genome.fa.s1635.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1635
Parameters: 2 7 7 80 10 50 1000
Length:  51690

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3092--3153	29	2.1	30	94	5	110	48	14	16	20	1.81
3766--3830	33	2.0	33	87	3	96	32	15	13	38	1.87
3932--3991	20	3.0	20	97	0	111	35	8	15	41	1.77
4344--4470	31	4.0	31	80	8	130	33	12	23	29	1.92
4730--4762	17	2.1	16	88	11	50	39	12	6	42	1.67
4866--4998	59	2.3	59	79	7	139	25	17	15	42	1.88
7677--7796	62	1.9	62	87	0	177	35	15	15	34	1.89
16788--16830	23	1.9	22	85	4	59	20	20	2	55	1.54
22630--22750	52	2.3	52	95	0	215	28	19	18	34	1.95
22630--22771	52	2.7	51	89	4	205	29	18	18	33	1.95
22834--22858	13	1.9	13	100	0	50	32	16	16	36	1.90
22812--22878	33	2.0	33	88	0	98	40	13	11	34	1.81
23604--24093	174	2.9	174	93	4	803	36	14	24	25	1.93
24004--24563	49	11.9	49	82	9	709	31	18	25	24	1.97
23957--24564	92	6.5	92	95	2	1036	31	18	25	24	1.97
24634--25329	34	20.8	34	76	15	616	33	13	33	20	1.91
24634--25329	71	10.4	70	84	8	695	33	13	33	20	1.91
24634--25329	141	5.2	135	82	10	744	33	13	33	20	1.91
25087--25270	28	6.2	28	71	15	120	31	13	33	21	1.92
24992--25301	62	4.9	61	88	5	415	31	13	32	21	1.92
25309--25422	59	1.9	60	92	5	196	27	18	28	26	1.98
25309--25419	31	3.7	31	90	8	176	25	18	28	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26419--26466	15	3.3	14	80	16	53	0	8	6	85	0.74
26421--26467	17	2.6	17	86	6	58	0	8	6	85	0.75
33649--33769	52	2.3	52	95	0	215	28	19	18	34	1.95
33649--33790	52	2.7	51	89	4	205	29	18	18	33	1.95
33853--33877	13	1.9	13	100	0	50	32	16	16	36	1.90
33831--33897	33	2.0	33	88	0	98	40	13	11	34	1.81
40286--40327	21	2.0	21	100	0	84	23	23	4	47	1.70
40891--40944	20	2.7	20	85	5	74	27	14	12	44	1.82
40908--41010	33	3.1	33	94	0	170	30	16	11	41	1.84
40941--40978	20	1.9	20	94	0	67	28	18	13	39	1.88
40928--40991	13	5.4	13	73	21	59	31	15	12	40	1.85
43360--43461	28	3.6	28	86	0	141	22	30	21	25	1.99
43444--43560	51	2.3	50	85	4	155	26	28	14	30	1.95
43531--43714	78	2.3	78	83	1	235	27	23	14	34	1.93
47450--47520	35	2.0	35	97	0	133	33	8	23	33	1.85
48704--48730	14	1.9	14	100	0	54	51	0	0	48	1.00
48969--49002	17	1.9	18	88	5	52	64	8	2	23	1.36

Tables:   1

The End!