Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1636
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 229876
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:2826 original size:44 final size:43
Alignment explanation
Indices: 2744--2826 Score: 96
Period size: 44 Copynumber: 1.9 Consensus size: 43
2734 AAAGATGGAC
** *
2744 AAAGGCACCAATATGCTGATTCAAGGCCAGTGATATTGGACTT
1 AAAGGCACCAATATGCTGATTCAAGGCCAACGACATTGGACTT
* *
2787 AAAGGCGCCAATGTGGCTGATTC-AGGCCCAACGACATTGG
1 AAAGGCACCAATAT-GCTGATTCAAGG-CCAACGACATTGG
2827 GTTTTGGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
43 15 0.45
44 18 0.55
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (43 bp):
AAAGGCACCAATATGCTGATTCAAGGCCAACGACATTGGACTT
Found at i:2877 original size:32 final size:35
Alignment explanation
Indices: 2841--2930 Score: 123
Period size: 32 Copynumber: 2.7 Consensus size: 35
2831 TGGAAAGAGA
2841 TGCCATCAACTTGTGTGGGCTTTTGAG-AA-GG-T
1 TGCCATCAACTTGTGTGGGCTTTTGAGAAAGGGTT
* *
2873 TGCCATCAACTTGTATTGGCTTTTGAGAAAGGGTT
1 TGCCATCAACTTGTGTGGGCTTTTGAGAAAGGGTT
* *
2908 TGCCACCGACTTGTGTGGGCTTT
1 TGCCATCAACTTGTGTGGGCTTT
2931 GGGAGGATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
32 25 0.51
33 2 0.04
34 2 0.04
35 20 0.41
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.36
Consensus pattern (35 bp):
TGCCATCAACTTGTGTGGGCTTTTGAGAAAGGGTT
Found at i:3032 original size:35 final size:34
Alignment explanation
Indices: 2963--3032 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
2953 TTGTGGACTT
* ** *
2963 AAAAGGGTGCCACAGAGTTGTGGGCTTTGAAAAG
1 AAAAAGGTGCCACAGAGTCATGGGCTTTAAAAAG
2997 AAAAAGGTGCCACAGAGTCATGGGCTTTAAGAAAG
1 AAAAAGGTGCCACAGAGTCATGGGCTTTAA-AAAG
3032 A
1 A
3033 CGCCACAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 26 0.84
35 5 0.16
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (34 bp):
AAAAAGGTGCCACAGAGTCATGGGCTTTAAAAAG
Found at i:4559 original size:11 final size:11
Alignment explanation
Indices: 4542--4571 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
4532 TCTTGACACT
4542 TTTTTTTGTTTA
1 TTTTTTTG-TTA
4554 TTTTTTTGTTA
1 TTTTTTTGTTA
4565 TTTTTTT
1 TTTTTTT
4572 TTTTACGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.87
Consensus pattern (11 bp):
TTTTTTTGTTA
Found at i:4559 original size:12 final size:12
Alignment explanation
Indices: 4542--4576 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
4532 TCTTGACACT
4542 TTTTTTTGTTTA
1 TTTTTTTGTTTA
4554 TTTTTTTG-TTA
1 TTTTTTTGTTTA
*
4565 TTTTTTTTTTTA
1 TTTTTTTGTTTA
4577 CGAGTGATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.86
Consensus pattern (12 bp):
TTTTTTTGTTTA
Found at i:7818 original size:19 final size:20
Alignment explanation
Indices: 7773--7824 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
7763 TTACAAGCCA
* *
7773 ATGTATTGATACATTTTGGG
1 ATGTATCGATACATCTTGGG
*
7793 ATGTATCGATACATCTTGTG
1 ATGTATCGATACATCTTGGG
7813 -TGTATCGATACA
1 ATGTATCGATACA
7825 AATAGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATCTTGGG
Found at i:7924 original size:13 final size:13
Alignment explanation
Indices: 7906--7930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7896 ACATTTGGTC
7906 ATGTATCGATACA
1 ATGTATCGATACA
7919 ATGTATCGATAC
1 ATGTATCGATAC
7931 TGTGAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:16583 original size:13 final size:13
Alignment explanation
Indices: 16565--16595 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
16555 ACATTTCTTC
16565 ATGTATCGATACA
1 ATGTATCGATACA
16578 ATGTATCGATACA
1 ATGTATCGATACA
*
16591 TTGTA
1 ATGTA
16596 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:16583 original size:33 final size:33
Alignment explanation
Indices: 16545--16611 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 33
16535 GTTACAAGCT
16545 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
16578 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
16611 A
1 A
16612 ATAGTGATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:16685 original size:19 final size:19
Alignment explanation
Indices: 16640--16696 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
16630 CTGCTAGTTT
**
16640 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA--TGAA
16661 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
16680 CATGTATCGATACAATG
1 CATGTATCGATACAATG
16697 TATCAATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 19 0.56
21 15 0.44
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:16722 original size:33 final size:32
Alignment explanation
Indices: 16662--16726 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
16652 CAATTTGTCC
* *
16662 ATGTATCGATACAATGAACATGTATCGATACA
1 ATGTATCAATACAAAGAACATGTATCGATACA
*
16694 ATGTATCAATACAAAGCAGCATGTATCGATACA
1 ATGTATCAATACAAAG-AACATGTATCGATACA
16727 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (32 bp):
ATGTATCAATACAAAGAACATGTATCGATACA
Found at i:17322 original size:42 final size:41
Alignment explanation
Indices: 17243--17344 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 41
17233 GTTTTCGTTT
* * * *
17243 TTTTCCCCCTTAAACGA-T-TATCTCCTCCTTTTTAAAAAA
1 TTTTCCCCCTTTAACAATTATATCTCCCCCTTTATAAAAAA
17282 TTTTCCCCCTTTAACAATTATATTCTCCCCCTTTATAAAAAA
1 TTTTCCCCCTTTAACAATTATA-TCTCCCCCTTTATAAAAAA
***
17324 GCCTCCCCCTTTAACAATTAT
1 TTTTCCCCCTTTAACAATTAT
17345 TTGTAAAAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
39 15 0.28
40 1 0.02
41 2 0.04
42 35 0.66
ACGTcount: A:0.28, C:0.30, G:0.02, T:0.39
Consensus pattern (41 bp):
TTTTCCCCCTTTAACAATTATATCTCCCCCTTTATAAAAAA
Found at i:25373 original size:20 final size:20
Alignment explanation
Indices: 25348--25400 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
25338 GTTACAAGCT
25348 ATGTATCGATACATT-T-CTTC
1 ATGTATCGATACATTGTAC--C
25368 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
25388 ATGTATCGATACA
1 ATGTATCGATACA
25401 AATAATGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 29 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:27631 original size:16 final size:17
Alignment explanation
Indices: 27566--27633 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 17
27556 GGGAGAAGAT
27566 AATTGTTTAAGGGGGAG
1 AATTGTTTAAGGGGGAG
* * * *
27583 AATTTTTTTA-GGAGAT
1 AATTGTTTAAGGGGGAG
*
27599 AATCGTTTAAGGGGGAG
1 AATTGTTTAAGGGGGAG
*
27616 AATTTTTTAA-GGGGAG
1 AATTGTTTAAGGGGGAG
27632 AA
1 AA
27634 AAACGAAAAC
Statistics
Matches: 39, Mismatches: 11, Indels: 3
0.74 0.21 0.06
Matches are distributed among these distances:
16 19 0.49
17 20 0.51
ACGTcount: A:0.32, C:0.01, G:0.32, T:0.34
Consensus pattern (17 bp):
AATTGTTTAAGGGGGAG
Found at i:28195 original size:33 final size:33
Alignment explanation
Indices: 28151--28230 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
28141 ACACACCCAG
*
28151 ATGTATCGATACATGCTGCCTTGTATTAATACA
1 ATGTATCGATACATGCTGCCTTGTATCAATACA
* *
28184 ATGTATTGATACATGCTGCCTTGTATCGATACA
1 ATGTATCGATACATGCTGCCTTGTATCAATACA
28217 ATGTATCGATACAT
1 ATGTATCGATACAT
28231 ATTCAATGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATGCTGCCTTGTATCAATACA
Found at i:28223 original size:13 final size:13
Alignment explanation
Indices: 28205--28229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28195 CATGCTGCCT
28205 TGTATCGATACAA
1 TGTATCGATACAA
28218 TGTATCGATACA
1 TGTATCGATACA
28230 TATTCAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:34650 original size:13 final size:13
Alignment explanation
Indices: 34632--34657 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34622 TACAGCAAGT
34632 ATGTATCGATACA
1 ATGTATCGATACA
34645 ATGTATCGATACA
1 ATGTATCGATACA
34658 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:36906 original size:21 final size:21
Alignment explanation
Indices: 36873--36917 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
36863 TTGCAAGTTG
*
36873 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
36895 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
36915 AAA
1 AAA
36918 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:38740 original size:15 final size:15
Alignment explanation
Indices: 38720--38750 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38710 TAAAAATGTC
*
38720 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
38735 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
38750 C
1 C
38751 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:43429 original size:13 final size:13
Alignment explanation
Indices: 43411--43436 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43401 TACAGCAAGT
43411 ATGTATCGATACA
1 ATGTATCGATACA
43424 ATGTATCGATACA
1 ATGTATCGATACA
43437 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:44403 original size:34 final size:35
Alignment explanation
Indices: 44365--44431 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
44355 CCTTACAACA
44365 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
44399 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
44432 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:44907 original size:13 final size:13
Alignment explanation
Indices: 44889--44914 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44879 CAATTTTTTG
44889 TGTATCGATACAT
1 TGTATCGATACAT
44902 TGTATCGATACAT
1 TGTATCGATACAT
44915 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44926 original size:32 final size:33
Alignment explanation
Indices: 44869--44932 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
44859 TACAAGCCAA
**
44869 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
44902 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
44933 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:45652 original size:21 final size:21
Alignment explanation
Indices: 45609--45654 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
45599 TAATTTACGC
* *
45609 ATTCTCCCCCGTTTATTAATA
1 ATTCTCCCCCGTTAATCAATA
45630 ATTCTCCCCC-TTAATCAAGTA
1 ATTCTCCCCCGTTAATCAA-TA
45651 ATTC
1 ATTC
45655 ATATCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (21 bp):
ATTCTCCCCCGTTAATCAATA
Found at i:46066 original size:30 final size:31
Alignment explanation
Indices: 46026--46087 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
46016 TTCATGCAAC
* *
46026 CAAAAGTTTATGCAAGCTCTCCCCCTTAATA
1 CAAAAGTTTATACAAACTCTCCCCCTTAATA
46057 CAAAA-TTTATACAAACTCTCCCCCTTAATA
1 CAAAAGTTTATACAAACTCTCCCCCTTAATA
46087 C
1 C
46088 GTTGTCACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.35, C:0.31, G:0.05, T:0.29
Consensus pattern (31 bp):
CAAAAGTTTATACAAACTCTCCCCCTTAATA
Found at i:46902 original size:13 final size:13
Alignment explanation
Indices: 46884--46908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46874 ACTGAAGTAA
46884 TGTATCGATACAT
1 TGTATCGATACAT
46897 TGTATCGATACA
1 TGTATCGATACA
46909 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:48587 original size:84 final size:84
Alignment explanation
Indices: 48432--48596 Score: 194
Period size: 84 Copynumber: 2.0 Consensus size: 84
48422 CATTTTCCAC
* * * *
48432 TTGCAACTCATTTCTTTTCTCTTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCTTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
48497 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
*
48516 TTGCAACTC-TTTCATATTCT-TCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCT
1 TTGCAACTCATTTC-TATTCTCT-TCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCT
* * *
48577 ACACTTATTGATTTATTTTC
62 AAACTCATTGATTTACTTTC
48597 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
82 6 0.09
83 10 0.14
84 53 0.77
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.53
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCTTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:50160 original size:34 final size:35
Alignment explanation
Indices: 50122--50188 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
50112 CCTTACAACA
50122 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
50156 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
50189 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:50664 original size:13 final size:13
Alignment explanation
Indices: 50646--50671 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50636 CAATTTTTTG
50646 TGTATCGATACAT
1 TGTATCGATACAT
50659 TGTATCGATACAT
1 TGTATCGATACAT
50672 ACTTTTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:51651 original size:28 final size:28
Alignment explanation
Indices: 51611--51667 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
51601 GCAAGAGAGC
51611 TATATCCCCATATTTCTTAGTGAAGTTT
1 TATATCCCCATATTTCTTAGTGAAGTTT
51639 TATATCCCCATATTTCTTAGTGAAGTTT
1 TATATCCCCATATTTCTTAGTGAAGTTT
51667 T
1 T
51668 CTTTCTCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.47
Consensus pattern (28 bp):
TATATCCCCATATTTCTTAGTGAAGTTT
Found at i:56568 original size:19 final size:18
Alignment explanation
Indices: 56540--56607 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
56530 AATTCAACAA
56540 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
56558 TTTTTTATCGAT--ATAA-
1 -TTTGTATCGATACATAAG
56574 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
56590 TATTGTATCGATACATAA
1 T-TTGTATCGATACATAA
56608 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 8 0.20
15 4 0.10
17 4 0.10
19 25 0.61
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.41
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:56583 original size:32 final size:32
Alignment explanation
Indices: 56542--56602 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
56532 TTCAACAATT
* *
56542 TGTATCGATACATAAGTTTTTTATCGATATAA
1 TGTATCGATACATAAGTATTGTATCGATATAA
56574 TGTATCGATACATAAGTATTGTATCGATA
1 TGTATCGATACATAAGTATTGTATCGATA
56603 CATAATTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATATAA
Found at i:56665 original size:13 final size:13
Alignment explanation
Indices: 56647--56672 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
56637 CATTTTTCTG
56647 TGTATCGATACAT
1 TGTATCGATACAT
56660 TGTATCGATACAT
1 TGTATCGATACAT
56673 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:56669 original size:33 final size:33
Alignment explanation
Indices: 56627--56693 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
56617 GCCAAGGAAA
***
56627 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
56660 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
56693 T
1 T
56694 TAGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:59286 original size:51 final size:50
Alignment explanation
Indices: 59211--59432 Score: 183
Period size: 52 Copynumber: 4.3 Consensus size: 50
59201 TTGTTTCCGA
*
59211 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAATATT-ATTTTTCATAATC
* * * * * * *
59262 AGAGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTC-CAAA-A-T-ATTATTTTTCATAATC
* * * * * *
59316 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAATAT-TATTTTTC-ATAATC
* * ** *
59368 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCC-AAAATA-TTATTTTTCATAATC
*
59420 GAGGATACTCCAA
1 GGGGATACTCCAA
59433 TCTCGTTATT
Statistics
Matches: 136, Mismatches: 27, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
50 2 0.01
51 28 0.21
52 50 0.37
53 17 0.12
54 36 0.26
55 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (50 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAATATTATTTTTCATAATC
Found at i:59420 original size:52 final size:51
Alignment explanation
Indices: 59044--59432 Score: 250
Period size: 54 Copynumber: 7.4 Consensus size: 51
59034 CTCAATTCTC
* * ** * *
59044 CACAATCGGGGATATTCCAACTCCGATTTTATTTTTAAAACA-CTAGTTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT
* *
59094 CTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
1 C-ACAATCGGGGATACTCCAACCCCGATTTTATTTCC--AAAACACCAATTT-TT
* * * ** * *
59149 CACAATCGGGGATACTCCAACCCTG--TTAATCATCGGGGATACTCCAACCCCGTTGTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTAT-TTC--CAAAACACCAA-----TT-TTT
* * * ***
59207 C-CGA--GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT
* * * * * * *
59255 CATAATCAGAGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAA---TTTTT
* * * *
59309 CACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTC
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT
** *
59360 CTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
1 C-ACAATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTT
*
59413 CACAATCGAGGATACTCCAA
1 CACAATCGGGGATACTCCAA
59433 TCTCGTTATT
Statistics
Matches: 258, Mismatches: 57, Indels: 46
0.71 0.16 0.13
Matches are distributed among these distances:
48 4 0.02
49 3 0.01
50 1 0.00
51 66 0.26
52 50 0.19
53 29 0.11
54 71 0.28
55 20 0.08
56 2 0.01
57 6 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (51 bp):
CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT
Found at i:59453 original size:28 final size:28
Alignment explanation
Indices: 59417--59493 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
59407 ATTTTTCACA
* * *
59417 ATCGAGGATACTCCAATCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTACTTC
*
59445 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTACTTC
***
59473 CGAGGGGATACTCCAACCTCG
1 ATCGGGGATACTCCAACCTCG
59494 ACTTTATTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTACTTC
Found at i:59517 original size:265 final size:265
Alignment explanation
Indices: 59044--59542 Score: 781
Period size: 265 Copynumber: 1.9 Consensus size: 265
59034 CTCAATTCTC
* * * *
59044 CACAATCGGGGATATTCCAACTCCGATTTTATTTTTAAAACACTAGTTTTCTATAATCGGGGATA
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATA
*
59109 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCCTG
66 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCTG
** *
59174 TTAATCATCGGGGATACTCCAACCCCGTTGTTTCCGAGGGGATACTCCAACCCCGACTTTATTTC
131 TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCC
*
59239 CAAAATATTGATTTTTCATAATCAGAGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTT
196 CAAAATATTGATTTCTCATAATCAGAGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTT
59304 TTTTT
261 TTTTT
* *
59309 CACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACA-TCAATTTTCCTTTAATCGGGGA
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACT-AATTTT-CTATAATCGGGGA
*
59373 TACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTT-TTCACAATCGAGGATACTCCAA-TC
64 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
59435 TCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCTCGACTTTA
129 T-GTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTA
** *
59500 TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCC
192 TTCCCAAAATATTGATTTCTCATAATCAGAGATACTCCAACCC
59543 TGTTATTTTC
Statistics
Matches: 213, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
263 2 0.01
264 26 0.12
265 149 0.70
266 36 0.17
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (265 bp):
CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCTG
TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCC
CAAAATATTGATTTCTCATAATCAGAGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTT
TTTTT
Found at i:59586 original size:79 final size:80
Alignment explanation
Indices: 59448--59602 Score: 192
Period size: 79 Copynumber: 1.9 Consensus size: 80
59438 TTATTTCATC
* *
59448 GGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCTCGACTTTATTCCCAAAATATT
1 GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCTCGACTTTATTCCCAAAATATT
*
59513 -GATTTCTCATAATT
66 AAATTTCTCATAATT
* * * *
59527 GGGGATACTCCAACCCTGTTATTTTCGAGGGAACACTCCAAACC-CG-TTATTA-TCTCCAAAAT
1 GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCC-AACCTCGACT-TTATTC-CCAAAAT
59589 ATTAAATTTCTCAT
63 ATTAAATTTCTCAT
59603 CGGGAAAAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.05
79 49 0.75
80 13 0.20
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (80 bp):
GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCTCGACTTTATTCCCAAAATATT
AAATTTCTCATAATT
Found at i:71483 original size:1 final size:1
Alignment explanation
Indices: 71472--71529 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
71462 CCTTCTCTTC
* * * * * * *
71472 AAAAAAGAAAAAAAAACAAAAAAACAAAAAAACAAAACAAAGAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
71530 TCTGCTTAAG
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.07, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:71485 original size:8 final size:8
Alignment explanation
Indices: 71471--71520 Score: 64
Period size: 8 Copynumber: 6.0 Consensus size: 8
71461 ACCTTCTCTT
71471 CAAAAAAGA
1 CAAAAAA-A
*
71480 AAAAAAAA
1 CAAAAAAA
71488 CAAAAAAA
1 CAAAAAAA
71496 CAAAAAAA
1 CAAAAAAA
71504 CAAAACAAA
1 CAAAA-AAA
*
71513 GAAAAAAA
1 CAAAAAAA
71521 AAAGAAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
8 24 0.65
9 13 0.35
ACGTcount: A:0.86, C:0.10, G:0.04, T:0.00
Consensus pattern (8 bp):
CAAAAAAA
Found at i:71499 original size:25 final size:25
Alignment explanation
Indices: 71471--71529 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
71461 ACCTTCTCTT
71471 CAAAAAAGA-AAAAAAAACAAAAAAA
1 CAAAAAA-ACAAAAAAAACAAAAAAA
* *
71496 CAAAAAAACAAAACAAAGAAAAAAA
1 CAAAAAAACAAAAAAAACAAAAAAA
*
71521 AAAGAAAAA
1 CAA-AAAAA
71530 TCTGCTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 23 0.79
26 5 0.17
ACGTcount: A:0.86, C:0.08, G:0.05, T:0.00
Consensus pattern (25 bp):
CAAAAAAACAAAAAAAACAAAAAAA
Found at i:71508 original size:21 final size:19
Alignment explanation
Indices: 71472--71529 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 19
71462 CCTTCTCTTC
*
71472 AAAAAAGAAAAAAAAACAA
1 AAAAAAAAAAAAAAAACAA
71491 AAAAACAAAAAAACAAAACAA
1 AAAAA-AAAAAAA-AAAACAA
71512 AGAAAAAAAAAAGAAAAA
1 A-AAAAAAAAAA-AAAAA
71530 TCTGCTTAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
19 5 0.15
20 6 0.18
21 18 0.53
22 5 0.15
ACGTcount: A:0.88, C:0.07, G:0.05, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAAAAACAA
Found at i:72710 original size:61 final size:59
Alignment explanation
Indices: 72499--73683 Score: 1356
Period size: 55 Copynumber: 20.3 Consensus size: 59
72489 GCTTTTTAGC
* * *
72499 CCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGT
* *
72559 CCTCAAAGAGCAGGAC-AC----CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTT-TCAGT
* * *
72614 CCTCAAAGAGCAGGACGCCTTCTCCTTTTACAGCCCACACAAGTTGGTGGCATTTTCCTAGT
1 CCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-C-AGT
* * *
72676 CCTCAAAGAGCGGGACGCCTTTTCTTTCAAAGCCCACACAAGTTGCTGGCACCTTTTC-GT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-C-TTTCAGT
* * *
72736 CCCCAAAGAGCAGGA---C--TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTT-TCAGT
* * *
72791 CCTCAAAGAGCAGGACGCCTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAAT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACTT-TCAGT
* *
72852 CCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGT
1 CCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC-AGT
* * * *
72913 CCTCAAAGAGCGGGACGCCTTTTCTTTCAAAGCCTACACAAGTTGGTGGCACCTTTCCGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGT
* * * ** *
72973 CCCCAAAGAGCAGGAGGAC--ACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC-AGT
* * *
73031 CCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCATTTTCCAGT
1 CCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-CAGT
* * *
73092 CCTCAAAGAGCGGGATGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGT
* * * *
73151 CCTTAAAGAGCAGGACCCCTTTTCTTTTAAAGCCCACACAAATTGGTGGCATTTTCCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-CAGT
* * * *
73211 CCTCAAAGAGCGGGACGCCATTTCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGT
** * * *
73270 CCTCAAAGAGTGGGATGCATTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGT
* * *
73329 CCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGT
* * * *
73388 CCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAACCCACACAAGTTGGTGGGACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTCAGT
* *
73449 CCCCAAAGAGCAGGAC-CC----CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGT
* * * *
73504 CCCCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCCAAT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-CAGT
*
73559 CCTCAAAGAGCAGGACACC---TC--TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGT
* *
73614 CCTCAAAGAGCAGGACGCC-TTTC----AAAGCCCACACGAGTTGGTGGCACTTTTTAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCAGT
73669 CCTCAAAGAGCAGGA
1 CCTCAAAGAGCAGGA
73684 TACACTTTAT
Statistics
Matches: 980, Mismatches: 104, Indels: 87
0.84 0.09 0.07
Matches are distributed among these distances:
53 4 0.00
54 36 0.04
55 240 0.24
56 10 0.01
57 7 0.01
58 45 0.05
59 192 0.20
60 181 0.18
61 232 0.24
62 30 0.03
63 3 0.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (59 bp):
CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGT
Found at i:73315 original size:238 final size:234
Alignment explanation
Indices: 72521--73683 Score: 1444
Period size: 238 Copynumber: 5.0 Consensus size: 234
72511 AGATGCCTTT
72521 TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGA-CA--CCTTTTA
1 TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGAGCATTCCTTTTA
* * *
72583 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTACAGC
66 AAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGC
** *
72648 CCACACAAGTTGGTGGCATTTTCCTAGTCCTCAAAGAGCGGGACGCCTTTTCTTTCAAAGCCCAC
130 CCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCAC
*
72713 ACAAGTTGCTGGCACCTTTTC-GTCCCCAAAGAGCAGGA---C
193 ACAAGTTGGTGGCA-CTTTTCAGTCCCCAAAGAGCAGGACGCC
*
72752 TCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCT
1 TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--CAGTCCTCAAAGAGCAGGA-GCATTC-CT
* * *
72816 TTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGCAGGACGCCTTCTCCTTTT
62 TTT-AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTT-TTCTTTT
** *
72881 AAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCGGGACGCCTTTTCTTTCAAAGC
125 AAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGC
* * * * *
72946 CTACACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGAGGAC
189 CCACACAAGTTGGTGGCACTTTTCAGTCCCCAAAGAGCAGGACGCC
* *
72992 ACCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGCCTTCTCC
1 TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGA-G-CAT-TCC
* * * *
73056 TTTTAAAGCCCACATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGATGCCTTTTCTTTTA
61 TTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTA
* * *
73121 AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTTAAAGAGCAGGACCCCTTTTCTTTTAAAGCCC
126 AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCC
* * *
73186 ACACAAATTGGTGGCA-TTTTCCAGTCCTCAAAGAGCGGGACGCC
191 ACACAAGTTGGTGGCACTTTT-CAGTCCCCAAAGAGCAGGACGCC
* * ** *
73230 ATTTCTTTTAAAGCCCACACAAGTTGGTAGCACCTTCAGTCCTCAAAGAGTGGGATGCATTTTCT
1 --TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGA-GCA-TTCCT
* *
73295 TTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAA
62 TTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAA
* * * *
73359 AGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAACCC
127 AGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTC-TTTCAAAGCCC
* *
73424 ACACAAGTTGGTGGGACCTTTCAGTCCCCAAAGAGCAGGA--CC
191 ACACAAGTTGGTGGCACTTTTCAGTCCCCAAAGAGCAGGACGCC
* * *
73466 -CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGA-CA--CCTTTC
1 TCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGAGCATTCCTTTT
* * *
73527 AAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAGGACACC---TC--TTAAAGC
65 AAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGC
73587 CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG-C----CTTTCAAAGCCCACA
130 CCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCACA
* * *
73647 CGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
194 CAAGTTGGTGGCACTTTTCAGTCCCCAAAGAGCAGGA
73684 TACACTTTAT
Statistics
Matches: 832, Mismatches: 75, Indels: 61
0.86 0.08 0.06
Matches are distributed among these distances:
220 45 0.05
221 1 0.00
225 26 0.03
226 22 0.03
227 2 0.00
229 29 0.03
230 23 0.03
231 30 0.04
232 21 0.03
233 28 0.03
234 19 0.02
236 8 0.01
237 160 0.19
238 223 0.27
239 55 0.07
240 128 0.15
241 10 0.01
242 2 0.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (234 bp):
TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGAGCATTCCTTTTA
AAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCC
CACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCACACA
AGTTGGTGGCACTTTTCAGTCCCCAAAGAGCAGGACGCC
Found at i:73499 original size:29 final size:29
Alignment explanation
Indices: 73466--73611 Score: 96
Period size: 28 Copynumber: 5.2 Consensus size: 29
73456 GAGCAGGACC
73466 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA
* **
73495 CCTTTC--AGTCCC-CA-AAG-AGCAGGACA
1 CCTTTCAAAG-CCCACACAAGTTGGTGG-CA
73521 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * **
73550 -TTTTCCAA-TCCTCA-AAG-AGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGG-CA
73576 CCTCTT-AAAGCCCACACAAGTTGGTGGCA
1 CCT-TTCAAAGCCCACACAAGTTGGTGGCA
73605 CCTTTCA
1 CCTTTCA
73612 GTCCTCAAAG
Statistics
Matches: 83, Mismatches: 20, Indels: 28
0.63 0.15 0.21
Matches are distributed among these distances:
25 6 0.07
26 16 0.19
27 14 0.17
28 21 0.25
29 20 0.24
30 6 0.07
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (29 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:73534 original size:26 final size:26
Alignment explanation
Indices: 73450--73534 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
73440 CCTTTCAGTC
*
73450 CCCAAAGAGCAGGACCCCTTTCAAAG
1 CCCAAAGAGCAGGACACCTTTCAAAG
** * ***
73476 CCCACACA-AGTTGGTGGCACCTTTCAGTC
1 CCCA-A-AGAG-CAG-GACACCTTTCAAAG
73505 CCCAAAGAGCAGGACACCTTTCAAAG
1 CCCAAAGAGCAGGACACCTTTCAAAG
73531 CCCA
1 CCCA
73535 CACAAGTTGG
Statistics
Matches: 41, Mismatches: 13, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
26 18 0.44
27 5 0.12
28 5 0.12
29 13 0.32
ACGTcount: A:0.31, C:0.35, G:0.19, T:0.15
Consensus pattern (26 bp):
CCCAAAGAGCAGGACACCTTTCAAAG
Found at i:74484 original size:19 final size:19
Alignment explanation
Indices: 74460--74527 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 19
74450 AATTCAACAA
74460 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
74479 TTTGTATGGATAC--AA--
1 TTTGTATCGATACATAAGT
*
74494 --TGTATTGATACATAAGT
1 TTTGTATCGATACATAAGT
*
74511 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
74528 TTAGCTACTG
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
13 10 0.25
15 2 0.05
17 2 0.05
19 26 0.65
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:74504 original size:32 final size:32
Alignment explanation
Indices: 74462--74524 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
74452 TTCAACAATT
* *
74462 TGTATCGATACATAAGTTTTGTATGGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
*
74494 TGTATTGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
74525 TAATTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:74585 original size:13 final size:13
Alignment explanation
Indices: 74567--74592 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74557 CATTTTTCTG
74567 TGTATCGATACAT
1 TGTATCGATACAT
74580 TGTATCGATACAT
1 TGTATCGATACAT
74593 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:74589 original size:33 final size:33
Alignment explanation
Indices: 74547--74613 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
74537 GCCAAGGAAA
***
74547 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
74580 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
74613 T
1 T
74614 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:76049 original size:13 final size:13
Alignment explanation
Indices: 76031--76055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76021 CATAAAGTGT
76031 TGTATCGATACAA
1 TGTATCGATACAA
76044 TGTATCGATACA
1 TGTATCGATACA
76056 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:76053 original size:33 final size:33
Alignment explanation
Indices: 76011--76077 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
76001 TTCAACGATT
76011 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
76044 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
76077 T
1 T
76078 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:76136 original size:13 final size:13
Alignment explanation
Indices: 76118--76142 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76108 ATCACTTAAA
76118 TGTATCGATACAT
1 TGTATCGATACAT
76131 TGTATCGATACA
1 TGTATCGATACA
76143 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:76207 original size:52 final size:52
Alignment explanation
Indices: 76151--76279 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
76141 CACTGATCTT
*
76151 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* **
76203 TGTATCGATACATGCAGGTAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
76255 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
76280 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:90111 original size:1 final size:1
Alignment explanation
Indices: 90105--90166 Score: 70
Period size: 1 Copynumber: 62.0 Consensus size: 1
90095 CATCCTCCAC
* * * * * *
90105 AAAAAAAAAGAAAAAAAACAAAACAAAACAAAAAAAAAACAAAACAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
90167 GGGTCCGGAT
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:90127 original size:16 final size:16
Alignment explanation
Indices: 90105--90163 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 16
90095 CATCCTCCAC
*
90105 AAAAAAAAA-GAAA-A
1 AAAAAAAAACAAAACA
*
90119 AAAACAAAACAAAACA
1 AAAAAAAAACAAAACA
90135 AAAAAAAAACAAAACA
1 AAAAAAAAACAAAACA
90151 AAAAAAAAA-AAAA
1 AAAAAAAAACAAAA
90164 AAAGGGTCCG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
14 8 0.20
15 7 0.17
16 25 0.62
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (16 bp):
AAAAAAAAACAAAACA
Found at i:90164 original size:21 final size:21
Alignment explanation
Indices: 90107--90164 Score: 98
Period size: 21 Copynumber: 2.7 Consensus size: 21
90097 TCCTCCACAA
90107 AAAAAAAGAAAAAAAACAAAAC
1 AAAAAAA-AAAAAAAACAAAAC
*
90129 AAAACAAAAAAAAAACAAAAC
1 AAAAAAAAAAAAAAACAAAAC
90150 AAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAA
90165 AAGGGTCCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
21 28 0.82
22 6 0.18
ACGTcount: A:0.90, C:0.09, G:0.02, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAAAAAAACAAAAC
Found at i:91660 original size:30 final size:30
Alignment explanation
Indices: 91618--91725 Score: 112
Period size: 30 Copynumber: 3.5 Consensus size: 30
91608 CCACAAGTTA
91618 GTGGCA-TCTTTTTCAAAGCCCACGACTCC
1 GTGGCACTCTTTTTCAAAGCCCACGACTCC
* * *
91647 GTGGCACTTTTTTTCCTTCTAAGTCCACGACTCC
1 GTGGCAC--TCTTT--TTCAAAGCCCACGACTCC
* *
91681 GTGGCAC-CTTCTTTCAAAGCCCACAACTCT
1 GTGGCACTCTT-TTTCAAAGCCCACGACTCC
91711 GTGGCACTCTTTTTC
1 GTGGCACTCTTTTTC
91726 CCTTTTAAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
29 6 0.09
30 25 0.39
31 5 0.08
32 5 0.08
34 23 0.36
ACGTcount: A:0.18, C:0.33, G:0.16, T:0.33
Consensus pattern (30 bp):
GTGGCACTCTTTTTCAAAGCCCACGACTCC
Found at i:91751 original size:36 final size:36
Alignment explanation
Indices: 91691--91804 Score: 112
Period size: 36 Copynumber: 3.2 Consensus size: 36
91681 GTGGCACCTT
* *
91691 CTTTCAAAG-CCCACAACTCTGTGGCACTCTTTTTCC
1 CTTTTAAAGTCCC-CAACTTTGTGGCACTCTTTTTCC
*
91727 CTTTTAAAGTCCCCAACTTTGTGGCAC-CTTGTT-C
1 CTTTTAAAGTCCCCAACTTTGTGGCACTCTTTTTCC
* * **
91761 CTTTT-AAGTCCACAACTTCGTGGCA-TCTTTCACC
1 CTTTTAAAGTCCCCAACTTTGTGGCACTCTTTTTCC
91795 CTTTTTAAAG
1 C-TTTTAAAG
91805 CCCACACAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
33 21 0.32
34 8 0.12
35 9 0.14
36 24 0.37
37 3 0.05
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (36 bp):
CTTTTAAAGTCCCCAACTTTGTGGCACTCTTTTTCC
Found at i:91751 original size:66 final size:63
Alignment explanation
Indices: 91618--91756 Score: 170
Period size: 64 Copynumber: 2.2 Consensus size: 63
91608 CCACAAGTTA
* * * *
91618 GTGGCATCTTTTTCAAAGCCCACGACTCCGTGGCACTTTTTTTCCTTCTAAGTCCACGACTCC
1 GTGGCACCTTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCCCTTCTAAGTCCACAACTCC
* * * *
91681 GTGGCACCTTCTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCCCAACTT
1 GTGGCACCTT-TTTCAAAGCCCACAACTCCGTGGCACT-TTTTTCCCTTCT-AAGTCCACAACTC
*
91746 T
63 C
91747 GTGGCACCTT
1 GTGGCACCTT
91757 GTTCCTTTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
63 9 0.14
64 25 0.39
65 10 0.16
66 20 0.31
ACGTcount: A:0.18, C:0.33, G:0.15, T:0.34
Consensus pattern (63 bp):
GTGGCACCTTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCCCTTCTAAGTCCACAACTCC
Found at i:91777 original size:33 final size:36
Alignment explanation
Indices: 91691--91789 Score: 116
Period size: 36 Copynumber: 2.9 Consensus size: 36
91681 GTGGCACCTT
* * * *
91691 CTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 CTTTTAAAGTCCACAACTTTGTGGCACTCTTGTTCC
*
91727 CTTTTAAAGTCCCCAACTTTGTGGCAC-CTTGTT-C
1 CTTTTAAAGTCCACAACTTTGTGGCACTCTTGTTCC
*
91761 CTTTT-AAGTCCACAACTTCGTGGCA-TCTT
1 CTTTTAAAGTCCACAACTTTGTGGCACTCTT
91790 TCACCCTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
33 21 0.38
34 6 0.11
35 5 0.09
36 23 0.42
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.36
Consensus pattern (36 bp):
CTTTTAAAGTCCACAACTTTGTGGCACTCTTGTTCC
Found at i:91798 original size:34 final size:33
Alignment explanation
Indices: 91667--91810 Score: 91
Period size: 36 Copynumber: 4.3 Consensus size: 33
91657 TTTTCCTTCT
* * * *
91667 AAGTCCACGACTCCGTGGCA-CCTT--CTTTCA
1 AAGTCCACAACTTCGTGGCATCTTTCCCTTTTA
*
91697 AAGCCCACAAC-TCTGTGGCACTCTTTTTCCCTTTTA
1 AAGTCCACAACTTC-GTGGCA-TC--TTTCCCTTTTA
* * * *
91733 AAGTCCCCAACTTTGTGGCACCTTGTTCCTTTT-
1 AAGTCCACAACTTCGTGGCATCTT-TCCCTTTTA
91766 AAGTCCACAACTTCGTGGCATCTTTCACCCTTTTTA
1 AAGTCCACAACTTCGTGGCATCTTT--CCC-TTTTA
*
91802 AAGCCCACA
1 AAGTCCACA
91811 CAAGTTGGTG
Statistics
Matches: 86, Mismatches: 15, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
29 1 0.01
30 15 0.17
32 2 0.02
33 23 0.27
34 11 0.13
35 5 0.06
36 28 0.33
37 1 0.01
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (33 bp):
AAGTCCACAACTTCGTGGCATCTTTCCCTTTTA
Found at i:91835 original size:31 final size:31
Alignment explanation
Indices: 91799--91986 Score: 225
Period size: 31 Copynumber: 5.9 Consensus size: 31
91789 TTCACCCTTT
*
91799 TTAAAGCCCACACAAGTTGGTGGCAACCCCC
1 TTAAAGCCCACACAAGTCGGTGGCAACCCCC
* *
91830 TTAAAGCCCATACAAGTCGGTGGCAACCTTTCC
1 TTAAAGCCCACACAAGTCGGTGGCAACC--CCC
*
91863 -TAAAGCCCACACAAGTTGGTGGCAACCCCC
1 TTAAAGCCCACACAAGTCGGTGGCAACCCCC
* * *
91893 TCAAAGCCCACACAAGTCGGTGCCAACCCTC
1 TTAAAGCCCACACAAGTCGGTGGCAACCCCC
* **
91924 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
1 T-TAAAGCCCACACAAGTCGGTGGCAACC-CCC
*
91957 TCTAAAGCCCACACAAGTCAGTGGCAACCC
1 T-TAAAGCCCACACAAGTCGGTGGCAACCC
91987 TTCTAAGCCT
Statistics
Matches: 135, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
30 2 0.01
31 53 0.39
32 49 0.36
33 31 0.23
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.17
Consensus pattern (31 bp):
TTAAAGCCCACACAAGTCGGTGGCAACCCCC
Found at i:91877 original size:32 final size:30
Alignment explanation
Indices: 91800--91985 Score: 219
Period size: 32 Copynumber: 5.9 Consensus size: 30
91790 TCACCCTTTT
* *
91800 TAAAGCCCACACAAGTTGGTGGCAACCCCC
1 TAAAGCCCACACAAGTCGGTGGCAACCTCC
*
91830 TTAAAGCCCATACAAGTCGGTGGCAACCTTTCC
1 -TAAAGCCCACACAAGTCGGTGGCAACC--TCC
* *
91863 TAAAGCCCACACAAGTTGGTGGCAACCCCC
1 TAAAGCCCACACAAGTCGGTGGCAACCTCC
*
91893 TCAAAGCCCACACAAGTCGGTGCCAACCCTCTC
1 T-AAAGCCCACACAAGTCGGTGGCAA-CCTC-C
*
91926 TAAAGCCCACACAAGTTGGTGGCAACCATTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACC--TC-C
*
91959 TAAAGCCCACACAAGTCAGTGGCAACC
1 TAAAGCCCACACAAGTCGGTGGCAACC
91986 CTTCTAAGCC
Statistics
Matches: 135, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
30 3 0.02
31 49 0.36
32 50 0.37
33 33 0.24
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.17
Consensus pattern (30 bp):
TAAAGCCCACACAAGTCGGTGGCAACCTCC
Found at i:91995 original size:63 final size:63
Alignment explanation
Indices: 91800--91992 Score: 291
Period size: 63 Copynumber: 3.0 Consensus size: 63
91790 TCACCCTTTT
* *
91800 TAAAGCCCACACAAGTTGGTGGCAACCCCCT-TAAAGCCCATACAAGTCGGTGGCAACCTTTCC
1 TAAAGCCCACACAAGTTGGTGGCAACCCCCTCTAAAGCCCACACAAGTCGGTGGCAACCCTT-C
*
91863 TAAAGCCCACACAAGTTGGTGGCAACCCCCTC-AAAGCCCACACAAGTCGGTGCCAACCCTCTC
1 TAAAGCCCACACAAGTTGGTGGCAACCCCCTCTAAAGCCCACACAAGTCGGTGGCAACCCT-TC
** *
91926 TAAAGCCCACACAAGTTGGTGGCAACCATTCTCTAAAGCCCACACAAGTCAGTGGCAACCCTTC
1 TAAAGCCCACACAAGTTGGTGGCAACC-CCCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTC
91990 TAA
1 TAA
91993 GCCTAATATA
Statistics
Matches: 119, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
63 84 0.71
64 9 0.08
65 26 0.22
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.18
Consensus pattern (63 bp):
TAAAGCCCACACAAGTTGGTGGCAACCCCCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTC
Found at i:92955 original size:20 final size:20
Alignment explanation
Indices: 92911--92968 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
92901 ATTTCAACGA
***
92911 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATATTTT
*
92931 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
92951 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
92969 AAGCTACTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:97530 original size:28 final size:27
Alignment explanation
Indices: 97463--97535 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
97453 CTTCACAATC
**
97463 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
** *
97490 GGGGATACTCCAACCCCGTTGTTTCCGA
1 GGGGATACTCCAACCCCGTT-AATCAGA
97518 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
97536 ACTTTATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.22, C:0.34, G:0.23, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:97637 original size:54 final size:53
Alignment explanation
Indices: 97557--97741 Score: 184
Period size: 54 Copynumber: 3.5 Consensus size: 53
97547 AAAATATTGA
* *
97557 TTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTT
1 TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATT-CTAAAACACCAATTT
* *
97611 TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAGCACCAATTT
1 TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTCT-AAAACACCAATTT
* * * * *
97665 TCCTTT---AATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAACACCAA---
1 T-TTTTCACAATCGGGGATACTCCAACCCCGGTTTTA-TT-CTAAAACACCAATTT
* *
97715 TTTTTCACAATCGAGAATACTCCAACC
1 TTTTTCACAATCGGGGATACTCCAACC
97742 TTGTTATTTC
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
49 3 0.03
50 1 0.01
52 41 0.38
53 12 0.11
54 49 0.45
55 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.34
Consensus pattern (53 bp):
TTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTCTAAAACACCAATTT
Found at i:97698 original size:52 final size:53
Alignment explanation
Indices: 97354--97718 Score: 200
Period size: 54 Copynumber: 6.9 Consensus size: 53
97344 AATTCTCCAC
* * * * * *
97354 AATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAGTTTT-CTAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
* *
97405 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAA-TTT-CTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAAACACCAATTTTCCTT--T
* * *** * * **
97459 AATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAA--CCCCGTTGT
1 AATCGGGGATACTCCAACCCCGATTTTAT-TTC-CAAAAACACCAATTTTCC-TT-T
* * * *** * *
97512 -TTCCGAGGGGATACTCCAACCCCGACTTTATTTCC-AAAATATTGATTTTTC-AT
1 AAT-C--GGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
* * * * *
97565 AATCGGGGATACTCCAACCCCGGTTTTA-TTGCTAAAACACTAATTTT-TTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
* * *
97616 CACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAGCACCAATTTTCCTTT
1 ---AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
* *
97671 AATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAACACCAATTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
97719 TCACAATCGA
Statistics
Matches: 239, Mismatches: 51, Indels: 46
0.71 0.15 0.14
Matches are distributed among these distances:
50 3 0.01
51 65 0.27
52 39 0.16
53 34 0.14
54 67 0.28
55 24 0.10
56 3 0.01
57 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (53 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTTT
Found at i:97762 original size:28 final size:28
Alignment explanation
Indices: 97731--97800 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
97721 ACAATCGAGA
** * **
97731 ATACTCCAACCTTGTTATTTCATCGGGG
1 ATACTCCAACCCCGTTACTTCAGAGGGG
*
97759 ATACTCCAACCCCGTTACTTCCGAGGGG
1 ATACTCCAACCCCGTTACTTCAGAGGGG
97787 ATACTCCAACCCCG
1 ATACTCCAACCCCG
97801 ACTTTATTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.26
Consensus pattern (28 bp):
ATACTCCAACCCCGTTACTTCAGAGGGG
Found at i:97824 original size:265 final size:265
Alignment explanation
Indices: 97351--97851 Score: 801
Period size: 265 Copynumber: 1.9 Consensus size: 265
97341 CTCAATTCTC
* * * *
97351 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAGTTTTCTATAATCGGGGATA
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
* *
97416 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCG
66 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGAATACTCCAACCCCG
**
97481 TTAATCATCGGGGATACTCCAACCCCGTTGTTTCCGAGGGGATACTCCAACCCCGACTTTATTTC
131 TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTTC
*
97546 CAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTT
196 CAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTT
97611 TTTTT
261 TTTTT
* * *
97616 CACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAGCACCAATTTTCCTTTAATCGGGGAT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGAT
* **
97681 ACTCCAACTCTGATTTTATTTCC-AAAAACACCAATTT-TTCACAATCGAGAATACTCCAACCTT
65 ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGAATACTCCAACCCC
*
97744 GTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTA-T
130 GTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
*
97808 TCTCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCG
194 TC-CAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCG
97852 TTATTTTCGA
Statistics
Matches: 216, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
264 29 0.13
265 152 0.70
266 35 0.16
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (265 bp):
CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGAATACTCCAACCCCG
TTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTTC
CAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTT
TTTTT
Found at i:97894 original size:79 final size:80
Alignment explanation
Indices: 97755--97909 Score: 217
Period size: 79 Copynumber: 1.9 Consensus size: 80
97745 TTATTTCATC
* *
97755 GGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCTCAAAATATT
1 GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACTTTATTCTCAAAATATT
*
97820 -GATTTCTCATAATT
66 AAATTTCTCATAATT
* * *
97834 GGGGATACTCCAACCCCGTTATTTTCGAGGGAACACTCCAACCCCG-TTATTA-TCTCCAAAATA
1 GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACT-TTATTCT-CAAAATA
97897 TTAAATTTCTCAT
64 TTAAATTTCTCAT
97910 CGGGAAATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
78 4 0.06
79 54 0.81
80 9 0.13
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (80 bp):
GGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACTTTATTCTCAAAATATT
AAATTTCTCATAATT
Found at i:99846 original size:154 final size:154
Alignment explanation
Indices: 99668--99974 Score: 431
Period size: 154 Copynumber: 2.0 Consensus size: 154
99658 TCTAAAGGGC
* * * *
99668 TTAAAAAGAATTATAGATAGGATGAACCTACCCTAAATATCCATCTTTGGCATAAAAGCAAACCT
1 TTAAAAAGAATTACAGATAGGATGAACCTACCCTAAATACCCACCTTTGGCATAAAAGCAAACCC
*
99733 AGTGACAACCTAGGACTC-AGTTTTGGAAAATTATGAAATAACCCTTAAGG-GATACCTTT-GAC
66 AGTGACAACCTAGGACTCGA-TTTTGAAAAATTATGAAA-AACCCTTAAGGAGATA-CTTTCGAC
*
99795 TTAGAAGTGCCTGATACCCTTAAAAGA
128 TTAAAAGTGCCTGATACCCTTAAAAGA
* ** *
99822 TTAAAAAGAATTACAGATAGGATGAACTTATTCTAAATACCCACCTTTGGCATAAAAGCGAACCC
1 TTAAAAAGAATTACAGATAGGATGAACCTACCCTAAATACCCACCTTTGGCATAAAAGCAAACCC
* ** *
99887 AGTGATAACCTAGGACTCGATTTTGAAAAATTATGAAAATGCCTTTAGGAGATACTTTCGACTTA
66 AGTGACAACCTAGGACTCGATTTTGAAAAATTATGAAAAACCCTTAAGGAGATACTTTCGACTTA
*
99952 AAAGTGCCTGATACCTTTAAAAG
131 AAAGTGCCTGATACCCTTAAAAG
99975 GACTCAAAAT
Statistics
Matches: 135, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
153 12 0.09
154 122 0.90
155 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (154 bp):
TTAAAAAGAATTACAGATAGGATGAACCTACCCTAAATACCCACCTTTGGCATAAAAGCAAACCC
AGTGACAACCTAGGACTCGATTTTGAAAAATTATGAAAAACCCTTAAGGAGATACTTTCGACTTA
AAAGTGCCTGATACCCTTAAAAGA
Found at i:100065 original size:156 final size:154
Alignment explanation
Indices: 99670--100072 Score: 409
Period size: 154 Copynumber: 2.6 Consensus size: 154
99660 TAAAGGGCTT
* * * * * * ** * *
99670 AAAAAGAATTATAGATAGGATGAACCTACCCTAAATATCCATCTTTGGCATAAAAGCAAACCTAG
1 AAAAAGAATTACAAATAGGATGAACCTATCCTAAATACCCACCGTCAGCATAAAAGCGAACCCAG
* * *
99735 TGACAACCTAGGACTC-AGTTTTGGAAAATTATGAAATAACCCTTAAGGGATACCTTTGACTTAG
66 TGATAACCTAGGACTCGA-TTTTGAAAAATTATGAAATAACCCTTAAGGGATACCTTTGACTTAA
*
99799 AAGTGCCTGATACCCTTAAAAGATT
130 AAGTGCCTGATACCCTTAAAAGATC
* * * * **
99824 AAAAAGAATTACAGATAGGATGAACTTATTCTAAATACCCACCTTTGGCATAAAAGCGAACCCAG
1 AAAAAGAATTACAAATAGGATGAACCTATCCTAAATACCCACCGTCAGCATAAAAGCGAACCCAG
** *
99889 TGATAACCTAGGACTCGATTTTGAAAAATTATGAAA-ATGCCTTTAGGAGATA-CTTTCGACTTA
66 TGATAACCTAGGACTCGATTTTGAAAAATTATGAAATAACCCTTAAGG-GATACCTTT-GACTTA
*
99952 AAAGTGCCTGATACCTTTAAAAGGACTC
129 AAAGTGCCTGATACCCTTAAAA-GA-TC
* * * * * * * * * *
99980 AAAATGGATTATAAATGGGATGAGCCTATCCTAAATACCTATCGTCAGCATAAAAGTGGACTC-G
1 AAAAAGAATTACAAATAGGATGAACCTATCCTAAATACCCACCGTCAGCATAAAAGCGAACCCAG
*
100044 ATGATAACCTAAGACTCGATTTTGAAAAA
66 -TGATAACCTAGGACTCGATTTTGAAAAA
100073 ATTACAAAAA
Statistics
Matches: 210, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
153 12 0.06
154 119 0.57
155 4 0.02
156 75 0.36
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.27
Consensus pattern (154 bp):
AAAAAGAATTACAAATAGGATGAACCTATCCTAAATACCCACCGTCAGCATAAAAGCGAACCCAG
TGATAACCTAGGACTCGATTTTGAAAAATTATGAAATAACCCTTAAGGGATACCTTTGACTTAAA
AGTGCCTGATACCCTTAAAAGATC
Found at i:101375 original size:21 final size:21
Alignment explanation
Indices: 101350--101395 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
101340 TTGGCTAGAT
101350 TTCTCTTTTTCCTCTTTTTTC
1 TTCTCTTTTTCCTCTTTTTTC
** *
101371 TTCTCTTTTTTTTCTTTTTTT
1 TTCTCTTTTTCCTCTTTTTTC
101392 TTCT
1 TTCT
101396 TCACTTGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (21 bp):
TTCTCTTTTTCCTCTTTTTTC
Found at i:101391 original size:10 final size:10
Alignment explanation
Indices: 101362--101396 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
101352 CTCTTTTTCC
*
101362 TCTTTTTTCT
1 TCTTTTTTTT
101372 TCTCTTTTTTT
1 TCT-TTTTTTT
101383 TCTTTTTTTT
1 TCTTTTTTTT
101393 TCTT
1 TCTT
101397 CACTTGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:101541 original size:20 final size:20
Alignment explanation
Indices: 101499--101544 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
101489 CCCATGATAT
* *
101499 TTTTTTTTCTTTTTTTTGTA
1 TTTTTTTTATTTTTTTTGCA
101519 TTTTTTTTATTTTTTATT-CA
1 TTTTTTTTATTTTTT-TTGCA
101539 TTTTTT
1 TTTTTT
101545 ATGAGATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.09, C:0.04, G:0.02, T:0.85
Consensus pattern (20 bp):
TTTTTTTTATTTTTTTTGCA
Found at i:101546 original size:11 final size:10
Alignment explanation
Indices: 101499--101544 Score: 51
Period size: 9 Copynumber: 4.6 Consensus size: 10
101489 CCCATGATAT
101499 TTTTTTTTC-
1 TTTTTTTTCA
*
101508 TTTTTTTTGTA
1 TTTTTTTT-CA
101519 TTTTTTTT-A
1 TTTTTTTTCA
101528 TTTTTTATTCA
1 TTTTTT-TTCA
101539 TTTTTT
1 TTTTTT
101545 ATGAGATTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
9 15 0.47
10 2 0.06
11 15 0.47
ACGTcount: A:0.09, C:0.04, G:0.02, T:0.85
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:103519 original size:85 final size:84
Alignment explanation
Indices: 103330--103753 Score: 327
Period size: 85 Copynumber: 5.1 Consensus size: 84
103320 AGGCAATTGG
* * * * ** * *
103330 GTCAACAAAAGATAAAAGGAGTTACTCGGGACTAAGCCGATAGGTAAGCAAAGGATAAAAAAGGT
1 GTCAACAAAAGATAAAAGAATTTACCCGAGACTAAGTTGACAGGTAAACAAAGGAT-AAAAAGGT
*
103395 TGACTAGA-ATTGAATCTACAA
65 TGA-TAGAGATT-AAACTACAA
* * *
103416 GTCAACAGAAGATAAAAGAATTTACCCGAGACTAAGTTGACAGGTAAATAAAGGATAAAGAGGTT
1 GTCAACAAAAGATAAAAGAATTTACCCGAGACTAAGTTGACAGGTAAACAAAGGATAAAAAGGTT
*
103481 GATAGGGATTAAACTAACAA
66 GATAGAGATTAAACT-ACAA
* * * * * *
103501 GTCAACAAAGGATAAAAGAATTTATCC-AGGATTAAGTCGACAGGTAAACAAGGGATGAAATA-G
1 GTCAACAAAAGATAAAAGAATTTACCCGA-GACTAAGTTGACAGGTAAACAAAGGAT-AAAAAGG
* *
103564 TTGATCA-AGACTGAACTGACAA
64 TTGAT-AGAGATTAAACT-ACAA
* * * * *
103586 GTCAACAAAAGAT-AAGGAGATTTACCCCG-GACTAAATTAATAGGTAAACAAAGGATAAAAACG
1 GTCAACAAAAGATAAAAGA-ATTTA-CCCGAGACTAAGTTGACAGGTAAACAAAGGATAAAAAGG
*
103649 TTGATCGAGATTAAAC--C--
64 TTGATAGAGATTAAACTACAA
* * * * *
103666 G---AC-AAAGTATAAAAGGATTTACTCAAGACTAAGCTGACAAGTAAACAAAGGATAAAAAGGT
1 GTCAACAAAAG-ATAAAAGAATTTACCCGAGACTAAGTTGACAGGTAAACAAAGGATAAAAAGGT
* * *
103727 TGATCGAGATTGAACCGACAA
65 TGATAGAGATT-AAACTACAA
103748 GTCAAC
1 GTCAAC
103754 TAATTAAAAG
Statistics
Matches: 268, Mismatches: 49, Indels: 43
0.74 0.14 0.12
Matches are distributed among these distances:
76 6 0.02
77 49 0.18
78 6 0.02
80 2 0.01
82 2 0.01
84 16 0.06
85 134 0.50
86 53 0.20
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.19
Consensus pattern (84 bp):
GTCAACAAAAGATAAAAGAATTTACCCGAGACTAAGTTGACAGGTAAACAAAGGATAAAAAGGTT
GATAGAGATTAAACTACAA
Found at i:104001 original size:48 final size:47
Alignment explanation
Indices: 103832--104189 Score: 270
Period size: 47 Copynumber: 7.6 Consensus size: 47
103822 TAATTGATAC
* * *
103832 AGTCAAACGATGGT-AAAAAGAGTTTGA-TCAAGCCCTAACGCCAATAT
1 AGTCAAAC-AAGGTGAAAAAGAGTTTGACT-AGGTCCTAACGCCAATAT
* * *
103879 AGTCAAACGAAGGCGGAATAAGA--TTGACTAAGG--CTAACGCCAATAC
1 AGTCAAAC-AAGG-TGAAAAAGAGTTTGACT-AGGTCCTAACGCCAATAT
* *
103925 AGTCAAACGAGTGTGAGAAAA-AGTTTGACTAGGTCCTAATGCCAATAT
1 AGTCAAACAAG-GTGA-AAAAGAGTTTGACTAGGTCCTAACGCCAATAT
* * * * * *
103973 AGCCAAATAAGGGTGAAAAAGAGCTTGACTAGG-ACTAATGTCAATAT
1 AGTCAAACAA-GGTGAAAAAGAGTTTGACTAGGTCCTAACGCCAATAT
* * * * *
104020 AGTCAAATGAAGGCGAGGAAA-AGTTTGACTAGGTCCTAACGTCAATAC
1 AGTCAAA-CAAGGTGA-AAAAGAGTTTGACTAGGTCCTAACGCCAATAT
*
104068 AATCAAACAAAGGTGAAAAAGAGTTTGACTAGGTCCTAACGCCAATAT
1 AGTCAAAC-AAGGTGAAAAAGAGTTTGACTAGGTCCTAACGCCAATAT
* * * * *
104116 AGTTAAACAACGGTG-AAAAGAGTTTGACCAAGTCCTAACACCAATAC
1 AGTCAAACAA-GGTGAAAAAGAGTTTGACTAGGTCCTAACGCCAATAT
* * *
104163 AGTTAAACGAGG-GTAAAAATAGTTTGA
1 AGTCAAACAAGGTG-AAAAAGAGTTTGA
104190 TGAAAAGTGA
Statistics
Matches: 253, Mismatches: 39, Indels: 38
0.77 0.12 0.12
Matches are distributed among these distances:
45 6 0.02
46 29 0.11
47 112 0.44
48 99 0.39
49 7 0.03
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (47 bp):
AGTCAAACAAGGTGAAAAAGAGTTTGACTAGGTCCTAACGCCAATAT
Found at i:104019 original size:47 final size:47
Alignment explanation
Indices: 103919--104153 Score: 208
Period size: 48 Copynumber: 4.9 Consensus size: 47
103909 AGGCTAACGC
* ** *
103919 CAATACAGTCAAACGAGTGTGAGAAAA-AGTTTGACTAGGTCCTAATGC
1 CAATATAGTCAAATAAG-GTGA-AAAAGAGTTTGACTAGGTCCTAATGT
* * *
103967 CAATATAGCCAAATAAGGGTGAAAAAGAGCTTGACTAGG-ACTAATGT
1 CAATATAGTCAAATAA-GGTGAAAAAGAGTTTGACTAGGTCCTAATGT
* * *
104014 CAATATAGTCAAATGAAGGCGAGGAAA-AGTTTGACTAGGTCCTAACGT
1 CAATATAGTCAAAT-AAGGTGA-AAAAGAGTTTGACTAGGTCCTAATGT
* * * * *
104062 CAATACAATCAAACAAAGGTGAAAAAGAGTTTGACTAGGTCCTAACGC
1 CAATATAGTCAAA-TAAGGTGAAAAAGAGTTTGACTAGGTCCTAATGT
* * * *
104110 CAATATAGTTAAACAACGGTG-AAAAGAGTTTGACCAAGTCCTAA
1 CAATATAGTCAAATAA-GGTGAAAAAGAGTTTGACTAGGTCCTAA
104154 CACCAATACA
Statistics
Matches: 154, Mismatches: 25, Indels: 17
0.79 0.13 0.09
Matches are distributed among these distances:
47 64 0.42
48 89 0.58
49 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (47 bp):
CAATATAGTCAAATAAGGTGAAAAAGAGTTTGACTAGGTCCTAATGT
Found at i:104103 original size:143 final size:140
Alignment explanation
Indices: 103873--104143 Score: 352
Period size: 143 Copynumber: 1.9 Consensus size: 140
103863 GCCCTAACGC
* *
103873 CAATATAGTCAAACGAAGGCGGAATAAGATTGACTAAGGCTAACGCCAATACAGTCAAACGAGTG
1 CAATATAGTCAAACGAAGGCGGAATAAGATTGACTAAGGCTAACGCCAATACAATCAAACAAGTG
* * *
103938 TGAGAAAAAGTTTGACTAGGTCCTAATGCCAATATAGCCAAATAAGGGTGAAAAAGAGCTTGACT
66 TGAGAAAAAGTTTGACTAGGTCCTAACGCCAATATAGCCAAACAACGGTG-AAAAGAGCTTGACT
104003 AGGACTAATGT
130 AGGACTAATGT
* * *
104014 CAATATAGTCAAATGAAGGCGAGGAA-AAGTTTGACT-AGGTCCTAACGTCAATACAATCAAACA
1 CAATATAGTCAAACGAAGGC--GGAATAAGATTGACTAAGG--CTAACGCCAATACAATCAAAC-
** *
104077 AAG-GTGA-AAAAGAGTTTGACTAGGTCCTAACGCCAATATAGTTAAACAACGGTGAAAAGAGTT
61 AAGTGTGAGAAAA-AGTTTGACTAGGTCCTAACGCCAATATAGCCAAACAACGGTGAAAAGAGCT
104140 TGAC
125 TGAC
104144 CAAGTCCTAA
Statistics
Matches: 113, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
141 22 0.19
142 25 0.22
143 64 0.57
144 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (140 bp):
CAATATAGTCAAACGAAGGCGGAATAAGATTGACTAAGGCTAACGCCAATACAATCAAACAAGTG
TGAGAAAAAGTTTGACTAGGTCCTAACGCCAATATAGCCAAACAACGGTGAAAAGAGCTTGACTA
GGACTAATGT
Found at i:104140 original size:95 final size:93
Alignment explanation
Indices: 103865--104189 Score: 302
Period size: 95 Copynumber: 3.5 Consensus size: 93
103855 TTGATCAAGC
* * *
103865 CCTAACGCCAATATAGTCAAACGAAGGCG-GAATAAGA--TTGACTAAGG-CTAACGCCAATACA
1 CCTAACGCCAATACAGTCAAAC-AAGG-GTGAAAAAGAGTTTGACT-AGGACTAACGCCAATATA
*
103926 GTCAAACGAGTGTGAGAAAAAGTTTGACTAGGT
63 GTCAAACAAG-GTGAG-AAAAGTTTGACTAGGT
* * * * * * *
103959 CCTAATGCCAATATAGCCAAATAAGGGTGAAAAAGAGCTTGACTAGGACTAATGTCAATATAGTC
1 CCTAACGCCAATACAGTCAAACAAGGGTGAAAAAGAGTTTGACTAGGACTAACGCCAATATAGTC
* *
104024 AAATGAAGGCGAGGAAAAGTTTGACTAGGT
66 AAA-CAAGGTGA-GAAAAGTTTGACTAGGT
* * * *
104054 CCTAACGTCAATACAATCAAACAAAGGTGAAAAAGAGTTTGACTAGGTCCTAACGCCAATATAGT
1 CCTAACGCCAATACAGTCAAACAAGGGTGAAAAAGAGTTTGACTAGG-ACTAACGCCAATATAGT
* * *
104119 TAAACAACGGTGA-AAAGAGTTTGACCAAGT
65 CAAACAA-GGTGAGAAA-AGTTTGACTAGGT
* * * *
104149 CCTAACACCAATACAGTTAAACGAGGGT-AAAAATAGTTTGA
1 CCTAACGCCAATACAGTCAAACAAGGGTGAAAAAGAGTTTGA
104190 TGAAAAGTGA
Statistics
Matches: 189, Mismatches: 33, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
92 1 0.01
93 11 0.06
94 37 0.20
95 116 0.61
96 24 0.13
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.21
Consensus pattern (93 bp):
CCTAACGCCAATACAGTCAAACAAGGGTGAAAAAGAGTTTGACTAGGACTAACGCCAATATAGTC
AAACAAGGTGAGAAAAGTTTGACTAGGT
Found at i:106030 original size:166 final size:165
Alignment explanation
Indices: 105858--106629 Score: 806
Period size: 166 Copynumber: 4.6 Consensus size: 165
105848 CACTTTTTAT
* * *
105858 TTTTTCCTTGAAACTCTCATTTTTTTGAAATATGGTGTTTTCTACTCCGTAAATTTTTTCGAGGG
1 TTTTTCCTTGAAACTCTCCTTTTTTTAAAATACGGTGTTTTCTACTCCGTAAATTTTTT-GAGGG
* * * * *
105923 GATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAATATTATCATTTATCTCATACTAATTTAG
65 GATTTTTCTCTGTTTTCAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAG
*
105988 TTTTCTAAAATTAATTCATCTTCATGAGTTTTTGAA
130 TTTTCAAAAATTAATTCATCTTCATGAGTTTTTGAA
* * * *
106024 TTTTTCCTT-AAAATTTCCCTTTTTCTAAAATATGGTGTTTTCTACTCCGTAAATTTTTTTGAGG
1 TTTTTCCTTGAAACTCT-CCTTTTTTTAAAATACGGTGTTTTCTACTCCGTAAA-TTTTTTGAGG
* * * * * *
106088 GGCTTTTTCT-TGGTTTTTAATTTTTAAATTTCATGAAATATTATTATTTATTTCACATTAAATC
64 GGATTTTTCTCT-GTTTTCAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTC
*
106152 AGTTTTCAAAAATTAATTGATCTTCATGAGTTTTTGAA
128 AGTTTTCAAAAATTAATTCATCTTCATGAGTTTTTGAA
* * ** *
106190 TTTTTTCCTTGAAATTCTCCTTTTTTTCAAAACACCATGTTTTCTACTTCGTAAATTTTTTGAGG
1 -TTTTTCCTTGAAACTCTCCTTTTTTT-AAAATACGGTGTTTTCTACTCCGTAAATTTTTTGAGG
* * *
106255 GGATTTTTCT-TGTTTTTTTAATTTTTAAATTTCATCAAATATTATTATTTATTTTATATTAATT
64 GGATTTTTCTCTG--TTTTCAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATT
* * * * *
106319 CATTTTTCAAAAATTCATTCATTTTCATAAG-TTTTGGA
127 CAGTTTTCAAAAATTAATTCATCTTCATGAGTTTTTGAA
** * * *
106357 TTTTTTGTTGAAACTCCCCTTTTTCTAAAATACGGTGTTTTCTACTCCATAAATTTTTTCGAGGG
1 TTTTTCCTTGAAACTCTCCTTTTTTTAAAATACGGTGTTTTCTACTCCGTAAATTTTTT-GAGGG
* * * *
106422 AATTTTTCTCTGTTTTCAATTTTTAAAATTCATAAAATATCATTATTTGA-TTCCTATTAATT-A
65 GATTTTTCTCTGTTTTCAATTTTTAAAATTCATCAAATATTATTATTT-ATTTCATATTAATTCA
* * * *
106485 TGTTTTAAAAAATTAATTCATTTTCATGAGTTTTGGAT
129 -GTTTTCAAAAATTAATTCATCTTCATGAGTTTTTGAA
** * * * * * * * *
106523 TTTTTTGTTGAAATTTTCCTTTTTTTTGAGAA-ACCGAGTTTTCTTCTCTGTAAAATTTTTTGGG
1 TTTTTCCTTGAAACTCTCC-TTTTTTT-AAAATACGGTGTTTTCTACTCCGT-AAATTTTTTGAG
* * *
106587 GGGATTTTTCT-TGGTTTCGAA-TTTTAAAGACTCATCTAATATT
63 GGGATTTTTCTCTGTTTTC-AATTTTTAAA-ATTCATCAAATATT
106630 GTCATTGAAT
Statistics
Matches: 510, Mismatches: 78, Indels: 35
0.82 0.13 0.06
Matches are distributed among these distances:
164 1 0.00
165 100 0.20
166 203 0.40
167 95 0.19
168 111 0.22
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.51
Consensus pattern (165 bp):
TTTTTCCTTGAAACTCTCCTTTTTTTAAAATACGGTGTTTTCTACTCCGTAAATTTTTTGAGGGG
ATTTTTCTCTGTTTTCAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGT
TTTCAAAAATTAATTCATCTTCATGAGTTTTTGAA
Found at i:106396 original size:333 final size:330
Alignment explanation
Indices: 105856--106635 Score: 894
Period size: 333 Copynumber: 2.3 Consensus size: 330
105846 TTCACTTTTT
* * * * * * *
105856 ATTTTTTCCTTGAAACTCTCATTTTTTTGAAATATGGTGTTTTCTACTCCGTAAATTTTTTCGAG
1 ATTTTTTCCTTGAAATTCTCCTTTTTTTAAAACACGATGTTTTCTACTTCGTAAATTTTTT-GAG
* *
105921 GGGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAATATTATCATTTATCTCATACTAATTT
65 GGGATTTTTCT-TGTTTTCAATTTTTAAAATTCATCAAATATTATCATTTATCTCATACTAATTC
* * * *
105986 AGTTTTCTAAAATTAATTCATCTTCATGAGTTTTTGAATTTTTCCTTAAAATTTCCCTTTTTCTA
129 AGTTTTCAAAAATTAATTCATCTTCATAAGTTTTTGAATTTTTCCTTAAAACTCCCCTTTTTCTA
* * * ** *
106051 AAATATGGTGTTTTCTACTCCGTAAATTTTTTTGAGGGGCTTTTTCT-TGGTTTTTAATTTTTAA
194 AAATACGGTGTTTTCTACTCCATAAATTTTTTCGAGGGAATTTTTCTCT-GTTTTCAATTTTTAA
* * * * *
106115 ATTTCATGAAATATTATTATTT-ATTTCAC-ATTAAATCA-GTTTTCAAAAATTAATTGATCTTC
258 AATTCATAAAATATCATTATTTGA-TTC-CTATT-AATCATGTTTTAAAAAATTAATTCATCTTC
106177 ATGAGTTTTTGA
320 ATGAG-TTTTGA
*
106189 ATTTTTTCCTTGAAATTCTCCTTTTTTTCAAAACACCATGTTTTCTACTTCGTAAATTTTTTGAG
1 ATTTTTTCCTTGAAATTCTCCTTTTTTT-AAAACACGATGTTTTCTACTTCGTAAATTTTTTGAG
* * * * * *
106254 GGGATTTTTCTTGTTTTTTTAATTTTTAAATTTCATCAAATATTATTATTTATTTTATATTAATT
65 GGGATTTTTCTTG--TTTTCAATTTTTAAAATTCATCAAATATTATCATTTATCTCATACTAATT
* * * * ** *
106319 CATTTTTCAAAAATTCATTCATTTTCATAAG-TTTTGGATTTTTTGTTGAAACTCCCCTTTTTCT
128 CAGTTTTCAAAAATTAATTCATCTTCATAAGTTTTTGAATTTTTCCTTAAAACTCCCCTTTTTCT
106383 AAAATACGGTGTTTTCTACTCCATAAATTTTTTCGAGGGAATTTTTCTCTGTTTTCAATTTTTAA
193 AAAATACGGTGTTTTCTACTCCATAAATTTTTTCGAGGGAATTTTTCTCTGTTTTCAATTTTTAA
* *
106448 AATTCATAAAATATCATTATTTGATTCCTATTAATTATGTTTTAAAAAATTAATTCATTTTCATG
258 AATTCATAAAATATCATTATTTGATTCCTATTAATCATGTTTTAAAAAATTAATTCATCTTCATG
*
106513 AGTTTTGG
323 AGTTTTGA
** * *
106521 ATTTTTTTGTTGAAATTTTCCTTTTTTTTGAGAAAC-CGA-GTTTTCTTC-TCTGTAAAATTTTT
1 ATTTTTTCCTTGAAATTCTCC-TTTTTTT-A-AAACACGATGTTTTCTACTTC-GT-AAATTTTT
* * * * *
106583 TGGGGGGATTTTTCTTGGTTTCGAA-TTTTAAAGACTCATCTAATATTGTCATT
61 TGAGGGGATTTTTCTTGTTTTC-AATTTTTAAA-ATTCATCAAATATTATCATT
106636 GAATTCCAAT
Statistics
Matches: 379, Mismatches: 55, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
331 12 0.03
332 56 0.15
333 209 0.55
334 102 0.27
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.51
Consensus pattern (330 bp):
ATTTTTTCCTTGAAATTCTCCTTTTTTTAAAACACGATGTTTTCTACTTCGTAAATTTTTTGAGG
GGATTTTTCTTGTTTTCAATTTTTAAAATTCATCAAATATTATCATTTATCTCATACTAATTCAG
TTTTCAAAAATTAATTCATCTTCATAAGTTTTTGAATTTTTCCTTAAAACTCCCCTTTTTCTAAA
ATACGGTGTTTTCTACTCCATAAATTTTTTCGAGGGAATTTTTCTCTGTTTTCAATTTTTAAAAT
TCATAAAATATCATTATTTGATTCCTATTAATCATGTTTTAAAAAATTAATTCATCTTCATGAGT
TTTGA
Found at i:108104 original size:16 final size:18
Alignment explanation
Indices: 108075--108111 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
108065 GAAATTTTCA
108075 AAAATAATAATAAT-AAT
1 AAAATAATAATAATAAAT
108092 AAAATAA-AATAATAAAT
1 AAAATAATAATAATAAAT
108109 AAA
1 AAA
108112 TTCTCTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAATAATAATAATAAAT
Found at i:109315 original size:154 final size:152
Alignment explanation
Indices: 108756--109688 Score: 627
Period size: 157 Copynumber: 6.1 Consensus size: 152
108746 AAATGTGGGT
* * * * *
108756 ATTTAGGATAGGTTCA-CCGCATCTATATCCTCTCTAAGTCCTTT-AGGGTTACCAAGATACTTT
1 ATTTAGGATAGGTTCATCC-CATTTCTATCCTTTTTAAGTCCTTTAAGGG-TACCAGGATACTTT
* * * * * * * * * *
108819 CAAGTTGAAGGTGTACCCATAGGGGTATTTTCGTAATTTTTTAAAACCAACTCGTAGGTTATCAC
64 CACGTCGAAGATAT-CCCCTAAGGGCATTTTCGTAATTTTTTAGAA-CAAGTCCTAGGTTATCAC
* * *
108884 CGGGTCTGCTTTTATGCCAAATGTAG
127 CAGGTCTGCTTTTATGCCAAAGGTGG
*
108910 ATATCTAGGATAGGTTCATCTCATATAT-TATCCTTTTTAAGTCCTTTAAGGGTACCAAGG-TAC
1 AT-T-TAGGATAGGTTCATCCCAT-T-TCTATCCTTTTTAAGTCCTTTAAGGGTACC-AGGATAC
* * * *
108973 TTTCACGTCGAAAATATCTCCTAAGGGCATTTTCATAATTTTTTTAGAATCAAGTCTTAGGTTAT
61 TTTCACGTCGAAGATATCCCCTAAGGGCATTTTCGTAA-TTTTTTAGAA-CAAGTCCTAGGTTAT
* * *
109038 CATCAGATCTGCTTTTATGCTAAAGGTGGG
124 CACCAGGTCTGCTTTTATGCCAAAGGT-GG
* * * * * * *
109068 TATTTAGGATAGGTTAATTCCTTTTATAGTCCCTTTTATA-TCCTTGAGGGGTACC-GAGATACT
1 -ATTTAGGATAGGTTCATCCCATTTCTA-TCCTTTTTA-AGTCCTTTAAGGGTACCAG-GATACT
* * * **
109131 TTCACATCGACA-ATATCCCCTAGGGGCATTTTCGTAATTTTTTAGAACAAACTCCTAGGTCGTC
62 TTCACGTCGA-AGATATCCCCTAAGGGCATTTTCGTAATTTTTTAGAAC-AAGTCCTAGGTTATC
* *
109195 ACTAGGTCTGCTTTTATGCCGAAGGTGG
125 ACCAGGTCTGCTTTTATGCCAAAGGTGG
** * * *
109223 CATTTAGGATAGGTTCATCCCATTTCTATTATTTTTAAGTCCTTTAAGGTTACTAGGATACTTTT
1 -ATTTAGGATAGGTTCATCCCATTTCTATCCTTTTTAAGTCCTTTAAGGGTACCAGGATACTTTC
* * * * * *
109288 ATGTCGAAGCTATCCCCTAAGGGCATTTTGGTAATTCTCTT-GAACCAAGTCCTAGGCTGTCACC
65 ACGTCGAAGATATCCCCTAAGGGCATTTTCGTAATT-TTTTAGAA-CAAGTCCTAGGTTATCACC
* * * *
109352 GAGTTC-GCTTTCATGCAAAATGTGG
128 -AGGTCTGCTTTTATGCCAAAGGTGG
* * *
109377 ATATT----TAGG---AT---ATTTTTATCCTTTTTAAGTCCTTTAAGGGTATC-GAATAC-TTC
1 AT-TTAGGATAGGTTCATCCCATTTCTATCCTTTTTAAGTCCTTTAAGGGTACCAGGATACTTTC
* * * * * *
109430 TACGTCAAAGATATCCCTTAGGGGCATTTTCGTAAATTTTCAGAATCGAGTCCTAGGTTATCACC
65 -ACGTCGAAGATATCCCCTAAGGGCATTTTCGTAATTTTTTAGAA-CAAGTCCTAGGTTATCACC
** **
109495 AGGTCTATTTTTATG-CGTAGGTGGG
128 AGGTCTGCTTTTATGCCAAAGGT-GG
* * * * *
109520 CATTTAGGATATGTTCATCCCATCTCTAGT-CTTTTTAAGTTCTTT-AGGGTTCCCGAGATACTT
1 -ATTTAGGATAGGTTCATCCCATTTCTA-TCCTTTTTAAGTCCTTTAAGGGTACCAG-GATACTT
* * * * * * *
109583 TTACGTCGAAGGTATCCCTTAAGGGTATTTTGGTAATTTTTTTAGAATCGAGTCCAAGGTTATCA
63 TCACGTCGAAGATATCCCCTAAGGGCATTTTCGTAA-TTTTTTAGAA-CAAGTCCTAGGTTATCA
* * * ***
109648 CCGGGTTTACTTTTATGTTGAAGGTGGG
126 CCAGGTCTGCTTTTATGCCAAAGGT-GG
109676 TATTTAGGATAGG
1 -ATTTAGGATAGG
109689 CTCACCTTTT
Statistics
Matches: 609, Mismatches: 125, Indels: 88
0.74 0.15 0.11
Matches are distributed among these distances:
142 11 0.02
143 63 0.10
144 29 0.05
147 5 0.01
150 6 0.01
152 6 0.01
153 24 0.04
154 124 0.20
155 79 0.13
156 97 0.16
157 152 0.25
158 11 0.02
159 2 0.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (152 bp):
ATTTAGGATAGGTTCATCCCATTTCTATCCTTTTTAAGTCCTTTAAGGGTACCAGGATACTTTCA
CGTCGAAGATATCCCCTAAGGGCATTTTCGTAATTTTTTAGAACAAGTCCTAGGTTATCACCAGG
TCTGCTTTTATGCCAAAGGTGG
Found at i:109699 original size:297 final size:297
Alignment explanation
Indices: 109143--109700 Score: 665
Period size: 297 Copynumber: 1.9 Consensus size: 297
109133 CACATCGACA
* * * * *
109143 ATATCCCCTAGGGGCATTTTCGTAATTTTTTAGAACAAACTCCTAGGTCGTCACTAGGTCTGCTT
1 ATATCCCCTAGGGGCATTTTCGTAAATTTTCAGAACAAACTCCTAGGTCATCACCAGGTCTACTT
* *
109208 TTATGCCGAAGGTGGCATTTAGGATAGGTTCATCCCATTTCTATTATTTTTAAGTCCTTTAAGGT
66 TTATGCCGAAGGTGGCATTTAGGATAGGTTCATCCCATCTCTAGTATTTTTAAGTCCTTTAAGGT
* *
109273 TACTAGGATACTTTTATGTCGAAGCTATCCCCTAAGGGCATTTTGGTAATTCTCTTGAACCAAGT
131 TACGAGGATACTTTTACGTCGAAGCTATCCCCTAAGGGCATTTTGGTAATTCTCTTGAACCAAGT
* * * * *** *
109338 CCTAGGCTGTCACCGAGTTCGCTTTCATGCAAAATGTGGATATTTAGGATATTTTTATCCTTTTT
196 CCAAGGCTATCACCGAGTTCACTTTCATGCAAAAGGTGGATATTTAGGATAGGCTCATCCTTTTT
109403 AAGTCCTTTAAGGGTATCGAATACTTCTACGTCAAAG
261 AAGTCCTTTAAGGGTATCGAATACTTCTACGTCAAAG
* * * * *
109440 ATATCCCTTAGGGGCATTTTCGTAAATTTTCAGAATC-GAGTCCTAGGTTATCACCAGGTCTATT
1 ATATCCCCTAGGGGCATTTTCGTAAATTTTCAGAA-CAAACTCCTAGGTCATCACCAGGTCTACT
* * * * *
109504 TTTATG-CGTAGGTGGGCATTTAGGATATGTTCATCCCATCTCTAGTCTTTTTAAGTTCTTTAGG
65 TTTATGCCGAAGGT-GGCATTTAGGATAGGTTCATCCCATCTCTAGTATTTTTAAGTCCTTTAAG
* * * * * * *
109568 GTTCCCGA-GATACTTTTACGTCGAAGGTATCCCTTAAGGGTATTTTGGTAATTTTTTTAGAATC
129 GTT-ACGAGGATACTTTTACGTCGAAGCTATCCCCTAAGGGCATTTTGGTAATTCTCTT-GAACC
* * * * * *** *
109632 GAGTCCAAGGTTATCACCGGGTTTACTTTTATGTTGAAGGTGGGTATTTAGGATAGGCTCA-CCT
192 AAGTCCAAGGCTATCACCGAGTTCACTTTCATGCAAAAGGTGGATATTTAGGATAGGCTCATCCT
109696 TTTTA
257 TTTTA
109701 TTAATTTTTC
Statistics
Matches: 214, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
296 6 0.03
297 157 0.73
298 51 0.24
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (297 bp):
ATATCCCCTAGGGGCATTTTCGTAAATTTTCAGAACAAACTCCTAGGTCATCACCAGGTCTACTT
TTATGCCGAAGGTGGCATTTAGGATAGGTTCATCCCATCTCTAGTATTTTTAAGTCCTTTAAGGT
TACGAGGATACTTTTACGTCGAAGCTATCCCCTAAGGGCATTTTGGTAATTCTCTTGAACCAAGT
CCAAGGCTATCACCGAGTTCACTTTCATGCAAAAGGTGGATATTTAGGATAGGCTCATCCTTTTT
AAGTCCTTTAAGGGTATCGAATACTTCTACGTCAAAG
Found at i:109709 original size:154 final size:152
Alignment explanation
Indices: 109398--109694 Score: 355
Period size: 155 Copynumber: 1.9 Consensus size: 152
109388 ATTTTTATCC
*
109398 TTTTTAAGTCCTTTAAGGGTATCGAATACTTCTACGTCAAAGATATCCCTTAGGGGCATTTTCGT
1 TTTTTAAGTCCTTTAAGGGTATCGAATACTTCTACGTCAAAGATATCCCTTAAGGGCATTTTCGT
* * *
109463 AAATTTTCAGAATCGAGTCCTAGGTTATCACCAGGTCTATTTTTATGCGTAGGTGGGCATTTAGG
66 AAATTTTCAGAATCGAGTCCAAGGTTATCACCAGGTCTACTTTTATGCGAAGGTGGGCATTTAGG
* * *
109528 ATATGTTCATCCCATCTCTAGTC
131 ATAGGCTCA-CCCATCTCTAGTA
* * * * *
109551 TTTTTAAGTTCTTT-AGGGT-TCCCGAGATACTTTTACGTCGAAGGTATCCCTTAAGGGTATTTT
1 TTTTTAAGTCCTTTAAGGGTAT--CGA-ATACTTCTACGTCAAAGATATCCCTTAAGGGCATTTT
* * * * * * *
109614 GGTAATTTTTTTAGAATCGAGTCCAAGGTTATCACCGGGTTTACTTTTATGTTGAAGGTGGGTAT
63 CGTAA-ATTTTCAGAATCGAGTCCAAGGTTATCACCAGGTCTACTTTTATG-CGAAGGTGGGCAT
109679 TTAGGATAGGCTCACC
126 TTAGGATAGGCTCACC
109695 TTTTTATTAA
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
151 1 0.01
152 5 0.04
153 16 0.13
154 36 0.30
155 41 0.34
156 22 0.18
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (152 bp):
TTTTTAAGTCCTTTAAGGGTATCGAATACTTCTACGTCAAAGATATCCCTTAAGGGCATTTTCGT
AAATTTTCAGAATCGAGTCCAAGGTTATCACCAGGTCTACTTTTATGCGAAGGTGGGCATTTAGG
ATAGGCTCACCCATCTCTAGTA
Found at i:111742 original size:20 final size:20
Alignment explanation
Indices: 111717--111789 Score: 87
Period size: 20 Copynumber: 3.5 Consensus size: 20
111707 ATCTCATTTT
111717 TCACTGTTCATCAGTATTCA
1 TCACTGTTCATCAGTATTCA
111737 TCACTGTTCAT--GTATCGATACA
1 TCACTGTTCATCAGTAT---T-CA
*
111759 TCACTGTTCATCACTATTCA
1 TCACTGTTCATCAGTATTCA
111779 TCACTGTTCAT
1 TCACTGTTCAT
111790 GTATCGATAC
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
18 4 0.09
20 24 0.52
21 2 0.04
22 13 0.28
24 3 0.07
ACGTcount: A:0.25, C:0.26, G:0.10, T:0.40
Consensus pattern (20 bp):
TCACTGTTCATCAGTATTCA
Found at i:111746 original size:10 final size:10
Alignment explanation
Indices: 111717--111789 Score: 67
Period size: 10 Copynumber: 7.1 Consensus size: 10
111707 ATCTCATTTT
111717 TCACTGTTCA
1 TCACTGTTCA
* *
111727 TCAGTATTCA
1 TCACTGTTCA
111737 TCACTGTTCA
1 TCACTGTTCA
* *
111747 TGTA-TCGATACA
1 T-CACT-G-TTCA
111759 TCACTGTTCA
1 TCACTGTTCA
*
111769 TCACTATTCA
1 TCACTGTTCA
111779 TCACTGTTCA
1 TCACTGTTCA
111789 T
1 T
111790 GTATCGATAC
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
10 40 0.82
11 4 0.08
12 5 0.10
ACGTcount: A:0.25, C:0.26, G:0.10, T:0.40
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:111763 original size:22 final size:22
Alignment explanation
Indices: 111735--111811 Score: 104
Period size: 22 Copynumber: 3.6 Consensus size: 22
111725 CATCAGTATT
111735 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
* * *
111757 CATCACTGTTCAT-CA-CTATT
1 CATCACTGTTCATGTATCGATA
111777 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
*
111799 CAGCACTGTTCAT
1 CATCACTGTTCAT
111812 CACTGTACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 16 0.35
21 2 0.04
22 28 0.61
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:111777 original size:42 final size:42
Alignment explanation
Indices: 111717--111815 Score: 180
Period size: 42 Copynumber: 2.4 Consensus size: 42
111707 ATCTCATTTT
*
111717 TCACTGTTCATCAGTATTCATCACTGTTCATGTATCGATACA
1 TCACTGTTCATCACTATTCATCACTGTTCATGTATCGATACA
111759 TCACTGTTCATCACTATTCATCACTGTTCATGTATCGATACA
1 TCACTGTTCATCACTATTCATCACTGTTCATGTATCGATACA
*
111801 GCACTGTTCATCACT
1 TCACTGTTCATCACT
111816 GTACATTGAG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.37
Consensus pattern (42 bp):
TCACTGTTCATCACTATTCATCACTGTTCATGTATCGATACA
Found at i:111898 original size:22 final size:22
Alignment explanation
Indices: 111868--111910 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
111858 ATTCATCACA
*
111868 GTATCGATACAACACTATTCAT
1 GTATAGATACAACACTATTCAT
* *
111890 GTATAGATACATCACTGTTCA
1 GTATAGATACAACACTATTCA
111911 CAGTATTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (22 bp):
GTATAGATACAACACTATTCAT
Found at i:111995 original size:20 final size:20
Alignment explanation
Indices: 111951--111995 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
111941 TTTCAAATGC
111951 ATGTATCGATACATTATGAA
1 ATGTATCGATACATTATGAA
*
111971 TTGTATCGATACATTA-GAGA
1 ATGTATCGATACATTATGA-A
111991 ATGTA
1 ATGTA
111996 AGTGTGGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTATGAA
Found at i:112414 original size:34 final size:35
Alignment explanation
Indices: 112351--112417 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
112341 CTAAGTGATT
112351 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
112387 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
112418 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:113160 original size:20 final size:20
Alignment explanation
Indices: 113117--113160 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
113107 TTCGGGTGCA
* * *
113117 AAAGTTTATGGTTATCATAG
1 AAAGTCTATGGTAATCATAC
*
113137 AAAGTCTATGGTAATTATAC
1 AAAGTCTATGGTAATCATAC
113157 AAAG
1 AAAG
113161 GAAATAACGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (20 bp):
AAAGTCTATGGTAATCATAC
Found at i:118391 original size:20 final size:20
Alignment explanation
Indices: 118366--118484 Score: 71
Period size: 20 Copynumber: 6.0 Consensus size: 20
118356 CAATATAAAT
*
118366 AGTAAATGTATCGATACATA
1 AGTAAATGTATCCATACATA
*
118386 AGTAAATGTATCCATACATG
1 AGTAAATGTATCCATACATA
** * *
118406 CCTAAAATGTATCTATACAAA
1 AGT-AAATGTATCCATACATA
* ** * * *
118427 ACTACCCTGCATAC-TGCA-A
1 AGTA-AATGTATCCATACATA
* *
118446 AGGAAATGTATCGATACATA
1 AGTAAATGTATCCATACATA
*
118466 AGTAAAAGTATCCATACAT
1 AGTAAATGTATCCATACAT
118485 GCTTACAATT
Statistics
Matches: 70, Mismatches: 25, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
18 4 0.06
19 6 0.09
20 40 0.57
21 20 0.29
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.27
Consensus pattern (20 bp):
AGTAAATGTATCCATACATA
Found at i:119019 original size:22 final size:23
Alignment explanation
Indices: 118989--119036 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
118979 AAAACTTAAA
*
118989 AAACACTATT-CCATTGCTCTCC
1 AAACACTATTCCCATAGCTCTCC
*
119011 AAACTCTATTCCCATAGCTCTCC
1 AAACACTATTCCCATAGCTCTCC
119034 AAA
1 AAA
119037 GCCACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.31, C:0.35, G:0.04, T:0.29
Consensus pattern (23 bp):
AAACACTATTCCCATAGCTCTCC
Found at i:121096 original size:78 final size:78
Alignment explanation
Indices: 120900--121314 Score: 381
Period size: 78 Copynumber: 5.2 Consensus size: 78
120890 TGCCATCAGC
* * * *
120900 GATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCGTGA-TTTTATTTCCAAAATATCAA
1 GATACTCCAACCCCGTTTTTTTCGAGGGGATACTCCAACC-TCAGTTTTATTTCCAAAATATCGA
* *
120964 TTTTTTTTACCATTGGG
65 --TTTTTCACCA-TCGG
* * * * *
120981 GATACTTCAACCCTG-TTATTTCTGAAGGGATACTCCAACCTCAGTTTTATTTCTAAAATATCGA
1 GATACTCCAACCCCGTTTTTTTC-GAGGGGATACTCCAACCTCAGTTTTATTTCCAAAATATCGA
*
121045 TTTTTCACTATCGG
65 TTTTTCACCATCGG
* * * *
121059 GATACTCCAACCCCGTTTTTTTCAAGGGGATACTCCAACCCCATTTTTATTTCCAAAATGTCGAT
1 GATACTCCAACCCCGTTTTTTTCGAGGGGATACTCCAACCTCAGTTTTATTTCCAAAATATCGAT
*
121124 TTTCCACCATTAGGGATTCGGG
66 TTTTCACC-------A-TC-GG
* * * * * *
121146 GATACTCTAACCCTGTTATTTTCGAGGGGATACTCCAACCCCATTTTTATTTCCAAAATATTGAT
1 GATACTCCAACCCCGTTTTTTTCGAGGGGATACTCCAACCTCAGTTTTATTTCCAAAATATCGAT
121211 TTTTCACCATCGAG
66 TTTTCACCATCG-G
* * * *
121225 GATACTCCAACCCCATTGTTTTT-GAGGGGATACTTCAACCT--GTTTTTATTTTCGAAATATCG
1 GATACTCCAACCCCGTT-TTTTTCGAGGGGATACTCCAACCTCAG-TTTTATTTCCAAAATATCG
121287 ATTTTTCACCATCGGG
64 ATTTTTCACCATC-GG
*
121303 GATACTCTAACC
1 GATACTCCAACC
121315 TACTCCAACC
Statistics
Matches: 277, Mismatches: 41, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
78 100 0.36
79 48 0.17
80 11 0.04
81 47 0.17
85 1 0.00
86 2 0.01
87 68 0.25
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (78 bp):
GATACTCCAACCCCGTTTTTTTCGAGGGGATACTCCAACCTCAGTTTTATTTCCAAAATATCGAT
TTTTCACCATCGG
Found at i:121203 original size:87 final size:87
Alignment explanation
Indices: 121057--121220 Score: 265
Period size: 87 Copynumber: 1.9 Consensus size: 87
121047 TTTCACTATC
* *
121057 GGGATACTCCAACCCCGTTTTTTTCAAGGGGATACTCCAACCCCATTTTTATTTCCAAAATGTCG
1 GGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCATTTTTATTTCCAAAATATCG
121122 ATTTTCCACCATTAGGGATTCG
66 ATTTTCCACCATTAGGGATTCG
* * * *
121144 GGGATACTCTAACCCTGTTATTTTCGAGGGGATACTCCAACCCCATTTTTATTTCCAAAATATTG
1 GGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCATTTTTATTTCCAAAATATCG
*
121209 ATTTTTCACCAT
66 ATTTTCCACCAT
121221 CGAGGATACT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (87 bp):
GGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCATTTTTATTTCCAAAATATCG
ATTTTCCACCATTAGGGATTCG
Found at i:121214 original size:165 final size:165
Alignment explanation
Indices: 120978--121298 Score: 443
Period size: 165 Copynumber: 1.9 Consensus size: 165
120968 TTTTACCATT
* *
120978 GGGGATACTTCAACCCTGTTATTTCTGAAGGGATACTCCAACCTCAGTTTTATTTCTAAAATATC
1 GGGGATACTTCAACCCTGTTATTTCTGAAGGGATACTCCAACCCCAGTTTTATTTCCAAAATATC
* *
121043 GATTTTTCACTATCG-GGATACTCCAACCCCGTT-TTTTTCAAGGGGATACTCCAACCCCATTTT
66 GATTTTTCACCATCGAGGATACTCCAACCCCATTGTTTTT-AAGGGGATACTCCAA-CCCATTTT
*
121106 TATTTCCAAAATGTCGATTTTCCACCATTAGGGATTC
129 TATTTCCAAAATATCGATTTTCCACCATTAGGGATTC
* *
121143 GGGGATAC-TCTAACCCTGTTATTT-TCGAGGGGATACTCCAACCCCATTTTTATTTCCAAAATA
1 GGGGATACTTC-AACCCTGTTATTTCT-GAAGGGATACTCCAACCCCAGTTTTATTTCCAAAATA
* * * **
121206 TTGATTTTTCACCATCGAGGATACTCCAACCCCATTGTTTTTGAGGGGATACTTCAACCTGTTTT
64 TCGATTTTTCACCATCGAGGATACTCCAACCCCATTGTTTTTAAGGGGATACTCCAACCCATTTT
* * *
121271 TATTTTCGAAATATCGATTTTTCACCAT
129 TATTTCCAAAATATCGATTTTCCACCAT
121299 CGGGGATACT
Statistics
Matches: 137, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
164 3 0.02
165 99 0.72
166 30 0.22
167 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (165 bp):
GGGGATACTTCAACCCTGTTATTTCTGAAGGGATACTCCAACCCCAGTTTTATTTCCAAAATATC
GATTTTTCACCATCGAGGATACTCCAACCCCATTGTTTTTAAGGGGATACTCCAACCCATTTTTA
TTTCCAAAATATCGATTTTCCACCATTAGGGATTC
Found at i:121324 original size:60 final size:61
Alignment explanation
Indices: 121255--121375 Score: 172
Period size: 61 Copynumber: 2.0 Consensus size: 61
121245 TTTGAGGGGA
* *** * *
121255 TACTTCAA-CCTGTTTTTATTTTCGAAATATCGATTTTTCACCATCGGGGATACTCTAACC
1 TACTCCAACCCTGTTTTTATTTGAAAAATATCGATTTTTCACCATCGGAGATACTCCAACC
*
121315 TACTCCAACCCTGTTTTTATTTGAAAAATATTGATTTTTCACCATCGGAGATACTCCAACC
1 TACTCCAACCCTGTTTTTATTTGAAAAATATCGATTTTTCACCATCGGAGATACTCCAACC
121376 CCGTTATTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
60 7 0.13
61 46 0.87
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (61 bp):
TACTCCAACCCTGTTTTTATTTGAAAAATATCGATTTTTCACCATCGGAGATACTCCAACC
Found at i:121334 original size:139 final size:139
Alignment explanation
Indices: 121176--121453 Score: 391
Period size: 139 Copynumber: 2.0 Consensus size: 139
121166 TTCGAGGGGA
*
121176 TACTCCAACCCCATTTTTATTTCCAAAATATTGATTTTTCACCATC-GAGGATACTCCAACCCCA
1 TACTCCAACCCCATTTTTATTTCAAAAATATTGATTTTTCACCATCGGA-GATACTCCAACCCCA
* * ** * *
121240 TTGTTTTTGAGGGGATACTTCAA-CCTGTTTTTATTTTCG-AAATATCGATTTTTCACCATCGGG
65 TTATTTTCGAGGGGATAC-TCAACCCTAATTTTA-TTTCGAAAATATCAATTTTTCACCATCAGG
*
121303 GATACTCTAACC
128 GATACTCCAACC
** * *
121315 TACTCCAACCCTGTTTTTATTTGAAAAATATTGATTTTTCACCATCGGAGATACTCCAACCCCGT
1 TACTCCAACCCCATTTTTATTTCAAAAATATTGATTTTTCACCATCGGAGATACTCCAACCCCAT
*
121380 TATTTTCGAGGGGATACTCAACCCTAATTTTATTTCGAAAATATCAATTTTTCACCATCATGGAT
66 TATTTTCGAGGGGATACTCAACCCTAATTTTATTTCGAAAATATCAATTTTTCACCATCAGGGAT
121445 ACTCCAACC
131 ACTCCAACC
121454 CAATTATTTT
Statistics
Matches: 123, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
138 9 0.07
139 112 0.91
140 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (139 bp):
TACTCCAACCCCATTTTTATTTCAAAAATATTGATTTTTCACCATCGGAGATACTCCAACCCCAT
TATTTTCGAGGGGATACTCAACCCTAATTTTATTTCGAAAATATCAATTTTTCACCATCAGGGAT
ACTCCAACC
Found at i:121411 original size:78 final size:79
Alignment explanation
Indices: 121315--121749 Score: 363
Period size: 79 Copynumber: 5.5 Consensus size: 79
121305 TACTCTAACC
* ** *
121315 TACTCCAACCCTGTTTTTATTTGAAAAATATTGATTTTTCACCATCGGAGATACTCCAACCCCGT
1 TACTCCAACCCTGATTTTATTTCCAAAATATTAATTTTTCACCATCGGAGATACTCCAACCCCGT
121380 TATTTTCGAGGGGA
66 TATTTTCGAGGGGA
* * * * **
121394 TACT-CAACCCTAATTTTATTTCGAAAATATCAATTTTTCACCATCATG-GATACTCCAACCCAA
1 TACTCCAACCCTGATTTTATTTCCAAAATATTAATTTTTCACCATC-GGAGATACTCCAACCCCG
121457 TTATTTTCGAAGGGG-
65 TTATTTTCG-AGGGGA
* ** * * * *
121472 TACTCTAACCCTGATTTTATTTCCAAAATATCGATTTTTCACCATC-AAGGATACTCTAACCTCA
1 TACTCCAACCCTGATTTTATTTCCAAAATATTAATTTTTCACCATCGGA-GATACTCCAACCCCG
*
121536 TTATTTTCGAGAGGA
65 TTATTTTCGAGGGGA
* * * * * *
121551 T-CTCTAATCTTGATTTTATTTCTAAAATATTAA--ATTC-CTCATCTGTGGGATACTCCAACCC
1 TACTCCAACCCTGATTTTATTTCCAAAATATTAATTTTTCAC-CATC-G-GAGATACTCCAACCC
* *
121612 CGTTATTTTTGAGGGGG
63 CGTTATTTTCGAGGGGA
* * ** *
121629 TACTCCAA-CCTCGTTTTTATTTTCAAAATATTAAAATTTTT-GTC-TCGGAGATACTCTAACCC
1 TACTCCAACCCT-GATTTTATTTCCAAAATATT--AATTTTTCACCATCGGAGATACTCCAACCC
*
121691 CGTTATTTTTGAGGGGA
63 CGTTATTTTCGAGGGGA
* * * *
121708 TACTCCAA-CCTCATTTTTATCTCTAAAGTATTAAATTTTTCA
1 TACTCCAACCCTGA-TTTTATTTCCAAAATATT-AATTTTTCA
121750 TTGAGGGATG
Statistics
Matches: 288, Mismatches: 49, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
75 1 0.00
76 7 0.02
78 127 0.44
79 145 0.50
80 1 0.00
81 4 0.01
82 1 0.00
83 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (79 bp):
TACTCCAACCCTGATTTTATTTCCAAAATATTAATTTTTCACCATCGGAGATACTCCAACCCCGT
TATTTTCGAGGGGA
Found at i:121516 original size:79 final size:77
Alignment explanation
Indices: 121315--121580 Score: 304
Period size: 78 Copynumber: 3.4 Consensus size: 77
121305 TACTCTAACC
* * * * * *
121315 TACTCCAACCCTGTTTTTATTTGAAAAATATTGATTTTTCACCATC-GGAGATACTCCAACCCCG
1 TACTCTAACCCTGATTTTATTTCAAAAATATCGATTTTTCACCATCAAG-GATACTCCAA-CCCA
121379 TTATTTTCGAGGGG
64 TTATTTTCGAGGGG
* * * *
121393 ATACTC-AACCCTAATTTTATTTCGAAAATATCAATTTTTCACCATCATGGATACTCCAACCCAA
1 -TACTCTAACCCTGATTTTATTTCAAAAATATCGATTTTTCACCATCAAGGATACTCCAACCC-A
121457 TTATTTTCGAAGGGG
64 TTATTTTCG-AGGGG
* *
121472 TACTCTAACCCTGATTTTATTTCCAAAATATCGATTTTTCACCATCAAGGATACTCTAACCTCAT
1 TACTCTAACCCTGATTTTATTTCAAAAATATCGATTTTTCACCATCAAGGATACTCCAACC-CAT
*
121537 TATTTTCGAGAGG
65 TATTTTCGAGGGG
* * *
121550 -ATCTCTAATCTTGATTTTATTTCTAAAATAT
1 TA-CTCTAACCCTGATTTTATTTCAAAAATAT
121581 TAAATTCCTC
Statistics
Matches: 164, Mismatches: 17, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
77 4 0.02
78 88 0.54
79 71 0.43
80 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.38
Consensus pattern (77 bp):
TACTCTAACCCTGATTTTATTTCAAAAATATCGATTTTTCACCATCAAGGATACTCCAACCCATT
ATTTTCGAGGGG
Found at i:121758 original size:157 final size:156
Alignment explanation
Indices: 121315--121758 Score: 425
Period size: 157 Copynumber: 2.8 Consensus size: 156
121305 TACTCTAACC
* ** ** *
121315 TACTCCAACCCTGTTTTTATTTGAAAAATATTGATTTTTCACCATCGGAGATACTCCAACCCCGT
1 TACTCCAACCCTGATTTTATTTCCAAAATATAAATTTTTCACCATCGGAGATACTCTAACCCCGT
* * * * * *
121380 TATTTTCGAGGGGATACT-CAACCCTAATTTTATTTCGAAAATA-TCAATTTTTCACCATCATGG
66 TATTTTCGAGGGGATACTCCAA-CCTCATTTTATTTCTAAAATATTAAATTTTTCA--TTGAGGG
121443 ATACTCCAACCCAATTATTTTCGAAGGGG
128 ATACTCCAACCCAATTATTTTCGAAGGGG
* ** * * *
121472 TACTCTAACCCTGATTTTATTTCCAAAATATCGATTTTTCACCATC-AAGGATACTCTAACCTCA
1 TACTCCAACCCTGATTTTATTTCCAAAATATAAATTTTTCACCATCGGA-GATACTCTAACCCCG
* * * * ** *
121536 TTATTTTCGAGAGGAT-CTCTAATCTTGATTTTATTTCTAAAATATTAAATTCCTCATCTGTGGG
65 TTATTTTCGAGGGGATACTCCAA-CCTCATTTTATTTCTAAAATATTAAATTTTTCAT-TGAGGG
** * *
121600 ATACTCCAACCCCGTTATTTTTGAGGGGG
128 ATACTCCAACCCAATTATTTTCGAAGGGG
* * **
121629 TACTCCAA-CCTCGTTTTTATTTTCAAAATATTAAAATTTTT-GTC-TCGGAGATACTCTAACCC
1 TACTCCAACCCT-GATTTTATTTCCAAAATA-T-AAATTTTTCACCATCGGAGATACTCTAACCC
* * *
121691 CGTTATTTTTGAGGGGATACTCCAACCTCATTTTTATCTCTAAAGTATTAAATTTTTCATTGAGG
63 CGTTATTTTCGAGGGGATACTCCAACCTCA-TTTTATTTCTAAAATATTAAATTTTTCATTGAGG
121756 GAT
127 GAT
121759 GTACTCTAAC
Statistics
Matches: 231, Mismatches: 46, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
156 6 0.03
157 178 0.77
158 41 0.18
159 6 0.03
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (156 bp):
TACTCCAACCCTGATTTTATTTCCAAAATATAAATTTTTCACCATCGGAGATACTCTAACCCCGT
TATTTTCGAGGGGATACTCCAACCTCATTTTATTTCTAAAATATTAAATTTTTCATTGAGGGATA
CTCCAACCCAATTATTTTCGAAGGGG
Found at i:122998 original size:154 final size:155
Alignment explanation
Indices: 122715--123130 Score: 457
Period size: 154 Copynumber: 2.7 Consensus size: 155
122705 TCCTAAAGGG
* * *
122715 CTTAAAAA-TATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAATGCGAACT
1 CTTAAAAAGGATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCAAACT
* * * *
122779 CAGTGACAACCTAGGACTCGATTTTGGAAAATTATGAAAATATCCCTAAGGGATACCTTCAACTT
66 CAGTGACAACCAAAGACTCGATTTTGAAAAATTATGAAAATATCCCTAAAGGATACCTTCAACTT
* *
122844 AGAAGTGGCTGATACC-CTTAAAAAA
131 AGAAGTGCCCGATACCTC-TAAAAAA
* * * *
122869 TTTAAAAAGGATTATAGATGGGATAAACCTATCCTAAATACCCACCTTATG-CA-AAAAGTAAAC
1 CTTAAAAAGGATTATAGATGGGATGAACCTATCCTAAATACCCACCTT-CGACATAAAAGCAAAC
** * * * * **
122932 TTGGTGACCACCAAAGACTCGATTTTTAAAAATTAT-AAAAGT-GCTCTTAAAGGATACCTTTGA
65 TCAGTGACAACCAAAGACTCGATTTTGAAAAATTATGAAAA-TATC-CCTAAAGGATACCTTCAA
*
122995 CTTAGAAGTGCCCGATACCTCTAAAATA
128 CTTAGAAGTGCCCGATACCTCTAAAAAA
* * * * **
123023 CTTAAAAAGGATTACAGATGGGATGAACCTATCCTAAATACCTACCTTTGGCATAAAAGCGGACT
1 CTTAAAAAGGATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCAAACT
* ** *
123088 CGGTGACAACTTAGGACTCGATTTTGGAAAAATTATGAAAATA
66 CAGTGACAACCAAAGACTCGATTTT-GAAAAATTATGAAAATA
123131 CCTATAGGGG
Statistics
Matches: 217, Mismatches: 35, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
153 7 0.03
154 127 0.59
155 68 0.31
156 11 0.05
157 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (155 bp):
CTTAAAAAGGATTATAGATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCAAACT
CAGTGACAACCAAAGACTCGATTTTGAAAAATTATGAAAATATCCCTAAAGGATACCTTCAACTT
AGAAGTGCCCGATACCTCTAAAAAA
Found at i:123603 original size:15 final size:16
Alignment explanation
Indices: 123576--123606 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
123566 TATTAATTAT
123576 TATTTTGTTTATTTTA
1 TATTTTGTTTATTTTA
123592 TATTTT-TTTATTTTA
1 TATTTTGTTTATTTTA
123607 AAAAATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TATTTTGTTTATTTTA
Found at i:132269 original size:13 final size:13
Alignment explanation
Indices: 132251--132276 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
132241 TACACCAAGT
132251 ATGTATCGATACA
1 ATGTATCGATACA
132264 ATGTATCGATACA
1 ATGTATCGATACA
132277 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:132274 original size:32 final size:33
Alignment explanation
Indices: 132233--132296 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
132223 TAGCCAAACT
* **
132233 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
132265 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
132297 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:134521 original size:21 final size:21
Alignment explanation
Indices: 134488--134537 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
134478 TTGCAAGTTG
*
134488 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
134510 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
134531 AAATAAA
1 AAATAAA
134538 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:136350 original size:15 final size:15
Alignment explanation
Indices: 136330--136359 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
136320 AAAATGTCCT
*
136330 AAAATGAGGAAGCTC
1 AAAATGAAGAAGCTC
136345 AAAATGAAGAAGCTC
1 AAAATGAAGAAGCTC
136360 CAAACGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.23, T:0.13
Consensus pattern (15 bp):
AAAATGAAGAAGCTC
Found at i:138626 original size:20 final size:20
Alignment explanation
Indices: 138583--138628 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
138573 AAATCTTTTG
138583 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
138604 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
138624 CAAAA
1 CAAAA
138629 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:141030 original size:25 final size:25
Alignment explanation
Indices: 140985--141036 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
140975 GCCAAACTTG
* *
140985 TATCGATACACCAAGTATGTATCGA
1 TATCGATACACAAAATATGTATCGA
141010 TATCGATACACAAAA-ATTGTATCGA
1 TATCGATACACAAAATA-TGTATCGA
141035 TA
1 TA
141037 CATTGGCTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (25 bp):
TATCGATACACAAAATATGTATCGA
Found at i:143492 original size:19 final size:20
Alignment explanation
Indices: 143447--143499 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
143437 CTGCCAGTTT
**
143447 CATGTATCGATACAATTGTG
1 CATGTATCGATACAATTGAA
143467 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
* *
143486 TATGTATTGATACA
1 CATGTATCGATACA
143500 TAGTATCGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:143511 original size:32 final size:33
Alignment explanation
Indices: 143470--143534 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
143460 AATTGTGCAT
* *
143470 GTATCGATACAATGAAT-ATGTATTGATACATA
1 GTATCGATACAAAGAATAATGTATCGATACATA
*
143502 GTATCGATACAAAGCATAATGTATCGATACATA
1 GTATCGATACAAAGAATAATGTATCGATACATA
143535 CAAGGGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (33 bp):
GTATCGATACAAAGAATAATGTATCGATACATA
Found at i:144237 original size:14 final size:14
Alignment explanation
Indices: 144218--144258 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
144208 GCTAGATTTC
144218 TCTTTTTTCTCTTT
1 TCTTTTTTCTCTTT
*
144232 TCTTTTATCTCTTT
1 TCTTTTTTCTCTTT
*
144246 T-TTCTTTCT-TTT
1 TCTTTTTTCTCTTT
144258 T
1 T
144259 TTCCTTCAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 4 0.17
13 6 0.25
14 14 0.58
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (14 bp):
TCTTTTTTCTCTTT
Found at i:144992 original size:168 final size:165
Alignment explanation
Indices: 144745--145213 Score: 459
Period size: 167 Copynumber: 2.8 Consensus size: 165
144735 CAATATATGT
** * * *
144745 AAAAAAAATTTAAAACTCATG-TAATAAATTGAATTTTTC-AAACTGATTCAATATGAACTT-AA
1 AAAAAAAATGAAAAACTCATGAAAAT-AATTGAATTTTTCAAAACTGATTTACTATGAA-TTAAA
* * *
144807 TGACAATATTAGATGAATTTTAAAAATTTTAAACCGAGAAAAATCCCTCTGAAAATGTTTATGGA
64 TGATAATATTTGATGAATTTTAAAAATTTTAAACCGAGAAAAATCCCTC-AAAAAT-TTTATGGA
*
144872 ATAGAAAACTCAGTTT-TTCGAAAACAA-AGACATTTCAAGG
127 ATAGAAAACTCAATTTATT-GAAAACAAGAGA-ATTTC-AGG
* * * **
144912 AAAAAAAATGAGAAGCTCCTGAAAATGGTTGAATTTTTCAAAACTGATTTACTATGAATTAAATG
1 AAAAAAAATGAAAAACTCATGAAAATAATTGAATTTTTCAAAACTGATTTACTATGAATTAAATG
* * * * * * * *
144977 ATGATATTTGATGAATATCAAAAATTTCAGACCGTGAAAAACCCCATCAAAAACCTTTATGGAAT
66 ATAATATTTGATGAATTTTAAAAATTTTAAACCGAGAAAAATCCC-TCAAAAA-TTTTATGGAAT
*
145042 AGAAAACTTAATTTATTGAAAACAAGAGAATTTCAGG
129 AGAAAACTCAATTTATTGAAAACAAGAGAATTTCAGG
** * * * * *
145079 GGAAAAAATGAAAAACTCATGAAAATAAATAAAATTTTCAAAACTAATTT-C-ATGGTGATTAAA
1 AAAAAAAATGAAAAACTCATGAAAATAATTGAATTTTTCAAAACTGATTTACTAT-G-AATTAAA
* * * *
145142 TAATAATATTTGATGAATTTTAAAAATTATAAACCAAGAAAAATCCCCCCAAAAATTTTATGGAG
64 TGATAATATTTGATGAATTTTAAAAATTTTAAACCGAGAAAAAT-CCCTCAAAAATTTTATGGA-
145207 AT-GAAAA
127 ATAGAAAA
145214 TTTTATATTT
Statistics
Matches: 244, Mismatches: 47, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
165 2 0.01
166 15 0.06
167 119 0.49
168 101 0.41
169 7 0.03
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.29
Consensus pattern (165 bp):
AAAAAAAATGAAAAACTCATGAAAATAATTGAATTTTTCAAAACTGATTTACTATGAATTAAATG
ATAATATTTGATGAATTTTAAAAATTTTAAACCGAGAAAAATCCCTCAAAAATTTTATGGAATAG
AAAACTCAATTTATTGAAAACAAGAGAATTTCAGG
Done.