Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1638
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110338
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Found at i:2084 original size:24 final size:24
Alignment explanation
Indices: 2053--2102 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
2043 AGTAACATCA
* *
2053 ATTTAAATAAAA-AATTATCAAAT
1 ATTTAAATAAAATAATAATAAAAT
2076 ATTTAAAATAAAATAATAATAAAAT
1 ATTT-AAATAAAATAATAATAAAAT
2101 AT
1 AT
2103 ATAATAGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 8 0.35
25 11 0.48
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (24 bp):
ATTTAAATAAAATAATAATAAAAT
Found at i:2529 original size:10 final size:10
Alignment explanation
Indices: 2514--2560 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
2504 TTTACATAAT
2514 TATATTTAAA
1 TATATTTAAA
* *
2524 TATATTTTAT
1 TATATTTAAA
*
2534 TATATTATAAT
1 TATATT-TAAA
2545 TATATTTAAA
1 TATATTTAAA
2555 -ATATTT
1 TATATTT
2561 TTTATTTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 6 0.19
10 17 0.53
11 9 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TATATTTAAA
Found at i:2537 original size:20 final size:21
Alignment explanation
Indices: 2512--2551 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
2502 TTTTTACATA
2512 ATTATATT-TAAATATATTTT
1 ATTATATTATAAATATATTTT
*
2532 ATTATATTATAATTATATTT
1 ATTATATTATAAATATATTT
2552 AAAATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATATTATAAATATATTTT
Found at i:2682 original size:15 final size:14
Alignment explanation
Indices: 2632--2692 Score: 54
Period size: 15 Copynumber: 4.3 Consensus size: 14
2622 AATCATGTCA
*
2632 TATTTATAT-TTTAT
1 TATTTATATAATT-T
*
2646 TATTT-TATATTTT
1 TATTTATATAATTT
2659 TATATTATATAATTT
1 TAT-TTATATAATTT
*
2674 TATTGTATATAATAT
1 TATT-TATATAATTT
2689 TATT
1 TATT
2693 AATTTTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
13 7 0.17
14 11 0.27
15 23 0.56
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (14 bp):
TATTTATATAATTT
Found at i:3451 original size:18 final size:18
Alignment explanation
Indices: 3428--3462 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
3418 AAATGTTTTT
3428 ATAAAAT-TAATAAATATA
1 ATAAAATAT-ATAAATATA
3446 ATAAAATATATAAATAT
1 ATAAAATATATAAATAT
3463 TACGTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAAAATATATAAATATA
Found at i:4596 original size:15 final size:17
Alignment explanation
Indices: 4565--4602 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
4555 AAAAATAAAA
4565 AAATTATATTATTTTAT
1 AAATTATATTATTTTAT
*
4582 CAATTATA-T-TTTTAT
1 AAATTATATTATTTTAT
4597 AAATTA
1 AAATTA
4603 AAAACTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 11 0.58
16 1 0.05
17 7 0.37
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
AAATTATATTATTTTAT
Found at i:5111 original size:16 final size:16
Alignment explanation
Indices: 5068--5117 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
5058 GATTGGATTA
*
5068 TTTT-TTTAAGTTATT
1 TTTTATTTAAATTATT
**
5083 TTAAATTTAAAATTATT
1 TTTTATTT-AAATTATT
5100 TTTTATTTAAATTATT
1 TTTTATTTAAATTATT
5116 TT
1 TT
5118 AAGTTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 2 0.07
16 13 0.46
17 13 0.46
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (16 bp):
TTTTATTTAAATTATT
Found at i:5150 original size:16 final size:16
Alignment explanation
Indices: 5078--5184 Score: 69
Period size: 16 Copynumber: 6.8 Consensus size: 16
5068 TTTTTTTAAG
* *
5078 TTATTTTAAATTTAAAA
1 TTATTTTAGATTT-AGA
** *
5095 TTATTTTTTATTTAAA
1 TTATTTTAGATTTAGA
*
5111 TTATTTTA-AGTTA-A
1 TTATTTTAGATTTAGA
* *
5125 TATTTTTTAGATTTTGA
1 T-TATTTTAGATTTAGA
*
5142 TTATTTTAGATTTAAAA
1 TTATTTTAGATTT-AGA
5159 TT-TTTT-GATTTAGA
1 TTATTTTAGATTTAGA
*
5173 TAATTTTAGATT
1 TTATTTTAGATT
5185 GAATTGTTCC
Statistics
Matches: 72, Mismatches: 12, Indels: 13
0.74 0.12 0.13
Matches are distributed among these distances:
14 5 0.07
15 19 0.26
16 32 0.44
17 16 0.22
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.60
Consensus pattern (16 bp):
TTATTTTAGATTTAGA
Found at i:5183 original size:31 final size:31
Alignment explanation
Indices: 5078--5184 Score: 117
Period size: 31 Copynumber: 3.4 Consensus size: 31
5068 TTTTTTTAAG
* * *
5078 TTATTTTAAATTTAAAATTATTTTTTATTTAAA
1 TTATTTTAGATTTAAAA-T-TTTTTGATTTAGA
* * *
5111 TTATTTTA-AGTTAATATTTTTTAGATTTTGA
1 TTATTTTAGATTTAAAATTTTTT-GATTTAGA
5142 TTATTTTAGATTTAAAATTTTTTGATTTAGA
1 TTATTTTAGATTTAAAATTTTTTGATTTAGA
*
5173 TAATTTTAGATT
1 TTATTTTAGATT
5185 GAATTGTTCC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
30 5 0.08
31 32 0.51
32 18 0.29
33 8 0.13
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.60
Consensus pattern (31 bp):
TTATTTTAGATTTAAAATTTTTTGATTTAGA
Found at i:6317 original size:47 final size:47
Alignment explanation
Indices: 6248--6337 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
6238 CTTCCCAGTT
6248 AATTTTATAAATTCTTCTATACATATCGTTACTCAATCAAAACAACA
1 AATTTTATAAATTCTTCTATACATATCGTTACTCAATCAAAACAACA
*
6295 AATTTTATAAATTCTTCTATACATATCTTTACTCAATCAAAAC
1 AATTTTATAAATTCTTCTATACATATCGTTACTCAATCAAAAC
6338 GTATTTAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.41, C:0.19, G:0.01, T:0.39
Consensus pattern (47 bp):
AATTTTATAAATTCTTCTATACATATCGTTACTCAATCAAAACAACA
Found at i:11997 original size:20 final size:19
Alignment explanation
Indices: 11974--12027 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
11964 GGATTATGAT
11974 ACATATATATATATATATA
1 ACATATATATATATATATA
11993 CACATATATATATATATATA
1 -ACATATATATATATATATA
12013 ACATAGTAT-TATATA
1 ACATA-TATATATATA
12028 CCATGAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 11 0.33
20 22 0.67
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (19 bp):
ACATATATATATATATATA
Found at i:12027 original size:2 final size:2
Alignment explanation
Indices: 11976--12012 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
11966 ATTATGATAC
* *
11976 AT AT AT AT AT AT AT AT AC AC AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12013 ACATAGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:14550 original size:29 final size:30
Alignment explanation
Indices: 14512--14575 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
14502 TTTTTTTCTG
* *
14512 AATAACTCTTTA-TATTT-TTATTGTATTCA
1 AATAACTCTTTATTATTTAAT-TTGTAATCA
*
14541 AATAAGTCTTTATTATTTAATTTGTAATCA
1 AATAACTCTTTATTATTTAATTTGTAATCA
14571 AATAA
1 AATAA
14576 ATTTTTAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 11 0.37
30 18 0.60
31 1 0.03
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.50
Consensus pattern (30 bp):
AATAACTCTTTATTATTTAATTTGTAATCA
Found at i:15655 original size:27 final size:25
Alignment explanation
Indices: 15625--15677 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
15615 CTTTTTTTTA
*
15625 ATATTTTTATAATTTAAAAACTATATT
1 ATATATTTAT-ATTTAAAAA-TATATT
*
15652 ATATATTTATATTTAAATATATATT
1 ATATATTTATATTTAAAAATATATT
15677 A
1 A
15678 AATGTTGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 8 0.33
27 9 0.38
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
ATATATTTATATTTAAAAATATATT
Found at i:16837 original size:16 final size:16
Alignment explanation
Indices: 16791--16919 Score: 124
Period size: 16 Copynumber: 8.2 Consensus size: 16
16781 AATAATTTTT
*
16791 AAATATTTTAAATTTA
1 AAATAATTTAAATTTA
* *
16807 TTAAAAAAATTAAATTTA
1 --AAATAATTTAAATTTA
16825 AAATAATTTAAATTTA
1 AAATAATTTAAATTTA
*
16841 AAATATTTTAAA--TA
1 AAATAATTTAAATTTA
*
16855 AAA-AAATTAAA-TTA
1 AAATAATTTAAATTTA
* *
16869 AAATTATCTAAATTTA
1 AAATAATTTAAATTTA
*
16885 AAA-ATTTTTAAATTTA
1 AAATA-ATTTAAATTTA
16901 AAATAATTTAAATTTA
1 AAATAATTTAAATTTA
16917 AAA
1 AAA
16920 CAAGTTCAGG
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
13 6 0.07
14 10 0.11
15 5 0.05
16 56 0.62
17 1 0.01
18 13 0.14
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATAATTTAAATTTA
Found at i:16880 original size:28 final size:29
Alignment explanation
Indices: 16823--16913 Score: 71
Period size: 28 Copynumber: 3.0 Consensus size: 29
16813 AAATTAAATT
* *
16823 TAAAATAATTTAAATTTAAAATATTTTAAA
1 TAAAA-AAATTAAATTTAAAATATTCTAAA
16853 TAAAAAAATTAAA-TTAAAAT-TATCTAAA
1 TAAAAAAATTAAATTTAAAATAT-TCTAAA
**
16881 TTTAAAAATTTTTAAATTTAAAATAATT-TAAA
1 --TAAAAA-AATTAAATTTAAAAT-ATTCTAAA
16913 T
1 T
16914 TTAAAACAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
27 1 0.02
28 12 0.24
29 7 0.14
30 12 0.24
31 5 0.10
32 11 0.22
33 1 0.02
34 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (29 bp):
TAAAAAAATTAAATTTAAAATATTCTAAA
Found at i:16881 original size:44 final size:45
Alignment explanation
Indices: 16808--16919 Score: 147
Period size: 44 Copynumber: 2.4 Consensus size: 45
16798 TTAAATTTAT
*
16808 TAAAAAAATTAAATTTAAAATAATTTAAATTT-AAAATATTTTAAA
1 TAAAAAAATTAAATTTAAAATAATCTAAATTTAAAAAT-TTTTAAA
*
16853 TAAAAAAATTAAA-TTAAAATTATCTAAATTTAAAAATTTTTAAA
1 TAAAAAAATTAAATTTAAAATAATCTAAATTTAAAAATTTTTAAA
*
16897 TTTAAAATAATTTAAATTTAAAA
1 --TAAAA-AAATTAAATTTAAAA
16920 CAAGTTCAGG
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
44 23 0.39
45 18 0.31
46 5 0.08
47 7 0.12
48 6 0.10
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (45 bp):
TAAAAAAATTAAATTTAAAATAATCTAAATTTAAAAATTTTTAAA
Found at i:18653 original size:19 final size:17
Alignment explanation
Indices: 18629--18667 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
18619 GAATGAAAAT
18629 ATTTTAATTTTTTAATATA
1 ATTTTAA-TTTTTAAT-TA
18648 ATTTTAATTTTTAATTA
1 ATTTTAATTTTTAATTA
18665 ATT
1 ATT
18668 AATTTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.25
18 8 0.40
19 7 0.35
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTAATTTTTAATTA
Found at i:19679 original size:102 final size:101
Alignment explanation
Indices: 19500--19688 Score: 252
Period size: 102 Copynumber: 1.9 Consensus size: 101
19490 ATAGTATTTT
* * * * * * *
19500 GAGAAATTTTTTGAAAGAATTATAAAATTAATTAACAAACAAAAGTATTTATTATTTACCATAAT
1 GAGAAATTTTTTGAAAGAAGTACAAAATGAATCAACAAACAAAAATATTTATTATCTACAATAAT
*
19565 AATCATAAATAATTATTAATAAGAATTTCTTTTAAA
66 AATAATAAATAATTATTAATAAGAATTTCTTTTAAA
* ** *
19601 GAGAAATTTTTTGAAAGAAGTACAAAATGACTCAATCAATTAAAAATATTTATTATCTACAATTA
1 GAGAAATTTTTTGAAAGAAGTACAAAATGAATCAA-CAAACAAAAATATTTATTATCTACAATAA
*
19666 TTATAATAAATAATTATTAATAA
65 TAATAATAAATAATTATTAATAA
19689 AGATATAAGA
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
101 30 0.41
102 44 0.59
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (101 bp):
GAGAAATTTTTTGAAAGAAGTACAAAATGAATCAACAAACAAAAATATTTATTATCTACAATAAT
AATAATAAATAATTATTAATAAGAATTTCTTTTAAA
Found at i:20216 original size:16 final size:17
Alignment explanation
Indices: 20189--20226 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
20179 AAAAAACTAA
*
20189 AATTATTTATAATTTAT
1 AATTATTTATAATATAT
20206 AATTA-TTATAATATAT
1 AATTATTTATAATATAT
20222 AATTA
1 AATTA
20227 CTATTAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTATTTATAATATAT
Found at i:26383 original size:19 final size:19
Alignment explanation
Indices: 26359--26408 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
26349 AGCTTCATAG
26359 GTATCGATACAACACTTAT
1 GTATCGATACAACACTTAT
26378 GTATCGATACAACACTTAT
1 GTATCGATACAACACTTAT
26397 GTATCGATACAA
1 GTATCGATACAA
26409 ATCGTTGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (19 bp):
GTATCGATACAACACTTAT
Found at i:27880 original size:38 final size:38
Alignment explanation
Indices: 27825--27900 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
27815 AAGAGGGTAG
* *
27825 ATGAATAGTCCTCGTAGGGTATTTCTTGTAAAGAAGTT
1 ATGAATAGTACTCGTAGGGTACTTCTTGTAAAGAAGTT
* *
27863 ATGAATAGTACTTGTAGGGTACTTGTTGTAAAGAAGTT
1 ATGAATAGTACTCGTAGGGTACTTCTTGTAAAGAAGTT
27901 GGATTCTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (38 bp):
ATGAATAGTACTCGTAGGGTACTTCTTGTAAAGAAGTT
Found at i:28506 original size:15 final size:15
Alignment explanation
Indices: 28485--28525 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
28475 AAGGGATTAT
28485 ATTATACATGTTAAG
1 ATTATACATGTTAAG
* *
28500 CTTATACTTGTTAAG
1 ATTATACATGTTAAG
*
28515 ATTTTACATGT
1 ATTATACATGT
28526 AGTACTTTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (15 bp):
ATTATACATGTTAAG
Found at i:31376 original size:48 final size:51
Alignment explanation
Indices: 31283--31396 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 51
31273 CGAAATTGAT
*
31283 GGGGTTGGAGTAT-CTCCGAGATGAAAAATTTAATATTTTGAAAATAAAAAC
1 GGGGTTGGAGTATCCTCC-AGATGAAAAATTCAATATTTTGAAAATAAAAAC
* * *
31334 GGGGTTGGAGTATCCT-C-GA-GAAAAATTC-ATAATTTTGGAAATAAGAAT
1 GGGGTTGGAGTATCCTCCAGATGAAAAATTCAAT-ATTTTGAAAATAAAAAC
31382 GGGGTTGGAGTATCC
1 GGGGTTGGAGTATCC
31397 CCTCGAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
47 2 0.04
48 37 0.65
49 2 0.04
51 14 0.25
52 2 0.04
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (51 bp):
GGGGTTGGAGTATCCTCCAGATGAAAAATTCAATATTTTGAAAATAAAAAC
Found at i:33929 original size:20 final size:21
Alignment explanation
Indices: 33904--33955 Score: 81
Period size: 20 Copynumber: 2.5 Consensus size: 21
33894 TAATACCTAG
33904 AATGTATCGATACAATA-AA-A
1 AATGTATCGATACAA-ACAATA
33924 AATGTATCGATACAAACAATA
1 AATGTATCGATACAAACAATA
33945 AATGTATCGAT
1 AATGTATCGAT
33956 GCATTTACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.03
20 17 0.57
21 12 0.40
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.27
Consensus pattern (21 bp):
AATGTATCGATACAAACAATA
Found at i:33972 original size:19 final size:19
Alignment explanation
Indices: 33948--33986 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
33938 AACAATAAAT
*
33948 GTATCGATGCATTTACTTA
1 GTATCGATACATTTACTTA
*
33967 GTATCGATACATTTCCTTA
1 GTATCGATACATTTACTTA
33986 G
1 G
33987 CAGTATGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (19 bp):
GTATCGATACATTTACTTA
Found at i:34050 original size:21 final size:21
Alignment explanation
Indices: 34003--34058 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
33993 GTAGGGTAGT
34003 TTTGTATCGATACATTTTAGG
1 TTTGTATCGATACATTTTAGG
** *
34024 CATGTATCGATACA-TTTATTG
1 TTTGTATCGATACATTTTA-GG
34045 TTTGTATCGATACA
1 TTTGTATCGATACA
34059 AATTGTAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (21 bp):
TTTGTATCGATACATTTTAGG
Found at i:34691 original size:34 final size:34
Alignment explanation
Indices: 34634--34782 Score: 128
Period size: 34 Copynumber: 4.3 Consensus size: 34
34624 AGGGAAAAGA
34634 AAAGG-AAAAG-GTAT-T-CTGCTCTTTGAGGAC
1 AAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGAC
34664 AAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGAC
1 AAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGAC
* * * * *
34698 AAGAGAAAAAAGAATGAAATGGGTCATACTCCTTGAGGAC
1 AA-AGGAAAAAG-A-G-TAT--GTCCTGCTCTTTGAGGAC
* *
34738 AAAGGAAAAAAGAGTATGTCTTGCT-TTTCGGGGAC
1 AAAGG-AAAAAGAGTATGTCCTGCTCTTT-GAGGAC
34773 AAAGGAAAAA
1 AAAGGAAAAA
34783 AGGAAATGAA
Statistics
Matches: 96, Mismatches: 11, Indels: 20
0.76 0.09 0.16
Matches are distributed among these distances:
30 5 0.05
31 5 0.05
32 4 0.04
33 1 0.01
34 24 0.25
35 24 0.25
36 1 0.01
37 3 0.03
38 3 0.03
39 3 0.03
40 23 0.24
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.21
Consensus pattern (34 bp):
AAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGAC
Found at i:34825 original size:75 final size:74
Alignment explanation
Indices: 34650--34823 Score: 201
Period size: 75 Copynumber: 2.3 Consensus size: 74
34640 AAAGGTATTC
34650 TGCTCTTTGAGGACAAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGACAAGAGAAAAAAGAATGA
1 TGCTCTTTGAGGACAAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGACAAGAGAAAAAAGAATGA
**
34715 AATGGGTCA
66 AATACGTCA
* * * *
34724 TACTCCTTGAGGACAAAGGAAAAAAGAGTATGTCTTGCT-TTTCGGGGACAA-AGGAAAAAAGGA
1 TGCTCTTTGAGGACAAAGG-AAAAAGAGTATGTCCTGCTCTTT-GAGGACAAGA-GAAAAAA-G-
*
34787 AATGAAGA-ACGTCT
61 AATGAA-ATACGTCA
*
34801 TGCTCTTTGAGGACAACGGAAAA
1 TGCTCTTTGAGGACAAAGGAAAA
34824 GAAGGAAATG
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
74 21 0.25
75 32 0.38
76 5 0.06
77 25 0.30
78 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.21
Consensus pattern (74 bp):
TGCTCTTTGAGGACAAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGACAAGAGAAAAAAGAATGA
AATACGTCA
Found at i:34829 original size:43 final size:43
Alignment explanation
Indices: 34755--34878 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
34745 AAAAGAGTAT
*
34755 GTCTTGCT-TTTCGGGGACAAAGGAAAA-AAGGAAATGAAGAAC
1 GTCTTGCTCTTT-GAGGACAAAGGAAAAGAAGGAAATGAAGAAC
* **
34797 GTCTTGCTCTTTGAGGACAACGGAAAAGAAGGAAATGAAGTGC
1 GTCTTGCTCTTTGAGGACAAAGGAAAAGAAGGAAATGAAGAAC
* * *
34840 GTCATGCTCTTTGAAGACAAAGGGAAAAGAAAGAAATGA
1 GTCTTGCTCTTTGAGGACAAA-GGAAAAGAAGGAAATGA
34879 GTCTTGCTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
42 21 0.30
43 34 0.48
44 16 0.23
ACGTcount: A:0.40, C:0.12, G:0.28, T:0.19
Consensus pattern (43 bp):
GTCTTGCTCTTTGAGGACAAAGGAAAAGAAGGAAATGAAGAAC
Found at i:35218 original size:62 final size:62
Alignment explanation
Indices: 35008--35873 Score: 781
Period size: 62 Copynumber: 14.1 Consensus size: 62
34998 AAAAAGGCGT
* * * *
35008 ACTAGAAA-GTGCCACCAACTCGTGTGAGCTTTA-AAAGAAAAAAACGTTCTTCTCTTTGAGG
1 ACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * * *
35069 ACTAAAAGGTGCTACCAACTTGTGTGGGCTTTAAAAAGGAAAA-ACG-CCTTGCTCTTCGAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCC-TGCTCTTTGAGG
** * * * * * ** *
35130 ACTAAAAAAATGCCACTAGCTTGTGTGGGCTTTAGAAAGAAAAAAACATTTTTCTCTTTGAGG
1 ACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * *
35193 ACTAAAAGGTGCTACCAATTCGTGTGGGCTTTA-AAAGAAAAAGGCATCCTGCTCTTTGAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
* * ** * *
35254 ACTAGAAGGGTGCTACCAACTCGTGTGGGCTTT-GAAAAGAAAAAGGTGTCTTGCTCTCTGAGG
1 ACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTAG-AAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * ** *
35317 ACTAAAGGGTGGCACCAACTCGTGT-GGCTTTAAAAAGAAAAAGGTGTCCTACTCTTTGAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * *
35378 ACTAAAAAGTGCCGCCAACTCGTGTGGG-TTTTGAAAAGAAAAAGACGTCTTGCTCTTTGAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAG-AAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * * *
35440 ACTAAAAATGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCAGCTCTTTGAGA
1 ACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * * *
35503 ACTAAAGGGTGCCACCAACTCGTGTGGG-TTTTGAAAAGAAAAAGGCATCCTACTCTTTGAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAG-AAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * * * * *
35565 ACTAAAGGGTACCACCAACTCTTGTGGGCTTT-GAAAAGAAAAAGGCATCCTACTTTTTGAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAG-AAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * *
35627 ACTAGAAAGGTGCCACCAACTTGTGTGGGCCTT------AAAAAGGCGTCCTGCTCTTTGAAG
1 ACTA-AAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
** ** * *
35684 ACTAATGGGTGCCACCAACTTATATGGGCTTT-GAAAAGAAAAAAACGTCCTGCTCTTTGAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAG-AAAGAAAAAGACGTCCTGCTCTTTGAGG
* * * * *
35746 ACTAAAGGGTGCCACCAACTTGTGTGAGCTTT-GAAAAGAAAAAGGCGTCCTGCTCTTTAAGG
1 ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAG-AAAGAAAAAGACGTCCTGCTCTTTGAGG
* * *
35808 ACTAAAAAGGTGCCACCAACTCGTGTGGTCTTT------AAAAAGGCGTTCTGCTCTTTGAGG
1 ACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
35865 ACTAAAAGG
1 ACTAAAAGG
35874 CTAAAAGGGG
Statistics
Matches: 679, Mismatches: 102, Indels: 53
0.81 0.12 0.06
Matches are distributed among these distances:
56 29 0.04
57 49 0.07
60 4 0.01
61 127 0.19
62 323 0.48
63 144 0.21
64 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (62 bp):
ACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAGAAAGAAAAAGACGTCCTGCTCTTTGAGG
Found at i:37190 original size:17 final size:18
Alignment explanation
Indices: 37154--37191 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37144 TACTTTTTGA
*
37154 TTTTTGTCGTTCCTCTTT
1 TTTTTGTCGTTCCTCATT
*
37172 TTTTTGTGGTT-CTCATT
1 TTTTTGTCGTTCCTCATT
37189 TTT
1 TTT
37192 ATGCTTTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.03, C:0.16, G:0.13, T:0.68
Consensus pattern (18 bp):
TTTTTGTCGTTCCTCATT
Found at i:42116 original size:76 final size:76
Alignment explanation
Indices: 42009--42359 Score: 410
Period size: 76 Copynumber: 4.6 Consensus size: 76
41999 AAATAGGTAA
* * *
42009 GGTTGGAGTGTCCCCTC-GAAAGTAATGGGGTTGGAGTA-CCCCTGAGAAAAATTTAATATTTTG
1 GGTTGGAGTATCCCTTCGGAAA-TAATAGGGTTGGAGTATCCCC-GAGAAAAATTTAATATTTTG
*
42072 AAAATAAAAACGA
64 AAAATAAAAACGG
* * *
42085 GGTTGGAGTATCCCCTCGGAATTGATAGGGTTGGAGTATCCCCGAGATGAAAAATTTAATATTTT
1 GGTTGGAGTATCCCTTCGGAAATAATAGGGTTGGAGTATCCCC--GA-GAAAAATTTAATATTTT
42150 GAAAAT--AAACGG
63 GAAAATAAAAACGG
* * * ** * *
42162 GGTTTGAGTATCCCTTCGAAAATAAAAGGGTTGGAGTATCCTTGAGAAAAA-TTCATAATTTTGG
1 GGTTGGAGTATCCCTTCGGAAATAATAGGGTTGGAGTATCCCCGAGAAAAATTTAAT-ATTTTGA
*
42226 AAATAAAAATGG
65 AAATAAAAACGG
* *
42238 GGTTGGAGTATCCCTTTGGAAATAATGGGGTTGGAGTATCCCCGA-AAAAATTTAATATTTTGAA
1 GGTTGGAGTATCCCTTCGGAAATAATAGGGTTGGAGTATCCCCGAGAAAAATTTAATATTTTGAA
42302 AATAAAAACGG
66 AATAAAAACGG
* * *
42313 GGTTGGAGTATCCCTTAGGAATTGAT-GGTGTTGGAGTATCCCCGAGA
1 GGTTGGAGTATCCCTTCGGAAATAATAGG-GTTGGAGTATCCCCGAGA
42360 TGAAAGATTG
Statistics
Matches: 235, Mismatches: 30, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
73 4 0.02
74 18 0.08
75 63 0.27
76 78 0.33
77 47 0.20
78 2 0.01
79 23 0.10
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.29
Consensus pattern (76 bp):
GGTTGGAGTATCCCTTCGGAAATAATAGGGTTGGAGTATCCCCGAGAAAAATTTAATATTTTGAA
AATAAAAACGG
Found at i:42210 original size:28 final size:29
Alignment explanation
Indices: 42150--42211 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
42140 TTAATATTTT
* * *
42150 GAAAATAAACGGGGTTTGAGTATCCCTTC
1 GAAAATAAACAGGGTTGGAGTATCCCTTA
42179 GAAAATAAA-AGGGTTGGAGTAT-CCTTGA
1 GAAAATAAACAGGGTTGGAGTATCCCTT-A
42207 GAAAA
1 GAAAA
42212 ATTCATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 4 0.14
28 16 0.55
29 9 0.31
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (29 bp):
GAAAATAAACAGGGTTGGAGTATCCCTTA
Found at i:42276 original size:153 final size:150
Alignment explanation
Indices: 42009--42328 Score: 419
Period size: 153 Copynumber: 2.1 Consensus size: 150
41999 AAATAGGTAA
* * * ** *
42009 GGTTGGAGTGTCCCCTCGAAAGTAATGGGGTTGGAGTACCCCTGAGAAAAATTTAATATTTTGAA
1 GGTTGGAGTATCCCTTCGAAAATAAAAGGGTTGGAGTACCCCTGAGAAAAATTCAATATTTTGAA
* *
42074 AATAAAAACGAGGTTGGAGTATCCCCTCGGAATTGATAGGGTTGGAGTATCCCCGAGATGAAAAA
66 AATAAAAACGAGGTTGGAGTATCCCCTCGGAAATAATAGGGTTGGAGTATCCCC--GA--AAAAA
42139 TTTAATATTTTGAAAAT-AAACGG
127 TTTAATATTTTGAAAATAAAACGG
* * * *
42162 GGTTTGAGTATCCCTTCGAAAATAAAAGGGTTGGAGTATCCTTGAGAAAAATTC-ATAATTTTGG
1 GGTTGGAGTATCCCTTCGAAAATAAAAGGGTTGGAGTACCCCTGAGAAAAATTCAAT-ATTTTGA
* * * * *
42226 AAATAAAAATGGGGTTGGAGTATCCCTTTGGAAATAATGGGGTTGGAGTATCCCCGAAAAAATTT
65 AAATAAAAACGAGGTTGGAGTATCCCCTCGGAAATAATAGGGTTGGAGTATCCCCGAAAAAATTT
42291 AATATTTTGAAAATAAAAACGG
130 AATATTTTGAAAAT-AAAACGG
42313 GGTTGGAGTATCCCTT
1 GGTTGGAGTATCCCTT
42329 AGGAATTGAT
Statistics
Matches: 146, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
149 22 0.15
151 23 0.16
152 2 0.01
153 99 0.68
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (150 bp):
GGTTGGAGTATCCCTTCGAAAATAAAAGGGTTGGAGTACCCCTGAGAAAAATTCAATATTTTGAA
AATAAAAACGAGGTTGGAGTATCCCCTCGGAAATAATAGGGTTGGAGTATCCCCGAAAAAATTTA
ATATTTTGAAAATAAAACGG
Found at i:42288 original size:28 final size:28
Alignment explanation
Indices: 42225--42288 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
42215 CATAATTTTG
*
42225 GAAATAAA-AATGGGGTTGGAGTATCCCT
1 GAAA-AAATAATGGGGTTGGAGTATCCCC
****
42253 TTGGAAATAATGGGGTTGGAGTATCCCC
1 GAAAAAATAATGGGGTTGGAGTATCCCC
42281 GAAAAAAT
1 GAAAAAAT
42289 TTAATATTTT
Statistics
Matches: 26, Mismatches: 9, Indels: 2
0.70 0.24 0.05
Matches are distributed among these distances:
27 3 0.12
28 23 0.88
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (28 bp):
GAAAAAATAATGGGGTTGGAGTATCCCC
Found at i:50617 original size:27 final size:26
Alignment explanation
Indices: 50568--50623 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
50558 TTTGAAATTT
* *
50568 ATATATTAAAAATTATAATTATTTAA
1 ATATATTAAAAATTAAAAATATTTAA
*
50594 ATATATTAAACTATTAAAAATATTTAA
1 ATATATTAAA-AATTAAAAATATTTAA
50621 ATA
1 ATA
50624 AATAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATATTAAAAATTAAAAATATTTAA
Found at i:50635 original size:18 final size:18
Alignment explanation
Indices: 50614--50662 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
50604 CTATTAAAAA
50614 TATTTAA-ATAAATAATTT
1 TATTTAATAT-AATAATTT
*
50632 TATTTAATATAATAATTA
1 TATTTAATATAATAATTT
*
50650 AATTTACATATAA
1 TATTTA-ATATAA
50663 AAAAAGTCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 19 0.70
19 8 0.30
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTAATATAATAATTT
Found at i:55528 original size:20 final size:20
Alignment explanation
Indices: 55503--55541 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
55493 ATAATCCAAA
55503 GTATTTGTATCGATACATAG
1 GTATTTGTATCGATACATAG
55523 GTATTTGTATCGATACATA
1 GTATTTGTATCGATACATA
55542 AAGGTTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (20 bp):
GTATTTGTATCGATACATAG
Found at i:55638 original size:13 final size:13
Alignment explanation
Indices: 55620--55644 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55610 ATATTGCTTA
55620 GTATCGATACATT
1 GTATCGATACATT
55633 GTATCGATACAT
1 GTATCGATACAT
55645 GTTCATAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:55659 original size:32 final size:33
Alignment explanation
Indices: 55599--55663 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
55589 CATACCCAAA
*
55599 TGTATCGATACATATTGCTTAGTATCGATACAT
1 TGTATCGATACATATTGCATAGTATCGATACAT
*
55632 TGTATCGATACATGTT-CATAGTATCGATACAT
1 TGTATCGATACATATTGCATAGTATCGATACAT
55664 CTTGAAAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATATTGCATAGTATCGATACAT
Found at i:57342 original size:3 final size:3
Alignment explanation
Indices: 57327--57364 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
57317 AACCATCAAA
*
57327 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
57365 AGTTGACTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:62838 original size:20 final size:20
Alignment explanation
Indices: 62810--62884 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
62800 TTTTACCCTG
62810 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
62830 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
62850 ATGTATCGATATATTTTGCA
1 ATGTATCGATACATTTTTCA
62870 ATGTATCGATACATT
1 ATGTATCGATACATT
62885 ATGTCTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:62866 original size:40 final size:39
Alignment explanation
Indices: 62810--62887 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
62800 TTTTACCCTG
*
62810 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTTTGCAATATATCGATACAT-TATGA
* *
62850 ATGTATCGATATATTTTGCAATGTATCGATACATTATG
1 ATGTATCGATACATTTTGCAATATATCGATACATTATG
62888 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (39 bp):
ATGTATCGATACATTTTGCAATATATCGATACATTATGA
Found at i:78146 original size:29 final size:29
Alignment explanation
Indices: 78106--78935 Score: 1010
Period size: 28 Copynumber: 28.9 Consensus size: 29
78096 TGTTCATCCC
78106 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78135 TTTCAAAGCCCACAAGTTAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78163 TTTCAAAGCCCACAAATCAGTAGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78192 TTTCAAAGCCCACAAGTCAGTGGTACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78221 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78250 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
78278 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78307 TTTCAAAGCCCATAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78336 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78364 TTTCAAAGCCCACAAGTTAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78393 TTTCAAAGCCCATAAGTTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78422 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78451 TTTCAAAGCACACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78480 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78508 TTTCAAAGCCCACAAGTTAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78536 TTTCAGAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
78564 TTGCGAAGCCTACAATTCAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
78592 TTTCAGAGCCCACAACTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
78620 TTTCGAAGCCCATAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
78648 TTGCGAAGCCCACAATTCAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78676 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78704 TTTC-AAGCCCACGAGTCAGTGGTAC-CT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78731 TTTCAAAGCCCACGAGTCAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78759 TTTCAAAGCCCACAAGTCAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
78787 TTTCAAAGCCCACGAGTCAGTGGCATTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
78816 TTT-AAAGCCCATGCAAGTCAGTGGCACCCT
1 TTTCAAAGCCCA--CAAGTCAGTGGCACTCT
* **
78846 TTT-AAAGCCCACGCAAGTTAGTAACACTCT
1 TTTCAAAGCCCA--CAAGTCAGTGGCACTCT
** *
78876 TTTCAAAGTCCACACGTGTCAGTGGCAACTTT
1 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCT
*
78908 TTTCAAAGCCTACACAAGTTAGTGGCAC
1 TTTCAAAGCC--CACAAGTCAGTGGCAC
78936 ATTTTTTTTA
Statistics
Matches: 707, Mismatches: 76, Indels: 34
0.87 0.09 0.04
Matches are distributed among these distances:
27 28 0.04
28 323 0.46
29 271 0.38
30 42 0.06
31 15 0.02
32 26 0.04
33 2 0.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (29 bp):
TTTCAAAGCCCACAAGTCAGTGGCACTCT
Found at i:78282 original size:86 final size:86
Alignment explanation
Indices: 78103--78935 Score: 1049
Period size: 86 Copynumber: 9.7 Consensus size: 86
78093 GAATGTTCAT
* *
78103 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* *
78167 AAAGCCCACAAATCAGTAGCA
66 AAAGCCCACAAGTCAGTGGCA
* * *
78188 CTCTTTTCAAAGCCCACAAGTCAGTGGTACTCTTTTCAAAGCCCACAAATCAGTGGCACTCTTTT
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTT
78253 CAAAGCCCACAAGTCAGTGGCA
65 CAAAGCCCACAAGTCAGTGGCA
* *
78275 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCATAAATCAGTGGCACTCTTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
78340 AAAGCCCACAAGTCAGTGGCA
66 AAAGCCCACAAGTCAGTGGCA
* * * *
78361 CCCTTTCAAAGCCCACAAGTTAGTGGCACTCCTTTCAAAGCCCATAAGTTAGTGGCACTCTTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
*
78426 AAAGCCCACAAATCAGTGGCA
66 AAAGCCCACAAGTCAGTGGCA
* * * *
78447 CTCTTTTCAAAGCACACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTT
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTT
*
78511 CAAAGCCCACAAGTTAGTGGCA
65 CAAAGCCCACAAGTCAGTGGCA
* * * * * *
78533 CCCTTTCAGAGCCCACAAGTCAGTGGCAC-CCTTGCGAAGCCTACAATTCAGTGGCACTC-TTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* *
78596 AGAGCCCACAACTCAGTGGCA
66 AAAGCCCACAAGTCAGTGGCA
* * * * * *
78617 CCCTTTCGAAGCCCATAAGTCAGTGGCAC-CCTTGCGAAGCCCACAATTCAGTGGCACTC-TTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
78680 AAAGCCCACAAGTCAGTGGCA
66 AAAGCCCACAAGTCAGTGGCA
* * *
78701 CCCTTTC-AAGCCCACGAGTCAGTGGTAC-CTTTTCAAAGCCCACGAGTCAGTGGCACTC-TTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
78763 AAAGCCCACAAGTCAGTGGCA
66 AAAGCCCACAAGTCAGTGGCA
* * * *
78784 TCCTTTCAAAGCCCACGAGTCAGTGGCATTCTTTT-AAAGCCCATGCAAGTCAGTGGCACCCTTT
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCA--CAAGTCAGTGGCACTCTTT
* **
78848 T-AAAGCCCACGCAAGTTAGTAACA
64 TCAAAGCCCA--CAAGTCAGTGGCA
* ** * *
78872 CTCTTTTCAAAGTCCACACGTGTCAGTGGCAACTTTTTTCAAAGCCTACACAAGTTAGTGGCAC
1 C-CCTTTCAAAG-CC-CACAAGTCAGTGGC-ACTCTTTTCAAAGCC--CACAAGTCAGTGGCAC
78936 ATTTTTTTTA
Statistics
Matches: 665, Mismatches: 65, Indels: 28
0.88 0.09 0.04
Matches are distributed among these distances:
83 74 0.11
84 157 0.24
85 31 0.05
86 264 0.40
87 78 0.12
88 10 0.02
89 9 0.01
90 2 0.00
91 13 0.02
92 6 0.01
93 19 0.03
95 2 0.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (86 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
AAAGCCCACAAGTCAGTGGCA
Found at i:79523 original size:20 final size:20
Alignment explanation
Indices: 79498--79569 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
79488 TACCCTGATG
79498 TATCGATACATTTTTCAATA
1 TATCGATACATTTTTCAATA
* * * *
79518 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATA
* * *
79538 TATCGATATATTCTGCAATA
1 TATCGATACATTTTTCAATA
79558 TATCGATACATT
1 TATCGATACATT
79570 ATGTCTTTTT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTTTCAATA
Found at i:79557 original size:40 final size:39
Alignment explanation
Indices: 79495--79572 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
79485 TTTTACCCTG
* *
79495 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTGCAATATATCGATACAT-TATGA
*
79535 ATGTATCGATATATTCTGCAATATATCGATACATTATG
1 ATGTATCGATACATTCTGCAATATATCGATACATTATG
79573 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTGCAATATATCGATACATTATGA
Found at i:83846 original size:17 final size:17
Alignment explanation
Indices: 83820--83854 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
83810 TGGTATCTTC
83820 TACATGAATGCAATATA
1 TACATGAATGCAATATA
*
83837 TACATTAATGCAATATA
1 TACATGAATGCAATATA
83854 T
1 T
83855 TCTACATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (17 bp):
TACATGAATGCAATATA
Found at i:84788 original size:20 final size:19
Alignment explanation
Indices: 84744--84814 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
84734 AACCCTAGAA
** *
84744 AGTATCGATACATACCCAG
1 AGTATCGATACATATTCAT
*
84763 ATGTATCGATACATATTACTT
1 A-GTATCGATACATATT-CAT
* *
84784 AGTATCGATAAATGTTCAT
1 AGTATCGATACATATTCAT
84803 AGTATCGATACA
1 AGTATCGATACA
84815 CCTTGAAAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 14 0.33
20 26 0.62
21 2 0.05
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (19 bp):
AGTATCGATACATATTCAT
Found at i:84840 original size:17 final size:18
Alignment explanation
Indices: 84803--84840 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
84793 AAATGTTCAT
84803 AGTATCGATACACCTTGAAA
1 AGTATCGATACA-C-TGAAA
84823 AGTATCGATACA-TGAAA
1 AGTATCGATACACTGAAA
84840 A
1 A
84841 TGGCAGTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
20 12 0.67
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (18 bp):
AGTATCGATACACTGAAA
Found at i:87606 original size:29 final size:30
Alignment explanation
Indices: 87555--87612 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
87545 AAATTTTAAC
* *
87555 ATAAAAGAAAAAGTAGAATAAAAA-ACTAA
1 ATAAAAGAAAAAGCAGAAAAAAAACACTAA
* *
87584 ATAAAAGAAAAGGCATAAAAAAAACACTA
1 ATAAAAGAAAAAGCAGAAAAAAAACACTA
87613 TCATGCAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.71, C:0.07, G:0.10, T:0.12
Consensus pattern (30 bp):
ATAAAAGAAAAAGCAGAAAAAAAACACTAA
Found at i:92370 original size:154 final size:154
Alignment explanation
Indices: 92090--92399 Score: 548
Period size: 154 Copynumber: 2.0 Consensus size: 154
92080 TTTTTTTCTT
92090 GGTTAACTTGAAATAATAATTGAAAATTATTATTGTTAAAAAAATAACAACAATCATTAAAATAG
1 GGTTAACTTGAAATAATAATTGAAAATTATTATTGTTAAAAAAATAACAACAATCATTAAAATAG
**
92155 TAAAATCCTTAAAATTAAAGATTGAAATCGTAATTATTAATTATAAAATATTTTGGTTCATGTCA
66 TAAAATCCTTAAAATTAAAGATTGAAATCCCAATTATTAATTATAAAATATTTTGGTTCATGTCA
92220 TAGAGTCTAATGAGAATAGGGTTG
131 TAGAGTCTAATGAGAATAGGGTTG
* * *
92244 GGTTAACTTGAAATAGTAGTTGAAAGTTATTATTGTTAAAAAAATAACAACAATCATTAAAATAG
1 GGTTAACTTGAAATAATAATTGAAAATTATTATTGTTAAAAAAATAACAACAATCATTAAAATAG
**
92309 TAAAATCCTTAAAATTAGTGATTGAAATCCCAATTATTAATTATAAAATATTTTGGTTCATGTCA
66 TAAAATCCTTAAAATTAAAGATTGAAATCCCAATTATTAATTATAAAATATTTTGGTTCATGTCA
*
92374 TAGAGTCTAATGAGATTAGGGTTG
131 TAGAGTCTAATGAGAATAGGGTTG
92398 GG
1 GG
92400 GAGAGAGGAA
Statistics
Matches: 148, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
154 148 1.00
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (154 bp):
GGTTAACTTGAAATAATAATTGAAAATTATTATTGTTAAAAAAATAACAACAATCATTAAAATAG
TAAAATCCTTAAAATTAAAGATTGAAATCCCAATTATTAATTATAAAATATTTTGGTTCATGTCA
TAGAGTCTAATGAGAATAGGGTTG
Found at i:92603 original size:13 final size:13
Alignment explanation
Indices: 92572--92600 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
92562 GAAGAATTTT
92572 TAAATTTTTTACA
1 TAAATTTTTTACA
92585 TAAATTTTTTA-A
1 TAAATTTTTTACA
92597 TAAA
1 TAAA
92601 ATTCATCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (13 bp):
TAAATTTTTTACA
Found at i:95853 original size:7 final size:6
Alignment explanation
Indices: 95821--95852 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
95811 CTTGTCGAAC
95821 TAAATT TAAATT TAAATT TAAATTT TAAATT T
1 TAAATT TAAATT TAAATT TAAA-TT TAAATT T
95853 TTAACATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TAAATT
Found at i:96942 original size:15 final size:15
Alignment explanation
Indices: 96919--96960 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
96909 ATATAAAAAT
*
96919 TAATATTAAATTTAA
1 TAATTTTAAATTTAA
*
96934 TAATTTTAAATATAA
1 TAATTTTAAATTTAA
*
96949 -AATTTTCAATTT
1 TAATTTTAAATTT
96961 TTACTGTACT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTTTAAATTTAA
Found at i:97744 original size:27 final size:28
Alignment explanation
Indices: 97692--97744 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
97682 AATATTAGGT
*
97692 ATAATTATATAAATATAATATGAATAAA
1 ATAATTATATAAATATAATATAAATAAA
* *
97720 ATAATTA-ATTAATATATTATAAATA
1 ATAATTATATAAATATAATATAAATA
97745 TATATTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (28 bp):
ATAATTATATAAATATAATATAAATAAA
Found at i:97803 original size:16 final size:17
Alignment explanation
Indices: 97756--97816 Score: 56
Period size: 16 Copynumber: 3.7 Consensus size: 17
97746 ATATTTTAAA
*
97756 ATTTATATAATAAAAATT
1 ATTTATA-AATATAAATT
*
97774 ATTTATATAT-TAAATT
1 ATTTATAAATATAAATT
*
97790 -TTTATAAATATAAAAT
1 ATTTATAAATATAAATT
*
97806 A-TGATAAATAT
1 ATTTATAAATAT
97817 GATCATATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
15 8 0.22
16 19 0.53
17 2 0.06
18 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
ATTTATAAATATAAATT
Found at i:98031 original size:27 final size:27
Alignment explanation
Indices: 97985--98083 Score: 85
Period size: 28 Copynumber: 3.4 Consensus size: 27
97975 TATTTTTTTC
97985 ATATATTT-TA-AATATATTTAAAATATT
1 ATATATTTATATAA-AT-TTTAAAATATT
98012 ATATATTTATATAAATTTTAATAAATTAATT
1 ATATATTTATATAAATTTT-A-AAA-T-ATT
* *
98043 ATTTATATTATATAAAATTTAAAATATTT
1 ATATAT-TTATATAAATTTTAAAATA-TT
*
98072 TTATATTTATAT
1 ATATATTTATAT
98084 TATGCTTGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
27 11 0.18
28 12 0.20
29 12 0.20
30 4 0.07
31 9 0.15
32 12 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
ATATATTTATATAAATTTTAAAATATT
Found at i:98050 original size:33 final size:29
Alignment explanation
Indices: 98000--98083 Score: 95
Period size: 32 Copynumber: 2.9 Consensus size: 29
97990 TTTTAAATAT
98000 ATTTAAAATATTA--TATATTTATATAAA
1 ATTTAAAATATTATTTATATTTATATAAA
*
98027 TTTTAATAAATTAATTATTTATA-TTATATAAA
1 ATTT-A-AAA-T-ATTATTTATATTTATATAAA
98059 ATTTAAAATATT-TTTATATTTATAT
1 ATTTAAAATATTATTTATATTTATAT
98084 TATGCTTGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
27 9 0.19
28 10 0.21
29 4 0.08
30 4 0.08
31 5 0.10
32 12 0.25
33 4 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
ATTTAAAATATTATTTATATTTATATAAA
Found at i:100849 original size:20 final size:21
Alignment explanation
Indices: 100821--100860 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
100811 TTATAAATAA
*
100821 AAAAGGAAAATTAAAAAAAAG
1 AAAAGGAAAAGTAAAAAAAAG
100842 AAAA-GAAAAGTAAAAAAAA
1 AAAAGGAAAAGTAAAAAAAA
100861 AAAGAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (21 bp):
AAAAGGAAAAGTAAAAAAAAG
Found at i:102766 original size:20 final size:20
Alignment explanation
Indices: 102722--102775 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
102712 AGAATTAATC
**
102722 TAAATTAAATAGATAT-TAG
1 TAAATTAAATATTTATATAG
*
102741 TAAATTAATTATTTATATAG
1 TAAATTAAATATTTATATAG
*
102761 TTAATTAAATATTTA
1 TAAATTAAATATTTA
102776 AATAATCTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (20 bp):
TAAATTAAATATTTATATAG
Done.