Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold162
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1959167
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.30
Warning! 205334 characters in sequence are not A, C, G, or T
File 6 of 12
Found at i:806168 original size:101 final size:100
Alignment explanation
Indices: 805989--806171 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 100
805979 TGGCACCTTC
805989 AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
1 AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
* *
806054 CTTAAACAGCAGGACGCTCTCTCCTTTCACCTTTT
66 CTCAAACAACAGGACGCTCTCTCCTTTCACCTTTT
* * * *
806089 AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTTAAAGCCCATATAAGTTGGTGGCACTCTTC-AG
1 AGTCCTCAAAGAGCAGGACGCCTTCTCC-TTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAG
*
806153 TCCTCAAAGAACAGGACGC
64 TCCTCAAACAACAGGACGC
806172 CTTTTAAAGC
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 26 0.35
101 44 0.59
102 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (100 bp):
AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
CTCAAACAACAGGACGCTCTCTCCTTTCACCTTTT
Found at i:806241 original size:61 final size:61
Alignment explanation
Indices: 806085--806345 Score: 313
Period size: 61 Copynumber: 4.4 Consensus size: 61
806075 TCCTTTCACC
* * *
806085 TTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTTAAAGCCCATATAAGTTGGTGGCACT
1 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTTTAAAGCCCACACAAGTTGGTGGCACT
* * *
806147 CTTCAGTCCTCAAAGAACAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACTT
1 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-T
* * *
806203 TTTTAGTCCTCAAAGAGCAGAACG-CTTTTTCTTTTAAAGCCCACACAAGCTGGTGGCAC-
1 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * *
806262 CTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
1 TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
** *
806323 TCATAGTCCTCAAAGAGTAGGAC
1 TTTTAGTCCTCAAAGAGCAGGAC
806346 ACTCGCTCTT
Statistics
Matches: 168, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
55 26 0.15
56 23 0.14
59 21 0.12
60 32 0.19
61 46 0.27
62 20 0.12
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (61 bp):
TTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
Found at i:806269 original size:337 final size:336
Alignment explanation
Indices: 805649--806345 Score: 1189
Period size: 337 Copynumber: 2.1 Consensus size: 336
805639 CCTTTCACTT
* *
805649 TTCAATCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGACCACACAAGTTGGTGGCACCTTCTA
1 TTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGACCACACAAGTTGGTGGCACCTTCTA
* * * *
805714 GTCCTCAAAGAGCAGGACGCTTTCTCCTTTCACCCTTTAGTCTTCAAAGAGCTGGATGCCTTTTC
66 GTCCTCAAACAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCTGGACGCCTTTTC
* *
805779 CTTTTTAAAGCCTACACAAGTTGGTGGCACTCTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
131 CTTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCAGTCCTCAAAGAACAGGACGCCTTTTAAAG
* * *
805844 CCCACACAAGTTGGTGGCACTTTTTTAGTCCTCAAAGAGCAGGACGTTTTTTCTTTTAAAGCCTA
196 CCCACACAAGTTGGTGGCACTTTTTTAGTCCTCAAAGAGCAGAACGCTTTTTCTTTTAAAGCCCA
805909 CACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAA
261 CACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAA
805974 GCTGGTGGCACC
326 GCTGGTGGCA-C
*
805986 TTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTA
1 TTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGACCACACAAGTTGGTGGCACCTTCTA
* *
806051 GTCCTTAAACAGCAGGACGCTCTCTCCTTTCACCTTTTAGTCCTCAAAGAG-TAGGACGCCTTTT
66 GTCCTCAAACAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCT-GGACGCCTTTT
* *
806115 CCTTTTTAAAGCCCATATAAGTTGGTGGCACTCTTCAGTCCTCAAAGAACAGGACGCCTTTTAAA
130 CCTTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCAGTCCTCAAAGAACAGGACGCCTTTTAAA
806180 GCCCACACAAGTTGGTGGCACTTTTTTAGTCCTCAAAGAGCAGAACGCTTTTTCTTTTAAAGCCC
195 GCCCACACAAGTTGGTGGCACTTTTTTAGTCCTCAAAGAGCAGAACGCTTTTTCTTTTAAAGCCC
806245 ACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACA
260 ACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACA
*
806310 AGTTGGTGGCAC
325 AGCTGGTGGCAC
*
806322 TTCATAGTCCTCAAAGAGTAGGAC
1 TTC--AGTCCTCAAAGAGCAGGAC
806346 ACTCGCTCTT
Statistics
Matches: 339, Mismatches: 18, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
336 5 0.01
337 316 0.93
338 18 0.05
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (336 bp):
TTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGACCACACAAGTTGGTGGCACCTTCTA
GTCCTCAAACAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCTGGACGCCTTTTC
CTTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCAGTCCTCAAAGAACAGGACGCCTTTTAAAG
CCCACACAAGTTGGTGGCACTTTTTTAGTCCTCAAAGAGCAGAACGCTTTTTCTTTTAAAGCCCA
CACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAA
GCTGGTGGCAC
Found at i:806285 original size:277 final size:278
Alignment explanation
Indices: 805836--806495 Score: 821
Period size: 277 Copynumber: 2.4 Consensus size: 278
805826 GCAGGACGCC
* * * *
805836 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTTTAGTCCTCAAAGAGCAGGACGTTTTTTCTTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTCTTCAGTCCTCAAAGAACAGGACG----TCCTTTT
* *
805901 AAAGCCTACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGC
62 AAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGAACGCCTTCTCCTTTTAAAGC
805966 CCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACA
127 CCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACA
* * *
806031 CAAGTTGGTGGCACCTTC-TAGTCCTTAAACAGCAGGACGCTCTCTCCTTTCACC-TTTTAGTCC
192 CAAGTTGGTGGCA-CTTCATAGTCCTCAAACAGCAGGACACTCGCTCCTTTCACCTTTTTA-TCC
*
806094 TCAAAGAGTAGGACGCCTTTTCCT
255 TCAAAGAGCAGGACGCCTTTTCCT
* *
806118 TTTTAAAGCCCATATAAGTTGGTGGCAC-TCTTCAGTCCTCAAAGAACAGGACG-CCTTTTAAAG
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTCTTCAGTCCTCAAAGAACAGGACGTCCTTTTAAAG
* * * * *
806181 CCCACACAAGTTGGTGGCACTTTTTTAGTCCTCAAAGAGCAGAACG-CTTTTTCTTTTAAAGCCC
66 CCCACACAAGCTGGTGGCAC--CTTCAGTCCTCAAAGAGCAGAACGCCTTCTCCTTTTAAAGCCC
806245 ACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACA
129 ACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACA
* * *
806310 AGTTGGTGGCACTTCATAGTCCTCAAAGAGTAGGACACTCGCTCTTTTCACCTTTTTATCCTCAA
194 AGTTGGTGGCACTTCATAGTCCTCAAACAGCAGGACACTCGCTCCTTTCACCTTTTTATCCTCAA
*
806375 AGAGCAGGA------TGCC-
259 AGAGCAGGACGCCTTTTCCT
*** * *
806388 TTTTAAAGCCCACACAAGCCAGTGGCACCTTCTT---TCCTCAAAGAGCAGGATGCTTTCTCCTT
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCTTCAGTCCTCAAAGAACAGGA--C---GTCCTT
* *
806450 TTAAAGCCCACACAAGTTGGTGGCACTTTTCAGT-CTCAAAGAGCAG
60 TTAAAGCCCACACAAGCTGGTGGCAC-CTTCAGTCCTCAAAGAGCAG
806496 GACACACTTC
Statistics
Matches: 337, Mismatches: 29, Indels: 33
0.84 0.07 0.08
Matches are distributed among these distances:
269 15 0.04
270 22 0.07
271 5 0.01
272 4 0.01
273 12 0.04
274 7 0.02
275 30 0.09
276 31 0.09
277 137 0.41
278 26 0.08
281 22 0.07
282 26 0.08
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (278 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACTTCTTCAGTCCTCAAAGAACAGGACGTCCTTTTAAAG
CCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGAACGCCTTCTCCTTTTAAAGCCCAC
ACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAG
TTGGTGGCACTTCATAGTCCTCAAACAGCAGGACACTCGCTCCTTTCACCTTTTTATCCTCAAAG
AGCAGGACGCCTTTTCCT
Found at i:806626 original size:43 final size:43
Alignment explanation
Indices: 806507--806627 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 43
806497 ACACACTTCC
* *
806507 TTCCCTTCTTTTCCCTTTGGTCATCAAAGACCAGGATGCATTTTGT
1 TTCCCTT-TTTT-CCTTT-GTCCTCAAAGAGCAGGATGCATTTTGT
* * *
806553 TTTCC-TCTTTCTTTTGTCCT-ACAAGAGCAGGATGCATTTTGT
1 TTCCCTTTTTTCCTTTGTCCTCA-AAGAGCAGGATGCATTTTGT
*
806595 TTCCCTTTTTTCCTTTGTCCTCAAAAAGCAGGA
1 TTCCCTTTTTTCCTTTGTCCTCAAAGAGCAGGA
806628 CGTATTCTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.02
42 27 0.43
43 26 0.41
44 4 0.06
45 1 0.02
46 4 0.06
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (43 bp):
TTCCCTTTTTTCCTTTGTCCTCAAAGAGCAGGATGCATTTTGT
Found at i:807357 original size:20 final size:20
Alignment explanation
Indices: 807332--807388 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
807322 TTTTCACAAT
*
807332 TTGTATCAATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
807352 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
807372 TTGTATCGATACATTGT
1 TTGTATCGATACATTGT
807389 ATTGGTACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:807398 original size:33 final size:33
Alignment explanation
Indices: 807350--807479 Score: 128
Period size: 33 Copynumber: 4.1 Consensus size: 33
807340 ATACATTGTT
807350 CATTGTATCGATACATTGCT-CATTGTATCGATA
1 CATTGTATCGATACATT-CTGCATTGTATCGATA
* * ** *
807383 CATTGTATTGGTACATTCTGGGTT-TA-C-CTA
1 CATTGTATCGATACATTCTGCATTGTATCGATA
* *
807413 GA-TGTATCGATACATTTTGCATTGTATCGATA
1 CATTGTATCGATACATTCTGCATTGTATCGATA
*
807445 CATTGTATCGATACGTTGCT-CATTGTATCGATA
1 CATTGTATCGATACATT-CTGCATTGTATCGATA
807478 CA
1 CA
807480 CTTTACAATG
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
29 16 0.21
30 5 0.07
31 2 0.03
32 7 0.09
33 45 0.59
34 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (33 bp):
CATTGTATCGATACATTCTGCATTGTATCGATA
Found at i:807450 original size:13 final size:13
Alignment explanation
Indices: 807432--807458 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
807422 ATACATTTTG
807432 CATTGTATCGATA
1 CATTGTATCGATA
807445 CATTGTATCGATA
1 CATTGTATCGATA
807458 C
1 C
807459 GTTGCTCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:809886 original size:51 final size:52
Alignment explanation
Indices: 809824--809948 Score: 175
Period size: 51 Copynumber: 2.4 Consensus size: 52
809814 TCCCAGTTTC
*
809824 CATTTCCAAAACATCAATTTTTCT-TAATCGGGAATACTCCAAC-CTCGATTT
1 CATTTCCAAAACATCAATTTTTCTATAATCGGGAATACTCCAACTC-CGATAT
* ** *
809875 TATTTTTAAAACATCAA-TTTTCTATAATCGGGGATACTCCAACTCCGATAT
1 CATTTCCAAAACATCAATTTTTCTATAATCGGGAATACTCCAACTCCGATAT
809926 CATTTCCAAAACATCAATTTTTC
1 CATTTCCAAAACATCAATTTTTC
809949 ACAATTGGAG
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
50 6 0.10
51 51 0.81
52 6 0.10
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (52 bp):
CATTTCCAAAACATCAATTTTTCTATAATCGGGAATACTCCAACTCCGATAT
Found at i:809962 original size:51 final size:50
Alignment explanation
Indices: 809824--809969 Score: 161
Period size: 51 Copynumber: 2.9 Consensus size: 50
809814 TCCCAGTTTC
* *
809824 CATTTCCAAAACATCAATTTTTCTTAATCGGGAATACTCCAACCTCGATTT
1 CATTTCCAAAACATCAATTTTTCATAATCGGG-ATACTCCAACCTCGATAT
* **
809875 TATTTTTAAAACATCAA-TTTTCTATAATCGGGGATACTCCAA-CTCCGATAT
1 CATTTCCAAAACATCAATTTTTC-ATAATC-GGGATACTCCAACCT-CGATAT
* * *
809926 CATTTCCAAAACATCAATTTTTCACAATTGGAGATACTCTAACC
1 CATTTCCAAAACATCAATTTTTCATAATCGG-GATACTCCAACC
809970 CTGTTATTTC
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
50 9 0.12
51 60 0.77
52 9 0.12
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (50 bp):
CATTTCCAAAACATCAATTTTTCATAATCGGGATACTCCAACCTCGATAT
Found at i:810101 original size:28 final size:28
Alignment explanation
Indices: 810062--810138 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
810052 TTTTTTCATA
*
810062 ATCGGGGGTACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
* * * *
810090 ATCGGGGATACTCTAATCCCATTTTTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
810118 -T-GAGGAGATACTCCAACCCCG
1 ATCG-GG-GATACTCCAACCCCG
810139 GCTTTATATC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.03
27 3 0.08
28 35 0.90
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:810173 original size:109 final size:108
Alignment explanation
Indices: 809960--810481 Score: 629
Period size: 109 Copynumber: 4.8 Consensus size: 108
809950 CAATTGGAGA
* * **
809960 TACTCTAACCCTGTTATTTCATCGGGGATACTCCAATCTCATTTTTTTCCGAAGGGATACTCCAA
1 TACTCCAACCCCGTTATTTCATCGGGGATACTCCAATC-CCGTTTTTTCCG-AGGGATACTCCAA
* * * *
810025 CCCCAGCTTCATATCTAAAGTATTAATTTTTTTCATAATCGGGGG
64 CCCCGGCTTTATATCTAAAATATTGATTTTTTTCATAATCGGGGG
* * *
810070 TACTCCAACCCCGTTATTTCATCGGGGATACTCTAATCCCATTTTTTCTGAGGAGATACTCCAAC
1 TACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTTTTTCCGAGG-GATACTCCAAC
*
810135 CCCGGCTTTATATCTAAAATATTGATTTTTTTCATAATCGAGGG
65 CCCGGCTTTATATCTAAAATATTGATTTTTTTCATAATCGGGGG
* * * * *
810179 TACTCCAATCCCGTTTTTTCATCAGGGATACTCCAATCCCGTTATTTCTGAAGGGATACTCCAAC
1 TACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTTTTTCCG-AGGGATACTCCAAC
*
810244 CCCGGCTTTATATCTAAAATATTGATTTTTTTCATAATC-GAGG
65 CCCGGCTTTATATCTAAAATATTGATTTTTTTCATAATCGGGGG
* * *
810287 TGCTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTATTTT-CGAGGGGATACTCCAA
1 TACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTT-TTTTCCGA-GGGATACTCCAA
* *
810351 CCTTCGGCTTTATATCCAAAATATTGA-TTTTTTCATAATCGGGGGG
64 CC-CCGGCTTTATATCTAAAATATTGATTTTTTTCATAATC-GGGGG
* * ** * * *
810397 TACTCCAA-CCCATTATGTCATTAGGGATACTCCAATCCTGCTATTTCCGAGGGGATACTCCAAC
1 TACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTTTTTCCGA-GGGATACTCCAAC
* ** *
810461 CTCGATTTTATTTCTAAAATA
65 CCCGGCTTTATATCTAAAATA
810482 CCAATTTTTC
Statistics
Matches: 360, Mismatches: 44, Indels: 18
0.85 0.10 0.04
Matches are distributed among these distances:
107 1 0.00
108 89 0.25
109 222 0.62
110 48 0.13
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.35
Consensus pattern (108 bp):
TACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTTTTTCCGAGGGATACTCCAACC
CCGGCTTTATATCTAAAATATTGATTTTTTTCATAATCGGGGG
Found at i:810215 original size:28 final size:28
Alignment explanation
Indices: 810175--810247 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
810165 TTCATAATCG
* *
810175 AGGG-TACTCCAATCCCGTTTTTTCAT-C
1 AGGGATACTCCAATCCCGTTATTTC-TGA
810202 AGGGATACTCCAATCCCGTTATTTCTGA
1 AGGGATACTCCAATCCCGTTATTTCTGA
*
810230 AGGGATACTCCAACCCCG
1 AGGGATACTCCAATCCCG
810248 GCTTTATATC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 5 0.12
28 36 0.88
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (28 bp):
AGGGATACTCCAATCCCGTTATTTCTGA
Found at i:810322 original size:28 final size:27
Alignment explanation
Indices: 810289--810353 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 27
810279 AATCGAGGTG
810289 CTCCAACCTCGTTA-TTTCATCGGGGATA
1 CTCCAACCTCGTTATTTTCA--GGGGATA
*
810317 CTCCAACCCCGTTATTTTCGAGGGGATA
1 CTCCAACCTCGTTATTTTC-AGGGGATA
810345 CTCCAACCT
1 CTCCAACCT
810354 TCGGCTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 28 0.85
29 4 0.12
30 1 0.03
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.29
Consensus pattern (27 bp):
CTCCAACCTCGTTATTTTCAGGGGATA
Found at i:810347 original size:217 final size:218
Alignment explanation
Indices: 809973--810490 Score: 684
Period size: 217 Copynumber: 2.4 Consensus size: 218
809963 TCTAACCCTG
* * * * *
809973 TTATTTCATCGGGGATACTCCAATCTCATTTTTTTCCGAAGGGATACTCCAACCCCAGCTTCATA
1 TTATTTCATCAGGGATACTCCAATC-CAGTTATTTCCGAAGGGATACTCCAACCCCGGCTTTATA
* *
810038 TCTAAAGTATTAATTTTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTC
65 TCTAAAATATTAATTTTTTTCATAATCGGAGGTACTCCAACCCCGTTATTTCATCGGGGATACTC
* * *
810103 TAATCCCATTTTTTCTGAGGAGATACTCCAACC-CCGGCTTTATATCTAAAATATTGATTTTTTT
130 CAACCCCATTTTTTCTGAGGAGATACTCCAACCTCCGGCTTTATATCCAAAATATTGA-TTTTTT
*
810167 CATAATC-GAGGGTACTCCAATCCCG
194 CATAATCGGAGGGTACTCCAA-CCCA
* * *
810192 TTTTTTCATCAGGGATACTCCAATCCCGTTATTTCTGAAGGGATACTCCAACCCCGGCTTTATAT
1 TTATTTCATCAGGGATACTCCAATCCAGTTATTTCCGAAGGGATACTCCAACCCCGGCTTTATAT
* * *
810257 CTAAAATATTGATTTTTTTCATAATC-GAGGTGCTCCAACCTCGTTATTTCATCGGGGATACTCC
66 CTAAAATATTAATTTTTTTCATAATCGGAGGTACTCCAACCCCGTTATTTCATCGGGGATACTCC
* * *
810321 AACCCCGTTATTTTC-GAGGGGATACTCCAACCTTCGGCTTTATATCCAAAATATTGATTTTTTC
131 AACCCCATT-TTTTCTGAGGAGATACTCCAACCTCCGGCTTTATATCCAAAATATTGATTTTTTC
*
810385 ATAATCGGGGGGTACTCCAACCCA
195 ATAATCGGAGGGTACTCCAACCCA
* * * * * * ** *
810409 TTATGTCATTAGGGATACTCCAATCCTGCTATTTCCGAGGGGATACTCCAACCTCGATTTTATTT
1 TTATTTCATCAGGGATACTCCAATCCAGTTATTTCCGAAGGGATACTCCAACCCCGGCTTTATAT
**
810474 CTAAAATACCAATTTTT
66 CTAAAATATTAATTTTT
810491 CACAATCGGG
Statistics
Matches: 261, Mismatches: 35, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
217 141 0.54
218 97 0.37
219 23 0.09
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (218 bp):
TTATTTCATCAGGGATACTCCAATCCAGTTATTTCCGAAGGGATACTCCAACCCCGGCTTTATAT
CTAAAATATTAATTTTTTTCATAATCGGAGGTACTCCAACCCCGTTATTTCATCGGGGATACTCC
AACCCCATTTTTTCTGAGGAGATACTCCAACCTCCGGCTTTATATCCAAAATATTGATTTTTTCA
TAATCGGAGGGTACTCCAACCCA
Found at i:810520 original size:51 final size:51
Alignment explanation
Indices: 810447--810563 Score: 155
Period size: 51 Copynumber: 2.3 Consensus size: 51
810437 CTATTTCCGA
* *
810447 GGGGATACTCCAACCTCGATTTTATTTCTAAAATACCAATTTT-TCACAATC
1 GGGGATACTCCAACCTCAATTTTATTTCCAAAATACCAATTTTCT-ACAATC
* * * *
810498 GGGGATACTTCAACTTCAATTTTATTTCCAAAATACCGATTTTCTATAATC
1 GGGGATACTCCAACCTCAATTTTATTTCCAAAATACCAATTTTCTACAATC
*
810549 GGTGATACTCCAACC
1 GGGGATACTCCAACC
810564 CCGTTGTTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (51 bp):
GGGGATACTCCAACCTCAATTTTATTTCCAAAATACCAATTTTCTACAATC
Found at i:821935 original size:20 final size:19
Alignment explanation
Indices: 821906--821976 Score: 79
Period size: 20 Copynumber: 3.6 Consensus size: 19
821896 AAACAGAATA
*
821906 TATCGTTACATTGAAGAATG
1 TATCGATACATTGAA-AATG
* * *
821926 TATCAATACATTCATACATG
1 TATCGATACATTGA-AAATG
821946 TATCGATACATTGAAAAATG
1 TATCGATACATTG-AAAATG
821966 TATCGATACAT
1 TATCGATACAT
821977 CTAGATAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (19 bp):
TATCGATACATTGAAAATG
Found at i:821955 original size:90 final size:90
Alignment explanation
Indices: 821851--822046 Score: 250
Period size: 90 Copynumber: 2.2 Consensus size: 90
821841 AATTTTAACT
* * * *
821851 AAATGTATCGATACATTGAAAAATGTATCAATATATTTGGGA-AAAAAACAGAATATATCGTTAC
1 AAATGTATCGATACATTGAAAAATGTATCAATACATCT-AGATAAAAAACAGAATATATCGATAC
* * *
821915 ATTGAAGAATGTATCAATACATTCAT
65 AATAAAGAATGTATCAATACATTCAA
* * * *
821941 ACATGTATCGATACATTGAAAAATGTATCGATACATCTAGATAAAAAATAGAATGTATCGATACA
1 AAATGTATCGATACATTGAAAAATGTATCAATACATCTAGATAAAAAACAGAATATATCGATACA
* * *
822006 ATAAAGAATGTATCGATATATTGAA
66 ATAAAGAATGTATCAATACATTCAA
822031 AAATGTATCGATACAT
1 AAATGTATCGATACAT
822047 CTGGGTAAAA
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
89 2 0.02
90 88 0.98
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (90 bp):
AAATGTATCGATACATTGAAAAATGTATCAATACATCTAGATAAAAAACAGAATATATCGATACA
ATAAAGAATGTATCAATACATTCAA
Found at i:821994 original size:70 final size:71
Alignment explanation
Indices: 821920--822077 Score: 221
Period size: 70 Copynumber: 2.2 Consensus size: 71
821910 GTTACATTGA
* * *
821920 AGAATGTATCAATACATTCATA-CATGTATCGATACATTGAAAAATGTATCGATACATCTAGATA
1 AGAATGTATCGATACATT-AAAGAATGTATCGATACATTGAAAAATGTATCGATACATCTAGATA
*
821984 AAAA-AT
65 AAAAGAC
* * * *
821990 AGAATGTATCGATACAATAAAGAATGTATCGATATATTGAAAAATGTATCGATACATCTGGGTAA
1 AGAATGTATCGATACATTAAAGAATGTATCGATACATTGAAAAATGTATCGATACATCTAGATAA
822055 AAAGAC
66 AAAGAC
822061 AGAATGTATCGATACAT
1 AGAATGTATCGATACAT
822078 CTGGGTAAAA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
69 2 0.03
70 58 0.75
71 17 0.22
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.28
Consensus pattern (71 bp):
AGAATGTATCGATACATTAAAGAATGTATCGATACATTGAAAAATGTATCGATACATCTAGATAA
AAAGAC
Found at i:822013 original size:20 final size:21
Alignment explanation
Indices: 821990--822045 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
821980 GATAAAAAAT
821990 AGAATGTATCGATACAAT-AA
1 AGAATGTATCGATACAATGAA
* *
822010 AGAATGTATCGATATATTGAA
1 AGAATGTATCGATACAATGAA
822031 A-AATGTATCGATACA
1 AGAATGTATCGATACA
822046 TCTGGGTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 29 0.91
21 3 0.09
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.29
Consensus pattern (21 bp):
AGAATGTATCGATACAATGAA
Found at i:826645 original size:36 final size:36
Alignment explanation
Indices: 826603--826680 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
826593 AACAAAACTA
826603 CTTTTTAATCCATCAAATCTTTCAAGTAAAACCCAC
1 CTTTTTAATCCATCAAATCTTTCAAGTAAAACCCAC
**
826639 CTTTTTAATCCATCAAATCTTTCACTTAAAACCCAC
1 CTTTTTAATCCATCAAATCTTTCAAGTAAAACCCAC
826675 CTTTTT
1 CTTTTT
826681 GCTCTTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.32, C:0.28, G:0.01, T:0.38
Consensus pattern (36 bp):
CTTTTTAATCCATCAAATCTTTCAAGTAAAACCCAC
Found at i:829005 original size:13 final size:13
Alignment explanation
Indices: 828987--829013 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
828977 TTACCATTGT
828987 TTGTATCGATACA
1 TTGTATCGATACA
829000 TTGTATCGATACA
1 TTGTATCGATACA
829013 T
1 T
829014 AGCACATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:829022 original size:20 final size:20
Alignment explanation
Indices: 828997--829046 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
828987 TTGTATCGAT
828997 ACATTGTATCGATACAT-AGC
1 ACATTGTATCGATACATGA-C
829017 ACATTGTATCGATACATGAC
1 ACATTGTATCGATACATGAC
*
829037 AAATTGTATC
1 ACATTGTATC
829047 AATATATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (20 bp):
ACATTGTATCGATACATGAC
Found at i:830383 original size:16 final size:16
Alignment explanation
Indices: 830352--830392 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
830342 ATTTAATTCA
*
830352 TATATTTGTATTATATT
1 TATATTT-TTTTATATT
*
830369 TATGTTTTTTTATATT
1 TATATTTTTTTATATT
830385 TATATTTT
1 TATATTTT
830393 ACTTTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (16 bp):
TATATTTTTTTATATT
Found at i:830522 original size:15 final size:15
Alignment explanation
Indices: 830502--830530 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
830492 ATATTTGTGA
830502 TATATTTATATTTTT
1 TATATTTATATTTTT
830517 TATATTTATATTTT
1 TATATTTATATTTT
830531 ATTTTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TATATTTATATTTTT
Found at i:830605 original size:138 final size:139
Alignment explanation
Indices: 830352--830614 Score: 340
Period size: 138 Copynumber: 1.9 Consensus size: 139
830342 ATTTAATTCA
* *
830352 TATATTTGTATTATATTTATGTTTTTTTATATTTATATTTTACTTTAAAAATTACCTTTAAGTAG
1 TATATTTGTATTATATTTATGATTTTTTATATTTATATTTTACTTTAAAAATTACCTTTAAATAG
* * * *
830417 ATAATAAAACCGAAGTAAAATGAGGTTCAAATGTATAAATTCATCTTCAAAAATAAAAAAAATTA
66 ATAATAAAACCAAAGTAAAATGAGATCCAAATGTATAAATTCATCCTCAAAAATAAAAAAAATTA
830482 AATTATTTG
131 AATTATTTG
*
830491 TATATTTGTGA-TATATTTAT-ATTTTTTATATTTATATTTTATTTTAAAAA-TA-CTTTCAAAT
1 TATATTTGT-ATTATATTTATGATTTTTTATATTTATATTTTACTTTAAAAATTACCTTT-AAAT
** * *
830552 AGATAATAAAATTAAAGT--AATGCAAGAATCCAATTGTATAAATTCATCCTCAAAAATTAAAAA
64 AGATAATAAAACCAAAGTAAAATG--AG-ATCCAAATGTATAAATTCATCCTCAAAAATAAAAAA
830615 TTAAAAATAA
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
135 4 0.04
136 4 0.04
137 22 0.20
138 59 0.55
139 18 0.17
140 1 0.01
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (139 bp):
TATATTTGTATTATATTTATGATTTTTTATATTTATATTTTACTTTAAAAATTACCTTTAAATAG
ATAATAAAACCAAAGTAAAATGAGATCCAAATGTATAAATTCATCCTCAAAAATAAAAAAAATTA
AATTATTTG
Found at i:831789 original size:15 final size:14
Alignment explanation
Indices: 831750--831841 Score: 68
Period size: 14 Copynumber: 6.7 Consensus size: 14
831740 AATGATTTAT
* *
831750 TATTAAAATAATAA
1 TATTTAAATATTAA
831764 TATTTAAATATTAA
1 TATTTAAATATTAA
*
831778 TATTTCAGATATTAA
1 TATTT-AAATATTAA
*
831793 TATTTTAATCA-TAA
1 TATTTAAAT-ATTAA
*
831807 TATTT-AATGTTAA
1 TATTTAAATATTAA
*
831820 CATATT--ATATTAA
1 TAT-TTAAATATTAA
831833 TA-TTAAATA
1 TATTTAAATA
831842 CTTACAATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
11 2 0.03
13 18 0.29
14 29 0.46
15 14 0.22
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (14 bp):
TATTTAAATATTAA
Found at i:831832 original size:19 final size:19
Alignment explanation
Indices: 831797--831838 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
831787 TATTAATATT
*
831797 TTAATCATAATATTTAATG
1 TTAATCATAATATTTAATA
*
831816 TTAA-CATATTATATTAATA
1 TTAATCATAATAT-TTAATA
831835 TTAA
1 TTAA
831839 ATACTTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (19 bp):
TTAATCATAATATTTAATA
Found at i:832362 original size:30 final size:32
Alignment explanation
Indices: 832325--832398 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 32
832315 ATATTTAAAA
832325 ATTTAAAATATAGATTATGT-TAT-AATTT-ATT
1 ATTTAAAATATAGA-TAT-TATATAAATTTAATT
832356 A-TTAAAATA-AGATATTATATAAATTTAATT
1 ATTTAAAATATAGATATTATATAAATTTAATT
832386 ATTATAAAATATA
1 ATT-TAAAATATA
832399 TAATATTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
27 1 0.03
28 6 0.16
29 8 0.22
30 12 0.32
31 2 0.05
32 7 0.19
33 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (32 bp):
ATTTAAAATATAGATATTATATAAATTTAATT
Found at i:832399 original size:29 final size:29
Alignment explanation
Indices: 832348--832404 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
832338 ATTATGTTAT
*
832348 AATTTATTATTAAAATAAGATATTATATA
1 AATTTATTATTAAAATAAGATATAATATA
* *
832377 AATTTAATTATTATAA-AATATATAATAT
1 AATTT-ATTATTAAAATAAGATATAATAT
832405 TTTATTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
AATTTATTATTAAAATAAGATATAATATA
Found at i:832445 original size:27 final size:28
Alignment explanation
Indices: 832389--832446 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
832379 TTTAATTATT
* *
832389 ATAAAATATATAATATTTTATTATATTA
1 ATAAAATATATAATATTGTATTATAATA
*
832417 ATAAAATATA-AATA-TGTATGTTTAATA
1 ATAAAATATATAATATTGTAT-TATAATA
832444 ATA
1 ATA
832447 TTCAAATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.15
27 12 0.46
28 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (28 bp):
ATAAAATATATAATATTGTATTATAATA
Found at i:832532 original size:22 final size:23
Alignment explanation
Indices: 832493--832545 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
832483 AATTTTATAT
*
832493 TAATATTTTAATATTTAAAAATTAA
1 TAATA-TTAAATATTTAAAAA-TAA
*
832518 -AATATTAAATA-TTAAGAATAA
1 TAATATTAAATATTTAAAAATAA
832539 TAATATT
1 TAATATT
832546 TGGCTCAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 3 0.12
22 12 0.48
23 6 0.24
24 4 0.16
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TAATATTAAATATTTAAAAATAA
Found at i:832986 original size:27 final size:28
Alignment explanation
Indices: 832956--833011 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
832946 TAAAAAGTCT
* *
832956 AAAATCATATGCAAA-AGTCTGATTATA
1 AAAATAATATGCAAAGAGTCTAATTATA
**
832983 AAAATAATATTTAAAGAGTCTAATTATA
1 AAAATAATATGCAAAGAGTCTAATTATA
833011 A
1 A
833012 TTTTCATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.32
Consensus pattern (28 bp):
AAAATAATATGCAAAGAGTCTAATTATA
Found at i:837655 original size:20 final size:20
Alignment explanation
Indices: 837616--837671 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
837606 AAATTTTTAC
*
837616 AATGTATCGATATAATAAGTG
1 AATGTATCGATA-CATAAGTG
837637 AATGTATCGATACATAAGTG
1 AATGTATCGATACATAAGTG
837657 AATGTATCGATACAT
1 AATGTATCGATACAT
837672 GTCTAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 22 0.65
21 12 0.35
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATAAGTG
Found at i:837847 original size:51 final size:52
Alignment explanation
Indices: 837727--837847 Score: 154
Period size: 52 Copynumber: 2.3 Consensus size: 52
837717 TCTAGAAAGA
* * ** * * *
837727 AAATGTATCGATACATTTTTCATTGTATGGATATATTCTGGTTTTTTGACCC
1 AAATGTATCGATACATTATTCATTATATCAATACATTCTGGTGTTTTAACCC
* *
837779 AAATGTATCAATACATTATTCATTATATCAATACATTCTGG-GTTTTAACTC
1 AAATGTATCGATACATTATTCATTATATCAATACATTCTGGTGTTTTAACCC
837830 AAATGTATCGATACATTA
1 AAATGTATCGATACATTA
837848 AATGTATGGA
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
51 24 0.41
52 35 0.59
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (52 bp):
AAATGTATCGATACATTATTCATTATATCAATACATTCTGGTGTTTTAACCC
Found at i:837852 original size:17 final size:17
Alignment explanation
Indices: 837830--837863 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
837820 GTTTTAACTC
837830 AAATGTATCGATACATT
1 AAATGTATCGATACATT
*
837847 AAATGTATGGATACATT
1 AAATGTATCGATACATT
837864 CTTCAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
AAATGTATCGATACATT
Found at i:838284 original size:8 final size:8
Alignment explanation
Indices: 838271--838298 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
838261 TGATCTCAGC
838271 AAAAAAAT
1 AAAAAAAT
838279 AAAAAAAT
1 AAAAAAAT
838287 AAAAAAAT
1 AAAAAAAT
838295 AAAA
1 AAAA
838299 CTCTTAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:840137 original size:9 final size:9
Alignment explanation
Indices: 840121--840160 Score: 73
Period size: 9 Copynumber: 4.6 Consensus size: 9
840111 TACAAATACT
840121 TTTA-CATC
1 TTTATCATC
840129 TTTATCATC
1 TTTATCATC
840138 TTTATCATC
1 TTTATCATC
840147 TTTATCATC
1 TTTATCATC
840156 TTTAT
1 TTTAT
840161 TCACATCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 4 0.13
9 27 0.87
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (9 bp):
TTTATCATC
Found at i:840334 original size:97 final size:96
Alignment explanation
Indices: 840203--840395 Score: 226
Period size: 97 Copynumber: 2.0 Consensus size: 96
840193 AATTTTACTT
* * * * *
840203 ATCGAGATACTCCAACCTCATTCTTCCAAGGGAATAATCC-AACCCCATTTTTAAACTTGTCAAT
1 ATCGAGATACTCCAACCCCATTCTTCCAAAGGAAT-ACCCTAACCCCATTTTTAAACTTATCAAG
* * *
840267 ATTTAAATCTTATTTTTGCTTAAATTATCATC
65 ATTTAAATCTTATTCTCGCCTAAATTATCATC
* * * **
840299 ATCGAGGATACTCCAACCCCGTTTTTTCAAAGGAATACCCTAACCCTTTTTTTAAACTTATCAAG
1 ATCGA-GATACTCCAACCCCATTCTTCCAAAGGAATACCCTAACCCCATTTTTAAACTTATCAAG
* *
840364 ATTTAAATTTTATTCTCGCCTAAATTGTCATC
65 ATTTAAATCTTATTCTCGCCTAAATTATCATC
840396 GTTGAGGACA
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
96 8 0.10
97 72 0.90
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.37
Consensus pattern (96 bp):
ATCGAGATACTCCAACCCCATTCTTCCAAAGGAATACCCTAACCCCATTTTTAAACTTATCAAGA
TTTAAATCTTATTCTCGCCTAAATTATCATC
Found at i:846699 original size:58 final size:57
Alignment explanation
Indices: 846610--846732 Score: 135
Period size: 58 Copynumber: 2.1 Consensus size: 57
846600 CCACGATTTT
*
846610 GTGGCAACATTTTTAAAGTCCATGACTCTATGGCACCATTCT-TCAATGTCCACAACTCC
1 GTGGC-ACATTTTTAAAGTCCATGACTCTATGGCACCATT-TAT-AAAGTCCACAACTCC
* * *
846669 GTGGCACTTTTTTAAAGTTCACA-G-CTCTATGGCATCATTTATAAAGTTCACAACTCC
1 GTGGCACATTTTTAAAG-TC-CATGACTCTATGGCACCATTTATAAAGTCCACAACTCC
*
846726 ATGGCAC
1 GTGGCAC
846733 CCCTTCTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
57 20 0.36
58 26 0.46
59 8 0.14
60 2 0.04
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (57 bp):
GTGGCACATTTTTAAAGTCCATGACTCTATGGCACCATTTATAAAGTCCACAACTCC
Found at i:846836 original size:29 final size:29
Alignment explanation
Indices: 846610--846848 Score: 114
Period size: 29 Copynumber: 8.3 Consensus size: 29
846600 CCACGATTTT
* * ** *
846610 GTGGCAACATTTTTAAAGTCCATGACTCT
1 GTGGCACCCTTTTTAAAGTCCACAACTCC
* * * *
846639 ATGGCACCATTCTTCAATGTCCACAACTCC
1 GTGGCACCCTT-TTTAAAGTCCACAACTCC
* * * *
846669 GTGGCA-CTTTTTTAAAGTTCACAGCTCT
1 GTGGCACCCTTTTTAAAGTCCACAACTCC
* * * * *
846697 ATGGCATCATTTATAAAGTTCACAACTCC
1 GTGGCACCCTTTTTAAAGTCCACAACTCC
* * * * * *
846726 ATGGCACCCCTTCTAAAATCCATAACTCT
1 GTGGCACCCTTTTTAAAGTCCACAACTCC
*
846755 GTGGCACCCTTTTTCTAAAATCCAC-A-T--
1 GTGGCACCC-TTTT-TAAAGTCCACAACTCC
* ***
846782 -T-GCACCCCTTTTCAAAGTCTGTAACTCC
1 GTGGCA-CCCTTTTTAAAGTCCACAACTCC
*
846810 GTGGAACCCTTTTTAAAGTCCACAACTCC
1 GTGGCACCCTTTTTAAAGTCCACAACTCC
*
846839 GTGGCGCCCT
1 GTGGCACCCT
846849 CTAAAGTTTG
Statistics
Matches: 156, Mismatches: 43, Indels: 22
0.71 0.19 0.10
Matches are distributed among these distances:
24 5 0.03
25 8 0.05
26 5 0.03
28 18 0.12
29 88 0.56
30 23 0.15
31 9 0.06
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (29 bp):
GTGGCACCCTTTTTAAAGTCCACAACTCC
Found at i:846955 original size:32 final size:32
Alignment explanation
Indices: 846875--847221 Score: 242
Period size: 32 Copynumber: 10.9 Consensus size: 32
846865 TGTGACACTT
* * * *
846875 CTTTTTAAAGCCTACACAATTTGGTAGCAA-C
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACC
*
846906 CTTTTTCAAAAGCCCACACAAGTCAGTGGCAACC
1 CTTTTT--AAAGCCCACACAAGTCGGTGGCAACC
* *
846940 CTTTTTAAAGCCCACACAAGTCGATGG-AAAC
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACC
** * * ** *
846971 CTTTTTCAAAAG--CTTATAACTCTATGGCATCC
1 CTTTTT--AAAGCCCACACAAGTCGGTGGCAACC
* * *
847003 CTTTTTAAAGCCTACACAAGTCGGTGGTAACT
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACC
* * *
847035 CTTTTCAAAAGCCCACACAAGTCGATGGCAA-A
1 CTTTT-TAAAGCCCACACAAGTCGGTGGCAACC
* * * *
847067 CTTTTCAAAAGCCTACATAAGTTGGTGGC-ACC
1 CTTTT-TAAAGCCCACACAAGTCGGTGGCAACC
* * *
847099 CCTTTCAAAGCCCACACAAGTTGGTGGCAACC
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACC
* * ** *
847131 CCTTTCAAAGCCCACACAAGTTAGTGACAACC
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACC
* *
847163 CCTTTCAAAGCCCACAC-A-TCGGTGGCAACC
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACC
** * *
847193 CTTTCAAAAGCCCACATAATTCGGTGGCA
1 CTTTTTAAAGCCCACACAAGTCGGTGGCA
847222 TCTCCTTCTA
Statistics
Matches: 255, Mismatches: 48, Indels: 25
0.78 0.15 0.08
Matches are distributed among these distances:
30 26 0.10
31 48 0.19
32 130 0.51
33 44 0.17
34 7 0.03
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (32 bp):
CTTTTTAAAGCCCACACAAGTCGGTGGCAACC
Found at i:847128 original size:63 final size:63
Alignment explanation
Indices: 846881--847221 Score: 235
Period size: 63 Copynumber: 5.4 Consensus size: 63
846871 ACTTCTTTTT
* * * ** * **
846881 AAAGCCTACACAATTTGGTAGCAACCTTTTTCAAAAGCCCACACAAGTCAGTGGCAACCCTTTTT
1 AAAGCCCACACAAGTTGGTGGC-ACCCCTTTC-AAAGCCCACACAAGTCGGTGGCAACCCTTTCA
* * * ** ** * * ** * **
846946 AAAGCCCACACAAGTCGATGGAAACCTTTTTCAAAAG--CTTATAACTCTATGGCATCCCTTTTT
1 AAAGCCCACACAAGTTGGTGG-CACCCCTTTC-AAAGCCCACACAAGTCGGTGGCAACCCTTTCA
* * * * * * * *
847009 AAAGCCTACACAAGTCGGTGGTAACTCTTTTCAAAAGCCCACACAAGTCGATGGCAAACTTTTCA
1 AAAGCCCACACAAGTTGGTGG-CACCCCTTTC-AAAGCCCACACAAGTCGGTGGCAACCCTTTCA
* * *
847074 AAAGCCTACATAAGTTGGTGGCACCCCTTTCAAAGCCCACACAAGTTGGTGGCAACCCCTTTC-
1 AAAGCCCACACAAGTTGGTGGCACCCCTTTCAAAGCCCACACAAGTCGGTGGCAA-CCCTTTCA
* *
847137 AAAGCCCACACAAGTTAGTGACAACCCCTTTCAAAGCCCACAC-A-TCGGTGGCAACCCTTTCA
1 AAAGCCCACACAAGTTGGTGGC-ACCCCTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTCA
*
847199 AAAGCCCACATAA-TTCGGTGGCA
1 AAAGCCCACACAAGTT-GGTGGCA
847222 TCTCCTTCTA
Statistics
Matches: 224, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
61 10 0.04
62 25 0.11
63 92 0.41
64 32 0.14
65 65 0.29
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (63 bp):
AAAGCCCACACAAGTTGGTGGCACCCCTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTCA
Found at i:847515 original size:53 final size:53
Alignment explanation
Indices: 847451--847683 Score: 182
Period size: 52 Copynumber: 4.4 Consensus size: 53
847441 GCTATCGCTA
* *
847451 GCCTTAAATCAGCATATTGGCACTTTTTATCACCTCTAAGTTCGATATCATTG
1 GCCTTAAATCAGCATATTGGCACTTTTTATCACCTCTAAGTCCAATATCATTG
* * ** * *
847504 GCCTTGAATCAGCATATTGGCACCTTTTATTGCCTTTAAGTCCAATGTCATTG
1 GCCTTAAATCAGCATATTGGCACTTTTTATCACCTCTAAGTCCAATATCATTG
* * * * * * * ** *
847557 GCCTTTAATTAGCACATTGGCAC-TCTTGTCAACTTTAAGTCCAATATCGCTA
1 GCCTTAAATCAGCATATTGGCACTTTTTATCACCTCTAAGTCCAATATCATTG
* * * * * * * ** *
847609 GACTTGAATTAGCATATTAGCAC-CTTTATCATCTTTAAGTCCAATATCGCTA
1 GCCTTAAATCAGCATATTGGCACTTTTTATCACCTCTAAGTCCAATATCATTG
* *
847661 GCCTTAAATCAGCACATTAGCAC
1 GCCTTAAATCAGCATATTGGCAC
847684 CATTATCATC
Statistics
Matches: 148, Mismatches: 32, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
52 83 0.56
53 65 0.44
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (53 bp):
GCCTTAAATCAGCATATTGGCACTTTTTATCACCTCTAAGTCCAATATCATTG
Found at i:847619 original size:52 final size:52
Alignment explanation
Indices: 847563--847697 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 52
847553 ATTGGCCTTT
* * *
847563 AATTAGCACATTGGCA-CTCTTGTCAACTTTAAGTCCAATATCGCTAGACTTG
1 AATTAGCACATTAGCACCT-TTATCAACTTTAAGTCCAATATCGCTAGACTTA
* * *
847615 AATTAGCATATTAGCACCTTTATCATCTTTAAGTCCAATATCGCTAGCCTTA
1 AATTAGCACATTAGCACCTTTATCAACTTTAAGTCCAATATCGCTAGACTTA
* * *
847667 AATCAGCACATTAGCACCATTATCATCTTTA
1 AATTAGCACATTAGCACCTTTATCAACTTTA
847698 TGCCTAGTGT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 71 0.97
53 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (52 bp):
AATTAGCACATTAGCACCTTTATCAACTTTAAGTCCAATATCGCTAGACTTA
Found at i:847697 original size:104 final size:105
Alignment explanation
Indices: 847443--847697 Score: 262
Period size: 104 Copynumber: 2.4 Consensus size: 105
847433 TAGTGTTTGC
* * * * * * * * *
847443 TATCGCTAGCCTTAAATCAGCATATTGGCACTTTTTATCACCTCTAAGTTCGATATCATTGGCCT
1 TATCGCTAGCCTTAAATCAGCACATTGGCAC-TCTTATCAACTTTAAGTCCAATATCACTAGACT
* **
847508 TGAATCAGCATATTGGCACCTTTTATTGCCTTTAAGTCCAA
65 TGAATCAGCATATTAGCACCTTTTATCACCTTTAAGTCCAA
* ** * * * * *
847549 TGTCATTGGCCTTTAATTAGCACATTGGCACTCTTGTCAACTTTAAGTCCAATATCGCTAGACTT
1 TATCGCTAGCCTTAAATCAGCACATTGGCACTCTTATCAACTTTAAGTCCAATATCACTAGACTT
* *
847614 GAATTAGCATATTAGCACC-TTTATCATCTTTAAGTCCAA
66 GAATCAGCATATTAGCACCTTTTATCACCTTTAAGTCCAA
* *
847653 TATCGCTAGCCTTAAATCAGCACATTAGCAC-CATTATCATCTTTA
1 TATCGCTAGCCTTAAATCAGCACATTGGCACTC-TTATCAACTTTA
847698 TGCCTAGTGT
Statistics
Matches: 117, Mismatches: 31, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
103 1 0.01
104 51 0.44
105 41 0.35
106 24 0.21
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (105 bp):
TATCGCTAGCCTTAAATCAGCACATTGGCACTCTTATCAACTTTAAGTCCAATATCACTAGACTT
GAATCAGCATATTAGCACCTTTTATCACCTTTAAGTCCAA
Found at i:847716 original size:52 final size:53
Alignment explanation
Indices: 847557--847735 Score: 163
Period size: 52 Copynumber: 3.5 Consensus size: 53
847547 AATGTCATTG
* * * * *
847557 GCCTTTAAT-TAGCACATTGGCACTC-TTGTCAACTTTAAGTCCAATATCGCTA
1 GCCTTAAATCTAGCACATTAGCAC-CATTATCATCTTTAAGTCCAATATCGCAA
* * * * *
847609 GACTTGAAT-TAGCATATTAGCACCTTTATCATCTTTAAGTCCAATATCGCTA
1 GCCTTAAATCTAGCACATTAGCACCATTATCATCTTTAAGTCCAATATCGCAA
* * * *
847661 GCCTTAAATC-AGCACATTAGCACCATTATCATCTTTATG-CCTAGTGTTGCAA
1 GCCTTAAATCTAGCACATTAGCACCATTATCATCTTTAAGTCC-AATATCGCAA
*
847713 GCCTTGAATCTA-CACATTAGCAC
1 GCCTTAAATCTAGCACATTAGCAC
847736 ATTTGCCAAG
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
51 3 0.03
52 103 0.96
53 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.34
Consensus pattern (53 bp):
GCCTTAAATCTAGCACATTAGCACCATTATCATCTTTAAGTCCAATATCGCAA
Found at i:851614 original size:13 final size:13
Alignment explanation
Indices: 851596--851622 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
851586 CATGATTCAA
851596 TGTATCGATACAT
1 TGTATCGATACAT
851609 TGTATCGATACAT
1 TGTATCGATACAT
851622 T
1 T
851623 ATTCAATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:851620 original size:33 final size:33
Alignment explanation
Indices: 851576--851641 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
851566 GCCAAGGAAA
851576 TGTATCAATACATGATTCAATGTATCGATACAT
1 TGTATCAATACATGATTCAATGTATCGATACAT
* *
851609 TGTATCGATACATTATTCAATGTATCGATACAT
1 TGTATCAATACATGATTCAATGTATCGATACAT
851642 GCAGGCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (33 bp):
TGTATCAATACATGATTCAATGTATCGATACAT
Found at i:851634 original size:20 final size:19
Alignment explanation
Indices: 851574--851641 Score: 67
Period size: 20 Copynumber: 3.8 Consensus size: 19
851564 CTGCCAAGGA
*
851574 AATGTATCAATACATGATTC
1 AATGTATCGATACAT-ATTC
851594 AATGTATCGATAC--A-T-
1 AATGTATCGATACATATTC
851609 --TGTATCGATACATTATTC
1 AATGTATCGATACA-TATTC
851627 AATGTATCGATACAT
1 AATGTATCGATACAT
851642 GCAGGCAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
13 11 0.28
16 2 0.05
17 2 0.05
19 1 0.03
20 24 0.60
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
AATGTATCGATACATATTC
Found at i:859094 original size:22 final size:22
Alignment explanation
Indices: 859056--859097 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
859046 TGAAAGTAAA
859056 ATTCCATAAATTAAGGAATTTG
1 ATTCCATAAATTAAGGAATTTG
*
859078 ATTCCA-AAACTTTAGGAATT
1 ATTCCATAAA-TTAAGGAATT
859098 GAAATTCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (22 bp):
ATTCCATAAATTAAGGAATTTG
Found at i:859308 original size:333 final size:333
Alignment explanation
Indices: 858682--859298 Score: 839
Period size: 333 Copynumber: 1.8 Consensus size: 333
858672 TAAGTGCTAA
* **
858682 AATACTATCACAAGTAGAACTAGTGTTCTAGTGGGAGTAAAATTCCAAAAATTAAGGAATTTGAT
1 AATACTATCACAAATAGAACTAGTGTTCTAGTGAAAGTAAAATTCCAAAAATTAAGGAATTTGAT
** *
858747 TCCGTAATTTTAGGAATTGAAATTCTAATTGGATTTAGTAATTGTTATCCAATAATATTAAGATT
66 TCCAAAACTTTAGGAATTGAAATTCTAATTGGATTTAGTAATTGTTATCCAATAATATTAAGATT
* * * * *
858812 CCTAATTGCTAGGAAAATTTTGAATTTTAATTGCTTTCGGATATAAGGTTTCCTAAAAATTTTAT
131 ACTAAATGCTAGGAAAATTTTAAATTTTAATTGCTTTCGGAAAAAAGGTTTCCTAAAAATTTTAT
* ** *
858877 TTCATAAAATTATTAATTGTTGGAAACTAAGCCTCCTTAATATTCAGGAAAATTATGTAAGTGAT
196 TTCATAAAATTATTAATTGTTGGAAACTAAGCCTCCTAAATATTCAGGAAAATTACATAAGTCAT
*
858942 AATTTATCTATTGTATACAACTTTCCTAAAAGTTGGTCAAAAGTCTACCTTCTAAAAGGACACCG
261 AATTTATCTATTGTAGACAACTTTCCTAAAAGTTGGTCAAAAGTCTACCTTCTAAAAGGACACCG
859007 AGTGTTAG
326 AGTGTTAG
* * *
859015 AATACTATGACAAATAGAACTAGTTTTCTAGTGAAAGTAAAATTCCATAAATTAAGGAATTTGAT
1 AATACTATCACAAATAGAACTAGTGTTCTAGTGAAAGTAAAATTCCAAAAATTAAGGAATTTGAT
* * *
859080 TCCAAAACTTTAGGAATTGAAATTCTAGTTGGA-TTAGGTAATTGTTATCCAATAGA-ATTGAGT
66 TCCAAAACTTTAGGAATTGAAATTCTAATTGGATTTA-GTAATTGTTATCCAATA-ATATTAAGA
* * *
859143 TTACTAAATGTTAGGAAAATTTTCAAATTTTAATTGGTTTTGGAAAAAAGGTTTCCT-AAAATTT
129 TTACTAAATGCTAGGAAAATTTT-AAATTTTAATTGCTTTCGGAAAAAAGGTTTCCTAAAAATTT
* * * * *
859207 TATTTCTTGAAAA-TATTAATTTTTGGAAACTAA-CCTTCCTAAAATGTTTATGAAAATTACATA
193 TATTTCAT-AAAATTATTAATTGTTGGAAACTAAGCC-TCCT-AAATATTCAGGAAAATTACATA
** * *
859270 CTTCATAATTTGTCTGTTGTAGACAACTT
255 AGTCATAATTTATCTATTGTAGACAACTT
859299 CACAAAAGTT
Statistics
Matches: 244, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
332 5 0.02
333 167 0.68
334 72 0.30
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (333 bp):
AATACTATCACAAATAGAACTAGTGTTCTAGTGAAAGTAAAATTCCAAAAATTAAGGAATTTGAT
TCCAAAACTTTAGGAATTGAAATTCTAATTGGATTTAGTAATTGTTATCCAATAATATTAAGATT
ACTAAATGCTAGGAAAATTTTAAATTTTAATTGCTTTCGGAAAAAAGGTTTCCTAAAAATTTTAT
TTCATAAAATTATTAATTGTTGGAAACTAAGCCTCCTAAATATTCAGGAAAATTACATAAGTCAT
AATTTATCTATTGTAGACAACTTTCCTAAAAGTTGGTCAAAAGTCTACCTTCTAAAAGGACACCG
AGTGTTAG
Found at i:867249 original size:21 final size:21
Alignment explanation
Indices: 867225--867269 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
867215 TTAATTATTT
867225 TAAAACTAT-TTTAGGTCAAAA
1 TAAAA-TATATTTAGGTCAAAA
* *
867246 TAAAATATATTTAGTTTAAAA
1 TAAAATATATTTAGGTCAAAA
867267 TAA
1 TAA
867270 TATTAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (21 bp):
TAAAATATATTTAGGTCAAAA
Found at i:867459 original size:6 final size:7
Alignment explanation
Indices: 867435--867464 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
867425 TGGTTTTATG
867435 TTTTTAA
1 TTTTTAA
867442 TTTTTAA
1 TTTTTAA
*
867449 TTTTTAT
1 TTTTTAA
867456 TTTTTAA
1 TTTTTAA
867463 TT
1 TT
867465 ATTTTAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:867712 original size:14 final size:15
Alignment explanation
Indices: 867689--867735 Score: 69
Period size: 14 Copynumber: 3.1 Consensus size: 15
867679 ATTAATATGA
867689 TTTTATATTTTTAAT
1 TTTTATATTTTTAAT
867704 TTTTA-ATTTTTAAT
1 TTTTATATTTTTAAT
867718 TTTTATTCATTTTTAAT
1 TTTTA-T-ATTTTTAAT
867735 T
1 T
867736 ATTTTAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 14 0.48
15 5 0.17
17 10 0.34
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATATTTTTAAT
Found at i:867713 original size:6 final size:7
Alignment explanation
Indices: 867689--867722 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
867679 ATTAATATGA
867689 TTTTATAT
1 TTTTA-AT
867697 TTTTAAT
1 TTTTAAT
867704 TTTTAAT
1 TTTTAAT
867711 TTTTAAT
1 TTTTAAT
867718 TTTTA
1 TTTTA
867723 TTCATTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.81
8 5 0.19
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTAAT
Found at i:867841 original size:271 final size:267
Alignment explanation
Indices: 867308--867990 Score: 1022
Period size: 271 Copynumber: 2.6 Consensus size: 267
867298 GAATATTTGC
* * * * * *
867308 ATGAAATTATCTCTATTGTACTTGGTTTTGTGAAAATCCTATTTGGTTATATATAAGCTCATAAA
1 ATGAAATTATCTCTATTTTACTTGATTTTGAGAAAATCCTATTTGTTTATATATAAACTCATTAA
* * * *
867373 TATGAAATTTATCTAAGTTGTAATTATATTTTCATGAAAATTCACAATGACATG-GTTT-TA---
66 TATGAAATTTATCTAGGTTGTAATTATATTTTCATGAAAATTCACATTGATATGATTTTATATTT
*
867433 T-GTTTTTAATTTTTAATTTTTATTTTTTAATTATTTTAAAACTATTTTCGATCAAAATAAAATA
131 TAATTTTTAATTTTTAATTTTTATTTTTTAATTATTTTAAAACTATTTTCGATCAAAATAAAATA
*
867497 TATTTAGTTAAAAATAATATTAATTTCAGTTTAGCTAATTTTAGTAAATTTGCACATATTTAATA
196 TATTTACTTAAAAATAATATTAATTTCAGTTTAGCTAATTTTAGTAAATTTGCACATATTTAATA
*
867562 TTTAGTT
261 TATAGTT
867569 ATGAAATTATCTCTATTTTACTTGATTTTGAGAAAATCCTATTTGTTTATATATAAACTCATTAA
1 ATGAAATTATCTCTATTTTACTTGATTTTGAGAAAATCCTATTTGTTTATATATAAACTCATTAA
*
867634 TATGAAATTTATCTAGGTTGTAATTATATTTTCATGAAAATTCACATTAATATGATTTTATATTT
66 TATGAAATTTATCTAGGTTGTAATTATATTTTCATGAAAATTCACATTGATATGATTTTATA-TT
867699 TTAATTTTTAATTTTTAATTTTTATTCATTTTTAATTATTTTAAAACTATTTTC-AGTCAAAATA
130 TTAATTTTTAATTTTTAATTTTTA-T--TTTTTAATTATTTTAAAACTATTTTCGA-TCAAAATA
* * *
867763 AAATATATTTACTTAAAAATGATATTAATTTCAGTTTTGCTAATTTTAGTGAATTTGCACATATT
191 AAATATATTTACTTAAAAATAATATTAATTTCAGTTTAGCTAATTTTAGTAAATTTGCACATATT
867828 TAATATATAGTT
256 TAATATATAGTT
* * * * *
867840 ATGGAATTATCCCTATTTTACTTGATTTTGAGAAAATCCTATTTCTTTATCTATAAACTTATTAA
1 ATGAAATTATCTCTATTTTACTTGATTTTGAGAAAATCCTATTTGTTTATATATAAACTCATTAA
* * * *
867905 TATGAAATTTATCTGGGTTTTAATTATATTTTCAT-AAAATTCACATTGATGTGATTTTATGCTT
66 TATGAAATTTATCTAGGTTGTAATTATATTTTCATGAAAATTCACATTGATATGATTTTAT-ATT
867969 TTAATTTTTAATTTTTAATTTT
130 TTAATTTTTAATTTTTAATTTT
867991 CAAGTTTACT
Statistics
Matches: 383, Mismatches: 27, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
261 109 0.28
262 3 0.01
263 2 0.01
267 1 0.00
268 20 0.05
269 1 0.00
270 48 0.13
271 199 0.52
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.49
Consensus pattern (267 bp):
ATGAAATTATCTCTATTTTACTTGATTTTGAGAAAATCCTATTTGTTTATATATAAACTCATTAA
TATGAAATTTATCTAGGTTGTAATTATATTTTCATGAAAATTCACATTGATATGATTTTATATTT
TAATTTTTAATTTTTAATTTTTATTTTTTAATTATTTTAAAACTATTTTCGATCAAAATAAAATA
TATTTACTTAAAAATAATATTAATTTCAGTTTAGCTAATTTTAGTAAATTTGCACATATTTAATA
TATAGTT
Found at i:867983 original size:6 final size:7
Alignment explanation
Indices: 867967--868016 Score: 55
Period size: 7 Copynumber: 6.6 Consensus size: 7
867957 GATTTTATGC
867967 TTTTAAT
1 TTTTAAT
867974 TTTTAAT
1 TTTTAAT
867981 TTTTAAT
1 TTTTAAT
*
867988 TTTCAAGT
1 TTTTAA-T
867996 TTACTTAAT
1 TT--TTAAT
868005 TTTTAAT
1 TTTTAAT
868012 GTTTT
1 -TTTT
868017 CTTAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
7 24 0.65
8 7 0.19
9 3 0.08
10 3 0.08
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (7 bp):
TTTTAAT
Found at i:868005 original size:17 final size:18
Alignment explanation
Indices: 867983--868022 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
867973 TTTTTAATTT
867983 TTAATTTTCAA-GTTTAC
1 TTAATTTTCAATGTTTAC
* *
868000 TTAATTTTTAATGTTTTC
1 TTAATTTTCAATGTTTAC
868018 TTAAT
1 TTAAT
868023 ATTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (18 bp):
TTAATTTTCAATGTTTAC
Found at i:868015 original size:18 final size:17
Alignment explanation
Indices: 867969--868028 Score: 63
Period size: 18 Copynumber: 3.6 Consensus size: 17
867959 TTTTATGCTT
867969 TTAATTTTTAA-TTT--
1 TTAATTTTTAAGTTTAC
*
867983 TTAATTTTCAAGTTTAC
1 TTAATTTTTAAGTTTAC
*
868000 TTAATTTTTAATGTTTTC
1 TTAATTTTTAA-GTTTAC
*
868018 TTAATATTTAA
1 TTAATTTTTAA
868029 AAAAAATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
14 10 0.26
15 3 0.08
17 10 0.26
18 15 0.39
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (17 bp):
TTAATTTTTAAGTTTAC
Found at i:870347 original size:36 final size:34
Alignment explanation
Indices: 870288--870356 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 34
870278 TACAATTAAG
*
870288 TTATTTTTAATTCAATAGCATATTAAATATTTAAAT
1 TTATATTTAATTCAATAGCATATT-AAT-TTTAAAT
*
870324 TTATATTTAATTCAATTA-TATATTAATTTTAAA
1 TTATATTTAATTCAA-TAGCATATTAATTTTAAA
870357 ATAAATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 6 0.20
35 3 0.10
36 19 0.63
37 2 0.07
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (34 bp):
TTATATTTAATTCAATAGCATATTAATTTTAAAT
Found at i:870371 original size:14 final size:14
Alignment explanation
Indices: 870352--870391 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
870342 TATATTAATT
870352 TTAAAATAAATTTA
1 TTAAAATAAATTTA
**
870366 TTAAAATATCTTTA
1 TTAAAATAAATTTA
*
870380 TTAAAATTAATT
1 TTAAAATAAATT
870392 ATCATCATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
TTAAAATAAATTTA
Found at i:870669 original size:24 final size:24
Alignment explanation
Indices: 870620--870672 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
870610 AAAAATATAA
** *
870620 TTTTTATTTTTATTTTTTGTCTAT
1 TTTTTATTTTTATTTTTAATCAAT
870644 TTTTTATTTTT-TGTTTTAATCAAT
1 TTTTTATTTTTAT-TTTTAATCAAT
870668 TTTTT
1 TTTTT
870673 TATGATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (24 bp):
TTTTTATTTTTATTTTTAATCAAT
Found at i:870825 original size:16 final size:16
Alignment explanation
Indices: 870804--870834 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
870794 GGATACTTAA
870804 ATTAAAATATAATTTT
1 ATTAAAATATAATTTT
*
870820 ATTAAAATTTAATTT
1 ATTAAAATATAATTT
870835 GATAATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTAAAATATAATTTT
Found at i:873374 original size:2 final size:2
Alignment explanation
Indices: 873324--873354 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
873314 AATGCCAATA
873324 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
873355 CTTATATAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:873943 original size:15 final size:16
Alignment explanation
Indices: 873925--873957 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
873915 TCAATGTAAA
*
873925 TATAAATTTTAAA-AT
1 TATAAATATTAAATAT
873940 TATAAATATTAAATAT
1 TATAAATATTAAATAT
873956 TA
1 TA
873958 AAAAAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAAATATTAAATAT
Found at i:879177 original size:3 final size:3
Alignment explanation
Indices: 879169--879202 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
879159 AAAATGAACC
879169 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
879203 TTCTTTTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:879840 original size:21 final size:19
Alignment explanation
Indices: 879824--879863 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
879814 CATATAATAT
879824 AAAA-TATTTATATTATAAA
1 AAAACTATTTAT-TTATAAA
879843 AAAACTTATTTATTTATAAA
1 AAAAC-TATTTATTTATAAA
879863 A
1 A
879864 TTTTATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 8 0.42
21 7 0.37
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAACTATTTATTTATAAA
Found at i:880264 original size:3 final size:3
Alignment explanation
Indices: 880256--880299 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
880246 GTTTTTAGAT
880256 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
880300 GAAGTGATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:880777 original size:22 final size:21
Alignment explanation
Indices: 880752--880793 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
880742 ATAATAAAAA
880752 ATAT-TTTTAT-ATTAATATTT
1 ATATATTTTATAATTAA-ATTT
880772 ATATATTTTATAATTAAATTT
1 ATATATTTTATAATTAAATTT
880793 A
1 A
880794 AATAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATATTTTATAATTAAATTT
Found at i:880808 original size:23 final size:24
Alignment explanation
Indices: 880746--880810 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
880736 TTATAAATAA
880746 TAAA-AAATATTTTTATATTAATATT
1 TAAATAAAT-TTTTTA-ATTAATATT
* *
880771 T--ATATATTTTATAATTAA-ATT
1 TAAATAAATTTTTTAATTAATATT
880792 TAAATAAATTTTTTAATTA
1 TAAATAAATTTTTTAATTA
880811 TTAAATAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
21 4 0.12
22 5 0.15
23 20 0.61
24 3 0.09
25 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TAAATAAATTTTTTAATTAATATT
Found at i:881047 original size:13 final size:13
Alignment explanation
Indices: 881029--881054 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
881019 TCAACTATGA
881029 GTTTTTTTTTTTT
1 GTTTTTTTTTTTT
881042 GTTTTTTTTTTTT
1 GTTTTTTTTTTTT
881055 CGGAAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
GTTTTTTTTTTTT
Found at i:882501 original size:2 final size:2
Alignment explanation
Indices: 882494--882521 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
882484 AATGCTATGC
882494 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
882522 TAAATAGCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:886046 original size:78 final size:77
Alignment explanation
Indices: 885964--886302 Score: 233
Period size: 78 Copynumber: 4.3 Consensus size: 77
885954 TTCAAGTGTT
* *
885964 TTTTTAT-AGAAAAAAGGGGTTAGAGTATCCATTTTAGAGAGATGGGGTTGAAGTATCTCCGAGA
1 TTTTTATAAGAAAAAAGAGGTTAGAGTATCC-TTTTAGAGAGATAGGGTTGAAGTATC-CCGAGA
*
886028 ATGTAAATTTAAGA
64 ATGTAAATTCAAGA
* * * * * **
886042 TTTTTTTGCAAGAAAAATGAGGTTAG-G-ATACTTTTGGAAAGATAGGGTT-AGAGTATCATTGA
1 TTTTTAT--AAGAAAAAAGAGGTTAGAGTATCCTTTTAGAGAGATAGGGTTGA-AGTATC-CCGA
886104 GAATGTAAATTCAAGA
62 GAATGTAAATTCAAGA
* * * *
886120 TTTTTATATAAGAAAAATA-AGGTTAGAGTATCTCTTTTTTGGGGAGATGGGGTTGGAGTATCCT
1 -TTTT-TATAAGAAAAA-AGAGGTTAGAGTATC-C--TTTTAGAGAGATAGGGTTGAAGTATCC-
** * *
886184 TAAGAATATAAATTCAAAA
59 CGAGAATGTAAATTCAAGA
* * * * * * *
886203 TTTTTGTAAGAGAAAAGAGGTTAGAGTATTCTATTAGAGATATAGGGTTGGAGAATCCCTGAGAA
1 TTTTTATAAGAAAAAAGAGGTTAGAGTATCCTTTTAGAGAGATAGGGTTGAAGTATCCC-GAGAA
* **
886268 TGTTAATTTGAGA
65 TGTAAATTCAAGA
*
886281 TTTTTGTAA-AAAAATA-AGGTTA
1 TTTTTATAAGAAAAA-AGAGGTTA
886303 AAGTGTCCCT
Statistics
Matches: 205, Mismatches: 39, Indels: 35
0.73 0.14 0.13
Matches are distributed among these distances:
77 11 0.05
78 102 0.50
79 8 0.04
80 7 0.03
81 36 0.18
82 4 0.02
83 37 0.18
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (77 bp):
TTTTTATAAGAAAAAAGAGGTTAGAGTATCCTTTTAGAGAGATAGGGTTGAAGTATCCCGAGAAT
GTAAATTCAAGA
Found at i:887424 original size:21 final size:20
Alignment explanation
Indices: 887376--887433 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
887366 CCGTTGGGCC
*
887376 AAATGTATCGATATAATTCA
1 AAATGTATCGATACAATTCA
* *
887396 TAATGTATCGATACAATTTA
1 AAATGTATCGATACAATTCA
887416 AACATGTATCGATACAAT
1 AA-ATGTATCGATACAAT
887434 CACAAGGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (20 bp):
AAATGTATCGATACAATTCA
Found at i:887463 original size:21 final size:22
Alignment explanation
Indices: 887422--887464 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
887412 TTTAAACATG
887422 TATCGATACAATCACAAGGTTA
1 TATCGATACAATCACAAGGTTA
* *
887444 TATCGATATAATC-GAAGGTTA
1 TATCGATACAATCACAAGGTTA
887465 GCTACTGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (22 bp):
TATCGATACAATCACAAGGTTA
Found at i:887688 original size:22 final size:22
Alignment explanation
Indices: 887646--887689 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
887636 CGTATATTTA
**
887646 CTTGAAAAACATTGTTTCTTTG
1 CTTGAAAAACATTGTGACTTTG
887668 CTTGAAAAACATT-TGGACTTTG
1 CTTGAAAAACATTGT-GACTTTG
887690 TCTCTAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (22 bp):
CTTGAAAAACATTGTGACTTTG
Found at i:888261 original size:25 final size:26
Alignment explanation
Indices: 888210--888265 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
888200 ATAAAGTAAT
888210 TTTATACAATTTCTCTAATTTCTCCC
1 TTTATACAATTTCTCTAATTTCTCCC
888236 TTTATAACAA-TTCTCT-ATTTCTCCC
1 TTTAT-ACAATTTCTCTAATTTCTCCC
888261 TTTAT
1 TTTAT
888266 CCCTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 14 0.48
26 11 0.38
27 4 0.14
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.52
Consensus pattern (26 bp):
TTTATACAATTTCTCTAATTTCTCCC
Found at i:888466 original size:14 final size:14
Alignment explanation
Indices: 888443--888472 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
888433 ATTCATAGAA
*
888443 AAATATAAATATTC
1 AAATACAAATATTC
888457 AAATACAAATATTC
1 AAATACAAATATTC
888471 AA
1 AA
888473 GCCAAAAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATACAAATATTC
Found at i:892830 original size:35 final size:34
Alignment explanation
Indices: 892737--892832 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 34
892727 CCTCACAACT
* *
892737 CTATCTTTTCGAAAGATAAGATAGAACCTCTTCC
1 CTATCTTTTCAAAAGCTAAGATAGAACCTCTTCC
** *
892771 CTATCTTTTCACTAGCTAAGATAGAACCTCTTGC
1 CTATCTTTTCAAAAGCTAAGATAGAACCTCTTCC
* * *
892805 TTATCTTTTTTAAAAGCTAAAATAGAAC
1 CTATC-TTTTCAAAAGCTAAGATAGAAC
892833 TTCTCAGTCA
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 33 0.65
35 18 0.35
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.35
Consensus pattern (34 bp):
CTATCTTTTCAAAAGCTAAGATAGAACCTCTTCC
Found at i:893418 original size:33 final size:33
Alignment explanation
Indices: 893375--893437 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
893365 AATTCCTTAG
*
893375 TGTATCGATACAAAGCAATTTGTATCGATACAA
1 TGTATCGATACAAAGCAATTCGTATCGATACAA
* **
893408 TGTATTGATACTTAGCAATTCGTATCGATA
1 TGTATCGATACAAAGCAATTCGTATCGATA
893438 TATCTAAGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAAAGCAATTCGTATCGATACAA
Found at i:895885 original size:55 final size:55
Alignment explanation
Indices: 895728--895888 Score: 160
Period size: 55 Copynumber: 2.9 Consensus size: 55
895718 CTCCAAGTAC
* * * * *
895728 TATGCTTAGCTATTTTCATTTCTATTGCTTCTACCATATAGAGTAATGGTGGCAC
1 TATGCTTAGCTACTTTCATTCCTATTGGTTCTACCATATAGAGTAGTGGTGGCAA
** * * * * * *
895783 TATGCTTATTTGCTTTCATTCTTATTGGTTTTGCCATCTAGATTAGTGGTGGCAA
1 TATGCTTAGCTACTTTCATTCCTATTGGTTCTACCATATAGAGTAGTGGTGGCAA
* * * * *
895838 TATGCTTAGCTACTCTCATTCCTATTGGTTGTACTATGTAAAGTAGTGGTG
1 TATGCTTAGCTACTTTCATTCCTATTGGTTCTACCATATAGAGTAGTGGTG
895889 CAGCAATTCT
Statistics
Matches: 82, Mismatches: 24, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
55 82 1.00
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (55 bp):
TATGCTTAGCTACTTTCATTCCTATTGGTTCTACCATATAGAGTAGTGGTGGCAA
Found at i:896452 original size:21 final size:22
Alignment explanation
Indices: 896428--896468 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
896418 TTAATTTAAC
*
896428 AAAAGGTT-AAATTTGAAGGTT
1 AAAAGATTAAAATTTGAAGGTT
896449 AAAAGATTAAAATTTGAAGG
1 AAAAGATTAAAATTTGAAGG
896469 ACTAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (22 bp):
AAAAGATTAAAATTTGAAGGTT
Found at i:912232 original size:25 final size:26
Alignment explanation
Indices: 912197--912246 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
912187 ATTCAACTAG
*
912197 AATTATAAAATAATTTAAACAAAAAA
1 AATTATAAAATAATTCAAACAAAAAA
* *
912223 AATT-TAAAATTATTCAAACTAAAA
1 AATTATAAAATAATTCAAACAAAAA
912247 TTAAGTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (26 bp):
AATTATAAAATAATTCAAACAAAAAA
Found at i:912287 original size:17 final size:17
Alignment explanation
Indices: 912267--912317 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
912257 ATTTATTTTT
*
912267 TAAAAATATTAATTTAA
1 TAAAAATATAAATTTAA
* *
912284 TAAAAACAATAAATATAA
1 TAAAAA-TATAAATTTAA
*
912302 TATAAATATAAATTTA
1 TAAAAATATAAATTTA
912318 TTGCTTTAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAAATATAAATTTAA
Found at i:912782 original size:19 final size:18
Alignment explanation
Indices: 912758--912798 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
912748 AATATTTAGG
*
912758 TAATAATTTCATTTCTATA
1 TAATAATATCATTTC-ATA
912777 TAATAATATCATTTCATA
1 TAATAATATCATTTCATA
912795 TAAT
1 TAAT
912799 TCATAATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATAATATCATTTCATA
Found at i:923265 original size:20 final size:20
Alignment explanation
Indices: 923240--923277 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
923230 AGAAGCAATG
923240 TATCGATACAATTCATCATA
1 TATCGATACAATTCATCATA
*
923260 TATCGATACAATTTATCA
1 TATCGATACAATTCATCA
923278 ATACAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.37
Consensus pattern (20 bp):
TATCGATACAATTCATCATA
Found at i:923376 original size:19 final size:20
Alignment explanation
Indices: 923332--923385 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
923322 CTGCTAGTTT
* **
923332 CATGTATTGATACAATTGTC
1 CATGTATCGATACAATTGAA
923352 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
*
923371 CATGTATCAATACAA
1 CATGTATCGATACAA
923386 AGCATAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:924000 original size:22 final size:20
Alignment explanation
Indices: 923960--924000 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
923950 CTCTCGTTAT
*
923960 AAAATTTTCCCTTTGATAAA
1 AAAATTTTCCCCTTGATAAA
923980 AAAATTTCTCTCCCTTGATAA
1 AAAATTT-TC-CCCTTGATAA
924001 TTGATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 2 0.11
22 9 0.50
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.39
Consensus pattern (20 bp):
AAAATTTTCCCCTTGATAAA
Found at i:924020 original size:29 final size:30
Alignment explanation
Indices: 923972--924031 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
923962 AATTTTCCCT
923972 TTGATAAAAAAATTTCTCT-CCCTTGATAA
1 TTGATAAAAAAATTTCTCTCCCCTTGATAA
*
924001 TTGATTAAAAAGATTT-TCTCCCCCTTGATAA
1 TTGA-TAAAAAAATTTCTCT-CCCCTTGATAA
924032 AAAATTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 7 0.26
30 10 0.37
31 10 0.37
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.38
Consensus pattern (30 bp):
TTGATAAAAAAATTTCTCTCCCCTTGATAA
Found at i:924026 original size:31 final size:29
Alignment explanation
Indices: 923972--924031 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
923962 AATTTTCCCT
*
923972 TTGATAAAAAAATTTCTCTCCCTTGATAA
1 TTGATAAAAAAATTTCTCCCCCTTGATAA
*
924001 TTGATTAAAAAGATTTTCTCCCCCTTGATAA
1 TTGA-TAAAAA-AATTTCTCCCCCTTGATAA
924032 AAAATTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 4 0.15
30 6 0.22
31 17 0.63
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.38
Consensus pattern (29 bp):
TTGATAAAAAAATTTCTCCCCCTTGATAA
Found at i:925742 original size:21 final size:22
Alignment explanation
Indices: 925703--925745 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
925693 CTGTTTTTGA
* *
925703 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
925725 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
925746 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:930384 original size:3 final size:3
Alignment explanation
Indices: 930376--930418 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
930366 TCCGAGTCAC
* *
930376 CAT CAT CAT CAT TAT CAT CAT CAT CAT CAT CAT CAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
930419 GTCTTTGATG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (3 bp):
CAT
Found at i:932034 original size:33 final size:33
Alignment explanation
Indices: 931992--932057 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
931982 GCCGTTGAAG
931992 CAATTCATCATGCATCGATACAATATATCGATA
1 CAATTCATCATGCATCGATACAATATATCGATA
** * *
932025 CAATTCATCATGTGTTGATACAATGTATCGATA
1 CAATTCATCATGCATCGATACAATATATCGATA
932058 TAAACAGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (33 bp):
CAATTCATCATGCATCGATACAATATATCGATA
Found at i:932133 original size:19 final size:19
Alignment explanation
Indices: 932089--932176 Score: 80
Period size: 19 Copynumber: 4.9 Consensus size: 19
932079 CTGCCAGTTT
* **
932089 CATGTATCGATATAATTGTC
1 CATGTATCGATACAA-TGAA
932109 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
932128 CATGTATTGATAC-----A
1 CATGTATCGATACAATGAA
932142 -ATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
932160 CATGTATTGATACAATG
1 CATGTATCGATACAATG
932177 TATCGATACA
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
13 11 0.20
14 1 0.02
18 1 0.02
19 29 0.52
20 14 0.25
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:932147 original size:13 final size:13
Alignment explanation
Indices: 932129--932187 Score: 51
Period size: 13 Copynumber: 5.1 Consensus size: 13
932119 TACAATGAAC
932129 ATGTATTGATACA
1 ATGTATTGATACA
*
932142 ATGTATCGATAC-
1 ATGTATTGATACA
932154 A---A-TGA-AC-
1 ATGTATTGATACA
932161 ATGTATTGATACA
1 ATGTATTGATACA
*
932174 ATGTATCGATACA
1 ATGTATTGATACA
932187 A
1 A
932188 AGCATAATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
7 3 0.08
8 2 0.05
9 1 0.03
10 1 0.03
11 3 0.08
12 3 0.08
13 24 0.65
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:932151 original size:32 final size:32
Alignment explanation
Indices: 932110--932187 Score: 156
Period size: 32 Copynumber: 2.4 Consensus size: 32
932100 ATAATTGTCC
932110 ATGTATCGATACAATGAACATGTATTGATACA
1 ATGTATCGATACAATGAACATGTATTGATACA
932142 ATGTATCGATACAATGAACATGTATTGATACA
1 ATGTATCGATACAATGAACATGTATTGATACA
932174 ATGTATCGATACAA
1 ATGTATCGATACAA
932188 AGCATAATGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (32 bp):
ATGTATCGATACAATGAACATGTATTGATACA
Found at i:932687 original size:21 final size:21
Alignment explanation
Indices: 932663--932714 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
932653 ATATATATAT
* * *
932663 TTATAGTTTTCATTGAAATTA
1 TTATAATTTTAATTAAAATTA
* *
932684 TTATATTTTTAATTAAAATTG
1 TTATAATTTTAATTAAAATTA
932705 TTATAATTTT
1 TTATAATTTT
932715 TATTTATAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.58
Consensus pattern (21 bp):
TTATAATTTTAATTAAAATTA
Found at i:932822 original size:22 final size:23
Alignment explanation
Indices: 932754--932827 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 23
932744 CTAATTTGTG
*
932754 GTTATATA-ATACATTTAATGTTT
1 GTTATATATATAGA-TTAATGTTT
* *
932777 GTATATATATTTAGGATTAGTGTTT
1 GT-TATATATATA-GATTAATGTTT
*
932802 GTTTTATATATA-ATTAATGTTT
1 GTTATATATATAGATTAATGTTT
932824 GTTA
1 GTTA
932828 ATCCTTATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
22 12 0.29
23 2 0.05
24 14 0.34
25 12 0.29
26 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (23 bp):
GTTATATATATAGATTAATGTTT
Found at i:936331 original size:11 final size:11
Alignment explanation
Indices: 936308--936340 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
936298 TTACTTCATG
936308 TAAATAA-TAT
1 TAAATAATTAT
936318 TAAATAATTAT
1 TAAATAATTAT
936329 TAAATAATTAT
1 TAAATAATTAT
936340 T
1 T
936341 TAATTTACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TAAATAATTAT
Found at i:940065 original size:21 final size:21
Alignment explanation
Indices: 940039--940091 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
940029 TTTTAGAATT
*
940039 TGTATCGATACAGCAAGTTAA
1 TGTATCGATACAGCAAGTGAA
* *
940060 TGTATCCATAC-GTAAGTGAA
1 TGTATCGATACAGCAAGTGAA
*
940080 TATATCGATACA
1 TGTATCGATACA
940092 TGCTTGCAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACAGCAAGTGAA
Found at i:941753 original size:21 final size:20
Alignment explanation
Indices: 941707--941758 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
941697 TACATGTAAA
* *
941707 AATGTATCAATACATTATGT
1 AATGTATCGATACATCATGT
941727 AATGTATCGATACATCATGT
1 AATGTATCGATACATCATGT
941747 GAATGTATCGAT
1 -AATGTATCGAT
941759 GCATTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (20 bp):
AATGTATCGATACATCATGT
Found at i:945789 original size:18 final size:20
Alignment explanation
Indices: 945757--945796 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
945747 TTAAATATAA
*
945757 TTAATTTATCAAATAATTAT
1 TTAATTTATCAAATAAATAT
945777 TTAATTTA-C-AATAAATAT
1 TTAATTTATCAAATAAATAT
945795 TT
1 TT
945797 TTTGGCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 1 0.05
20 8 0.42
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAATTTATCAAATAAATAT
Found at i:948996 original size:157 final size:154
Alignment explanation
Indices: 948748--949150 Score: 384
Period size: 157 Copynumber: 2.6 Consensus size: 154
948738 AAGGTGCGCA
* * ** *
948748 TTTAGGATAGGTTCA-TCATTTTAATTTCATTTTTGTG-CCTTTTCGGGTTACTTGGATACTTTC
1 TTTAGGATAGGTTCACTC-TTCTAACTTCATTTTTGTGTCC-TTTAAGGTTACAT-GATACTTTC
* * * * * *
948811 ATGTTGAAGGTATACTTTAGAGGCATTTTGATAATTTCTCTAGAGCTAAGTCTTAGGTGGTCATC
63 ATGTTAAAGGTATACCTTAGAGGCATTTTGATAATTTCTATAGAACTAAGTCTTAGGTAGCCATC
* *
948876 GGGTCACTTTTATGCCAAAGGTATGTG
128 AGGTCACTTTTATGCCAAAGGTATATG
948903 TTTAGGATAGGTTCACTCTTCTAACTTCATATTTTCGTGTCCTTTAAGGTTATC-TGCATACTTT
1 TTTAGGATAGGTTCACTCTTCTAACTTCAT-TTTT-GTGTCCTTTAAGGTTA-CATG-ATACTTT
* * * * * * * *
948967 CACGTCAAAGGTATACCTTAGAGGTATTTTGGTAATTTTTATAGAATTGAGTTTTAGGTAGCCAT
62 CATGTTAAAGGTATACCTTAGAGGCATTTTGATAATTTCTATAGAACTAAGTCTTAGGTAGCCAT
** ** *
949032 CAGGTCGTTTTTATGCCATTGGTGTATG
127 CAGGTCACTTTTATGCCAAAGGTATATG
* * ** * *
949060 TTTGGGATAGCTTCAC-CTTCTTAGGTTCATTTTTGAGTCCTTTAAGGTTAACAAGATACTTTCA
1 TTTAGGATAGGTTCACTCTTC-TAACTTCATTTTTGTGTCCTTTAAGGTT-ACATGATACTTTCA
*
949124 TGTTAAACGTATACCTTA-AGAGCATTT
64 TGTTAAAGGTATACCTTAGAG-GCATTT
949151 CAGTAATTTT
Statistics
Matches: 203, Mismatches: 35, Indels: 20
0.79 0.14 0.08
Matches are distributed among these distances:
154 2 0.01
155 69 0.34
156 17 0.08
157 112 0.55
158 3 0.01
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (154 bp):
TTTAGGATAGGTTCACTCTTCTAACTTCATTTTTGTGTCCTTTAAGGTTACATGATACTTTCATG
TTAAAGGTATACCTTAGAGGCATTTTGATAATTTCTATAGAACTAAGTCTTAGGTAGCCATCAGG
TCACTTTTATGCCAAAGGTATATG
Found at i:952177 original size:9 final size:9
Alignment explanation
Indices: 952150--952183 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
952140 GGATTTTCAC
952150 AAAAAAAAG
1 AAAAAAAAG
* *
952159 AAGAATAAG
1 AAAAAAAAG
952168 AAAAAAAAG
1 AAAAAAAAG
952177 AAAAAAA
1 AAAAAAA
952184 TTCAGATACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:953569 original size:20 final size:20
Alignment explanation
Indices: 953544--953602 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
953534 ATTGACAATT
953544 AGTGAATATATCGATACATA
1 AGTGAATATATCGATACATA
* *
953564 AGTGAATGTATCGATGCATA
1 AGTGAATATATCGATACATA
**
953584 TCTGAAATATATCGATACA
1 AGTG-AATATATCGATACA
953603 AGACCATGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 20 0.62
21 12 0.38
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.31
Consensus pattern (20 bp):
AGTGAATATATCGATACATA
Found at i:953706 original size:51 final size:52
Alignment explanation
Indices: 953638--953778 Score: 203
Period size: 52 Copynumber: 2.7 Consensus size: 52
953628 TCTGGAAGGA
953638 AAATGTATCGATACATTCTTCATTGTATCGATACATTATAGG-TTTTGACCC
1 AAATGTATCGATACATTCTTCATTGTATCGATACATTATAGGTTTTTGACCC
* * * * * *
953689 AAATGTATTGATGCATTCTTCATTTTATCGATACATTTTGGGTTTTTGGCCC
1 AAATGTATCGATACATTCTTCATTGTATCGATACATTATAGGTTTTTGACCC
* *
953741 AAATGTATCGATACATTCTTCAATGTATCGATATATTA
1 AAATGTATCGATACATTCTTCATTGTATCGATACATTA
953779 CATGTAGGCA
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
51 37 0.48
52 40 0.52
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (52 bp):
AAATGTATCGATACATTCTTCATTGTATCGATACATTATAGGTTTTTGACCC
Found at i:957012 original size:13 final size:13
Alignment explanation
Indices: 956994--957018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
956984 ACATTTTACC
956994 ATGTATCGATACA
1 ATGTATCGATACA
957007 ATGTATCGATAC
1 ATGTATCGATAC
957019 TGAGTAAGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:957088 original size:33 final size:33
Alignment explanation
Indices: 957046--957109 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
957036 TGCCGGTTTC
* *
957046 ATGTATCGATA-TAATTCAATGTGTATCGATATA
1 ATGTATCGATACTAA-GCAATATGTATCGATATA
957079 ATGTATCGATACTAAGCAATATGTATCGATA
1 ATGTATCGATACTAAGCAATATGTATCGATA
957110 CATCTGGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.89
34 3 0.11
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACTAAGCAATATGTATCGATATA
Found at i:968186 original size:20 final size:21
Alignment explanation
Indices: 968140--968197 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
968130 ATTTACCTGC
968140 ATGTATCGATACAATTTGAAGA
1 ATGTATCGATAC-ATTTGAAGA
**
968162 ATGTATCGATACATTT-ATTA
1 ATGTATCGATACATTTGAAGA
*
968182 ATGTATTGATACATTT
1 ATGTATCGATACATTT
968198 CCTTAGCAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 17 0.52
21 4 0.12
22 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATTTGAAGA
Found at i:969210 original size:176 final size:175
Alignment explanation
Indices: 968899--969265 Score: 646
Period size: 176 Copynumber: 2.1 Consensus size: 175
968889 ATATGACAAC
*
968899 ATGCAGATTCAAGGCCTGCAACACTGGACTTAAAGATGATAAAGAAGAAAAAAAATGATAGAAGT
1 ATGCTGATTCAAGGCCTGCAACACTGGACTTAAAGATGATAAAGAAGAAAAAAAATGATAGAAGT
* *
968964 GCCAAAATGCTTATTCGAGGCCCGCGATGCTGGGTTTAAAGATAACAAAGGTGCCAATGTCCTGA
66 GCCAAAATGCTTATTCGAGGCCCGCGATGCTGGGTTTAAAGATAACAAAAGTGCCAATGTCCTAA
*
969029 TTCAAGGCCAATGACATTGGACTCAAAGATGAGAAAGGCGTCAAT
131 TTCAAGGCCAATGACATTGGACTCAAAGATGAGAAAGGCGCCAAT
*
969074 ATGCTGATTCGAGGCCTGCAACACTGGACTTAAAGATGATAAAGAAGAAAAAAAAATGATAGAAG
1 ATGCTGATTCAAGGCCTGCAACACTGGACTTAAAGATGATAAAGAAG-AAAAAAAATGATAGAAG
*
969139 TGCCAAAATG-TTGATTCGAGGCCCGCGATGCTGGGTTTAAAGATGACAAAAGTGCCAATGTCCT
65 TGCCAAAATGCTT-ATTCGAGGCCCGCGATGCTGGGTTTAAAGATAACAAAAGTGCCAATGTCCT
*
969203 AATTCAAGGCCAATGACATTGGACTCAAAGATGAGAAAGGTGCCAAT
129 AATTCAAGGCCAATGACATTGGACTCAAAGATGAGAAAGGCGCCAAT
969250 ATGCTGATTCAAGGCC
1 ATGCTGATTCAAGGCC
969266 AACGATATTG
Statistics
Matches: 182, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
175 47 0.26
176 135 0.74
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (175 bp):
ATGCTGATTCAAGGCCTGCAACACTGGACTTAAAGATGATAAAGAAGAAAAAAAATGATAGAAGT
GCCAAAATGCTTATTCGAGGCCCGCGATGCTGGGTTTAAAGATAACAAAAGTGCCAATGTCCTAA
TTCAAGGCCAATGACATTGGACTCAAAGATGAGAAAGGCGCCAAT
Found at i:969233 original size:52 final size:52
Alignment explanation
Indices: 969177--969340 Score: 150
Period size: 52 Copynumber: 3.2 Consensus size: 52
969167 TGCTGGGTTT
* *
969177 AAAGATGACAAAAGTGCCAATGTCCTAATTCAAGGCCAATGACATTGGACTC
1 AAAGATGACAAAAGTGCCAATATCCTAATTCAAGGCCAACGACATTGGACTC
* * * * *
969229 AAAGATGAGAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACT-
1 AAAGATGACAAAAGTGCCAATATCCTAATTCAAGGCCAACGACATTGGACTC
* ** * * * ** * *
969280 TAAGAAAAAAAAAGGTGCCAATATGCTGATTCAAGGCCGGCGATATTGGACTT
1 AAAGATGACAAAA-GTGCCAATATCCTAATTCAAGGCCAACGACATTGGACTC
*
969333 AAAAATGA
1 AAAGATGA
969341 GAAGAATAAA
Statistics
Matches: 92, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
51 8 0.09
52 80 0.87
53 4 0.04
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (52 bp):
AAAGATGACAAAAGTGCCAATATCCTAATTCAAGGCCAACGACATTGGACTC
Found at i:969384 original size:61 final size:61
Alignment explanation
Indices: 969281--969401 Score: 181
Period size: 61 Copynumber: 2.0 Consensus size: 61
969271 TATTGGACTT
* *
969281 AAGAAAAAAAAAGGTGCCAATATGCTGATTCAAGGCCGGCGATATTG-GACTTAAAAATGAG
1 AAGAAAAAAAAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGAG-CTTAAAAATGAG
* * *
969342 AAGAATAAAAAAGGTGCTAATATGCTGATTCAAGACCAGCGATATTGAGCTTAAAGATGA
1 AAGAAAAAAAAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGAGCTTAAAAATGA
969402 CAAAGGTGCC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 53 0.98
62 1 0.02
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.21
Consensus pattern (61 bp):
AAGAAAAAAAAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGAGCTTAAAAATGAG
Found at i:969441 original size:113 final size:113
Alignment explanation
Indices: 969238--969442 Score: 261
Period size: 113 Copynumber: 1.8 Consensus size: 113
969228 CAAAGATGAG
*
969238 AAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAGAAAAAAAAAGGTGCCAATA
1 AAAGGTGCCAATATGCTGATTCAAGACCAACGATATTGGACTTAAGAAAAAAAAAGGTGCCAATA
** *
969303 TGCTGATTCAAGGCCGGCGATATTGGACTTAAAAATGAGAAGAATAAA
66 TGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGAGAAGAATAAA
* * ** *
969351 AAAGGTGCTAATATGCTGATTCAAGACCAGCGATATT-GAGCTTAA-AGATGACAAAGGTGCCAA
1 AAAGGTGCCAATATGCTGATTCAAGACCAACGATATTGGA-CTTAAGA-AAAAAAAAGGTGCCAA
* ** *
969414 TGTGCTGATTCAAGGTTAACGGCATTGGA
64 TATGCTGATTCAAGGCCAACGACATTGGA
969443 TTTGAAGAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
112 3 0.04
113 74 0.96
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (113 bp):
AAAGGTGCCAATATGCTGATTCAAGACCAACGATATTGGACTTAAGAAAAAAAAAGGTGCCAATA
TGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGAGAAGAATAAA
Found at i:969613 original size:32 final size:32
Alignment explanation
Indices: 969514--969630 Score: 132
Period size: 32 Copynumber: 3.7 Consensus size: 32
969504 TAGATACCAT
* *
969514 CGACTTTTGTGGGCTTTTG-AGAGGGTTGCC-C
1 CGACTTGTGTGGGCTTTAGAAGA-GGTTGCCAC
* * * *
969545 CTGACCTGTATGGGCTTGAGAAGA-GTTGCCAT
1 C-GACTTGTGTGGGCTTTAGAAGAGGTTGCCAC
969577 CGACTTGTGTGGGCTTTAGAAGAGGTTGCCAC
1 CGACTTGTGTGGGCTTTAGAAGAGGTTGCCAC
*
969609 CGACTTGTGTGGGCTTTGGAAG
1 CGACTTGTGTGGGCTTTAGAAG
969631 GAGAAGATGC
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
31 26 0.37
32 42 0.59
33 3 0.04
ACGTcount: A:0.16, C:0.18, G:0.35, T:0.31
Consensus pattern (32 bp):
CGACTTGTGTGGGCTTTAGAAGAGGTTGCCAC
Found at i:969652 original size:35 final size:34
Alignment explanation
Indices: 969562--969652 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 34
969552 GTATGGGCTT
969562 GAGAAGAGTTGCCATCGACTTGTGTGGGCTTTAGAA
1 GAGAAGA--TGCCATCGACTTGTGTGGGCTTTAGAA
* * *
969598 GAG--GTTGCCACCGACTTGTGTGGGCTTTGGAA
1 GAGAAGATGCCATCGACTTGTGTGGGCTTTAGAA
* *
969630 GGAGAAGATGCCATAGAGTTGTG
1 -GAGAAGATGCCATCGACTTGTG
969653 GACTTAAAAG
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
32 25 0.56
33 3 0.07
34 1 0.02
35 13 0.29
36 3 0.07
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.26
Consensus pattern (34 bp):
GAGAAGATGCCATCGACTTGTGTGGGCTTTAGAA
Found at i:971189 original size:7 final size:7
Alignment explanation
Indices: 971177--971232 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
971167 TCGGACCCTT
971177 TTTTTTG
1 TTTTTTG
971184 TTTTTT-
1 TTTTTTG
971190 TTGTTTTG
1 TT-TTTTG
*
971198 ATTTTTG
1 TTTTTTG
*
971205 GTTTTTG
1 TTTTTTG
971212 TTTTTACT-
1 TTTTT--TG
971220 TTTTTTG
1 TTTTTTG
971227 TTTTTT
1 TTTTTT
971233 ACGTAAGACG
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
6 3 0.07
7 31 0.76
8 6 0.15
9 1 0.02
ACGTcount: A:0.04, C:0.02, G:0.12, T:0.82
Consensus pattern (7 bp):
TTTTTTG
Found at i:980375 original size:62 final size:62
Alignment explanation
Indices: 980262--980381 Score: 188
Period size: 62 Copynumber: 1.9 Consensus size: 62
980252 CATGCATTTT
* *
980262 TGAGACATAATTAGGTTTTAAGATGTCCCCATCCTGGCGTTGACGATCTTCTAACCATGTTC
1 TGAGACATAATTAGGTTTTAAGATGTCCCCATCCTGGCGTAGACGACCTTCTAACCATGTTC
* *
980324 TGAGACATAATTAGGTTTTAAGATGTCCCCATCCTGGTGTCAG-CGGCCTTCTAACCAT
1 TGAGACATAATTAGGTTTTAAGATGTCCCCATCCTGGCGT-AGACGACCTTCTAACCAT
980382 CTTGACCTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 52 0.98
63 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (62 bp):
TGAGACATAATTAGGTTTTAAGATGTCCCCATCCTGGCGTAGACGACCTTCTAACCATGTTC
Found at i:981284 original size:14 final size:14
Alignment explanation
Indices: 981247--981284 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
981237 AGGTCCATTG
*
981247 CGGGTTTGACGAAT
1 CGGGTTTGATGAAT
981261 CGGGTTTGATGAAT
1 CGGGTTTGATGAAT
981275 CGGGTTTGAT
1 CGGGTTTGAT
981285 CCGGTGGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.18, C:0.11, G:0.37, T:0.34
Consensus pattern (14 bp):
CGGGTTTGATGAAT
Found at i:983885 original size:508 final size:506
Alignment explanation
Indices: 982927--983914 Score: 1331
Period size: 508 Copynumber: 1.9 Consensus size: 506
982917 CATCACGCTG
** *
982927 TCCCACTTCTTGAATTTATTTCGGGTTGATTTGATGGATTTACAAGGTGGACAAGGCACCGTTGG
1 TCCCACTTCTCAAATTTATTTCAGGTTGATTTGATGGATTTACAAGGTGGACAAGGCACCGTTGG
* * *
982992 ATAGGTAACTCGATAGGGTTAATCTAAAAATATTCCATAAATCCAAAAAAAATAGTTTACTAGAA
66 ACAGGTAACTCGATAAGGTTAATCTAAAAATATTCCAAAAATCCAAAAAAAATAGTTTACTAGAA
* * * *
983057 GGAAAAATTTCTCAAATTTGGGTGAATTGCATCGCTGGCAGAGCACATGAAGGAAAATGTGCGTC
131 GGAAAAAATTCTCAAAGTTGGATGAATTGCATCGCTGGCAGAGCACATGAAGGAAAAGGTGCGTC
* * * *
983122 AAACTTTGAAAAATCACCCCGGATTCATTTGGTATTGAAAAAACACAAATGATACATTTCCAAAA
196 AAACTTTAAAAAATCACCCCGGACTCATTTGGTATCGAAAAAACACAAACGATACATTTCCAAAA
* * **
983187 AGGGAATTTAATGAGTTTTTAGGAAAAATGTTCAAAACATTTGTAAAAATCGTCTAATGGGCCTG
261 AGGAAATTTAATGAGTTTTTAGGAAAAACGTTCAAAACATTTACAAAAATCGTCTAATGGGCCTG
* * * * * *
983252 TATAGCCTAACCAGAATGCATTTAGCTGATTCTAGGAATTTTAGACAGCTTAGATTTGAAAATTT
326 CATAGCCCAACCAGAATGCATTTAGCTGATTCTAAGAATTCTAGACAGCTTAGATTCGAAAAATT
* * * * *
983317 ATAACTCCCACATCCGGATAAATCTGAAGGCAAATAAGATACCGTTGGAAAGATATTTTGACACC
391 ATAACTCCCACATCCAGACAAATCCGAAGGCAAATAAGACACCGTTAGAAAGATATTTTGACACC
*
983382 CTTTAAGAGAAAAATATTAAAAAAAACTAAAAAATCGTTAGCATCGTGCCA
456 CTTTAAGAGAAAAATACTAAAAAAAACTAAAAAATCGTTAGCATCGTGCCA
* * * *
983433 TCCCACTTCTCAAATTTATTTTAGGTTGATTTGATGGATTTAGAAGGTGGACAAGGTACTGTTGG
1 TCCCACTTCTCAAATTTATTTCAGGTTGATTTGATGGATTTACAAGGTGGACAAGGCACCGTTGG
** *
983498 ACAGGTAACTCGATGAAGGTTAATCTAAAAATATTTTAAAAATCCCAAAAAAATCA-TTTACTAG
66 ACAGGTAACTCGAT-AAGGTTAATCTAAAAATATTCCAAAAATCCAAAAAAAAT-AGTTTACTAG
* *
983562 GA-GAAATAAATTCAT-AAAGTTGGATGAATTGCA-CTG-TAGGCAGAGCATATGAAGGAAAAGG
129 AAGGAAA-AAATTC-TCAAAGTTGGATGAATTGCATC-GCT-GGCAGAGCACATGAAGGAAAAGG
* * *
983623 TGCGTCAAACTTTAAAAAATCAGCCCGGACTCATTTGGTATCGAAAAATCACAAACGATACCTTT
190 TGCGTCAAACTTTAAAAAATCACCCCGGACTCATTTGGTATCGAAAAAACACAAACGATACATTT
* * * *
983688 -CAGAAAAGGAAATTTCATGAGCTTTTTAGGAAAAACGTTCAGAACATTTACAAAAATTGTCTAG
255 CCA-AAAAGGAAATTTAATGAG-TTTTTAGGAAAAACGTTCAAAACATTTACAAAAATCGTCTAA
* * *
983752 TGGGCCTGCATAGCCCAACTAGAATGCATTTAGCTGATTTTAAGAGTTCTAGACAGCTTAGATTC
318 TGGGCCTGCATAGCCCAACCAGAATGCATTTAGCTGATTCTAAGAATTCTAGACAGCTTAGATTC
* * ** * **
983817 GAAAAATTGTAACTCTCATGTCCAGACAGATCCGGGGGCAAATAAGACACCGTTAGAAAGATATT
383 GAAAAATTATAACTCCCACATCCAGACAAATCCGAAGGCAAATAAGACACCGTTAGAAAGATATT
* * *
983882 TTGACACGCTTTAAGGGAGAAATACTAAAAAAA
448 TTGACACCCTTTAAGAGAAAAATACTAAAAAAA
983915 TTAGCAAATC
Statistics
Matches: 415, Mismatches: 59, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
506 79 0.19
507 160 0.39
508 176 0.42
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (506 bp):
TCCCACTTCTCAAATTTATTTCAGGTTGATTTGATGGATTTACAAGGTGGACAAGGCACCGTTGG
ACAGGTAACTCGATAAGGTTAATCTAAAAATATTCCAAAAATCCAAAAAAAATAGTTTACTAGAA
GGAAAAAATTCTCAAAGTTGGATGAATTGCATCGCTGGCAGAGCACATGAAGGAAAAGGTGCGTC
AAACTTTAAAAAATCACCCCGGACTCATTTGGTATCGAAAAAACACAAACGATACATTTCCAAAA
AGGAAATTTAATGAGTTTTTAGGAAAAACGTTCAAAACATTTACAAAAATCGTCTAATGGGCCTG
CATAGCCCAACCAGAATGCATTTAGCTGATTCTAAGAATTCTAGACAGCTTAGATTCGAAAAATT
ATAACTCCCACATCCAGACAAATCCGAAGGCAAATAAGACACCGTTAGAAAGATATTTTGACACC
CTTTAAGAGAAAAATACTAAAAAAAACTAAAAAATCGTTAGCATCGTGCCA
Done.