Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold164
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2248410
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 25 characters in sequence are not A, C, G, or T
File 5 of 15
Found at i:709775 original size:20 final size:19
Alignment explanation
Indices: 709729--709805 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 19
709719 TTTTACCCTG
* * *
709729 ATGTATCAATACATTTTTCA
1 ATGTATCGATACATCTAT-A
* *
709749 ATATATCGATACATGTATGA
1 ATGTATCGATACATCTAT-A
*
709769 ATGTATCGATATATTCTATA
1 ATGTATCGATACA-TCTATA
*
709789 ATGTATTGATACATCTA
1 ATGTATCGATACATCTA
709806 GTTAAAATTA
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
19 4 0.09
20 38 0.83
21 4 0.09
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (19 bp):
ATGTATCGATACATCTATA
Found at i:723745 original size:15 final size:15
Alignment explanation
Indices: 723725--723758 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
723715 CCTTAACAAC
723725 CAAAAAAAAACAAAA
1 CAAAAAAAAACAAAA
723740 CAAAAAAAAACAAAA
1 CAAAAAAAAACAAAA
723755 -AAAA
1 CAAAA
723759 CAAGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAAAAAAAACAAAA
Found at i:723748 original size:19 final size:19
Alignment explanation
Indices: 723726--723768 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
723716 CTTAACAACC
*
723726 AAAAAA-AAACAAAACAAA
1 AAAAAACAAAAAAAACAAA
*
723744 AAAAAACAAAAAAAACAAG
1 AAAAAACAAAAAAAACAAA
723763 AAAAAA
1 AAAAAA
723769 TAGCAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (19 bp):
AAAAAACAAAAAAAACAAA
Found at i:723766 original size:10 final size:9
Alignment explanation
Indices: 723726--723768 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
723716 CTTAACAACC
723726 AAAAAA-AA
1 AAAAAACAA
*
723734 ACAAAACAAA
1 AAAAAAC-AA
723744 AAAAAACAA
1 AAAAAACAA
723753 AAAAAACAA
1 AAAAAACAA
723762 GAAAAAA
1 -AAAAAA
723769 TAGCAAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 5 0.17
9 11 0.37
10 14 0.47
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:725041 original size:29 final size:29
Alignment explanation
Indices: 725001--726781 Score: 2108
Period size: 29 Copynumber: 61.9 Consensus size: 29
724991 TGCTCATCCC
725001 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
725030 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725059 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
725088 TTTTAAAGCCTACAAGTTAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725116 TTTCAAAGCCAACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725145 TTTCAAAACCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725174 TTTCAAAGCCCAAAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725202 TTTCAAAGCCCAAAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725231 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725259 TTTCAAAACCCACAAGTCCA-TGGCACTCT
1 TTTCAAAGCCCACAAGT-CAGTGGCACTCT
* *
725288 TTTCAAAGCCCACAAATTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725317 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725345 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725373 TTTCAAAGCCCACAAGTCAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
725402 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725431 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725460 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725489 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725517 TTTCAGAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
725545 TTTCGAAGCCCATAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
725574 TGT-GAAGCCCACAATTCAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725601 TTTCAAAGCCCACAAGTCACTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
725629 TTTCAAAGCCCACACAAGTCAGTGGCACTCCT
1 TTTCAAAG-CC-CACAAGTCAGTGGCACT-CT
*
725661 TTT-AAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725688 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725717 TTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
725746 TTT-AAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725774 TTTCAAAGCCCACAAATCAATGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725803 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725831 TTTCAAAGCCCACAAGTCAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725860 TTTCAAAGCCCACAAGTGAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725889 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
725918 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725947 TTTCAAAGCCCACAAGTCAGGGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
725976 TTT-AAAGCCCACAAGTTAGTGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
726004 TTT-AGAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
726031 TTTCGAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
726059 TTGCGAAGCCCACAATTCAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
726087 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
726116 TTTCGAAGCCCACAAGTCAGTGACAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
726144 TTTCAAAGCCTACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
726173 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
726202 TTTCAAAGCCCACAAGTCAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
726231 TTTCAAAGCCCACAAATCATTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
726260 TTTCATAGCCCACAAGTCAGCGGTAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
726288 TTTCAAAGCAGAGCCCACAAGTCAGTGGCAC-CC
1 TTTC--A--A-AGCCCACAAGTCAGTGGCACTCT
* * *
726321 TTTCGAAGCCCATAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
726349 TTGCGAAGCCCACAATTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
726377 TTGCGAAGCCCACAATTCAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
726405 TTTCAAAGCCCGCAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
726433 TTTCAAAGCCCACACAAGTTAGTGGCACACCT
1 TTTCAAAG-CC-CACAAGTCAGTGGCAC-TCT
*
726465 TTT-AAAGCCCACGCAAGTCAGTGGCAC-AT
1 TTTCAAAGCCCA--CAAGTCAGTGGCACTCT
* * * *
726494 TTTCAAAGCCCGCGAGTTAGTAGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
726522 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
726550 TTTC-AAGCCCACGAGTTAGTGGTA-GCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
** *
726577 TTTCAAAGCCCATGAGTTAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
726605 TTTCAAAGCCCACAAGTCAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
726633 TTTCAAAGCCCACGAGTCAATGACATTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
726661 TTTCAAAGCCTACGCAAGTTAGTGCCA-TCCT
1 TTTCAAAGCC--CACAAGTCAGTGGCACT-CT
* **
726692 TTT-AAAGCCCACGCAAGTTAGTAACACTCT
1 TTTCAAAGCCCA--CAAGTCAGTGGCACTCT
* *
726722 TTTCAAAGCCCACACGTGTCAGTGGCAACTTT
1 TTTCAAAGCCCACA--AGTCAGTGGC-ACTCT
*
726754 TTTCAAAGCCTACACAAGTTAGTGGCAC
1 TTTCAAAGCC--CACAAGTCAGTGGCAC
726782 ATTTTTTTAA
Statistics
Matches: 1543, Mismatches: 154, Indels: 108
0.85 0.09 0.06
Matches are distributed among these distances:
27 37 0.02
28 660 0.43
29 673 0.44
30 74 0.05
31 41 0.03
32 30 0.02
33 24 0.02
34 4 0.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (29 bp):
TTTCAAAGCCCACAAGTCAGTGGCACTCT
Found at i:725137 original size:28 final size:28
Alignment explanation
Indices: 724998--726781 Score: 2035
Period size: 28 Copynumber: 62.0 Consensus size: 28
724988 GAATGCTCAT
724998 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
725026 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725055 CTCTTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
725084 CTCTTTTTAAAGCCTACAAGTTAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725113 CCCTTTCAAAGCCAACAAATCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725141 CTCTTTTCAAAACCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725170 CTCTTTTCAAAGCCCAAAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725199 CCCTTTCAAAGCCCAAAAATCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
725227 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
725256 CCCTTTCAAAACCCACAAGTCCA-TGGCA
1 CCCTTTCAAAGCCCACAAGT-CAGTGGCA
* * *
725284 CTCTTTTCAAAGCCCACAAATTAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
725313 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
725342 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
725370 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
725398 CTCCTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725427 CTCTTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725456 CTCTTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
725485 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
725514 CCCTTTCAGAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725542 CCCTTTCGAAGCCCATAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725570 CCCTTGT-GAAGCCCACAATTCAGTGGCA
1 CCCTT-TCAAAGCCCACAAGTCAGTGGCA
* *
725598 CTCTTTCAAAGCCCACAAGTCACTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
725626 CCCTTTCAAAGCCCACACAAGTCAGTGGCA
1 CCCTTTCAAAG-CC-CACAAGTCAGTGGCA
*
725656 CTCCTTTTAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
725685 CCCTTTCAAAGCCCACAAATCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
725713 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
725742 CCCTTTTAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
725770 CTCTTTTCAAAGCCCACAAATCAATGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
725799 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
725828 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
725856 CTCCTTTCAAAGCCCACAAGTGAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725885 CTCTTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725914 CTCTTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725943 CTCTTTTCAAAGCCCACAAGTCAGGGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
725972 CCCTTTTAAAGCCCACAAGTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
726000 CCCTTTTAGAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
726028 CCCTTTCGAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
726056 CCCTTGCGAAGCCCACAATTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
726084 CTCTTTCAAAGCCCACAAATCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
726112 CTCTTTTCGAAGCCCACAAGTCAGTGACA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
726141 CCCTTTCAAAGCCTACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
726169 CTCTTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
726198 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
726227 CTCCTTTCAAAGCCCACAAATCATTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
726256 CTCTTTTCATAGCCCACAAGTCAGCGGTA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
726285 CCCTTTCAAAGCAGAGCCCACAAGTCAGTGGCA
1 CCCTTTC--A--A-AGCCCACAAGTCAGTGGCA
* *
726318 CCCTTTCGAAGCCCATAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
726346 CCCTTGCGAAGCCCACAATTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
726374 CCCTTGCGAAGCCCACAATTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
726402 CTCTTTCAAAGCCCGCAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
726430 CCCTTTCAAAGCCCACACAAGTTAGTGGCA
1 CCCTTTCAAAG-CC-CACAAGTCAGTGGCA
*
726460 CACCTTTTAAAGCCCACGCAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCA--CAAGTCAGTGGCA
** * * * *
726491 CATTTTCAAAGCCCGCGAGTTAGTAGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
726519 CTCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
726547 CCCTTTC-AAGCCCACGAGTTAGTGGTA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * ** *
726574 GCTTTTCAAAGCCCATGAGTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
726602 CTCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
726630 TCCTTTCAAAGCCCACGAGTCAATGACA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
** * * *
726658 TTCTTTCAAAGCCTACGCAAGTTAGTGCCA
1 CCCTTTCAAAGCC--CACAAGTCAGTGGCA
* * * **
726688 TCCTTTTAAAGCCCACGCAAGTTAGTAACA
1 CCCTTTCAAAGCCCA--CAAGTCAGTGGCA
* *
726718 CTCTTTTCAAAGCCCACACGTGTCAGTGGCAA
1 C-CCTTTCAAAGCCCACA--AGTCAGTGGC-A
** *
726750 CTTTTTTCAAAGCCTACACAAGTTAGTGGCA
1 C-CCTTTCAAAGCC--CACAAGTCAGTGGCA
726781 C
1 C
726782 ATTTTTTTAA
Statistics
Matches: 1542, Mismatches: 176, Indels: 73
0.86 0.10 0.04
Matches are distributed among these distances:
27 23 0.01
28 686 0.44
29 656 0.43
30 76 0.05
31 51 0.03
32 22 0.01
33 24 0.02
34 4 0.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (28 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:725151 original size:86 final size:86
Alignment explanation
Indices: 724999--726781 Score: 2138
Period size: 86 Copynumber: 20.7 Consensus size: 86
724989 AATGCTCATC
*
724999 CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
*
725064 AAGCCCACAAATCAGTGGCACT
65 AAGCCCACAAGTCAGTGGCACT
* * * * * *
725086 CTTTTTAAAGCCTACAAGTTAGTGGCACCCTTTCAAAGCCAACAAATCAGTGGCACTCTTTTCAA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
*
725151 AACCCACAAGTCAGTGGCACT
66 AGCCCACAAGTCAGTGGCACT
* * * *
725172 CTTTTCAAAGCCCAAAAGTCAGTGGCACCCTTTCAAAGCCCAAAAATCAGTGGCACTCTTTTCAA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
725237 AGCCCACAAGTCAGTGGCAC-
66 AGCCCACAAGTCAGTGGCACT
* * * *
725257 CCTTTCAAAACCCACAAGTCCA-TGGCACTCTTTTCAAAGCCCACAAATTAGTGGCACTCTTTTC
1 CCTTTCAAAGCCCACAAGT-CAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
725321 AAAGCCCACAAGTCAGTGGCAC-
64 AAAGCCCACAAGTCAGTGGCACT
*
725343 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
725408 AGCCCACAAGTCAGTGGCACT
66 AGCCCACAAGTCAGTGGCACT
* * * *
725429 CTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
725494 AAGCCCACAAGTCAGTGGCAC-
65 AAGCCCACAAGTCAGTGGCACT
* * * * * *
725515 CCTTTCAGAGCCCACAAGTCAGTGGCACCCTTTCGAAGCCCATAAGTCAGTGGCACCCTTGT-GA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
*
725579 AGCCCACAATTCAGTGGCACT
66 AGCCCACAAGTCAGTGGCACT
*
725600 -CTTTCAAAGCCCACAAGTCACTGGCACCCTTTCAAAGCCCACACAAGTCAGTGGCACTCCTTTT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGCACT-CTTTT
725664 -AAAGCCCACAAGTCAGTGGCAC-
63 CAAAGCCCACAAGTCAGTGGCACT
* * *
725686 CCTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTT-A
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
725750 AAGCCCACAAGTCAGTGGCACT
65 AAGCCCACAAGTCAGTGGCACT
* * * * *
725772 CTTTTCAAAGCCCACAAATCAATGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
725836 AAGCCCACAAGTCAGTGGCACT
65 AAGCCCACAAGTCAGTGGCACT
* * *
725858 CCTTTCAAAGCCCACAAGTGAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
*
725923 AAGCCCACAAATCAGTGGCACT
65 AAGCCCACAAGTCAGTGGCACT
* * * * * *
725945 CTTTTCAAAGCCCACAAGTCAGGGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACCCTTTT-AG
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
726009 AGCCCACAAGTCAGTGGCAC-
66 AGCCCACAAGTCAGTGGCACT
* * * *
726029 CCTTTCGAAGCCCACAAGTCAGTGGCACCCTTGCGAAGCCCACAATTCAGTGGCACTC-TTTCAA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
*
726093 AGCCCACAAATCAGTGGCACT
66 AGCCCACAAGTCAGTGGCACT
* * * *
726114 CTTTTCGAAGCCCACAAGTCAGTGACACCCTTTCAAAGCCTACAAGTCAGTGGCACTCTTTTCAA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
*
726179 AGCCCACAAATCAGTGGCACT
66 AGCCCACAAGTCAGTGGCACT
* * *
726200 CTTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAATCATTGGCACTCTTTTCA
1 CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
* * *
726265 TAGCCCACAAGTCAGCGGTAC-
65 AAGCCCACAAGTCAGTGGCACT
* * *
726286 CCTTTCAAAGCAGAGCCCACAAGTCAGTGGCACCCTTTCGAAGCCCATAAGTCAGTGGCAC-CCT
1 CCTTTC--A--A-AGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
726350 TGCGAAGCCCACAATTCAGTGGCAC-
61 TTCAAAGCCCACAAGTCAGTGGCACT
* * * * * *
726375 CCTTGCGAAGCCCACAATTCAGTGGCACTCTTTCAAAGCCCGCAAGTCAGTGGCAC-CCTTTCAA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
* *
726439 AGCCCACACAAGTTAGTGGCACA
66 AG-CC-CACAAGTCAGTGGCACT
* ** * * * *
726462 CCTTTTAAAGCCCACGCAAGTCAGTGGCACATTTTCAAAGCCCGCGAGTTAGTAGCACTC-TTTC
1 CCTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
726526 AAAGCCCACAAGTCAGTGGCAC-
64 AAAGCCCACAAGTCAGTGGCACT
* * * * * ** *
726548 CCTTTC-AAGCCCACGAGTTAGTGGTAGCTTTTCAAAGCCCATGAGTTAGTGGCACTC-TTTCAA
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
726611 AGCCCACAAGTCAGTGGCA-T
66 AGCCCACAAGTCAGTGGCACT
* * * ** * * *
726631 CCTTTCAAAGCCCACGAGTCAATGACATTCTTTCAAAGCCTACGCAAGTTAGTGCCA-TCCTTTT
1 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC--CACAAGTCAGTGGCACT-CTTTT
* **
726695 -AAAGCCCACGCAAGTTAGTAACACT
63 CAAAGCCCA--CAAGTCAGTGGCACT
* * ** *
726720 CTTTTCAAAGCCCACACGTGTCAGTGGCAACTTTTTTCAAAGCCTACACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACA--AGTCAGTGGC-AC-CCTTTCAAAGCC--CACAAGTCAGTGGCAC
726782 ATTTTTTTAA
Statistics
Matches: 1487, Mismatches: 166, Indels: 79
0.86 0.10 0.05
Matches are distributed among these distances:
83 70 0.05
84 200 0.13
85 221 0.15
86 549 0.37
87 260 0.17
88 22 0.01
89 85 0.06
90 26 0.02
91 27 0.02
92 1 0.00
93 26 0.02
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (86 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAA
AGCCCACAAGTCAGTGGCACT
Found at i:726308 original size:33 final size:33
Alignment explanation
Indices: 726266--726329 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
726256 CTCTTTTCAT
*
726266 AGCCCACAAGTCAGCGGTACCCTTTCAAAGCAG
1 AGCCCACAAGTCAGCGGCACCCTTTCAAAGCAG
* *
726299 AGCCCACAAGTCAGTGGCACCCTTTCGAAGC
1 AGCCCACAAGTCAGCGGCACCCTTTCAAAGC
726330 CCATAAGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.28, C:0.34, G:0.22, T:0.16
Consensus pattern (33 bp):
AGCCCACAAGTCAGCGGCACCCTTTCAAAGCAG
Found at i:727372 original size:20 final size:20
Alignment explanation
Indices: 727340--727413 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 20
727330 TTTTACCCTG
*
727340 ATGTATTGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
727360 ATATATCGATACATATATGA
1 ATGTATCGATACATTTTTCA
* * *
727380 ATGTATCGATATATTCTGCA
1 ATGTATCGATACATTTTTCA
727400 ATGTATCGATACAT
1 ATGTATCGATACAT
727414 CTAGTTAAAA
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:730594 original size:28 final size:28
Alignment explanation
Indices: 730533--730614 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
730523 TTTTGGAGAT
*
730533 AATAACGGGGTTGGAGTGTTCCCTCG--GA
1 AATAACGGGGTTGGAGT-ATCCC-CGATGA
*
730561 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGGGGTTGGAGTATCCCCGATGA
* * *
730589 AATAACGAGGTTAGAGTATCCTCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
730615 TGTGAAAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
28 40 0.87
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGGGGTTGGAGTATCCCCGATGA
Found at i:730756 original size:51 final size:51
Alignment explanation
Indices: 730594--730766 Score: 195
Period size: 52 Copynumber: 3.4 Consensus size: 51
730584 GATGAAATAA
* * *
730594 CGAGGTTAGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAAT
1 CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGGAAATAAAAT
* * * * *
730646 CG-GTGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAC
1 CGAG-GTTGGAGTATCCCCGATT-ATGAAAAATTGGTATTTTGGAAATAAAAT
* *** *
730698 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGT
1 CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAAT
730749 CGAGGTTGGAGTATCCCC
1 CGAGGTTGGAGTATCCCC
730767 TCGGAAATAA
Statistics
Matches: 100, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
51 38 0.38
52 51 0.51
53 11 0.11
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
CGAGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAAT
Found at i:730787 original size:28 final size:27
Alignment explanation
Indices: 730752--730823 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
730742 ATAAAGTCGA
**
730752 GGTTGGAGTATCCCCTCGGAAATAACGG
1 GGTTGGAGTATCCCCGAGG-AATAACGG
* *
730780 GGTTGGAGTATCCCCGATGATTAACGG
1 GGTTGGAGTATCCCCGAGGAATAACGG
*
730807 GGTTGGAGTGTCCCCGA
1 GGTTGGAGTATCCCCGA
730824 TTGTGAAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.21, C:0.21, G:0.35, T:0.24
Consensus pattern (27 bp):
GGTTGGAGTATCCCCGAGGAATAACGG
Found at i:733312 original size:13 final size:13
Alignment explanation
Indices: 733294--733319 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
733284 ACAAAGATCC
733294 ATGTATCGATACA
1 ATGTATCGATACA
733307 ATGTATCGATACA
1 ATGTATCGATACA
733320 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:733315 original size:33 final size:33
Alignment explanation
Indices: 733273--733339 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
733263 AAAATTTCCA
***
733273 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
733306 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
733339 A
1 A
733340 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:734784 original size:13 final size:13
Alignment explanation
Indices: 734766--734791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
734756 CATTTTGGGA
734766 TGTATCGATACAT
1 TGTATCGATACAT
734779 TGTATCGATACAT
1 TGTATCGATACAT
734792 CTTATGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:734789 original size:33 final size:32
Alignment explanation
Indices: 734746--734809 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
734736 ACGACACTAA
* * *
734746 TGTATTGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTAGG-TGTATCGATACAT
*
734779 TGTATCGATACATCTTATGTGTATCGATACA
1 TGTATCGATACATCTTAGGTGTATCGATACA
734810 AACAGTTAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATCTTAGGTGTATCGATACAT
Found at i:734877 original size:13 final size:13
Alignment explanation
Indices: 734859--734883 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
734849 ACATTTGGTC
734859 ATGTATCGATACA
1 ATGTATCGATACA
734872 ATGTATCGATAC
1 ATGTATCGATAC
734884 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:737549 original size:16 final size:16
Alignment explanation
Indices: 737530--737563 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
737520 AAAATAAAAC
*
737530 TATATTTAAATATATA
1 TATATATAAATATATA
737546 TATATATAAATATATA
1 TATATATAAATATATA
737562 TA
1 TA
737564 ACATGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TATATATAAATATATA
Found at i:739815 original size:22 final size:22
Alignment explanation
Indices: 739790--739837 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
739780 ATAAACTGAT
739790 TAAATGTTAAT-TTTGTTAATAA
1 TAAAT-TTAATATTTGTTAATAA
* *
739812 TAAA-TTACTATTTGTTAATCA
1 TAAATTTAATATTTGTTAATAA
739833 TAAAT
1 TAAAT
739838 ATCTTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.18
21 14 0.64
22 4 0.18
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (22 bp):
TAAATTTAATATTTGTTAATAA
Found at i:740757 original size:16 final size:16
Alignment explanation
Indices: 740708--740791 Score: 69
Period size: 16 Copynumber: 5.2 Consensus size: 16
740698 ATTTTATGTC
**
740708 ATTTAAATTTAAAGCA
1 ATTTAAATTTAAATTA
* * * *
740724 TTTTAAAATCAAAATA
1 ATTTAAATTTAAATTA
740740 ATTTAAATTTAAATTA
1 ATTTAAATTTAAATTA
* * *
740756 ATTAAAATTCATATTA
1 ATTTAAATTTAAATTA
* *
740772 ATTAAAATTTAAATCA
1 ATTTAAATTTAAATTA
740788 ATTT
1 ATTT
740792 GATTTCAAAC
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (16 bp):
ATTTAAATTTAAATTA
Found at i:740983 original size:26 final size:26
Alignment explanation
Indices: 740946--741008 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
740936 AAAAGTGTTT
*
740946 TTTTTTTAAATTTTTAACTTAATTTTA
1 TTTTTTT-AATTTATAACTTAATTTTA
*
740973 TTTTTTTAATTTATAATTTAATTTTA
1 TTTTTTTAATTTATAACTTAATTTTA
740999 TATATTTTTA
1 T-T-TTTTTA
741009 TAATTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 18 0.56
27 8 0.25
28 6 0.19
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTTTTAATTTATAACTTAATTTTA
Found at i:741358 original size:21 final size:22
Alignment explanation
Indices: 741317--741358 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
741307 GAAAATCAAA
741317 TTAGAAATCATTTTATTTAAAG
1 TTAGAAATCATTTTATTTAAAG
741339 TTAGAAATCATTTT-TTTAAA
1 TTAGAAATCATTTTATTTAAA
741359 AAGATTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (22 bp):
TTAGAAATCATTTTATTTAAAG
Found at i:744813 original size:2 final size:2
Alignment explanation
Indices: 744808--744846 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
744798 TGTGTGTGTG
*
744808 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
744847 TTTAAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:747862 original size:148 final size:149
Alignment explanation
Indices: 747586--747924 Score: 434
Period size: 151 Copynumber: 2.2 Consensus size: 149
747576 TTTTTTTTTT
* * *
747586 TTTTTTTCCGGTTGTTTTATCTTGGTCCTTCAGCTTATAGCTCAGGCATATTGATCAGGTCCATT
1 TTTTTTTCCGGTTGTTCTATCTTGGTCCTCCAGCTTACAGCTCAGGCATATTGATCAGGTCCATT
* * * *
747651 GACAATCCTTCCAATTTAGTCTGATCTCAGCACATGGTTTAATAGTAAATTGATGATGCTTTAGT
66 GACAATCCTTCC-A--TACTCTGATCTCAACACATGGATTAATAGTAAATTAATGATGCTTTAGT
747716 GTAATCTGGGT-AGAACTGCTA
128 GTAATCTGGGTAAGAACTGCTA
* * *
747737 TTGTTTTTCCGGTTGTTCTAT-TTTGTCCTCCAGCTTACAGTTCTGGCATATTGATCAGGTCCAT
1 TT-TTTTTCCGGTTGTTCTATCTTGGTCCTCCAGCTTACAGCTCAGGCATATTGATCAGGTCCAT
* * *
747801 TGAGAATGCTTTTCC-T-CTCTGATCTCAACACATGGATTAATAGTAAATTAATGATGTTTTAGT
65 TGACAAT-C-CTTCCATACTCTGATCTCAACACATGGATTAATAGTAAATTAATGATGCTTTAGT
*
747864 GTAATTTGGGTACAAGAACTGCTA
128 GTAATCTGGGT--AAGAACTGCTA
* *
747888 TTTTTTCCCAGTTGTTCTATCTTGGTCCTCCAGCTTA
1 TTTTTTTCCGGTTGTTCTATCTTGGTCCTCCAGCTTA
747925 TAAATACTCT
Statistics
Matches: 164, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
148 52 0.32
149 1 0.01
150 16 0.10
151 73 0.45
152 18 0.11
153 4 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (149 bp):
TTTTTTTCCGGTTGTTCTATCTTGGTCCTCCAGCTTACAGCTCAGGCATATTGATCAGGTCCATT
GACAATCCTTCCATACTCTGATCTCAACACATGGATTAATAGTAAATTAATGATGCTTTAGTGTA
ATCTGGGTAAGAACTGCTA
Found at i:750286 original size:6 final size:6
Alignment explanation
Indices: 750275--750314 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
750265 TCTCTCTATC
* * *
750275 TATATA TATATA TATGGA TATAGA TATAGA TATAGA TATA
1 TATAGA TATAGA TATAGA TATAGA TATAGA TATAGA TATA
750315 CCTTGCTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (6 bp):
TATAGA
Found at i:757637 original size:79 final size:79
Alignment explanation
Indices: 757358--757926 Score: 508
Period size: 79 Copynumber: 7.3 Consensus size: 79
757348 AGGGTTGGAG
* * * * *
757358 TATCCTCGATTGTGAAAAATCTGTATTTTAGAAATAAAATTGGGTTTGGAGTATCCCCTCGGAAA
1 TATCCTCGATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAA
**
757423 TTATAAGG-T----
66 TTACGAGGTTAGAA
* * * * *
757432 TATCCTCAATGGTGGAAAATCAGTATTTTAGAAATAAAATCGGGGTTGGAGTATTCACTCGAAAA
1 TATCCTCGATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCG-AAA
* * * *
757497 ATAACGGGGTTGGAG
65 ATTACGAGGTTAGAA
* * * * * * * * * *
757512 TATCCCCGATTGTGGAAAATCGATACTTTGGAAACAAAACCAGGGTTGGAGTATCCCCTCGGAAA
1 TATCCTCGATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAA
757577 TTACGAGGTTAGAA
66 TTACGAGGTTAGAA
* * * *
757591 TGTCCTCGATGGTGGAAAATCGGTATTTTAAAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
1 TATCCTCGATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAA
* * *
757656 TAACAAGGTTAGAG
66 TTACGAGGTTAGAA
* * ** * *
757670 TATCCCCGATTGTGAAAAATCAATATTTTGGAAACAAAATC-GGGTTGGAGTATCCCCTCGAAAA
1 TATCCTCGATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAA
757734 TTACG-GGATTAGAA
66 TTACGAGG-TTAGAA
* *
757748 TATCC-CTAATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAA
1 TATCCTC-GATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTC-GAA
* * *
757812 AATAAC-AGGGTTGGAG
64 AATTACGA-GGTTAGAA
* * * * * * * ** **
757828 TATCCCCGATTGTGAAAAATTGATATTTTGGAAACAAAATCGAGGTTGGAGTATTTCCTTAAAAA
1 TATCCTCGATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAA
*
757893 TTACGGGGTTAGAA
66 TTACGAGGTTAGAA
* *
757907 TATCTTCGATGGTGGAAAAT
1 TATCCTCGATGGTGAAAAAT
757927 TAGTGCAAAT
Statistics
Matches: 395, Mismatches: 86, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
74 53 0.13
75 7 0.02
76 1 0.00
77 3 0.01
78 63 0.16
79 157 0.40
80 108 0.27
81 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (79 bp):
TATCCTCGATGGTGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAA
TTACGAGGTTAGAA
Found at i:757966 original size:15 final size:15
Alignment explanation
Indices: 757946--757989 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
757936 TGAGGATAGC
757946 AAAAAAAAAAAAATA
1 AAAAAAAAAAAAATA
*
757961 AAAAAATAAAAAATA
1 AAAAAAAAAAAAATA
* *
757976 AAATAAAATAAAAT
1 AAAAAAAAAAAAAT
757990 TATTATGCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAAAAAAAAAAATA
Found at i:759771 original size:58 final size:58
Alignment explanation
Indices: 759700--759826 Score: 195
Period size: 58 Copynumber: 2.2 Consensus size: 58
759690 TGCTTTGTTC
*
759700 TGCTTCATGTGTTCTTGGCCCTT-ATCTTCTTCCATGTTTGT-AGCTTTTGCCCGTGTAT
1 TGCTTCACGTGTTCTTGG-CCTTCATCTTCTTCCATGTTT-TAAGCTTTTGCCCGTGTAT
*
759758 TGCTTCACGTGTTCTTGGCCTTCATCTTCTTCCATGTTTTACAGCTTTTGCTCGTGTAT
1 TGCTTCACGTGTTCTTGGCCTTCATCTTCTTCCATGTTTTA-AGCTTTTGCCCGTGTAT
759817 TGCTTCACGT
1 TGCTTCACGT
759827 TACTTTGCTT
Statistics
Matches: 64, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
57 5 0.08
58 33 0.52
59 26 0.41
ACGTcount: A:0.09, C:0.25, G:0.18, T:0.47
Consensus pattern (58 bp):
TGCTTCACGTGTTCTTGGCCTTCATCTTCTTCCATGTTTTAAGCTTTTGCCCGTGTAT
Found at i:759993 original size:19 final size:17
Alignment explanation
Indices: 759972--760064 Score: 80
Period size: 19 Copynumber: 5.1 Consensus size: 17
759962 TTTTTAAAGA
759972 TTTTGATTTTTTTATTT
1 TTTTGATTTTTTTATTT
* *
759989 AATTTTCATTAACTTTTA-TT
1 --TTTTGATT--TTTTTATTT
*
760009 TTTTGATTATTTTATTT
1 TTTTGATTTTTTTATTT
760026 TTTTGATTTTAATTTATTT
1 TTTTGATTTT--TTTATTT
760045 TTTTGATTATTTTTTATTT
1 TTTTGA-T-TTTTTTATTT
760064 T
1 T
760065 AATTTTAAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
16 5 0.08
17 11 0.18
18 7 0.11
19 28 0.45
20 3 0.05
21 8 0.13
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTTGATTTTTTTATTT
Found at i:760022 original size:37 final size:35
Alignment explanation
Indices: 759972--760057 Score: 95
Period size: 37 Copynumber: 2.4 Consensus size: 35
759962 TTTTTAAAGA
*
759972 TTTTGATTTTTTTATTTAATTTTCA-TTAACTTT-TATT
1 TTTTGATTATTTTATTT--TTTTCATTTAA-TTTAT-TT
*
760009 TTTTGATTATTTTATTTTTTTGATTTTAATTTATTT
1 TTTTGATTATTTTATTTTTTTCA-TTTAATTTATTT
760045 TTTTGATTATTTT
1 TTTTGATTATTTT
760058 TTATTTTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
35 5 0.11
36 18 0.41
37 21 0.48
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (35 bp):
TTTTGATTATTTTATTTTTTTCATTTAATTTATTT
Found at i:760042 original size:35 final size:35
Alignment explanation
Indices: 760003--760072 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
759993 TTCATTAACT
* *
760003 TTTA-TTTTTTGATTATTTTATTTTTTTGATTTTAA
1 TTTATTTTTTTGATTATTTT-TTATTTTAATTTTAA
760038 TTTATTTTTTTGATTATTTTTTATTTTAATTTTAA
1 TTTATTTTTTTGATTATTTTTTATTTTAATTTTAA
760073 AAAAATCGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 17 0.53
36 15 0.47
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.74
Consensus pattern (35 bp):
TTTATTTTTTTGATTATTTTTTATTTTAATTTTAA
Found at i:760781 original size:43 final size:43
Alignment explanation
Indices: 760715--760805 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 43
760705 AGAAGAATGA
* *
760715 TAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACT
1 TAAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGACT
* * *
760758 TAAAGGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGACT
1 TAAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGACT
760801 TAAAG
1 TAAAG
760806 ATGACAAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (43 bp):
TAAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGACT
Found at i:760837 original size:52 final size:52
Alignment explanation
Indices: 760759--760912 Score: 143
Period size: 52 Copynumber: 3.0 Consensus size: 52
760749 TATTGGACTT
* *
760759 AAAGGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGAC
1 AAAGGCGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC
* * * *
760811 AAAGGCGCCAA-GATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTG-C
1 AAAGGCGCCAATG-TGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC
* ** * * * * *
760862 GAAGAATGTCAATGTGCTGATTCAAGGCTAGCGACA-TAGACTTGAAGATGA
1 AAAG-GCGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGA
760913 GAAGAATGCC
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
51 15 0.18
52 66 0.80
53 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (52 bp):
AAAGGCGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC
Found at i:761171 original size:61 final size:61
Alignment explanation
Indices: 760965--761180 Score: 199
Period size: 61 Copynumber: 3.6 Consensus size: 61
760955 TTAGGGATGT
* * * * * *
760965 TAAAGATGCTAATATGTTGATTTAAGGCTAGC-AGCATCGGGCTTGAAGATGAGAAAAACTGA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-CATCGGGCTTGAAGATGAG-AAAACTAA
* * * * * * * **
761027 TAAATGTGCCAATATGCTGATTCAAGG-TAGTGATATTGGGCTTAAAAGA-AAGAAGATTTAA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGGCTT-GAAGATGAGAA-AACTAA
* *
761088 -AAA-GTGCCAATGTGCTGATTCAAGGCCAACGACATCGGGCTTGAAGATGAGAAAACTAA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGGCTTGAAGATGAGAAAACTAA
*
761147 TAAAGGTGCTAATATGCTGATTCAAGGCCAGCGA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
761181 TACTGGACTT
Statistics
Matches: 121, Mismatches: 26, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
59 29 0.24
60 23 0.19
61 42 0.35
62 27 0.22
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (61 bp):
TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATCGGGCTTGAAGATGAGAAAACTAA
Found at i:761322 original size:32 final size:31
Alignment explanation
Indices: 761262--761369 Score: 94
Period size: 32 Copynumber: 3.5 Consensus size: 31
761252 CACCAACTTG
*
761262 TGTGGGCTTTTGAAAGGGTTACCGCCAGTTCGA
1 TGTGGGC-TTTGAAAGGGTTACCACCAGTT-GA
* * *
761295 -GTGGGCTTTGAGAAGGTTTGCCACCAGTTTA
1 TGTGGGCTTTGA-AAGGGTTACCACCAGTTGA
* * * * *
761326 TGTGGGCTTTGAAGGGGTTGCCACAACTT-T
1 TGTGGGCTTTGAAAGGGTTACCACCAGTTGA
761356 TGTGGGCTTTGAAA
1 TGTGGGCTTTGAAA
761370 AGGTGCCACT
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
30 13 0.21
31 19 0.30
32 31 0.49
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.32
Consensus pattern (31 bp):
TGTGGGCTTTGAAAGGGTTACCACCAGTTGA
Found at i:761360 original size:30 final size:31
Alignment explanation
Indices: 761295--761378 Score: 100
Period size: 30 Copynumber: 2.7 Consensus size: 31
761285 GCCAGTTCGA
* * *
761295 GTGGGCTTTGAGAAGGTTTGCCACCAGTTTAT
1 GTGGGCTTTGA-AAGGGTTGCCACAACTTTAT
*
761327 GTGGGCTTTGAAGGGGTTGCCACAACTTT-T
1 GTGGGCTTTGAAAGGGTTGCCACAACTTTAT
*
761357 GTGGGCTTTGAAAAGG-TGCCAC
1 GTGGGCTTTGAAAGGGTTGCCAC
761379 TGACTCGTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
29 6 0.13
30 15 0.33
31 14 0.30
32 11 0.24
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.31
Consensus pattern (31 bp):
GTGGGCTTTGAAAGGGTTGCCACAACTTTAT
Found at i:761663 original size:28 final size:28
Alignment explanation
Indices: 761602--761675 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
761592 ATTATATAGT
*
761602 AAGTGCCACTGA-TTGCGGACTTCGAAA
1 AAGTGCCACTGACTTGTGGACTTCGAAA
*
761629 AAATGCCACTGACTTGTGGACTTC-AAA
1 AAGTGCCACTGACTTGTGGACTTCGAAA
*
761656 AAGGTGCCACTGACTAGTGG
1 AA-GTGCCACTGACTTGTGG
761676 GCTTTGAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
27 16 0.39
28 25 0.61
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.23
Consensus pattern (28 bp):
AAGTGCCACTGACTTGTGGACTTCGAAA
Found at i:772923 original size:20 final size:20
Alignment explanation
Indices: 772898--773021 Score: 106
Period size: 20 Copynumber: 5.8 Consensus size: 20
772888 TTTTCACAAT
772898 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
772918 TTGTATCGATACATTCTGGGTTTACCCA
1 TTGTATCGATACA-T-T--G-TT---CA
* *
772946 GATGTATCGATACATTTTTCA
1 -TTGTATCGATACATTGTTCA
*
772967 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
*
772987 TTGTATCGATACATAT-TACA
1 TTGTATCGATACAT-TGTTCA
*
773007 ATGTATCGATACATT
1 TTGTATCGATACATT
773022 CAGGCATTTT
Statistics
Matches: 86, Mismatches: 8, Indels: 21
0.75 0.07 0.18
Matches are distributed among these distances:
19 1 0.01
20 59 0.69
21 4 0.05
22 1 0.01
24 3 0.03
25 2 0.02
27 1 0.01
28 3 0.03
29 12 0.14
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:774881 original size:38 final size:39
Alignment explanation
Indices: 774835--774923 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 39
774825 AAAAGATTTT
*
774835 TTTG-AATTTTTTT-AACATTT-TTCTCAAAAAGTTATAA
1 TTTGCAATTTTTTTGAA-ATTTCTTCTCAAAAAGGTATAA
* **
774872 TTTGCAATTTTTTTGAAATTTCCTTTTCGTAAAGGTATAA
1 TTTGCAATTTTTTTGAAATTT-CTTCTCAAAAAGGTATAA
774912 TTTGCAATTTTT
1 TTTGCAATTTTT
774924 CAATAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
37 4 0.09
38 13 0.30
39 2 0.05
40 25 0.57
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (39 bp):
TTTGCAATTTTTTTGAAATTTCTTCTCAAAAAGGTATAA
Found at i:775450 original size:79 final size:79
Alignment explanation
Indices: 775314--775647 Score: 347
Period size: 79 Copynumber: 4.3 Consensus size: 79
775304 TTTTCATCTC
* * * * *
775314 GGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCTAACCCCGATTTTAGTTCTAAAATACC
1 GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAATACC
775379 AATTTTTCACAATA
66 AATTTTTCACAATA
** ** *
775393 GGGGATACTCCAACCCCGTTATTTCCAAGGAAATACTTTAACCCC-AGCTTTATTTCT-AAATCA
1 GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGA-TTTTATTTCTAAAAT-A
* * *
775456 TCGATTTTTCACAATC
64 CCAATTTTTCACAATA
* * *
775472 GGGGATACTCCAACCCCGTTATTTTCAAGGGG-TACTCCAACCCCGATTTCATTT-TCAGAATAC
1 GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCT-AAAATAC
* *
775535 CGATTTTT-ATAATCA
65 CAATTTTTCACAAT-A
* * ** *
775550 -GGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCTGATTTTATTTCTGGAACACC
1 GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAATACC
* * *
775614 AATTTTCCATAATC
66 AATTTTTCACAATA
*
775628 GGGGATACTCCAGCCCCGTT
1 GGGGATACTCCAACCCCGTT
775648 GTTATCTCCA
Statistics
Matches: 212, Mismatches: 33, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
77 34 0.16
78 61 0.29
79 117 0.55
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAATACC
AATTTTTCACAATA
Found at i:775592 original size:156 final size:158
Alignment explanation
Indices: 775312--775647 Score: 405
Period size: 156 Copynumber: 2.1 Consensus size: 158
775302 ATTTTTCATC
* * * *
775312 TCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCTAACCCCGATTTTAGTTCTAAAATA
1 TCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTCAGTTCTAAAATA
**
775377 CCAATTTTTCACAATAGGGGATACTCCAACCCCGTTATTTCCAAGGAAATACTTTAACCCCAG-C
66 CCAATTTTTCACAATAGGGGATACTCCAACCCCGTTATTTCCAAGGAAATACTCCAA-CCCAGAC
* * *
775441 TTTATTTCT-AAATCATCGATTTTTCACAA
130 TTTATTTCTGAAA-CACCAATTTTCCACAA
* *
775470 TCGGGGATACTCCAACCCCGTTATTTTCAAGGGG-TACTCCAACCCCGATTTCA-TTTTCAGAAT
1 TCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTCAGTTCT-AAAAT
* * * ** *
775533 ACCGATTTTT-ATAATCA-GGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCTGA
65 ACCAATTTTTCACAAT-AGGGGATACTCCAACCCCGTTATTTCCAAGGAAATACTCCAACCCAGA
* * *
775596 TTTTATTTCTGGAACACCAATTTTCCATAA
129 CTTTATTTCTGAAACACCAATTTTCCACAA
*
775626 TCGGGGATACTCCAGCCCCGTT
1 TCGGGGATACTCCAACCCCGTT
775648 GTTATCTCCA
Statistics
Matches: 153, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
155 4 0.03
156 84 0.55
157 33 0.22
158 32 0.21
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (158 bp):
TCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTCAGTTCTAAAATA
CCAATTTTTCACAATAGGGGATACTCCAACCCCGTTATTTCCAAGGAAATACTCCAACCCAGACT
TTATTTCTGAAACACCAATTTTCCACAA
Found at i:778751 original size:159 final size:159
Alignment explanation
Indices: 778557--779137 Score: 716
Period size: 159 Copynumber: 3.7 Consensus size: 159
778547 AGAGGAAAAA
* * * * * *
778557 GGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTAAAAATAAAATCAGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGATATTTTGAAAACAAAATCGGGGTTGGAGTATCCC
*
778622 CTCAGAAATTATAGGG-TTAGAATATCCCCGATGGTGGAAAATCAGTATTTTAGAAATAAAATCG
66 CTCAGAAATTATAGGGATTAGAATATCCCCGATGGTGAAAAATC-GTATTTTAGAAATAAAATCG
*
778686 AGGTTGGAGTATTCACTCGAAAAATAACGG
130 AGGTTGGAGTATTCCCTCGAAAAATAACGG
* * *
778716 GGTTGGAGTATTCCCGATTGTGGAAAATCGATATTTTGAAAACAAAATCGGGGTTGGAGTATCTC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGATATTTTGAAAACAAAATCGGGGTTGGAGTATCCC
** *
778781 CTTGGAAATTAT-GGGCTTAGAATATCCCCGATGGTGAAAAATCGATATTTTAGAAATAAAATCG
66 CTCAGAAATTATAGGGATTAGAATATCCCCGATGGTGAAAAATCG-TATTTTAGAAATAAAATCG
* *
778845 GGGTTGGAGTATTCCCTCG-AAAATAATGG
130 AGGTTGGAGTATTCCCTCGAAAAATAACGG
* * **
778874 GGTTGGAGTATCCTCGATTGTGAAAAATCGATATTTTGGAAACAAAATCGGGACTGGAGTAT-CC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGATATTTTGAAAACAAAATCGGGGTTGGAGTATCCC
* * * * * *
778938 CTAAAAAATTACAGGG-TTAGAATATCCTCGATAGTG---AATCGGTATTTTAAAAATAAAATC-
66 CTCAGAAATTATAGGGATTAGAATATCCCCGATGGTGAAAAATC-GTATTTTAGAAATAAAATCG
* *
778998 AGGGTTGGAGTATCCCCTCGAAAAAAAACGG
130 A-GGTTGGAGTATTCCCTCGAAAAATAACGG
* * * * * *
779029 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTGGAAACAAAATGGGGGTTGGAGTGTTCT
1 GGTTGGAGTATCCCCGATTGTGAAAAATCGATATTTTGAAAACAAAATCGGGGTTGGAGTATCCC
* *
779094 CTC-GAAAATTA-CGGGATTAGAATATCCTCGATGGTGAAAAATCG
66 CTCAG-AAATTATAGGGATTAGAATATCCCCGATGGTGAAAAATCG
779138 GTGCAAATGA
Statistics
Matches: 366, Mismatches: 44, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
154 38 0.10
155 68 0.19
156 28 0.08
157 27 0.07
158 73 0.20
159 132 0.36
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (159 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATCGATATTTTGAAAACAAAATCGGGGTTGGAGTATCCC
CTCAGAAATTATAGGGATTAGAATATCCCCGATGGTGAAAAATCGTATTTTAGAAATAAAATCGA
GGTTGGAGTATTCCCTCGAAAAATAACGG
Found at i:778752 original size:80 final size:80
Alignment explanation
Indices: 778557--779137 Score: 490
Period size: 79 Copynumber: 7.4 Consensus size: 80
778547 AGAGGAAAAA
* * * * * *
778557 GGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTAAAAATAAAATC-AGGGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAATCGA-GGTTGGAGTATTC
* * **
778621 CCTC-AGAAATTATAG
65 CCTCGAAAAATAACGG
* * *
778636 GGTTAGAATATCCCCGATGGTGGAAAATC-AGTATTTTAGAAATAAAATCGAGGTTGGAGTATTC
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGA-TATTTTAGAAATAAAATCGAGGTTGGAGTATTC
*
778700 ACTCGAAAAATAACGG
65 CCTCGAAAAATAACGG
* * *
778716 GGTTGGAGTATTCCCGATTGTGGAAAATCGATATTTT-GAAAACAAAATCGGGGTTGGAGTA-TC
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAG-AAATAAAATCGAGGTTGGAGTATTC
* * * *
778779 TCCTTG-GAAATTATGG
65 -CCTCGAAAAATAACGG
* * * * * *
778795 GCTTAGAATATCCCCGATGGTGAAAAATCGATATTTTAGAAATAAAATCGGGGTTGGAGTATTCC
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAATCGAGGTTGGAGTATTCC
*
778860 CTCG-AAAATAATGG
66 CTCGAAAAATAACGG
* * * * *
778874 GGTTGGAGTATCCTCGATTGTGAAAAATCGATATTTTGGAAACAAAATCG-GGACTGGAGTA-TC
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAATCGAGG-TTGGAGTATTC
* * *
778937 CCT-AAAAAATTACAG
65 CCTCGAAAAATAACGG
* * * * * * *
778952 GGTTAGAATATCCTCGATAGT-G--AATCGGTATTTTAAAAATAAAATC-AGGGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAATCGA-GGTTGGAGTATTC
*
779013 CCTCGAAAAAAAACGG
65 CCTCGAAAAATAACGG
* * * * * *
779029 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTGGAAACAAAATGGGGGTTGGAGTGTTCT
1 GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAATCGAGGTTGGAGTATTCC
*
779094 CTCG-AAAATTACGG
66 CTCGAAAAATAACGG
* * * * * *
779108 GATTAGAATATCCTCGATGGTGAAAAATCG
1 GGTTGGAGTATCCCCGATTGTGGAAAATCG
779138 GTGCAAATGA
Statistics
Matches: 402, Mismatches: 82, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
75 27 0.07
76 6 0.01
77 25 0.06
78 33 0.08
79 211 0.52
80 99 0.25
81 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (80 bp):
GGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAATCGAGGTTGGAGTATTCC
CTCGAAAAATAACGG
Found at i:779129 original size:313 final size:316
Alignment explanation
Indices: 778557--779137 Score: 841
Period size: 313 Copynumber: 1.8 Consensus size: 316
778547 AGAGGAAAAA
* * * *
778557 GGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTAAAAATAAAATCAGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCAATTGTGAAAAATCGATATTTTAAAAACAAAATCAGGGCTGGAGTATCCC
* * * * *
778622 CTCAGAAATTATAGGGTTAGAATATCCCCGATGGTGGAAAATCAGTATTTTAGAAATAAAATCGA
66 CTAAAAAATTACAGGGTTAGAATATCCCCGATAGTGG-AAATCAGTATTTTAAAAATAAAATCGA
* * *
778687 GGTTGGAGTATTCACTCGAAAAATAACGGGGTTGGAGTATTCCCGATTGTGGAAAATCGATATTT
130 GGTTGGAGTATCCACTCGAAAAAAAACGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATATTT
* * * *
778752 TGAAAACAAAATCGGGGTTGGAGTATCTCCTTGGAAATTATGGGCTTAGAATATCCCCGATGGTG
195 TGAAAACAAAATCGGGGTTGGAGTATCTCCTCGAAAATTACGGGATTAGAATATCCCCGATGGTG
778817 AAAAATCGATATTTTAGAAATAAAATCGGGGTTGGAGTATTCCCTCGAAAATAATGG
260 AAAAATCGATATTTTAGAAATAAAATCGGGGTTGGAGTATTCCCTCGAAAATAATGG
* * **
778874 GGTTGGAGTATCCTCGATTGTGAAAAATCGATATTTTGGAAACAAAATC-GGGACTGGAGTAT-C
1 GGTTGGAGTATCCCCAATTGTGAAAAATCGATATTTTAAAAACAAAATCAGGG-CTGGAGTATCC
* *
778937 CCTAAAAAATTACAGGGTTAGAATATCCTCGATAGT-G-AATCGGTATTTTAAAAATAAAATC-A
65 CCTAAAAAATTACAGGGTTAGAATATCCCCGATAGTGGAAATCAGTATTTTAAAAATAAAATCGA
*
778999 GGGTTGGAGTATCCCCTCGAAAAAAAACGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATATT
130 -GGTTGGAGTATCCACTCGAAAAAAAACGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATATT
* * * *
779064 TTGGAAACAAAATGGGGGTTGGAGTGT-TCTCTCGAAAATTACGGGATTAGAATATCCTCGATGG
194 TTGAAAACAAAATCGGGGTTGGAGTATCTC-CTCGAAAATTACGGGATTAGAATATCCCCGATGG
779128 TGAAAAATCG
258 TGAAAAATCG
779138 GTGCAAATGA
Statistics
Matches: 234, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
312 3 0.01
313 145 0.62
315 1 0.00
316 35 0.15
317 50 0.21
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (316 bp):
GGTTGGAGTATCCCCAATTGTGAAAAATCGATATTTTAAAAACAAAATCAGGGCTGGAGTATCCC
CTAAAAAATTACAGGGTTAGAATATCCCCGATAGTGGAAATCAGTATTTTAAAAATAAAATCGAG
GTTGGAGTATCCACTCGAAAAAAAACGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTT
GAAAACAAAATCGGGGTTGGAGTATCTCCTCGAAAATTACGGGATTAGAATATCCCCGATGGTGA
AAAATCGATATTTTAGAAATAAAATCGGGGTTGGAGTATTCCCTCGAAAATAATGG
Found at i:779179 original size:3 final size:3
Alignment explanation
Indices: 779168--779228 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
779158 AAAATTAAAA
779168 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
779215 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
779229 AATTATTATG
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:781004 original size:58 final size:59
Alignment explanation
Indices: 780932--781180 Score: 328
Period size: 58 Copynumber: 4.1 Consensus size: 59
780922 GCTTTGTTCA
780932 GCTTCA-TGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGT-AGCTTTTGCTCGTGTATT
1 GCTTCACTGTGTTCTTGGCCCTCATCTTCTTCCATGTTT-TAAGCTTTTGCTCGTGTATT
*
780990 GCTTCACT-TGTTCTTGGCCTTCATCTTCTTCCATGTTTTACAGCTTTTGCTCGTGTATT
1 GCTTCACTGTGTTCTTGGCCCTCATCTTCTTCCATGTTTTA-AGCTTTTGCTCGTGTATT
*
781049 GCTTCACGGCTTCATGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGT-AGCTTTTGCCCGTGTA
1 GCTTCA------C-TGTGTTCTTGGCCCTCATCTTCTTCCATGTTT-TAAGCTTTTGCTCGTGTA
781113 TT
58 TT
* *
781115 GCTTCAC-GTGTTCTTGGCCTTCATCTTCTTCCATATTTTACAGCTTTTGCTCGTGTATT
1 GCTTCACTGTGTTCTTGGCCCTCATCTTCTTCCATGTTTTA-AGCTTTTGCTCGTGTATT
781174 GCTTCAC
1 GCTTCAC
781181 GTTACTTTGC
Statistics
Matches: 171, Mismatches: 6, Indels: 27
0.84 0.03 0.13
Matches are distributed among these distances:
57 2 0.01
58 64 0.37
59 49 0.29
60 1 0.01
65 1 0.01
66 24 0.14
67 29 0.17
68 1 0.01
ACGTcount: A:0.10, C:0.26, G:0.17, T:0.47
Consensus pattern (59 bp):
GCTTCACTGTGTTCTTGGCCCTCATCTTCTTCCATGTTTTAAGCTTTTGCTCGTGTATT
Found at i:781070 original size:67 final size:67
Alignment explanation
Indices: 780990--781181 Score: 262
Period size: 67 Copynumber: 3.0 Consensus size: 67
780980 CTCGTGTATT
780990 GCTTCACT-TGTTCTTGGCCTTCATCTTCTTCCATGTTTTACAGCTTTTGCTCGTGTATTGCTTC
1 GCTTCA-TGTGTTCTTGGCCTTCATCTTCTTCCATGTTTTACAGCTTTTGCTCGTGTATTGCTTC
781054 ACG
65 ACG
* *
781057 GCTTCATGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGT--AGCTTTTGCCCGTGTATTGCTTC
1 GCTTCATGTGTTCTTGGCCTTCATCTTCTTCCATGTTT-TACAGCTTTTGCTCGTGTATTGCTTC
781120 A--
65 ACG
*
781121 ----C--GTGTTCTTGGCCTTCATCTTCTTCCATATTTTACAGCTTTTGCTCGTGTATTGCTTCA
1 GCTTCATGTGTTCTTGGCCTTCATCTTCTTCCATGTTTTACAGCTTTTGCTCGTGTATTGCTTCA
781180 CG
66 CG
781182 TTACTTTGCA
Statistics
Matches: 114, Mismatches: 5, Indels: 18
0.83 0.04 0.13
Matches are distributed among these distances:
57 1 0.01
58 29 0.25
59 23 0.20
60 1 0.01
66 24 0.21
67 35 0.31
68 1 0.01
ACGTcount: A:0.10, C:0.27, G:0.17, T:0.46
Consensus pattern (67 bp):
GCTTCATGTGTTCTTGGCCTTCATCTTCTTCCATGTTTTACAGCTTTTGCTCGTGTATTGCTTCA
CG
Found at i:781154 original size:125 final size:125
Alignment explanation
Indices: 780932--781181 Score: 473
Period size: 125 Copynumber: 2.0 Consensus size: 125
780922 GCTTTGTTCA
*
780932 GCTTCATGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGTAGCTTTTGCTCGTGTATTGCTTCAC
1 GCTTCATGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGTAGCTTTTGCCCGTGTATTGCTTCAC
* *
780997 TTGTTCTTGGCCTTCATCTTCTTCCATGTTTTACAGCTTTTGCTCGTGTATTGCTTCACG
66 GTGTTCTTGGCCTTCATCTTCTTCCATATTTTACAGCTTTTGCTCGTGTATTGCTTCACG
781057 GCTTCATGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGTAGCTTTTGCCCGTGTATTGCTTCAC
1 GCTTCATGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGTAGCTTTTGCCCGTGTATTGCTTCAC
781122 GTGTTCTTGGCCTTCATCTTCTTCCATATTTTACAGCTTTTGCTCGTGTATTGCTTCACG
66 GTGTTCTTGGCCTTCATCTTCTTCCATATTTTACAGCTTTTGCTCGTGTATTGCTTCACG
781182 TTACTTTGCA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 122 1.00
ACGTcount: A:0.10, C:0.26, G:0.18, T:0.46
Consensus pattern (125 bp):
GCTTCATGTGTTCTTGGCCCTCATCTTCTTCCATGTTTGTAGCTTTTGCCCGTGTATTGCTTCAC
GTGTTCTTGGCCTTCATCTTCTTCCATATTTTACAGCTTTTGCTCGTGTATTGCTTCACG
Found at i:781385 original size:9 final size:9
Alignment explanation
Indices: 781368--781461 Score: 74
Period size: 9 Copynumber: 10.9 Consensus size: 9
781358 AACTTTTATT
*
781368 TTTTGATTA
1 TTTTAATTA
781377 TTTTAATTA
1 TTTTAATTA
781386 TTTT-A--A
1 TTTTAATTA
781392 TTTTAATTAA
1 TTTTAATT-A
781402 TTTTAATTAA
1 TTTTAATT-A
*
781412 TTTTAATTT
1 TTTTAATTA
*
781421 TTTTGATTA
1 TTTTAATTA
*
781430 TTTT-TTTA
1 TTTTAATTA
* *
781438 TTTT-TTTG
1 TTTTAATTA
781446 TTTT-ATTA
1 TTTTAATTA
781454 TTTTAATT
1 TTTTAATT
781462 TTTAAAAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
6 5 0.07
7 1 0.01
8 21 0.29
9 26 0.36
10 19 0.26
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (9 bp):
TTTTAATTA
Found at i:781388 original size:20 final size:20
Alignment explanation
Indices: 781363--781443 Score: 63
Period size: 19 Copynumber: 4.5 Consensus size: 20
781353 TCATTAACTT
781363 TTATTTTTTGATTATTTTAA
1 TTATTTTTTGATTATTTTAA
781383 TTA--TTTT-A--ATTTTAA
1 TTATTTTTTGATTATTTTAA
* *
781398 TTA-ATTTTAATTAATTTTAA
1 TTATTTTTTGATT-ATTTTAA
*
781418 -T-TTTTTTGATTATTTT-T
1 TTATTTTTTGATTATTTTAA
781435 TTATTTTTT
1 TTATTTTTT
781444 TGTTTTATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 17
0.71 0.04 0.24
Matches are distributed among these distances:
15 10 0.20
16 4 0.08
17 2 0.04
18 10 0.20
19 14 0.28
20 10 0.20
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (20 bp):
TTATTTTTTGATTATTTTAA
Found at i:781396 original size:15 final size:16
Alignment explanation
Indices: 781376--781409 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
781366 TTTTTTGATT
781376 ATTTTAATT-ATTTTA
1 ATTTTAATTAATTTTA
781391 ATTTTAATTAATTTTA
1 ATTTTAATTAATTTTA
781407 ATT
1 ATT
781410 AATTTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTTAATTAATTTTA
Found at i:781403 original size:10 final size:10
Alignment explanation
Indices: 781388--781419 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
781378 TTTAATTATT
781388 TTAATTTTAA
1 TTAATTTTAA
781398 TTAATTTTAA
1 TTAATTTTAA
781408 TTAATTTTAA
1 TTAATTTTAA
781418 TT
1 TT
781420 TTTTTGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:781433 original size:10 final size:10
Alignment explanation
Indices: 781392--781442 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
781382 ATTATTTTAA
*
781392 TTTTAATTAA
1 TTTTAATTAT
*
781402 TTTTAATTAA
1 TTTTAATTAT
781412 TTTTAATT-T
1 TTTTAATTAT
*
781421 TTTTGATTAT
1 TTTTAATTAT
781431 TTTT--TTAT
1 TTTTAATTAT
781439 TTTT
1 TTTT
781443 TTGTTTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
8 8 0.21
9 7 0.18
10 23 0.61
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (10 bp):
TTTTAATTAT
Found at i:781444 original size:20 final size:22
Alignment explanation
Indices: 781411--781464 Score: 76
Period size: 20 Copynumber: 2.5 Consensus size: 22
781401 ATTTTAATTA
781411 ATTTTAATTTTTTTG-ATTATT
1 ATTTTAATTTTTTTGTATTATT
* *
781432 -TTTTTATTTTTTTGTTTTATT
1 ATTTTAATTTTTTTGTATTATT
781453 ATTTTAATTTTT
1 ATTTTAATTTTT
781465 AAAAAATCGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 13 0.46
21 5 0.18
22 10 0.36
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.78
Consensus pattern (22 bp):
ATTTTAATTTTTTTGTATTATT
Found at i:790212 original size:57 final size:57
Alignment explanation
Indices: 790147--790291 Score: 163
Period size: 58 Copynumber: 2.5 Consensus size: 57
790137 CGTGGGAGTC
* * *
790147 CTTAGATCATAAAAGAT-ACCTAAATGACCC-ATCATATATGA-ATTTTACATAAAAGTT
1 CTTAGATCATAAAA-ATAACCTAAATGACCCTAACATAAATGAGA-TTGA-ATAAAAGTT
*
790204 -TGTAGATCATGAAAAATAACCTAAATGACCCTAACGTAAATGAGATTGAATAAAAGTT
1 CT-TAGATCAT-AAAAATAACCTAAATGACCCTAACATAAATGAGATTGAATAAAAGTT
*
790262 CTTAGATCATAAAAAATGACCTAAATGACC
1 CTTAGATCAT-AAAAATAACCTAAATGACC
790292 ATTTGCATTA
Statistics
Matches: 76, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
56 1 0.01
57 10 0.13
58 52 0.68
59 12 0.16
60 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.28
Consensus pattern (57 bp):
CTTAGATCATAAAAATAACCTAAATGACCCTAACATAAATGAGATTGAATAAAAGTT
Found at i:790524 original size:58 final size:58
Alignment explanation
Indices: 790458--790568 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
790448 AAAGTACCTA
* *
790458 AAATGCATGAAATGATA-AAAAAGTCTT-TAAATCATAGAAAATGACTTTAATATCTTTG
1 AAATGCATGAAATGATATAAAAA-T-TTATAAATAATAGAAAATGACTTAAATATCTTTG
* * *
790516 AAATGCATGCAATGATATAATAATTTATAAATAATAGAAAATGGCTTAAATAT
1 AAATGCATGAAATGATATAAAAATTTATAAATAATAGAAAATGACTTAAATAT
790569 AACTAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 2 0.04
58 40 0.87
59 4 0.09
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (58 bp):
AAATGCATGAAATGATATAAAAATTTATAAATAATAGAAAATGACTTAAATATCTTTG
Found at i:798477 original size:13 final size:13
Alignment explanation
Indices: 798459--798515 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
798449 CATAAAGTGT
798459 TGTATCGATACAA
1 TGTATCGATACAA
798472 TGTATCGATACATAA
1 TGTATCGATAC--AA
798487 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
798504 TGTATCGATACA
1 TGTATCGATACA
798516 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:798494 original size:32 final size:32
Alignment explanation
Indices: 798439--798536 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
798429 TTCAACGATT
798439 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
798472 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
798504 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
798536 T
1 T
798537 ATAAGCTACT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 51 0.80
33 13 0.20
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:798496 original size:19 final size:18
Alignment explanation
Indices: 798437--798534 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
798427 ATTTCAACGA
798437 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
798456 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
798472 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
798488 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
798504 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
798520 TTTTGTATCGATACA
1 -TTTGTATCGATACA
798535 ATATAAGCTA
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
15 4 0.06
17 4 0.06
19 24 0.36
20 12 0.18
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:798639 original size:52 final size:52
Alignment explanation
Indices: 798597--798725 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
798587 CACTGATCTT
798597 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
798649 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
798701 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
798726 TCATATTTCG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:803072 original size:22 final size:22
Alignment explanation
Indices: 803038--803080 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
803028 ATCTTTGCCC
803038 TCAAAATGATAAACAAA-AAAAT
1 TCAAAATGATAAA-AAAGAAAAT
**
803060 TCAAAATTTTAAAAAAGAAAA
1 TCAAAATGATAAAAAAGAAAA
803081 CCTTTGTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.21
Consensus pattern (22 bp):
TCAAAATGATAAAAAAGAAAAT
Found at i:805492 original size:42 final size:40
Alignment explanation
Indices: 805444--805567 Score: 123
Period size: 42 Copynumber: 3.0 Consensus size: 40
805434 ATTTAGATTA
805444 ATTTAATTTTAATTATTATTTATATACTAAAATAATATTTTT
1 ATTTAATTTTAATTATTATTTA-ATA-TAAAATAATATTTTT
*
805486 ATTTAATTTTAATT-TTAATATTAATAT-AAA-AATAATTTT
1 ATTTAATTTTAATTATT-AT-TTAATATAAAATAATATTTTT
*
805525 ATTCAAATTTTAA-TATTATTTTAAATAATAAAATAA-ATTTTT
1 ATT-TAATTTTAATTATTA-TTT-AAT-ATAAAATAATATTTTT
805567 A
1 A
805568 GATTTCACGT
Statistics
Matches: 70, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
39 15 0.21
40 17 0.24
41 5 0.07
42 28 0.40
43 5 0.07
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (40 bp):
ATTTAATTTTAATTATTATTTAATATAAAATAATATTTTT
Found at i:805558 original size:40 final size:39
Alignment explanation
Indices: 805448--805565 Score: 98
Period size: 40 Copynumber: 2.9 Consensus size: 39
805438 AGATTAATTT
* * *
805448 AATTTTAATTATTATTTATATACTAA-AATAATATTTTTATTT
1 AATTTTAA-TATTATTT-TA-AATAATAA-AATAATTTTATTA
* *
805490 AATTTTAATTTTAATATT-AAT-ATAAAAATAATTTTATTCA
1 AATTTTAATATT-ATTTTAAATAAT-AAAATAATTTTATT-A
805530 AATTTTAATATTATTTTAAATAATAAAATAAATTTT
1 AATTTTAATATTATTTTAAATAATAAAAT-AATTTT
805566 TAGATTTCAC
Statistics
Matches: 62, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
38 1 0.02
39 17 0.27
40 21 0.34
41 12 0.19
42 11 0.18
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (39 bp):
AATTTTAATATTATTTTAAATAATAAAATAATTTTATTA
Found at i:807218 original size:2 final size:2
Alignment explanation
Indices: 807211--807238 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
807201 CTCCCACAAC
807211 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
807239 GTGGTTCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:813752 original size:2 final size:2
Alignment explanation
Indices: 813745--813769 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
813735 GCATGTGTCT
813745 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
813770 GGTTTGGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:814483 original size:1 final size:1
Alignment explanation
Indices: 814440--814464 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
814430 AGAAAGAGAC
814440 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
814465 GAGAAAACGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:821382 original size:21 final size:20
Alignment explanation
Indices: 821352--821391 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
821342 CAAATAGAAT
821352 TGGGTCGGGTTTGGATTTGGG
1 TGGGTCGGGTTTGG-TTTGGG
*
821373 TGGGTTGGGTTTGGTTTGG
1 TGGGTCGGGTTTGGTTTGG
821392 TTTCTGGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.03, C:0.03, G:0.53, T:0.42
Consensus pattern (20 bp):
TGGGTCGGGTTTGGTTTGGG
Found at i:828297 original size:19 final size:18
Alignment explanation
Indices: 828275--828316 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
828265 AATTTTAGTA
*
828275 TTTTATTTAAATTTTTTAT
1 TTTTA-TTAAATTTTTAAT
*
828294 TTTTATTATATTTTTAAT
1 TTTTATTAAATTTTTAAT
828312 TTTTA
1 TTTTA
828317 ATTTGTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATTAAATTTTTAAT
Found at i:828305 original size:24 final size:25
Alignment explanation
Indices: 828263--828320 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
828253 AAAAAAACCC
*
828263 TTAATTTTAGTATTTTA-TTTAAATTT
1 TTAATTTT--TATTATATTTTAAATTT
* *
828289 TTTATTTTTATTATATTTTTAATTT
1 TTAATTTTTATTATATTTTAAATTT
828314 TTAATTT
1 TTAATTT
828321 GTAATTAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 6 0.22
25 14 0.52
26 7 0.26
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.71
Consensus pattern (25 bp):
TTAATTTTTATTATATTTTAAATTT
Found at i:828687 original size:16 final size:16
Alignment explanation
Indices: 828668--828700 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
828658 ATTTGGTTCA
828668 ATTTATTTTTGAATTC
1 ATTTATTTTTGAATTC
*
828684 ATTTATTTTTTAATTC
1 ATTTATTTTTGAATTC
828700 A
1 A
828701 ATATAAAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (16 bp):
ATTTATTTTTGAATTC
Found at i:829079 original size:42 final size:43
Alignment explanation
Indices: 829033--829119 Score: 99
Period size: 42 Copynumber: 2.0 Consensus size: 43
829023 TTAATAAATA
* *
829033 ATTAA-AAATTAAAAAATTAT-ATT-TTTATCAAATAATTATTTT
1 ATTAATAAA-TAAAAAATGATAATTATATATCAAATAA-TATTTT
* *
829075 ATTAATAAATAAATAATGATAATTATATATTAAATAATATTTT
1 ATTAATAAATAAAAAATGATAATTATATATCAAATAATATTTT
829118 AT
1 AT
829120 ATTTTTTGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
42 14 0.37
43 14 0.37
44 10 0.26
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (43 bp):
ATTAATAAATAAAAAATGATAATTATATATCAAATAATATTTT
Found at i:830068 original size:19 final size:19
Alignment explanation
Indices: 830046--830083 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
830036 AAATTTATCT
830046 TTTATGAAAAATTTTAAAA
1 TTTATGAAAAATTTTAAAA
* *
830065 TTTATTAAAATTTTTAAAA
1 TTTATGAAAAATTTTAAAA
830084 AGATAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTATGAAAAATTTTAAAA
Found at i:830995 original size:20 final size:20
Alignment explanation
Indices: 830970--831023 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
830960 GTTAGAAGCA
830970 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
*
830990 ATGTATCAATACAATGTGCC
1 ATGTATCGATACAATGTGCC
831010 ATGTATCGATACAA
1 ATGTATCGATACAA
831024 ACAGTGATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 28 0.93
21 1 0.03
22 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:831091 original size:13 final size:13
Alignment explanation
Indices: 831073--831097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
831063 ACAATGAACA
831073 TGTATCGATACAT
1 TGTATCGATACAT
831086 TGTATCGATACA
1 TGTATCGATACA
831098 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:833377 original size:13 final size:13
Alignment explanation
Indices: 833359--833383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
833349 AACTGGTTTT
833359 TGACAGATTTGAA
1 TGACAGATTTGAA
833372 TGACAGATTTGA
1 TGACAGATTTGA
833384 TGATTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (13 bp):
TGACAGATTTGAA
Found at i:833445 original size:22 final size:21
Alignment explanation
Indices: 833410--833459 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
833400 TTTGTTGATG
*
833410 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
833430 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
833451 AATTTGAAG
1 ATTTTGAAG
833460 AAGATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:833456 original size:21 final size:22
Alignment explanation
Indices: 833417--833459 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
833407 ATGATTTTGA
* *
833417 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
833439 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
833460 AAGATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:833659 original size:18 final size:20
Alignment explanation
Indices: 833618--833670 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
833608 TTATAGATCC
833618 TAATTCACATCAAACAAGCA
1 TAATTCACATCAAACAAGCA
833638 TAATTCA-AT-AACACAA-CA
1 TAATTCACATCAA-ACAAGCA
*
833656 TAATTAAACATCAAA
1 TAATT-CACATCAAA
833671 TTCATCCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 9 0.32
19 7 0.25
20 10 0.36
21 2 0.07
ACGTcount: A:0.55, C:0.21, G:0.02, T:0.23
Consensus pattern (20 bp):
TAATTCACATCAAACAAGCA
Found at i:839740 original size:33 final size:32
Alignment explanation
Indices: 839678--839742 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
839668 CAATTGTCCA
*
839678 TGTATCAATACAATGAACATGTATCGATACAT
1 TGTATCAATACAAAGAACATGTATCGATACAT
*
839710 TGTATCAATACAAAGCATA-ATGTATTGATACAT
1 TGTATCAATACAAAG-A-ACATGTATCGATACAT
839743 CTGGGTGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 14 0.48
33 14 0.48
34 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (32 bp):
TGTATCAATACAAAGAACATGTATCGATACAT
Found at i:843189 original size:13 final size:13
Alignment explanation
Indices: 843171--843196 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
843161 TACAGCAAGT
843171 ATGTATCGATACA
1 ATGTATCGATACA
843184 ATGTATCGATACA
1 ATGTATCGATACA
843197 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:844114 original size:23 final size:24
Alignment explanation
Indices: 844061--844114 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
844051 GTTTATATAT
*
844061 TTATTTATAAATTAAATATAAAGAA
1 TTATTT-TAAATTAAATATAAAAAA
844086 TT-TTTTAAA-TAAATA-AGAAAAA
1 TTATTTTAAATTAAATATA-AAAAA
844108 TTATTTT
1 TTATTTT
844115 TGATTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.04
22 12 0.46
23 8 0.31
24 3 0.12
25 2 0.08
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (24 bp):
TTATTTTAAATTAAATATAAAAAA
Found at i:844141 original size:31 final size:31
Alignment explanation
Indices: 844105--844170 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
844095 TAAATAAGAA
844105 AAATTATTTTTGATTTATTTTAATTTCATTT
1 AAATTATTTTTGATTTATTTTAATTTCATTT
844136 AAATTATTTTTGATTTATTTTAATTTCATTT
1 AAATTATTTTTGATTTATTTTAATTTCATTT
844167 AAAT
1 AAAT
844171 AATTATTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (31 bp):
AAATTATTTTTGATTTATTTTAATTTCATTT
Found at i:846550 original size:15 final size:15
Alignment explanation
Indices: 846525--846568 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
846515 CAATTTAGTT
*
846525 AAAATTAAAATTAAA
1 AAAAATAAAATTAAA
* *
846540 TATAATAAAATTAAA
1 AAAAATAAAATTAAA
*
846555 AAAAAGAAAATTAA
1 AAAAATAAAATTAA
846569 TTTGCCATGG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (15 bp):
AAAAATAAAATTAAA
Found at i:849343 original size:11 final size:11
Alignment explanation
Indices: 849327--849351 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
849317 GGGAAACTAG
849327 ATGTTCTAAAA
1 ATGTTCTAAAA
849338 ATGTTCTAAAA
1 ATGTTCTAAAA
849349 ATG
1 ATG
849352 AAGATGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (11 bp):
ATGTTCTAAAA
Found at i:851781 original size:24 final size:24
Alignment explanation
Indices: 851754--851802 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
851744 TTTGAAGTCC
* *
851754 AATAATATCTCAATGTGAAAAACA
1 AATAATATCCCAAAGTGAAAAACA
*
851778 AATAATATCCCAAAGTGAACAACA
1 AATAATATCCCAAAGTGAAAAACA
851802 A
1 A
851803 GTCCAATGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.55, C:0.16, G:0.08, T:0.20
Consensus pattern (24 bp):
AATAATATCCCAAAGTGAAAAACA
Found at i:855008 original size:22 final size:23
Alignment explanation
Indices: 854963--855010 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
854953 AAGATAAGTT
854963 TAAAATGCTTTTTAAGTAATAAA
1 TAAAATGCTTTTTAAGTAATAAA
854986 TAAAATG-TTTTTCAAGTAA-AAA
1 TAAAATGCTTTTT-AAGTAATAAA
855008 TAA
1 TAA
855011 TTTAAAGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (23 bp):
TAAAATGCTTTTTAAGTAATAAA
Found at i:865376 original size:15 final size:16
Alignment explanation
Indices: 865358--865392 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
865348 GAAAAAGAGC
*
865358 AAAAGCAAAAAAA-AA
1 AAAACCAAAAAAACAA
865373 AAAACCAAAAAAACAA
1 AAAACCAAAAAAACAA
865389 AAAA
1 AAAA
865393 AAAAGGGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (16 bp):
AAAACCAAAAAAACAA
Found at i:865383 original size:22 final size:22
Alignment explanation
Indices: 865338--865396 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
865328 AAAACAAGAG
* *
865338 AAACAAAAAAGAAAAAGAGC-AA
1 AAACAAAAAA-AAAAAAACCAAA
*
865360 AAGCAAAAAAAAAAAAACCAAAA
1 AAACAAAAAAAAAAAAACC-AAA
865383 AAACAAAAAAAAAA
1 AAACAAAAAAAAAA
865397 GGGAATGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 7 0.23
22 9 0.29
23 15 0.48
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (22 bp):
AAACAAAAAAAAAAAAACCAAA
Found at i:866499 original size:30 final size:30
Alignment explanation
Indices: 866430--866509 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 30
866420 AAGCAAACAT
* * *
866430 TTTTCAAAGT-CACGACTCAGTGGCATCTT
1 TTTTCAAAGTCCACGACTCAATGACATCTC
*
866459 TATCTTCAAAGTCCACGACTTAATGACATCTC
1 T-T-TTCAAAGTCCACGACTCAATGACATCTC
866491 TTTTCAAAGTCCACGACTC
1 TTTTCAAAGTCCACGACTC
866510 CGTAGCACCC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 1 0.02
30 17 0.40
31 9 0.21
32 16 0.37
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.33
Consensus pattern (30 bp):
TTTTCAAAGTCCACGACTCAATGACATCTC
Found at i:866662 original size:62 final size:62
Alignment explanation
Indices: 866528--867285 Score: 869
Period size: 62 Copynumber: 12.4 Consensus size: 62
866518 CCTTTTTAAT
* * * * *
866528 CTTTTAGTCCTCAAAGAACAGGACG-CTTTTTC-TTTTAAAGCCCATACGAGTAGGTGACAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * *
866588 CTTTTAGTCCTCAAAGAGCAGGATGCCTTCTTCTTTTTAAAGCTCACACTAGTTGGTGGCA-
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* ** *
866649 CTATTTAGTCCTCAAAGAGCAGGACGTTTTTTTCTTTTTAAAGACCACACGAGTTGGTGGCAC
1 CT-TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * *
866712 CCTTTAGTCCTCAAAAAGCAAGATGCC---TT-TTTTTAAAGCCCACACGAGTTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* ** * ** * * *
866770 CTTTTAGTCCTCAAAAAAAAGGAAGTTTTTTTCTCTTTTTAAAGCCCACATGAGTTGGTGGTAT
1 CTTTTAGTCCTCAAAGAGCAGGATG-CCTTTT-TCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* *
866834 CTTTTAGTCCTCAAAGAGTAGGATGCC-TTTT-TTTTTAAAGCCCACACTAGTTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* ** * * * *
866894 CTTTTAGTCCTCAAAGAGTAGGATATCTTTTTC-TTTTAAAGGCCACATGAGTTTGTGGTAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* ** * * * *
866955 CTTTTAGTCCTCAAAGAGTAGGACACCTATTTTCTTTTTAAAGGCCATACCAGTTAGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCT-TTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * * * *
867018 CTTTTAGTCCTTAAA-AGCAGGACGCTTTTTTCTTTTTAAAGCCTATACGAGTTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
867079 CTTTTAATCCTCAAAAAAGTAGGATGCCTTTTT-TTTTTAAAGCCCACGCAAGTTGGTGGCAA
1 CTTTTAGTCCTC-AAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
**
867141 C-TTTAGTCCTCAAAGAGCAGGACACCTTTTTC-TTTTAAAGCCCACACGAGTTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
*
867201 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCTCACACGAGTTGGTGGCAC
1 CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
* *
867263 CTTTTAGTCTTCAAAGAGTAGGA
1 CTTTTAGTCCTCAAAGAGCAGGA
867286 AGTATTTCCT
Statistics
Matches: 592, Mismatches: 87, Indels: 36
0.83 0.12 0.05
Matches are distributed among these distances:
58 48 0.08
59 2 0.00
60 115 0.19
61 140 0.24
62 188 0.32
63 52 0.09
64 47 0.08
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (62 bp):
CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
Found at i:867369 original size:42 final size:42
Alignment explanation
Indices: 867305--867490 Score: 189
Period size: 42 Copynumber: 4.5 Consensus size: 42
867295 TTCTTTTCCT
* *
867305 TTTGTCTTCAAAGAGTAGGACGCACTTTATTTCCTTTTCTAC
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTCCTTTTCTAC
* * *
867347 TTTGTCCTCAAAGAGCACGACGCATTTTATTTCCTTTTCTCAT
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTCCTTTTCT-AC
* ** *
867390 TTTGTCCTCAAAGAACAGGACGCA-TTTCCTT-CTTTTC-CC
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTCCTTTTCTAC
* * * * * *
867429 TTTGTCCTCAAAGAGCAAGACGTACTTCATTTTCTTTTTTCC
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTCCTTTTCTAC
* *
867471 TTTATCCTCAAAGAGTAGGA
1 TTTGTCCTCAAAGAGCAGGA
867491 TGTATTTTAT
Statistics
Matches: 119, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
39 21 0.18
40 4 0.03
41 11 0.09
42 60 0.50
43 23 0.19
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (42 bp):
TTTGTCCTCAAAGAGCAGGACGCACTTTATTTCCTTTTCTAC
Found at i:867412 original size:43 final size:43
Alignment explanation
Indices: 867288--867501 Score: 179
Period size: 42 Copynumber: 5.1 Consensus size: 43
867278 GAGTAGGAAG
* * * * *
867288 TATTTCCTTCTTTTCCTTTTGTCTTCAAAGAGTAGGACGCACTT
1 TATTTCCTT-TTCTCATTTTGTCCTCAAAGAGCAGGACGCATTT
* *
867332 TATTTCCTTTTCT-ACTTTGTCCTCAAAGAGCACGACGCATTT
1 TATTTCCTTTTCTCATTTTGTCCTCAAAGAGCAGGACGCATTT
*
867374 TATTTCCTTTTCTCATTTTGTCCTCAAAGAACAGGACGCA-TT
1 TATTTCCTTTTCTCATTTTGTCCTCAAAGAGCAGGACGCATTT
** * * * *
867416 TCCTT-CTTTTC-C-CTTTGTCCTCAAAGAGCAAGACGTACTT
1 TATTTCCTTTTCTCATTTTGTCCTCAAAGAGCAGGACGCATTT
* * * * * * * *
867456 CATTTTCTTTTTTC-CTTTATCCTCAAAGAGTAGGATGTATTT
1 TATTTCCTTTTCTCATTTTGTCCTCAAAGAGCAGGACGCATTT
867498 TATT
1 TATT
867502 CTCTTTTTTC
Statistics
Matches: 140, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
39 21 0.15
40 5 0.04
41 11 0.08
42 68 0.49
43 26 0.19
44 9 0.06
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.43
Consensus pattern (43 bp):
TATTTCCTTTTCTCATTTTGTCCTCAAAGAGCAGGACGCATTT
Found at i:867507 original size:42 final size:42
Alignment explanation
Indices: 867422--867538 Score: 135
Period size: 42 Copynumber: 2.8 Consensus size: 42
867412 CATTTCCTTC
* * * * *
867422 TTTTCCCTTTGTCCTCAAAGAGCAAGACGTACTTCATTTTCT
1 TTTTTCCTTTATCCTCAAAGAGTAGGACGTACTTCATTCTCT
* * *
867464 TTTTTCCTTTATCCTCAAAGAGTAGGATGTATTTTATTCTCT
1 TTTTTCCTTTATCCTCAAAGAGTAGGACGTACTTCATTCTCT
* * *
867506 TTTTTCCTTTATCCTCGAATAGTAGGACATACT
1 TTTTTCCTTTATCCTCAAAGAGTAGGACGTACT
867539 CCTTTTCCCT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.44
Consensus pattern (42 bp):
TTTTTCCTTTATCCTCAAAGAGTAGGACGTACTTCATTCTCT
Found at i:867631 original size:43 final size:40
Alignment explanation
Indices: 867537--867775 Score: 139
Period size: 43 Copynumber: 5.8 Consensus size: 40
867527 GTAGGACATA
* * * * *
867537 CTCCTTTTCCCTTTGTCCTCAAGGAGTATGACACTTTCCTTTT
1 CTCCTTTTTCCTTTGTCCTCAA-GAGCAAGACCCTTT-C-ATT
* *
867580 TTTCTTTTTCCTTTGTCCTCAGAGAGCAAGACCCATTTCATT
1 CTCCTTTTTCCTTTGTCCTCA-AGAGCAAGACCC-TTTCATT
* *
867622 CTCCTTTTTTCCTTTGTCCCCGAAGAGCAAGA--C-GT-A--
1 CTCC-TTTTTCCTTTGTCCTC-AAGAGCAAGACCCTTTCATT
* * * * * *
867658 CTCCTTTTCCCTTTCTCCTCAAGGAGTAGGACGCTTTCCTTT
1 CTCCTTTTTCCTTTGTCCTCAA-GAGCAAGACCCTTT-CATT
* * * *
867700 TTCCTTTTTTCCTTTGTCCTCAAGGAGCACGACCTATTTTATT
1 CTCC-TTTTTCCTTTGTCCTCAA-GAGCAAGACC-CTTTCATT
*
867743 CTCCTTTTTCCTTTGTCCTCAAAGAGCAGGACC
1 CTCCTTTTTCCTTTGTCCTC-AAGAGCAAGACC
867776 TACTCATTTT
Statistics
Matches: 152, Mismatches: 29, Indels: 31
0.72 0.14 0.15
Matches are distributed among these distances:
34 2 0.01
35 19 0.12
36 4 0.03
37 1 0.01
38 2 0.01
39 1 0.01
41 1 0.01
42 32 0.21
43 82 0.54
44 8 0.05
ACGTcount: A:0.16, C:0.30, G:0.13, T:0.41
Consensus pattern (40 bp):
CTCCTTTTTCCTTTGTCCTCAAGAGCAAGACCCTTTCATT
Found at i:867764 original size:42 final size:42
Alignment explanation
Indices: 867658--867795 Score: 140
Period size: 42 Copynumber: 3.3 Consensus size: 42
867648 GCAAGACGTA
* * *
867658 CTCCTTTTCCCTTTCTCCTCAAGGAGTAGGACGCT-TTCCTTTT
1 CTCCTTTTTCCTTTGTCCTCAAGGAGCAGGAC-CTATT-CTTTT
*
867701 -TCCTTTTTTCCTTTGTCCTCAAGGAGCACGACCTATT-TTATT
1 CTCC-TTTTTCCTTTGTCCTCAAGGAGCAGGACCTATTCTT-TT
* * *
867743 CTCCTTTTTCCTTTGTCCTCAAAGAGCAGGACCTACTCATTT
1 CTCCTTTTTCCTTTGTCCTCAAGGAGCAGGACCTATTCTTTT
*
867785 -TCCTTTGTCCT
1 CTCCTTTTTCCT
867796 CAAAGAGCAG
Statistics
Matches: 81, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
41 12 0.15
42 39 0.48
43 30 0.37
ACGTcount: A:0.14, C:0.30, G:0.12, T:0.43
Consensus pattern (42 bp):
CTCCTTTTTCCTTTGTCCTCAAGGAGCAGGACCTATTCTTTT
Found at i:867819 original size:121 final size:122
Alignment explanation
Indices: 867297--867823 Score: 445
Period size: 121 Copynumber: 4.4 Consensus size: 122
867287 GTATTTCCTT
* * * * * * *
867297 CTTTTCCTTTTGTCTTCAAAGAGTAGGACGCA-CTT--TATTTCCTTTTCTACTTTGTCCTCAAA
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGATGCACCTTCCTTTTTCCTTTTTTCCTTTGTCCTCAAA
* * * *
867359 GAGCACGACGC-ATTTTATT-TCCTTTTCTCATTTTGTCCTCAAAGAACAGGACGCATTTCCTT
66 GAGCACGAC-CTATTTTATTCTCCTTTT-TC-CTTTGTCCTCAAAGAGCAGGAC-C---TACTC
* * * * *
867421 CTTTTCCCTTTGTCCTCAAAGAGCAAGACGTA-CTT-CATTTT-CTTTTTTCCTTTATCCTCAAA
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGATGCACCTTCCTTTTTCCTTTTTTCCTTTGTCCTCAAA
* * ** * * * * * *
867483 GAGTAGGATGTATTTTATTCTCTTTTTTCCTTTATCCTCGAATAGTAGGACATACTC
66 GAGCACGACCTATTTTATTCTCCTTTTTCCTTTGTCCTCAAAGAGCAGGACCTACTC
* * *
867540 CTTTTCCCTTTGTCCTC-AAG-G-AGTATGACACTTTCCTTTTT-TTCTTTTTCCTTTGTCCTCA
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGATG-CACCTTCCTTTTTCCT-TTTTTCCTTTGTCCTCA
* * * * * * * *
867601 GAGAGCAAGACCCATTTCATTCTCCTTTTTTCCTTTGTCCCCGAAGAGCAAGACGTACTC
64 AAGAGCACGACCTATTTTATTCTCC-TTTTTCCTTTGTCCTCAAAGAGCAGGACCTACTC
* * * * * *
867661 CTTTTCCCTTTCTCCTCAAGGAGTAGGA--CGCTTTCCTTTTTCCTTTTTTCCTTTGTCCTCAAG
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGATGCACCTTCCTTTTTCCTTTTTTCCTTTGTCCTCAAA
867724 GAGCACGACCTATTTTATTCTCCTTTTTCCTTTGTCCTCAAAGAGCAGGACCTACTC
66 GAGCACGACCTATTTTATTCTCCTTTTTCCTTTGTCCTCAAAGAGCAGGACCTACTC
* * *
867781 ATTTT-CCTTTGTCCTCAAAGAGCAGGATGCCCCATCCTTTTTC
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGATGCACCTTCCTTTTTC
867824 TTCCCTTCTA
Statistics
Matches: 322, Mismatches: 67, Indels: 31
0.77 0.16 0.07
Matches are distributed among these distances:
116 3 0.01
117 2 0.01
118 5 0.02
119 45 0.14
120 67 0.21
121 104 0.32
122 3 0.01
123 17 0.05
124 67 0.21
125 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.41
Consensus pattern (122 bp):
CTTTTCCCTTTGTCCTCAAAGAGCAGGATGCACCTTCCTTTTTCCTTTTTTCCTTTGTCCTCAAA
GAGCACGACCTATTTTATTCTCCTTTTTCCTTTGTCCTCAAAGAGCAGGACCTACTC
Found at i:870982 original size:78 final size:76
Alignment explanation
Indices: 870852--871298 Score: 339
Period size: 78 Copynumber: 5.8 Consensus size: 76
870842 AAATTTCTAA
* *
870852 ATTTTTATTTCAGAAATATTAAATTTTTCATCATGGGGATACTCTAACCCCATTATTTCCGAGGG
1 ATTTTTATTTCA-AAATATTAAA-TTTTCATCTTGGGGATACTCCAACCCCATTATTTCCGAGGG
870917 GATACTCAACCCT
64 GATACTCAACCCT
* * * * *
870930 GTTTTTATTTCTAAAATATTAAATTTATCAGCTTGGGGATACTCCAACCCCATTAATTCTGAAGG
1 ATTTTTATTTC-AAAATATTAAATTT-TCATCTTGGGGATACTCCAACCCCATTATTTCCGAGGG
*
870995 GATACTCCAACCCC
64 GATACT-CAACCCT
** * * * * * *
871009 ATTTTTAGTTTCAAAATGCTAAATTTTTCATC-TCGGGATACTCTAACTCTATCAATTCCGAGGG
1 ATTTTTA-TTTCAAAATATTAAA-TTTTCATCTTGGGGATACTCCAACCCCATTATTTCCGAGGG
* *
871073 GATATTCAAACCCC
64 GATACTC-AACCCT
* * ** * *
871087 GTTTTTATTTCCAAAATATTAAATTTT--TCTTGAAGG-TACTCCAACCCTGTTATTTTCGAGAG
1 ATTTTTATTT-CAAAATATTAAATTTTCATCTTG-GGGATACTCCAACCCCATTATTTCCGAGGG
* * *
871149 AATACTCTAGCCAT
64 GATACTC-AACCCT
* * ** * ***
871163 ATTTTTATTTCCAAAAATATCAAATTTTCATCTCGAAGATACTCCAACCCCGTTATTTTTAAGGG
1 ATTTTTATTT-C-AAAATATTAAATTTTCATCTTGGGGATACTCCAACCCCATTATTTCCGAGGG
*
871228 GATACTCCGA-CCT
64 GATACT-CAACCCT
* * * * *
871241 ATTTTAATTTAAAAAATGTTAAAATTTTCATCTCGGGGATACTCTAACCCCA-TATTTC
1 ATTTTTATTT-CAAAATATT-AAATTTTCATCTTGGGGATACTCCAACCCCATTATTTC
871299 AAGAGGACAC
Statistics
Matches: 294, Mismatches: 60, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
75 2 0.01
76 39 0.13
77 38 0.13
78 150 0.51
79 57 0.19
80 8 0.03
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (76 bp):
ATTTTTATTTCAAAATATTAAATTTTCATCTTGGGGATACTCCAACCCCATTATTTCCGAGGGGA
TACTCAACCCT
Found at i:874060 original size:16 final size:15
Alignment explanation
Indices: 874039--874074 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
874029 AAATATTTAT
874039 TTATTATTTTATCTTA
1 TTATTATTTT-TCTTA
*
874055 TTATTATTTTTTTTA
1 TTATTATTTTTCTTA
874070 TTATT
1 TTATT
874075 GAAAATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (15 bp):
TTATTATTTTTCTTA
Found at i:881161 original size:13 final size:13
Alignment explanation
Indices: 881143--881167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
881133 CAAAGATCAG
881143 TGTATCGATACAA
1 TGTATCGATACAA
881156 TGTATCGATACA
1 TGTATCGATACA
881168 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:881248 original size:19 final size:18
Alignment explanation
Indices: 881220--881282 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 18
881210 AGCGATACAT
*
881220 TGTATTGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
881239 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
881252 TGTATCAATACAACACTTA
1 TGTATCGATACAA-ACTTA
881271 TGTATCGATACA
1 TGTATCGATACA
881283 TTGTATCGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
13 10 0.29
14 1 0.03
16 2 0.06
18 1 0.03
19 21 0.60
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:881253 original size:32 final size:32
Alignment explanation
Indices: 881212--881297 Score: 145
Period size: 32 Copynumber: 2.7 Consensus size: 32
881202 AGCTTCGTAG
*
881212 CGATACATTGTATTGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* *
881244 CGATACATTGTATCAATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
881276 CGATACATTGTATCGATACAAA
1 CGATACATTGTATCGATACAAA
881298 TCATTGAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:881257 original size:13 final size:13
Alignment explanation
Indices: 881239--881295 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
881229 ACAAAACTTA
881239 TGTATCGATACAT
1 TGTATCGATACAT
*
881252 TGTATCAATACAACACTT
1 TGTATCGAT---ACA--T
881270 ATGTATCGATACAT
1 -TGTATCGATACAT
881284 TGTATCGATACA
1 TGTATCGATACA
881296 AATCATTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 20 0.56
14 1 0.03
16 6 0.17
18 1 0.03
19 8 0.22
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:882102 original size:49 final size:49
Alignment explanation
Indices: 881939--882197 Score: 243
Period size: 49 Copynumber: 5.2 Consensus size: 49
881929 TCGAAGATGA
*
881939 GAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGAT
1 GAAG-ATGCCAATGTGCTGATTCAAGGCCAACGACATT-GGTCTTAAAGAT
** * * * * * * *
881990 GACGAAGGCGCCAATATGTTGATTCAAGGCCAGCAATACTGATCTTTAAAGAT
1 ---GAAGATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTC-TTAAAGAT
* * **
882043 GAAGGTGCCAATGTGCTGATTCCAGGCCAACGACATTGAACTTAAAGAT
1 GAAGATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAT
*
882092 GAAGATGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGAT
1 GAAGATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAT
* * * * * * * *
882141 AAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT--AGAA
1 GAAGATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAT
882188 GAAGATGCCA
1 GAAGATGCCA
882198 CCAACTTGTG
Statistics
Matches: 169, Mismatches: 35, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
47 11 0.07
49 87 0.51
50 32 0.19
52 2 0.01
53 33 0.20
54 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (49 bp):
GAAGATGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAT
Found at i:882168 original size:98 final size:99
Alignment explanation
Indices: 881945--882197 Score: 269
Period size: 98 Copynumber: 2.5 Consensus size: 99
881935 ATGAGAAGAA
** ** *
881945 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGCGCCAATATGTT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATT-GGACTTAAAGAT---GAAGATGCCAATATGCT
* * *
882010 GATTCAAGGCCAGCAATACTGATCTTTAAAGATGAAGG
62 GATTCAAGGCCAACAACACTGATCTTTAAAGATAAAGG
* * *
882048 TGCCAATGTGCTGATTCCAGGCCAACGACATTGAACTTAAAGATGAAGATGCCAATGTGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
* * * *
882113 TAAGGCCAACGACATTGGTC-TTAAAGATAAAGG
66 CAAGGCCAACAACACTGATCTTTAAAGATAAAGG
* * * * *
882146 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT--AGAAGAAGATGCCA
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGATGCCA
882198 CCAACTTGTG
Statistics
Matches: 128, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
96 13 0.10
98 44 0.34
99 31 0.24
102 9 0.07
103 31 0.24
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (99 bp):
TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
CAAGGCCAACAACACTGATCTTTAAAGATAAAGG
Found at i:882287 original size:34 final size:34
Alignment explanation
Indices: 882243--882356 Score: 135
Period size: 34 Copynumber: 3.4 Consensus size: 34
882233 TGGGCTTTTG
*
882243 AAAAGGGTGCCACTGACTTGTGGGCTTAAAAAGA
1 AAAAGAGTGCCACTGACTTGTGGGCTTAAAAAGA
*
882277 AAAAGAGTGCCA-TGGAGTTGTGGGCTTACAAAAGA
1 AAAAGAGTGCCACT-GACTTGTGGGCTTA-AAAAGA
* * *
882312 AAAGGAGTGCCACGGACTTGTGGACTTAAAAA-A
1 AAAAGAGTGCCACTGACTTGTGGGCTTAAAAAGA
882345 GAAAAG-GTGCCA
1 -AAAAGAGTGCCA
882357 ATATGCTGAC
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
33 8 0.12
34 32 0.46
35 29 0.42
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.18
Consensus pattern (34 bp):
AAAAGAGTGCCACTGACTTGTGGGCTTAAAAAGA
Found at i:882320 original size:35 final size:34
Alignment explanation
Indices: 882242--882351 Score: 143
Period size: 35 Copynumber: 3.2 Consensus size: 34
882232 GTGGGCTTTT
882242 GAAAAGG-GTGCCACT-GACTTGTGGGCTTAAAAA
1 GAAAAGGAGTGCCA-TGGACTTGTGGGCTTAAAAA
* *
882275 GAAAAAGAGTGCCATGGAGTTGTGGGCTTACAAAA
1 GAAAAGGAGTGCCATGGACTTGTGGGCTTA-AAAA
* *
882310 GAAAAGGAGTGCCACGGACTTGTGGACTTAAAAAA
1 GAAAAGGAGTGCCATGGACTTGTGGGCTT-AAAAA
882345 GAAAAGG
1 GAAAAGG
882352 TGCCAATATG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.10
34 19 0.28
35 40 0.60
36 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.31, T:0.18
Consensus pattern (34 bp):
GAAAAGGAGTGCCATGGACTTGTGGGCTTAAAAA
Found at i:882464 original size:33 final size:32
Alignment explanation
Indices: 882390--882479 Score: 126
Period size: 32 Copynumber: 2.8 Consensus size: 32
882380 TATTGCGCTT
* * *
882390 AAAGGTGCCACAGAGTTGTGGACTTAAAAAGA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAAAA
882422 AAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAA-AAA
* *
882455 AAAGATGCCACGGACTTGTGGGCTT
1 AAAGGTGCCACGGAGTTGTGGGCTT
882480 TTGAAGGTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
32 27 0.52
33 25 0.48
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.20
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGGCTTAAAAAAA
Found at i:882523 original size:58 final size:58
Alignment explanation
Indices: 882451--882713 Score: 406
Period size: 57 Copynumber: 4.6 Consensus size: 58
882441 GGGCTTAAAA
* * * *
882451 GAAAAAAGATGCCACGGACTTGTGGGCTTTTGAAGGTTGACACTGATTTGTGGGCTTT
1 GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTT
882509 GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTT
1 GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTT
* *
882567 GGAAAAGGGTGCCACTGATTTGTGGGC-TTTGAAGGTTGCCACTGATTTGTGGGCTTT
1 GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTT
* * * *
882624 GGAAAATGGTGCCACTGATTTGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGGCTTT
1 GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTT
*
882681 GAAAAA-GATGCCACTGACTTGTGGGCTTTTGAA
1 GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAA
882714 AAGGGTGAGG
Statistics
Matches: 193, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
56 18 0.09
57 96 0.50
58 79 0.41
ACGTcount: A:0.21, C:0.15, G:0.32, T:0.32
Consensus pattern (58 bp):
GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTT
Found at i:882532 original size:30 final size:29
Alignment explanation
Indices: 882460--882720 Score: 295
Period size: 30 Copynumber: 9.1 Consensus size: 29
882450 AGAAAAAAGA
* * *
882460 TGCCACGGACTTGTGGGCTTTTG--AAGGT
1 TGCCACTGATTTGTGGGC-TTTGAAAAGGG
*
882488 TGACACTGATTTGTGGGCTTTGAAAAAGGG
1 TGCCACTGATTTGTGGGCTTTG-AAAAGGG
* *
882518 TGCCACTGACTTGTGGGCTTTTG--AAGGT
1 TGCCACTGATTTGTGGGC-TTTGAAAAGGG
882546 TGCCACTGATTTGTGGGCTTTGGAAAAGGG
1 TGCCACTGATTTGTGGGCTTT-GAAAAGGG
*
882576 TGCCACTGATTTGTGGGCTTTG--AAGGT
1 TGCCACTGATTTGTGGGCTTTGAAAAGGG
*
882603 TGCCACTGATTTGTGGGCTTTGGAAAATGG
1 TGCCACTGATTTGTGGGCTTT-GAAAAGGG
*
882633 TGCCACTGATTTGTGGGCTTTG--AAGGT
1 TGCCACTGATTTGTGGGCTTTGAAAAGGG
* * *
882660 TGCCACTGACTTGTGGGCTTTGAAAAAGA
1 TGCCACTGATTTGTGGGCTTTGAAAAGGG
*
882689 TGCCACTGACTTGTGGGCTTTTGAAAAGGG
1 TGCCACTGATTTGTGGGC-TTTGAAAAGGG
882719 TG
1 TG
882721 AGGAATGTCT
Statistics
Matches: 201, Mismatches: 19, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
27 56 0.28
28 38 0.19
29 23 0.11
30 80 0.40
31 4 0.02
ACGTcount: A:0.19, C:0.15, G:0.33, T:0.33
Consensus pattern (29 bp):
TGCCACTGATTTGTGGGCTTTGAAAAGGG
Found at i:884169 original size:38 final size:37
Alignment explanation
Indices: 884127--884224 Score: 137
Period size: 35 Copynumber: 2.7 Consensus size: 37
884117 TTTGTTGTTG
* *
884127 TTTTTTTTTTGTTTGTTTGTTTATTTGTTTTTTTCTTC
1 TTTTTTTTTTGTTTGTTTGTTT-TTTGTCTTCTTCTTC
884165 TTTTTTTTTTGTTTGTTTG-TTTTT-TCTTCTTCTTC
1 TTTTTTTTTTGTTTGTTTGTTTTTTGTCTTCTTCTTC
* *
884200 TTTTTTGTTTGTTTGTTTTTTTTTT
1 TTTTTTTTTTGTTTGTTTGTTTTTT
884225 TGTGGAGGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
35 26 0.47
36 8 0.15
37 2 0.04
38 19 0.35
ACGTcount: A:0.01, C:0.06, G:0.10, T:0.83
Consensus pattern (37 bp):
TTTTTTTTTTGTTTGTTTGTTTTTTGTCTTCTTCTTC
Found at i:884204 original size:31 final size:29
Alignment explanation
Indices: 884115--884220 Score: 130
Period size: 31 Copynumber: 3.7 Consensus size: 29
884105 ATCCGAACCC
*
884115 TTTTTG-TTG-TTGTTTTTT-TT-TTGTT
1 TTTTTGTTTGTTTGTTTTTTCTTCTTTTT
* *
884140 TGTTTGTTTATTTGTTTTTTTCTTCTTTTT
1 TTTTTGTTTGTTTG-TTTTTTCTTCTTTTT
884170 TTTTTGTTTGTTTGTTTTTTCTTCTTCTTCT
1 TTTTTGTTTGTTTGTTTTTTCTTCTT-TT-T
884201 TTTTTGTTTGTTTGTTTTTT
1 TTTTTGTTTGTTTGTTTTTT
884221 TTTTTGTGGA
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
25 5 0.07
26 2 0.03
27 3 0.04
28 6 0.09
29 14 0.20
30 18 0.26
31 21 0.30
ACGTcount: A:0.01, C:0.06, G:0.12, T:0.81
Consensus pattern (29 bp):
TTTTTGTTTGTTTGTTTTTTCTTCTTTTT
Found at i:893722 original size:80 final size:79
Alignment explanation
Indices: 893621--893823 Score: 235
Period size: 79 Copynumber: 2.6 Consensus size: 79
893611 AATAATGGGG
* * * * * ** *
893621 TTGGAGTATCCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATTGATGATTAGA
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTACA
*
893686 AAAAGAAAATCGGGA
65 AAAAGAAAACCGGGA
* * *
893701 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTCAG
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTACAA
* * * *
893766 GAATAAAGCCGGGG
66 AAAGAAAACCGGGA
**
893780 TTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGAT
893824 GAAATAACGA
Statistics
Matches: 104, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
79 54 0.52
80 50 0.48
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTACAA
AAAGAAAACCGGGA
Found at i:893831 original size:28 final size:28
Alignment explanation
Indices: 893775--893851 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
893765 GGAATAAAGC
*** **
893775 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
893803 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
893831 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
893852 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:893838 original size:107 final size:108
Alignment explanation
Indices: 893696--893928 Score: 272
Period size: 107 Copynumber: 2.2 Consensus size: 108
893686 AAAAGAAAAT
* ** * *
893696 CGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-A
1 CGGGGTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATGA
** * **
893760 TTTCAGGAAT-AAAGCCGGGGTTGGAGTATCCCCTCGGAGGTAA
66 TTTCAAAAATGAAA-CCGGGGTTGGAGTATCCCCTCGAAAATAA
* * * * ** *
893803 CGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATGA
*
893868 TTTTAAAAATGAAACCGGGGTTGGAGTATCCCCTCGAAAATAA
66 TTTCAAAAATGAAACCGGGGTTGGAGTATCCCCTCGAAAATAA
*
893911 CGGGGTTGAAGTATCCCC
1 CGGGGTTGGAGTATCCCC
893929 AATTATGAGA
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
107 52 0.50
108 50 0.48
109 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (108 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATGA
TTTCAAAAATGAAACCGGGGTTGGAGTATCCCCTCGAAAATAA
Found at i:893932 original size:187 final size:187
Alignment explanation
Indices: 893611--894008 Score: 559
Period size: 187 Copynumber: 2.1 Consensus size: 187
893601 TTTTGGAGAT
* * * * *
893611 AATAATGGGGTTGGAGTATCCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATT
1 AATAACGGGGTTGGAGTATCCCCATGAAAATAACGAGGCTGGAGTATCCCCGATTGTGAAAAATT
* * *
893676 GATGATTAGAAAAAGAAAATCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCC
66 GATGATTAGAAAAAGAAAACCGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATCCC
** *
893741 CAATTATGAGAAATCAATATTTCAGG-AATAAAGCCGGGGTTGGAGTATCCCCTCGGA
131 CAATTATGAGAAATCAATATTT-AGGAAATAAAGCAAGGGTTGGAGTATCCCCTCGAA
** * *
893798 GGTAACGGGGTTGGAGTATCCCCGATG-AAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAAT
1 AATAACGGGGTTGGAGTATCCCC-ATGAAAATAACGAGGCTGGAGTATCCCCGATTGTGAAAAAT
* ** *
893862 TGATGTTTTTAAAAATG-AAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATC
65 TGATGATTAGAAAAA-GAAAACCGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATC
* *
893926 CCCAATTATGAGAAATTAATATTTTGGAAATAAAGCAAGGGTTGGAGTATCCCCTCGAA
129 CCCAATTATGAGAAATCAATATTTAGGAAATAAAGCAAGGGTTGGAGTATCCCCTCGAA
893985 AATAACGGGGTTGGAGTATCCCCA
1 AATAACGGGGTTGGAGTATCCCCA
894009 ATCATGATAA
Statistics
Matches: 185, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
186 3 0.02
187 179 0.97
188 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (187 bp):
AATAACGGGGTTGGAGTATCCCCATGAAAATAACGAGGCTGGAGTATCCCCGATTGTGAAAAATT
GATGATTAGAAAAAGAAAACCGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATCCC
CAATTATGAGAAATCAATATTTAGGAAATAAAGCAAGGGTTGGAGTATCCCCTCGAA
Found at i:893942 original size:80 final size:79
Alignment explanation
Indices: 893803--894196 Score: 463
Period size: 79 Copynumber: 5.0 Consensus size: 79
893793 TCGGAGGTAA
* * * * *
893803 CGGGGTTGGAGTAT-CCC-CGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGAT
1 CGGGGTTGGAGTATCCCCTCGA--AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAAT
*
893866 GTTTTTAAAAATGAAA-C
64 -ATTTTAAAAAT-AAAGC
* *
893883 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATCCCCAATTATGAGAAATTAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
**
893948 TTTGGAAATAAAGC
66 TTTAAAAATAAAGC
** * * *
893962 AAGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATCATGATAAATTAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
**
894027 TTTGGAAATAAAGC
66 TTTAAAAATAAAGC
* * * *
894041 CAGGGTTGGAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCGATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
*
894106 TTTAAGAATAAAGC
66 TTTAAAAATAAAGC
* * * * *
894120 AGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTAACCCCGATTAT-AGAAAATTAGTG
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAG-AAATTAATA
*
894184 TTTTGAAAATAAA
65 TTTTAAAAATAAA
894197 ATTGGAGCTG
Statistics
Matches: 274, Mismatches: 36, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
78 5 0.02
79 215 0.78
80 48 0.18
81 3 0.01
82 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
TTTAAAAATAAAGC
Found at i:904337 original size:159 final size:159
Alignment explanation
Indices: 904161--904693 Score: 492
Period size: 159 Copynumber: 3.4 Consensus size: 159
904151 AGATAATAAT
* * * *
904161 GGGGTTGGAGTATCCCCTTGAAAATAACAGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGAT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGGTTATGAGAAATCGATGAT
* *
904226 TAGAAAAAGAAAATCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTA
66 TAGAAAAACAAAATCGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTA
*
904291 TGAGAAATCAATATTTTAGGAATAAAGCC
131 TGAGAAATCAATATTTTAGGAATAAAGCA
* ** * *
904320 GGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCC-G--ATGA-AATAACGA-GG
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGGTTATGAGAA-ATCGATGA
* * ** *** * *** * **** *
904380 TTGGAGTATCCTCGATCGTGA-AAAATTAATATTTTTGAAAATAAAACTGGGGTTGGAGTATCCC
65 TTAGA-AAAACAAAATCGGGATTGGAGT-ATCCCCTCGAAAAT--AAC-GGGGTTGGAGTATCCC
* *
904444 CAATTATGAGAAATTAATATTTT-GGAAATAAAGTA
125 CAATTATGAGAAATCAATATTTTAGG-AATAAAGCA
* ** **
904479 GGGGTTGGAGTATCCCCTCTAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATTAAT-AT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGGTTATGAGAAATCGATGAT
*** * ** *
904543 TTTTAAAATAAAGCCAGGG-TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATT
66 TAGAAAAACAAAATC-GGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATT
*
904607 ATGAGAAATCAATATTTTAAGAATAAAAGCA
130 ATGAGAAATCAATATTTTAGGAAT-AAAGCA
* * *
904638 GGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTCGAGTATCCCCGATTAT-AGAAA
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGGTTATGAGAAA
904694 ATTAGTGTTT
Statistics
Matches: 288, Mismatches: 70, Indels: 33
0.74 0.18 0.08
Matches are distributed among these distances:
155 9 0.03
156 22 0.08
158 51 0.18
159 181 0.63
161 11 0.04
162 12 0.04
163 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (159 bp):
GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGGTTATGAGAAATCGATGAT
TAGAAAAACAAAATCGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTA
TGAGAAATCAATATTTTAGGAATAAAGCA
Found at i:904348 original size:79 final size:79
Alignment explanation
Indices: 904161--904693 Score: 424
Period size: 79 Copynumber: 6.7 Consensus size: 79
904151 AGATAATAAT
* * * ** * *
904161 GGGGTTGGAGTATCCCCTTGAAAATAACAGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGAT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-AT
** ** * **
904226 TAGAAAAAGAAAATC
65 TTTAGGAATAAAGCC
* *
904241 GGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATT
904306 TTAGGAATAAAGCC
66 TTAGGAATAAAGCC
* ** * * *
904320 GGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCC---GAT--GAAAT-AACGAG
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAA-TAT
* * *
904379 GTT-GGAGT--ATCC
65 TTTAGGAATAAAGCC
** * * * **** *
904391 TCGATCGTGAAAAATTAATATTTTTGAAAATAAAACTGGGGTTGGAGTATCCCCAATTATGAGAA
1 GGGGT--TG---GAGT-ATCCCCTCGAAAAT--AAC-GGGGTTGGAGTATCCCCAATTATGAGAA
* **
904456 ATTAATATTTT-GGAAATAAAGTA
57 ATCAATATTTTAGG-AATAAAGCC
* *
904479 GGGGTTGGAGTATCCCCTCTAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATTAATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATA-T
*
904544 TTTA-AAATAAAGCC
65 TTTAGGAATAAAGCC
* *
904558 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATT
* *
904623 TTAAGAATAAAAGCA
66 TTAGGAAT-AAAGCC
* * *
904638 GGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTCGAGTATCCCCGATTAT-AGAAA
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAA
904694 ATTAGTGTTT
Statistics
Matches: 361, Mismatches: 69, Indels: 47
0.76 0.14 0.10
Matches are distributed among these distances:
71 5 0.01
73 8 0.02
74 8 0.02
76 4 0.01
77 6 0.02
78 5 0.01
79 164 0.45
80 130 0.36
82 8 0.02
83 4 0.01
85 10 0.03
86 6 0.02
88 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATT
TTAGGAATAAAGCC
Found at i:904375 original size:28 final size:28
Alignment explanation
Indices: 904319--904395 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
904309 GGAATAAAGC
*** **
904319 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
904347 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
904375 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
904396 CGTGAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:904382 original size:107 final size:108
Alignment explanation
Indices: 904240--904444 Score: 268
Period size: 107 Copynumber: 1.9 Consensus size: 108
904230 AAAAGAAAAT
** * * *
904240 CGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGATTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAATCATGAAAAATCAATAT
* *
904305 TTTAG-GAATAAAGCCGGGGTTGGAGTATCCCCTCGGAGGTAA
66 TTTAGAAAATAAAACCGGGGTTGGAGTATCCCCTCGGAGGTAA
* * * * * *
904347 CGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATCGTGAAAAATTAATAT
1 CGGGATTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAATCATGAAAAATCAATAT
* *
904412 TTTTGAAAATAAAACTGGGGTTGGAGTATCCCC
66 TTTAGAAAATAAAACCGGGGTTGGAGTATCCCC
904445 AATTATGAGA
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
107 58 0.71
108 24 0.29
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (108 bp):
CGGGATTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCAATCATGAAAAATCAATAT
TTTAGAAAATAAAACCGGGGTTGGAGTATCCCCTCGGAGGTAA
Done.