genome.fa.s1625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1625
Parameters: 2 7 7 80 10 50 1000
Length:  82356

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228--264	20	2.0	20	89	10	60	64	0	0	35	0.94
6304--6343	19	2.1	19	100	0	80	55	5	25	15	1.60
7482--7548	35	1.9	35	90	0	107	44	25	0	29	1.54
11965--12142	93	1.9	93	98	0	347	47	18	12	21	1.82
13171--13227	30	1.9	30	82	7	71	22	21	8	47	1.78
13663--13737	34	2.2	34	83	6	91	6	14	29	49	1.69
14205--14253	23	2.1	23	92	0	80	8	24	16	51	1.71
26082--26135	12	4.5	12	75	9	56	1	11	25	61	1.40
26995--27035	19	2.2	19	91	8	66	48	9	21	19	1.77
27144--27226	43	2.0	41	83	4	103	31	20	21	26	1.98
30661--30741	20	4.0	20	75	10	65	40	7	16	35	1.76
35845--35912	35	2.0	34	83	13	88	55	10	16	17	1.67
36223--36275	18	2.8	18	77	5	52	43	15	13	28	1.84
37178--37233	19	2.9	19	91	2	85	35	17	16	30	1.92
37218--37244	13	2.1	13	100	0	54	40	14	14	29	1.86
37859--37890	16	2.0	16	93	0	55	46	6	6	40	1.54
39123--39176	19	2.8	20	88	2	74	37	20	14	27	1.92
39970--40034	33	2.0	33	85	5	89	53	6	12	27	1.61
41572--41648	31	2.4	33	72	12	79	38	0	24	36	1.56
46880--46939	7	7.8	8	73	12	54	75	6	3	15	1.15
46813--46898	33	2.6	33	88	5	129	67	4	3	24	1.25
46880--46939	15	3.9	16	76	10	54	75	6	3	15	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47941--47969	9	3.3	9	90	9	51	89	0	0	10	0.48
56601--57505	52	18.8	50	75	10	630	30	17	25	25	1.97
56650--57505	149	6.0	147	77	10	715	30	17	25	25	1.98
56650--57505	253	3.6	246	78	11	780	30	17	25	25	1.98
57202--57452	39	6.0	39	72	16	180	27	19	24	28	1.98
57154--57500	87	4.0	87	94	0	552	29	19	23	26	1.98
57534--57593	28	2.2	27	76	5	68	26	18	26	28	1.98
57607--57680	27	2.7	27	91	0	121	28	9	36	25	1.87
57648--57748	34	3.0	34	89	2	132	37	10	32	18	1.86
57750--57996	34	7.8	32	85	6	285	34	16	27	21	1.94
57750--57996	67	3.9	65	82	10	275	34	16	27	21	1.94
57679--57962	128	2.2	124	77	11	281	35	15	29	20	1.93
57750--57993	30	7.7	31	84	6	264	34	16	27	21	1.95
66125--66150	13	2.0	13	100	0	52	38	15	15	30	1.88
69663--69831	51	3.3	51	79	1	178	28	26	13	31	1.93
69762--69979	121	1.8	121	81	4	278	29	23	13	33	1.93
77565--79496	42	45.8	42	74	7	1224	14	29	19	36	1.91
77622--79459	127	14.6	126	78	5	1164	14	29	19	35	1.92
79940--80073	15	8.4	15	70	16	67	71	5	2	20	1.16
79943--80032	33	2.8	33	86	10	123	68	5	2	23	1.21
79967--80039	32	2.2	32	90	7	110	65	8	2	23	1.33
79992--80039	17	2.7	19	81	12	57	68	8	2	20	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81642--81671	12	2.5	12	94	0	51	80	0	0	20	0.72

Tables:   1

The End!