genome.fa.s1623.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1623
Parameters: 2 7 7 80 10 50 1000
Length:  93724

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128--1169	22	1.9	22	90	9	68	61	0	0	38	0.96
1785--1845	29	2.1	29	82	11	72	50	1	0	47	1.10
1828--1876	25	2.0	25	84	8	64	55	2	2	40	1.23
2108--2168	17	3.6	18	84	10	58	72	0	0	27	0.85
2111--2170	22	2.7	22	85	10	61	71	0	0	28	0.86
2107--2168	12	5.4	12	74	18	53	72	0	0	27	0.85
2602--2669	17	3.9	18	73	26	67	52	2	0	44	1.16
2592--2660	32	2.1	33	89	2	104	52	2	0	44	1.16
2675--2716	21	2.0	21	86	9	59	64	0	0	35	0.94
2649--2720	16	4.6	16	69	19	53	59	0	0	40	0.97
5610--5729	5	24.0	5	84	0	123	47	10	19	22	1.80
5611--5732	15	8.1	15	88	0	145	49	9	18	22	1.77
5610--5732	20	6.7	20	78	17	140	48	10	18	21	1.78
5757--5791	15	2.4	15	95	4	63	57	5	20	17	1.60
6241--6273	15	2.3	15	89	5	50	63	9	24	3	1.38
6404--7310	42	21.6	42	90	0	1267	38	19	32	9	1.84
9359--9430	28	2.6	28	88	0	99	23	19	34	22	1.96
9418--9640	52	4.3	51	80	6	223	32	11	25	30	1.91
9655--9719	17	3.8	17	78	8	78	16	26	32	24	1.96
12029--12083	20	2.8	20	82	0	74	45	16	14	23	1.84
12103--12172	19	4.1	18	75	22	78	35	15	11	37	1.84
12125--12149	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12106--12168	32	2.0	32	93	0	108	34	15	12	36	1.86
23969--23999	16	2.0	15	93	6	53	19	0	3	77	0.90
25330--25424	5	19.0	5	87	0	100	49	10	18	21	1.77
25330--25427	20	4.9	20	88	0	142	51	10	18	20	1.75
25452--25486	15	2.4	15	95	4	63	57	5	20	17	1.60
25547--25622	39	1.9	39	84	5	100	28	1	1	68	1.06
25555--25619	19	3.4	19	74	4	58	29	0	1	69	0.98
27836--27866	2	15.5	2	93	0	53	48	3	0	48	1.17
27982--28011	2	15.0	2	92	0	51	53	0	0	46	1.00
29866--29905	2	20.0	2	100	0	80	50	0	0	50	1.00
30986--31023	11	3.1	12	85	14	51	55	0	0	44	0.99
31007--31049	17	2.5	18	81	11	54	67	0	0	32	0.91
31564--31662	36	2.8	36	72	15	98	52	0	0	47	1.00
39145--39173	2	14.5	2	100	0	58	51	0	48	0	1.00
39680--39727	26	2.0	23	84	12	60	33	0	2	64	1.05
39981--40018	11	3.2	12	85	11	51	68	0	0	31	0.90
39972--40033	29	2.2	28	85	2	79	62	1	0	35	1.05
39972--40019	18	2.5	18	78	21	53	66	2	0	31	1.03
40653--40707	13	4.0	14	75	15	53	61	0	0	38	0.96
40866--40913	18	2.4	20	86	13	64	47	0	0	52	1.00
40878--40918	22	1.9	22	90	5	66	41	0	0	58	0.98
40866--40918	22	2.7	20	85	11	65	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41729--41781	16	3.4	16	82	7	65	50	16	11	20	1.76
43171--43202	16	2.0	16	93	0	55	65	0	0	34	0.93
43979--44009	2	15.5	2	100	0	62	51	0	48	0	1.00
45219--45258	16	2.5	16	91	0	62	60	12	2	25	1.45
46275--46316	12	3.2	13	83	6	50	71	0	26	2	0.98
46604--49567	449	6.6	450	88	2	4173	39	14	11	34	1.81
46592--49567	896	3.3	895	87	3	4229	39	14	11	34	1.82
55504--55553	24	2.1	24	92	0	82	52	10	6	32	1.59
55822--55855	17	2.0	17	100	0	68	58	17	11	11	1.62
56169--56199	16	1.9	16	93	0	53	51	12	6	29	1.65
59326--59374	15	3.2	15	82	2	53	18	4	28	48	1.66
59619--59704	45	1.9	45	83	4	111	54	0	1	44	1.07
59657--59695	19	2.1	18	85	4	51	53	0	0	46	1.00
61518--61562	14	3.4	14	78	12	58	66	0	0	33	0.92
62155--62206	5	10.6	5	79	4	52	19	3	3	73	1.15
62155--62211	29	2.0	29	82	6	71	21	3	3	71	1.15
65007--65056	20	2.5	20	75	18	50	46	4	2	48	1.32
65633--65909	146	1.9	147	82	2	355	37	8	15	38	1.78
66383--66645	89	2.9	88	74	11	253	37	11	20	30	1.88
66318--66645	182	1.8	181	86	4	473	39	10	20	29	1.86
66306--66698	182	2.2	179	80	8	436	37	11	22	28	1.89
68883--68950	19	3.9	18	76	23	83	35	11	16	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68885--68947	32	2.0	32	96	0	117	34	12	17	34	1.88
68904--68928	13	1.9	13	100	0	50	36	16	16	32	1.90
74365--74491	20	5.8	20	70	21	94	30	18	10	40	1.84
74402--74539	51	2.7	51	91	4	224	28	20	10	39	1.86
75017--75073	23	2.5	23	100	0	114	17	10	8	63	1.51
80221--80304	40	2.1	40	95	0	150	34	9	13	42	1.76
80230--80307	20	3.9	20	73	6	68	33	10	11	44	1.74
84534--84574	21	2.0	21	85	0	55	14	9	7	68	1.39

Tables:   1

The End!