Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1620
Parameters: 2 7 7 80 10 50 1000
Length:  27153

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1656--1713
30
1.9
30
82
6
73
58
3
1
36
1.25
3899--3956
18
3.2
18
73
9
55
53
0
0
46
1.00
3885--3965
26
3.3
23
77
11
72
56
0
0
43
0.99
3906--3981
18
4.2
18
75
15
59
60
0
0
39
0.97
3874--3990
23
5.0
23
70
19
64
59
0
0
40
0.97
3881--3987
17
6.1
18
66
19
57
59
0
0
40
0.97
5795--5924
15
8.3
15
69
18
72
60
1
0
38
1.07
6111--6165
16
3.5
16
80
2
67
52
3
0
43
1.18
6212--6278
28
2.4
28
80
5
82
43
0
2
53
1.16
6188--6277
27
3.1
28
71
16
76
43
1
2
53
1.20
6556--6581
1
26.0
1
100
0
52
0
100
0
0
0.00
11643--11694
2
26.5
2
92
3
88
48
0
1
50
1.12
14046--14119
27
2.8
25
68
11
67
45
0
0
54
1.00
14938--14969
2
17.0
2
87
12
50
50
0
0
50
1.00
17953--17998
24
1.9
23
83
16
58
43
2
4
50
1.34
18527--18566
16
2.4
17
87
8
55
50
2
0
47
1.14
20201--20228
6
4.7
6
100
0
56
14
32
35
17
1.90
21952--21979
2
14.0
2
100
0
56
50
0
0
50
1.00
24868--24916
25
2.0
23
84
7
62
51
14
8
26
1.70

Tables:   1

The End!