genome.fa.s1622.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1622
Parameters: 2 7 7 80 10 50 1000
Length:  78957

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2331--2396	22	3.2	21	71	20	68	36	3	31	28	1.73
2977--3031	20	2.7	21	77	11	60	34	14	18	32	1.91
5057--5086	15	2.0	15	100	0	60	33	13	20	33	1.91
5196--5601	34	11.9	34	71	8	225	30	13	15	40	1.85
5708--5810	53	1.9	53	84	3	136	27	23	13	35	1.92
7359--7414	9	6.6	9	82	12	64	0	17	0	82	0.68
7356--7412	16	3.5	16	85	4	78	0	19	0	80	0.71
7359--7414	8	6.8	8	78	8	58	0	17	0	82	0.68
7375--7415	9	4.7	9	90	6	66	0	12	0	87	0.53
7359--7414	17	3.3	17	87	0	76	0	17	0	82	0.68
9185--9239	27	2.1	26	83	10	67	10	23	0	65	1.24
21193--21317	52	2.4	52	93	0	205	27	18	17	36	1.93
21193--21337	52	2.8	52	86	4	177	28	17	17	35	1.94
21326--21350	13	1.9	13	100	0	50	36	16	16	32	1.90
21415--21439	13	1.9	13	100	0	50	32	16	16	36	1.90
22463--22535	22	3.1	22	64	21	58	31	19	26	23	1.98
22354--22961	49	12.7	49	84	7	804	30	17	25	25	1.97
22288--22961	92	7.0	98	87	5	819	31	17	25	25	1.97
22961--23081	33	3.7	33	91	4	201	19	19	33	27	1.96
22954--23081	65	2.0	63	92	6	213	18	18	34	28	1.95
23067--23306	27	7.6	34	71	19	107	29	15	33	21	1.94
23079--23160	35	2.4	33	80	8	94	35	12	32	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23128--23366	27	8.2	27	72	18	167	27	14	36	21	1.92
23067--23425	34	11.6	32	69	19	178	28	15	34	21	1.94
23099--23273	89	2.0	89	85	6	239	27	15	35	21	1.94
23161--23325	62	2.7	60	87	7	228	25	14	36	23	1.93
23092--23425	152	2.2	149	85	7	431	28	14	35	21	1.93
23222--23394	90	2.0	87	86	7	242	26	14	35	23	1.93
23406--23525	63	1.9	62	86	5	170	29	17	30	23	1.97
23308--23526	31	6.9	31	76	12	185	28	15	34	21	1.94
23341--23520	94	1.9	96	86	6	260	27	17	32	22	1.96
32941--32970	11	2.7	11	94	0	51	73	26	0	0	0.84
34220--35200	28	34.5	28	83	3	1129	29	30	16	23	1.97
34220--35200	57	17.2	57	86	2	1217	29	30	16	23	1.97
34220--35218	85	11.7	84	83	5	1170	29	29	17	23	1.97
36103--36153	20	2.5	20	83	0	66	33	11	13	41	1.81
42492--42607	58	2.0	58	85	9	157	31	12	11	45	1.76
42919--42945	13	2.1	13	100	0	54	29	14	14	40	1.86
44569--44603	15	2.3	15	90	0	52	45	0	25	28	1.54
47712--47742	16	1.9	16	93	0	53	54	0	9	35	1.33
49196--49235	13	3.1	13	92	0	71	32	15	15	37	1.88
51702--51728	13	2.1	13	100	0	54	29	14	14	40	1.86
62124--62183	21	2.9	21	82	5	59	33	23	5	38	1.76
65579--65659	37	2.2	38	80	10	87	37	18	17	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69071--69128	21	2.8	21	84	7	66	39	5	24	31	1.77

Tables:   1

The End!