 ACAAGCTATT
1919556 TATCGATACATT-T-CTTCATGTATCGATACAATG
1 TATCGATACATTGTAC--CATGTATCGATACAATG
1919589 TATCGATACATTGTACCATGTATCGATACAA
1 TATCGATACATTGTACCATGTATCGATACAA
1919620 ATAGTGATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (33 bp):
TATCGATACATTGTACCATGTATCGATACAATG
Found at i:1919686 original size:64 final size:64
Alignment explanation
Indices: 1919586--1919746 Score: 272
Period size: 64 Copynumber: 2.5 Consensus size: 64
1919576 TATCGATACA
*
1919586 ATGTATCGATAC-A-TTGTACCATGTATCGATACAAATAGTGATAGGGTAGCTATTGCCAATTTC
1 ATGTATCGATACAATTTGT-CCATGTATCGATACAAATAGTGATAGGGTAGCTACTGCCAATTTC
1919649 ATGTATCGATACAATTTGTCCATGTATCGATACAAATAGTGATAGGGTAGCTACTGCCAATTTC
1 ATGTATCGATACAATTTGTCCATGTATCGATACAAATAGTGATAGGGTAGCTACTGCCAATTTC
* *
1919713 ATGTATCCATACAATTTGTCCACGTATCGATACA
1 ATGTATCGATACAATTTGTCCATGTATCGATACA
1919747 TTGAACATGT
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
63 12 0.13
64 77 0.83
65 4 0.04
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (64 bp):
ATGTATCGATACAATTTGTCCATGTATCGATACAAATAGTGATAGGGTAGCTACTGCCAATTTC
Found at i:1919745 original size:21 final size:21
Alignment explanation
Indices: 1919715--1919767 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 21
1919705 CCAATTTCAT
* **
1919715 GTATCCATACAATTTGTCCAC
1 GTATCGATACAATTTGAACAC
*
1919736 GTATCGATAC-A-TTGAACAT
1 GTATCGATACAATTTGAACAC
1919755 GTATCGATACAAT
1 GTATCGATACAAT
1919768 GTATCAATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 15 0.58
20 2 0.08
21 9 0.35
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (21 bp):
GTATCGATACAATTTGAACAC
Found at i:1920394 original size:15 final size:16
Alignment explanation
Indices: 1920371--1920410 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
1920361 CCCCTTTATG
1920371 TAAAAATTCT-CCCCT
1 TAAAAATTCTCCCCCT
*
1920386 TAAAGATTCTCCCCCT
1 TAAAAATTCTCCCCCT
1920402 TAAACAATT
1 TAAA-AATT
1920411 ATCTTCTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 9 0.43
17 3 0.14
ACGTcount: A:0.35, C:0.30, G:0.03, T:0.33
Consensus pattern (16 bp):
TAAAAATTCTCCCCCT
Found at i:1922283 original size:13 final size:13
Alignment explanation
Indices: 1922265--1922303 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1922255 ATAATTGTCT
*
1922265 TGTATCGATACAG
1 TGTATCGATACAA
1922278 TGTATCGATACAA
1 TGTATCGATACAA
1922291 TGTATCGATACAA
1 TGTATCGATACAA
1922304 GGAATGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1926655 original size:24 final size:25
Alignment explanation
Indices: 1926623--1926669 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
1926613 ATGTGGCTAC
*
1926623 CATGGCTTTCTTCTTT-GGTTTGTT
1 CATGCCTTTCTTCTTTAGGTTTGTT
1926647 CATGCCTTTCTTCTTTAGGTTTG
1 CATGCCTTTCTTCTTTAGGTTTG
1926670 GAAAATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.06, C:0.19, G:0.19, T:0.55
Consensus pattern (25 bp):
CATGCCTTTCTTCTTTAGGTTTGTT
Found at i:1927057 original size:13 final size:13
Alignment explanation
Indices: 1927039--1927063 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1927029 CATAAAATGT
1927039 TGTATCGATACAA
1 TGTATCGATACAA
1927052 TGTATCGATACA
1 TGTATCGATACA
1927064 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1927057 original size:33 final size:33
Alignment explanation
Indices: 1927019--1927088 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1927009 TTCAACAATT
1927019 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1927052 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1927085 TGTA
1 TGTA
1927089 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1927147 original size:13 final size:13
Alignment explanation
Indices: 1927129--1927153 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1927119 ATTACTCACA
1927129 TGTATCGATACAT
1 TGTATCGATACAT
1927142 TGTATCGATACA
1 TGTATCGATACA
1927154 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1927220 original size:52 final size:52
Alignment explanation
Indices: 1927164--1927286 Score: 210
Period size: 52 Copynumber: 2.4 Consensus size: 52
1927154 CTGATCTTTG
*
1927164 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAATA
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATA
* *
1927216 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATA
*
1927268 TATCGATACATGCAAGCAA
1 TATCGATACATGCAGGCAA
1927287 CTTTTCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (52 bp):
TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATA
Found at i:1931085 original size:22 final size:18
Alignment explanation
Indices: 1931040--1931076 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
1931030 CACACTTCAT
1931040 AATCATTGGCTTGAATGA
1 AATCATTGGCTTGAATGA
1931058 AATCATTGGCTTGAATGA
1 AATCATTGGCTTGAATGA
1931076 A
1 A
1931077 CAATCTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (18 bp):
AATCATTGGCTTGAATGA
Found at i:1932094 original size:13 final size:13
Alignment explanation
Indices: 1932076--1932106 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1932066 ACATTTCTTC
1932076 ATGTATCGATACA
1 ATGTATCGATACA
1932089 ATGTATCGATACA
1 ATGTATCGATACA
*
1932102 TTGTA
1 ATGTA
1932107 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1932094 original size:33 final size:33
Alignment explanation
Indices: 1932056--1932219 Score: 112
Period size: 33 Copynumber: 5.0 Consensus size: 33
1932046 GTTACAAGCT
1932056 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
*
1932089 ATGTATCGATACATTGTACCATGTATCGATATA
1 ATGTATCGATACATTGTACCATGTATCGATACA
* ** * * * * *
1932122 A-ATAGT-GAT--AGGGTAGC-TACTACCAATTTC-
1 ATGTA-TCGATACATTGTACCAT-GTATCGA-TACA
*
1932152 ATGTATCGATACAATT-TATCCATTTATCGATACA
1 ATGTATCGATAC-ATTGTA-CCATGTATCGATACA
1932186 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
1932219 A
1 A
1932220 ATAGTGATAG
Statistics
Matches: 98, Mismatches: 19, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
29 1 0.01
30 11 0.11
31 6 0.06
32 5 0.05
33 52 0.53
34 21 0.21
35 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:1932222 original size:97 final size:97
Alignment explanation
Indices: 1932056--1932282 Score: 393
Period size: 97 Copynumber: 2.4 Consensus size: 97
1932046 GTTACAAGCT
*
1932056 ATGTATCGATAC-ATTTCTTCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
1 ATGTATCGATACAATTTATTCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
*
1932120 TAAATAGTGATAGGGTAGCTACTACCAATTTC
66 CAAATAGTGATAGGGTAGCTACTACCAATTTC
* *
1932152 ATGTATCGATACAATTTATCCATTTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
1 ATGTATCGATACAATTTATTCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
*
1932217 CAAATAGTGATAGGGTAGCTACTGCCAATTTC
66 CAAATAGTGATAGGGTAGCTACTACCAATTTC
*
1932249 ATGTATCGATACAATTTGTTCATGTATCGATACA
1 ATGTATCGATACAATTTATTCATGTATCGATACA
1932283 TTGAACGTGT
Statistics
Matches: 122, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
96 12 0.10
97 110 0.90
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (97 bp):
ATGTATCGATACAATTTATTCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
CAAATAGTGATAGGGTAGCTACTACCAATTTC
Found at i:1932272 original size:21 final size:21
Alignment explanation
Indices: 1932246--1932303 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 21
1932236 TACTGCCAAT
1932246 TTCATGTATCGATACAATTTG
1 TTCATGTATCGATACAATTTG
1932267 TTCATGTATCGATAC-A-TTG
1 TTCATGTATCGATACAATTTG
** *
1932286 AACGTGTATCGATACAAT
1 TTCATGTATCGATACAAT
1932304 GTATCGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 15 0.47
20 2 0.06
21 15 0.47
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Consensus pattern (21 bp):
TTCATGTATCGATACAATTTG
Found at i:1932308 original size:13 final size:13
Alignment explanation
Indices: 1932290--1932315 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1932280 ACATTGAACG
1932290 TGTATCGATACAA
1 TGTATCGATACAA
1932303 TGTATCGATACAA
1 TGTATCGATACAA
1932316 GGCAGCATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1936680 original size:6 final size:6
Alignment explanation
Indices: 1936662--1936734 Score: 65
Period size: 6 Copynumber: 12.2 Consensus size: 6
1936652 AATTTATGTG
* * * ** * *
1936662 TATATA TGTATA TACATA TATATA TATATA TGTACG TATGTA TGTATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* *
1936710 TATATA TATATA TGTATA TGTATA T
1 TATATA TATATA TATATA TATATA T
1936735 TTTACATCAG
Statistics
Matches: 52, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.48
Consensus pattern (6 bp):
TATATA
Found at i:1936686 original size:4 final size:4
Alignment explanation
Indices: 1936662--1936734 Score: 65
Period size: 4 Copynumber: 18.2 Consensus size: 4
1936652 AATTTATGTG
* * * ** * *
1936662 TATA TATG TATA TACA TATA TATA TATA TATG TACG TATG TATG TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* *
1936710 TATA TATA TATA TGTA TATG TATA T
1 TATA TATA TATA TATA TATA TATA T
1936735 TTTACATCAG
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 57 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.48
Consensus pattern (4 bp):
TATA
Found at i:1937094 original size:10 final size:9
Alignment explanation
Indices: 1937079--1937121 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
1937069 GTTGATTCCC
*
1937079 TTTTTAAAA
1 TTTTTTAAA
1937088 TTTTTTAAAA
1 TTTTTT-AAA
*
1937098 TTTTTTGAA
1 TTTTTTAAA
1937107 TTATTTTAAA
1 TT-TTTTAAA
1937117 TTTTT
1 TTTTT
1937122 ATCATTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 12 0.41
10 17 0.59
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:1938272 original size:16 final size:16
Alignment explanation
Indices: 1938243--1938286 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
1938233 ATATTAATTT
*
1938243 TTTAAATAAATTTAAG
1 TTTAAATTAATTTAAG
* *
1938259 TTTAAATTACTTTAAT
1 TTTAAATTAATTTAAG
*
1938275 TTTGAATTAATT
1 TTTAAATTAATT
1938287 CTTATTTAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (16 bp):
TTTAAATTAATTTAAG
Found at i:1939488 original size:16 final size:16
Alignment explanation
Indices: 1939469--1939576 Score: 53
Period size: 16 Copynumber: 6.8 Consensus size: 16
1939459 AAAAATAGCT
1939469 TGAACTCGAAATAACC
1 TGAACTCGAAATAACC
* **
1939485 TGAA-TCCATAATGGCC
1 TGAACTCGA-AATAACC
*
1939501 TGAACTTGAAATAA-C
1 TGAACTCGAAATAACC
* * *
1939516 TCGAA-TCTAAAATGATC
1 T-GAACTC-GAAATAACC
*
1939533 TGAACCCGAAATGAACC
1 TGAACTCGAAAT-AACC
*
1939550 -GAACTCGAAATGACC
1 TGAACTCGAAATAACC
**
1939565 CAAACTCGAAAT
1 TGAACTCGAAAT
1939577 GACTCGAACC
Statistics
Matches: 67, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
15 9 0.13
16 51 0.76
17 7 0.10
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.20
Consensus pattern (16 bp):
TGAACTCGAAATAACC
Found at i:1939536 original size:32 final size:32
Alignment explanation
Indices: 1939469--1939595 Score: 91
Period size: 32 Copynumber: 4.0 Consensus size: 32
1939459 AAAAATAGCT
* *
1939469 TGAACTCGAAATAACCTGAATCCATAATGGCC
1 TGAACTCGAAATAACCTGAATCCAAAATGACC
* * *
1939501 TGAACTTGAAATAA-CTCGAATCTAAAATGATC
1 TGAACTCGAAATAACCT-GAATCCAAAATGACC
* *
1939533 TGAACCCGAAATGAACC-GAA-CTCGAAATGACC
1 TGAACTCGAAAT-AACCTGAATC-CAAAATGACC
** * *
1939565 CAAACTCGAAATGA-CTCGAACCCAAAATGAC
1 TGAACTCGAAATAACCT-GAATCCAAAATGAC
1939596 TCGAACAATT
Statistics
Matches: 73, Mismatches: 15, Indels: 14
0.72 0.15 0.14
Matches are distributed among these distances:
30 1 0.01
31 4 0.05
32 64 0.88
33 3 0.04
34 1 0.01
ACGTcount: A:0.42, C:0.24, G:0.15, T:0.19
Consensus pattern (32 bp):
TGAACTCGAAATAACCTGAATCCAAAATGACC
Found at i:1939592 original size:16 final size:16
Alignment explanation
Indices: 1939525--1939601 Score: 77
Period size: 16 Copynumber: 4.8 Consensus size: 16
1939515 CTCGAATCTA
1939525 AAATGA-TCTGAACCCG
1 AAATGACTC-GAACCCG
*
1939541 AAATGAAC-CGAACTCG
1 AAATG-ACTCGAACCCG
* * *
1939557 AAATGACCCAAACTCG
1 AAATGACTCGAACCCG
*
1939573 AAATGACTCGAACCCA
1 AAATGACTCGAACCCG
1939589 AAATGACTCGAAC
1 AAATGACTCGAAC
1939602 AATTAACTCG
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
15 2 0.04
16 48 0.92
17 2 0.04
ACGTcount: A:0.43, C:0.27, G:0.16, T:0.14
Consensus pattern (16 bp):
AAATGACTCGAACCCG
Found at i:1940809 original size:31 final size:31
Alignment explanation
Indices: 1940772--1940835 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
1940762 TTAATAGATG
1940772 AAAAAAA-TAC-AGCAAATTAAAAATGAAATAA
1 AAAAAAAGTACAAGCAAA--AAAAATGAAATAA
* *
1940803 AAAAAAAGTACAAGTACAAAAAATGAAATAA
1 AAAAAAAGTACAAGCAAAAAAAATGAAATAA
1940834 AA
1 AA
1940836 GTTTAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 22 0.76
32 3 0.10
33 4 0.14
ACGTcount: A:0.72, C:0.06, G:0.08, T:0.14
Consensus pattern (31 bp):
AAAAAAAGTACAAGCAAAAAAAATGAAATAA
Found at i:1943560 original size:2 final size:2
Alignment explanation
Indices: 1943553--1943578 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1943543 ATTCCTGTGA
1943553 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1943579 GATTTTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1944265 original size:16 final size:17
Alignment explanation
Indices: 1944246--1944293 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
1944236 ATAAAGATAA
1944246 ATATTTATAAATAA-TT
1 ATATTTATAAATAACTT
*
1944262 ATATTTTAAAAATAACTT
1 ATA-TTTATAAATAACTT
1944280 -TATTTATAATATAA
1 ATATTTATAA-ATAA
1944294 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 9 0.33
17 16 0.59
18 2 0.07
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATTTATAAATAACTT
Found at i:1945901 original size:16 final size:17
Alignment explanation
Indices: 1945880--1945932 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 17
1945870 TTTTAAATAT
1945880 TTAATATGT-ATCTAAA
1 TTAATATGTAATCTAAA
* *
1945896 TTAATATGTAATTTAAT
1 TTAATATGTAATCTAAA
1945913 TTAATAT-TAAT-TAAA
1 TTAATATGTAATCTAAA
*
1945928 ATAAT
1 TTAAT
1945933 TTTAAGATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 7 0.22
16 13 0.41
17 12 0.38
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (17 bp):
TTAATATGTAATCTAAA
Found at i:1948915 original size:28 final size:28
Alignment explanation
Indices: 1948875--1948946 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
1948865 GGAACAAAGC
** *
1948875 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
1948903 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
1948931 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
1948947 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:1948917 original size:107 final size:108
Alignment explanation
Indices: 1948791--1949031 Score: 299
Period size: 108 Copynumber: 2.2 Consensus size: 108
1948781 TTTTGGAGAT
* * *
1948791 AATAACGGGGTTGGAGTATCCTCTC-A-AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAA
1 AATAACGGGGTTGGAGTATCC-C-CGATAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAA
* * *
1948854 TCAATA-TTTTGGGAACAAAGCCGGGGTTGGAGTATCCCCTCGGA
64 TCAATATTTTTGGAAACAAAACCGGAGTTGGAGTATCCCCTCGGA
* * * * * *
1948898 AGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAATT
1 AATAACGGGGTTGGAGTATCCCCGATAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATC
** * *
1948963 GGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCTCGGA
66 AATATTTTTGGAAACAAAACCGGAGTTGGAGTATCCCCTCGGA
1949006 AATAACGGGGTTGGAGTATCCCCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
1949032 TGTGAAGAAA
Statistics
Matches: 114, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
105 1 0.01
106 2 0.02
107 53 0.46
108 58 0.51
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (108 bp):
AATAACGGGGTTGGAGTATCCCCGATAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATC
AATATTTTTGGAAACAAAACCGGAGTTGGAGTATCCCCTCGGA
Found at i:1949080 original size:82 final size:80
Alignment explanation
Indices: 1948907--1949084 Score: 275
Period size: 80 Copynumber: 2.2 Consensus size: 80
1948897 AAGTAACGGG
* *
1948907 GTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAATTGGTATTTTT
1 GTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAAAAATTGGTATTTTT
1948972 GGAAATAAAATCGGA
66 GGAAATAAAATCGGA
** * * *
1948987 GTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTT
1 GTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAA-AAATTGGT-ATTT
1949052 TTGGAAATAAAATCGGA
64 TTGGAAATAAAATCGGA
1949069 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
1949085 TTATAGAAAA
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 45 0.52
81 8 0.09
82 34 0.39
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (80 bp):
GTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAAAAATTGGTATTTTT
GGAAATAAAATCGGA
Found at i:1949082 original size:54 final size:51
Alignment explanation
Indices: 1949015--1949145 Score: 165
Period size: 51 Copynumber: 2.5 Consensus size: 51
1949005 AAATAACGGG
* * *
1949015 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTG-AGAAATTAGTG--TCTTGAAAATAAAATCGGA
*
1949069 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAG-AAATTAGTGTCTTGAAAATAAAATCGGA
*
1949120 GTTGGAATATCCCCGATTGTGGAGAA
1 GTTGGAGTATCCCCGATTGT-GAGAA
1949146 TTGAGAAACT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
51 35 0.51
52 4 0.06
53 10 0.15
54 19 0.28
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATTAGTGTCTTGAAAATAAAATCGGA
Found at i:1951987 original size:55 final size:55
Alignment explanation
Indices: 1951903--1952800 Score: 1390
Period size: 55 Copynumber: 16.3 Consensus size: 55
1951893 ATAAATTGTA
* * * * *
1951903 TCCTGCTCATTGAGGAGT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* * *
1951958 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCCACTTGTGTGGGCTTTGAA-AAGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* * *
1952013 TCCTGCTCTTTGGGGAAT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1952068 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
1952123 TCCTGTTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
1952178 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
1952233 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGGGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
1952288 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
1952343 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGGGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1952398 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1952453 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1952508 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
1952563 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1952618 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1952673 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1952728 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1952783 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
1952801 AAAAAGCGGA
Statistics
Matches: 793, Mismatches: 33, Indels: 34
0.92 0.04 0.04
Matches are distributed among these distances:
54 20 0.03
55 751 0.95
56 22 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:1952232 original size:29 final size:29
Alignment explanation
Indices: 1952147--1952232 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
1952137 GACTAGAAAA
1952147 TGCCACCAACTTGTGTGGGCTTTAAGAGG
1 TGCCACCAACTTGTGTGGGCTTTAAGAGG
** * *
1952176 TGTCCTGC-TCTT-TG-GGGAC-TGAA-AGG
1 TG-CCACCAACTTGTGTGGG-CTTTAAGAGG
1952202 TGCCACCAACTTGTGTGGGCTTTAAGAGG
1 TGCCACCAACTTGTGTGGGCTTTAAGAGG
1952231 TG
1 TG
1952233 TCCTGCTCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
25 3 0.07
26 8 0.19
27 9 0.21
28 9 0.21
29 10 0.24
30 3 0.07
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.29
Consensus pattern (29 bp):
TGCCACCAACTTGTGTGGGCTTTAAGAGG
Found at i:1952585 original size:27 final size:27
Alignment explanation
Indices: 1952503--1952585 Score: 62
Period size: 27 Copynumber: 3.0 Consensus size: 27
1952493 GGGCTTTAAG
1952503 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
1952530 A-ATG-CCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGGAA
1952558 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
1952585 A
1 A
1952586 ATGCCACCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 11 0.30
28 10 0.27
29 5 0.14
30 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (27 bp):
AGGTGTCCTGCTCTTTGAGGACTGGAA
Found at i:1952640 original size:27 final size:27
Alignment explanation
Indices: 1952610--1952750 Score: 65
Period size: 27 Copynumber: 5.1 Consensus size: 27
1952600 TGTGAGCTTT
1952610 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
1952637 GAAA-ATG-CCACCAACTTGTGTGGGCTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGACTG
*
1952664 TAAGAGGTGTCCTGCTCTTTGAGGACTG
1 GAA-AGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
1952692 GAAA-ATG-CCACCAACTTGTGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
1952720 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
1952747 GAAA
1 GAAA
1952751 ATGCCACCAA
Statistics
Matches: 74, Mismatches: 30, Indels: 20
0.60 0.24 0.16
Matches are distributed among these distances:
25 6 0.08
26 10 0.14
27 23 0.31
28 19 0.26
29 10 0.14
30 6 0.08
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:1953804 original size:1 final size:1
Alignment explanation
Indices: 1953793--1953840 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
1953783 TTTTCCTTTG
* * ** *
1953793 TTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTGCTCTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1953841 GAAGAGAAGG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (1 bp):
T
Found at i:1953815 original size:19 final size:20
Alignment explanation
Indices: 1953788--1953840 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
1953778 CTCTCTTTTC
* *
1953788 CTTTGTTTTGTTTTTTTG-T
1 CTTTTTTTTTTTTTTTTGCT
*
1953807 TTTTTTTTTTTTTTTTTGCT
1 CTTTTTTTTTTTTTTTTGCT
1953827 CTTTTTTTTTTTTT
1 CTTTTTTTTTTTTT
1953841 GAAGAGAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.87
Consensus pattern (20 bp):
CTTTTTTTTTTTTTTTTGCT
Found at i:1953821 original size:17 final size:16
Alignment explanation
Indices: 1953789--1953841 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
1953779 TCTCTTTTCC
*
1953789 TTTGTTTTGTTTTTTTG
1 TTTGTTTT-TTTTTTTT
1953806 TTT-TTTTTTTTTTTT
1 TTTGTTTTTTTTTTTT
*
1953821 TTTGCTCTTTTTTTTTT
1 TTTG-TTTTTTTTTTTT
1953838 TTTG
1 TTTG
1953842 AAGAGAAGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 10 0.31
16 4 0.12
17 18 0.56
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (16 bp):
TTTGTTTTTTTTTTTT
Found at i:1956796 original size:1 final size:1
Alignment explanation
Indices: 1956790--1956872 Score: 112
Period size: 1 Copynumber: 83.0 Consensus size: 1
1956780 GCTTGGTTCA
* * * * *
1956790 GGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGAGGTGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
1956855 GGGGGGGGGGAGGGGGGG
1 GGGGGGGGGGGGGGGGGG
1956873 TGGTTGTGGG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 70 1.00
ACGTcount: A:0.02, C:0.00, G:0.93, T:0.05
Consensus pattern (1 bp):
G
Found at i:1956816 original size:23 final size:23
Alignment explanation
Indices: 1956790--1956875 Score: 127
Period size: 23 Copynumber: 3.6 Consensus size: 23
1956780 GCTTGGTTCA
1956790 GGGGGGGGGGTGGGGGGGGGGGGG
1 GGGGGGGGGGT-GGGGGGGGGGGG
1956814 GGGGGGGGGGTGGGGGGGGGGGG
1 GGGGGGGGGGTGGGGGGGGGGGG
*
1956837 GGGGGGGGGGAGGTGGTGGGGGGGG
1 GGGGGGGGGGTGG-GG-GGGGGGGG
1956862 GGGAGGGGGGGTGG
1 GGG-GGGGGGGTGG
1956876 TTGTGGGTTG
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
23 24 0.42
24 13 0.23
25 11 0.19
26 9 0.16
ACGTcount: A:0.02, C:0.00, G:0.92, T:0.06
Consensus pattern (23 bp):
GGGGGGGGGGTGGGGGGGGGGGG
Found at i:1956822 original size:24 final size:24
Alignment explanation
Indices: 1956790--1956872 Score: 130
Period size: 25 Copynumber: 3.4 Consensus size: 24
1956780 GCTTGGTTCA
1956790 GGGGGGGGGGTGGGGGGGGGGGGG
1 GGGGGGGGGGTGGGGGGGGGGGGG
1956814 GGGGGGGGGGTGGGGGGGGGGGGGG
1 GGGGGGGGGGT-GGGGGGGGGGGGG
*
1956839 GGGGGGGGAGGTGGTGGGGGGGGGG
1 GGGGGGGG-GGTGGGGGGGGGGGGG
*
1956864 GAGGGGGGG
1 GGGGGGGGG
1956873 TGGTTGTGGG
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
24 12 0.22
25 40 0.73
26 3 0.05
ACGTcount: A:0.02, C:0.00, G:0.93, T:0.05
Consensus pattern (24 bp):
GGGGGGGGGGTGGGGGGGGGGGGG
Found at i:1956881 original size:29 final size:25
Alignment explanation
Indices: 1956790--1956882 Score: 134
Period size: 26 Copynumber: 3.7 Consensus size: 25
1956780 GCTTGGTTCA
1956790 GGGGGGGGGGTGG-GGGGGGGGGGG
1 GGGGGGGGGGTGGTGGGGGGGGGGG
*
1956814 GGGGGGGGGGTGGGGGGGGGGGGGG
1 GGGGGGGGGGTGGTGGGGGGGGGGG
1956839 GGGGGGGGAGGTGGTGGGGGGGGGGG
1 GGGGGGGG-GGTGGTGGGGGGGGGGG
* *
1956865 AGGGGGGGTGGTTGTGGG
1 -GGGGGGGGGGTGGTGGG
1956883 TTGTTGTGTG
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
24 13 0.21
25 19 0.30
26 24 0.38
27 7 0.11
ACGTcount: A:0.02, C:0.00, G:0.89, T:0.09
Consensus pattern (25 bp):
GGGGGGGGGGTGGTGGGGGGGGGGG
Found at i:1956981 original size:18 final size:17
Alignment explanation
Indices: 1956959--1957051 Score: 56
Period size: 18 Copynumber: 5.6 Consensus size: 17
1956949 GTTGGGGGTG
1956959 TGGGTGGTTGGTGTGTT
1 TGGGTGGTTGGTGTGTT
**
1956976 TGGGGTGGGGGGTGTGGTT
1 T-GGGTGGTTGGTGT-GTT
*
1956995 AT-TGT-GTT-GTGTGTT
1 -TGGGTGGTTGGTGTGTT
1957010 T---TGG-TGGTGTGTT
1 TGGGTGGTTGGTGTGTT
*
1957023 TGGGTGGGTGGGTGTGTT
1 TGGGT-GGTTGGTGTGTT
*
1957041 TGGGGGGTTGG
1 TGGGTGGTTGG
1957052 GGGGTTTGGT
Statistics
Matches: 58, Mismatches: 8, Indels: 20
0.67 0.09 0.23
Matches are distributed among these distances:
12 2 0.03
13 9 0.16
14 1 0.02
15 3 0.05
16 5 0.09
17 9 0.16
18 25 0.43
19 3 0.05
20 1 0.02
ACGTcount: A:0.01, C:0.00, G:0.56, T:0.43
Consensus pattern (17 bp):
TGGGTGGTTGGTGTGTT
Found at i:1957052 original size:18 final size:18
Alignment explanation
Indices: 1957015--1957048 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1957005 GTGTTTTGGT
1957015 GGTGTGTTTGGGTGGGTG
1 GGTGTGTTTGGGTGGGTG
1957033 GGTGTGTTTGGG-GGGT
1 GGTGTGTTTGGGTGGGT
1957049 TGGGGGGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.00, C:0.00, G:0.62, T:0.38
Consensus pattern (18 bp):
GGTGTGTTTGGGTGGGTG
Found at i:1957058 original size:17 final size:18
Alignment explanation
Indices: 1957015--1957060 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
1957005 GTGTTTTGGT
*
1957015 GGTGTGTTTGGGTGGGTG
1 GGTGGGTTTGGGTGGGTG
*
1957033 GGTGTGTTTGGG-GGGTTG
1 GGTGGGTTTGGGTGGG-TG
1957051 GG-GGGTTTGG
1 GGTGGGTTTGG
1957061 TTGTGTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (18 bp):
GGTGGGTTTGGGTGGGTG
Found at i:1957162 original size:21 final size:20
Alignment explanation
Indices: 1957138--1957181 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
1957128 TGGGGTGGTT
*
1957138 GGGTGTTGTGAGGGGGGTGTG
1 GGGTATTGTG-GGGGGGTGTG
*
1957159 GGGTATTGTGGGTGGGTG-G
1 GGGTATTGTGGGGGGGTGTG
1957178 GGGT
1 GGGT
1957182 TGGGGGGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 7 0.33
21 9 0.43
ACGTcount: A:0.05, C:0.00, G:0.66, T:0.30
Consensus pattern (20 bp):
GGGTATTGTGGGGGGGTGTG
Found at i:1957179 original size:47 final size:43
Alignment explanation
Indices: 1957080--1957179 Score: 98
Period size: 47 Copynumber: 2.3 Consensus size: 43
1957070 GTGGGGGGTT
* *
1957080 GGTGGG-GGGGTGGGGGTGTGGGGGGGGGTGGGGGATGTTGTG
1 GGTGGGTGGGGTGGGGGTGTGGAGGGGGGTGGGGGATATTGTG
*
1957122 GG-GGTTTGGGGTGGTTGGGTGTTGTGAGGGGGGTGTGGGG-TATTGTG
1 GGTGG-GTGGGGTGG--GGGTG-TG-GAGGGGGGTG-GGGGATATTGTG
1957169 GGTGGGTGGGG
1 GGTGGGTGGGG
1957180 GTTGGGGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
41 2 0.04
42 2 0.04
43 7 0.15
45 5 0.11
46 2 0.04
47 22 0.48
48 6 0.13
ACGTcount: A:0.03, C:0.00, G:0.70, T:0.27
Consensus pattern (43 bp):
GGTGGGTGGGGTGGGGGTGTGGAGGGGGGTGGGGGATATTGTG
Found at i:1957189 original size:18 final size:18
Alignment explanation
Indices: 1957071--1957193 Score: 72
Period size: 18 Copynumber: 6.7 Consensus size: 18
1957061 TTGTGTTTTG
* *
1957071 TGGGGGGTTGGTGGGGGGG
1 TGGGGGGTGGGT-GGGGGT
*
1957090 TGGGGGTGTGGG-GGGGGG
1 TGGGGG-GTGGGTGGGGGT
* *
1957108 TGGGGGATGTTGTGGGGGT
1 TGGGGGGTG-GGTGGGGGT
* * *
1957127 T-TGGGGTGGTTGGGTGT
1 TGGGGGGTGGGTGGGGGT
*
1957144 TGTGAGGG-GGGTGTGGGGT
1 TG-GGGGGTGGGTG-GGGGT
* *
1957163 ATTGTGGGTGGGTGGGGGT
1 -TGGGGGGTGGGTGGGGGT
1957182 TGGGGGGTGGGT
1 TGGGGGGTGGGT
1957194 TTGGGGGTGT
Statistics
Matches: 79, Mismatches: 17, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
17 9 0.11
18 32 0.41
19 28 0.35
20 10 0.13
ACGTcount: A:0.02, C:0.00, G:0.70, T:0.28
Consensus pattern (18 bp):
TGGGGGGTGGGTGGGGGT
Found at i:1957199 original size:38 final size:36
Alignment explanation
Indices: 1957122--1957209 Score: 88
Period size: 38 Copynumber: 2.3 Consensus size: 36
1957112 GGATGTTGTG
* *
1957122 GGGGTTTGGGGTGGTTGGGTGTTGTGAGGGGGGTGT
1 GGGGTTTGGGGTGGGTGGGGGTTGTGAGGGGGGTGT
* *
1957158 GGGGTATTGTGGGTGGGTGGGGGTTG-GGGGGTGGGTTT
1 GGGGT-TTG-GGGTGGGTGGGGGTTGTGAGGG-GGGTGT
1957196 GGGGGTGTTGGGGT
1 -GGGGT-TTGGGGT
1957210 TGGTTGTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
36 5 0.12
37 7 0.16
38 23 0.53
39 8 0.19
ACGTcount: A:0.02, C:0.00, G:0.66, T:0.32
Consensus pattern (36 bp):
GGGGTTTGGGGTGGGTGGGGGTTGTGAGGGGGGTGT
Done.