Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1642
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43209
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.36
Found at i:1626 original size:2 final size:2
Alignment explanation
Indices: 1619--1654 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
1609 AGATAGGTAA
1619 AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1655 AACAAAGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4626 original size:2 final size:2
Alignment explanation
Indices: 4619--4675 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
4609 ATTATGTCTC
*
4619 AG AG AG AG AG AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4661 AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG A
4676 TGATTTCGTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6696 original size:2 final size:2
Alignment explanation
Indices: 6689--6720 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6679 AGAAATTGAA
6689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6721 GTATGAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6991 original size:2 final size:2
Alignment explanation
Indices: 6986--7015 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6976 TATATATATA
6986 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
7016 ATCTGATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:7483 original size:2 final size:2
Alignment explanation
Indices: 7426--7464 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7416 AGTACATTAC
7426 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7465 ATACTTCCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8891 original size:43 final size:43
Alignment explanation
Indices: 8839--8932 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 43
8829 TATATATATT
8839 ATAAATTTT-A-ATTTTTAAT-ATTTATAAAATATGAAATATTTA
1 ATAAATTTTAATATTTTTAATAATTTATAAAATAT-AAAT-TTTA
*
8881 GATAAATTTTAATATTTTTAATAATTTATAATATATAAATTTTA
1 -ATAAATTTTAATATTTTTAATAATTTATAAAATATAAATTTTA
*
8925 ATATATTT
1 ATAAATTT
8933 ATATTTAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
43 16 0.35
44 5 0.11
45 13 0.28
46 12 0.26
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (43 bp):
ATAAATTTTAATATTTTTAATAATTTATAAAATATAAATTTTA
Found at i:8904 original size:19 final size:20
Alignment explanation
Indices: 8877--8914 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8867 ATATGAAATA
8877 TTTAGATAAATTT-TAATATT
1 TTTAGAT-AATTTATAATATT
8897 TTTA-ATAATTTATAATAT
1 TTTAGATAATTTATAATAT
8915 ATAAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TTTAGATAATTTATAATATT
Found at i:9388 original size:2 final size:2
Alignment explanation
Indices: 9376--9418 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
9366 GCCGCCATCT
*
9376 TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC -C TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9417 TC
1 TC
9419 GGCACTATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:12124 original size:2 final size:2
Alignment explanation
Indices: 12117--12154 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
12107 TTGTTAGAAA
12117 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
12155 GGATTAAGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12851 original size:24 final size:24
Alignment explanation
Indices: 12819--12864 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
12809 AGCCTTACTT
12819 GGCTTTAATCAATCTAATTAATAA
1 GGCTTTAATCAATCTAATTAATAA
12843 GGCTTTAATCAATCTAATTAAT
1 GGCTTTAATCAATCTAATTAAT
12865 TACCTAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (24 bp):
GGCTTTAATCAATCTAATTAATAA
Found at i:15540 original size:21 final size:20
Alignment explanation
Indices: 15505--15549 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
15495 ATAGTAAATA
*
15505 AAAAAATAATTAATGATGTT
1 AAAAAATAATTAATGATGAT
* *
15525 AAAAAATATTTAAATGTTGAT
1 AAAAAATAATT-AATGATGAT
15546 AAAA
1 AAAA
15550 TATTAACGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (20 bp):
AAAAAATAATTAATGATGAT
Found at i:16503 original size:16 final size:16
Alignment explanation
Indices: 16465--16505 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
16455 AAACATATTA
*
16465 AATTAAAATTAAAATT
1 AATTAAATTTAAAATT
*
16481 AACTAAATTTAAAATT
1 AATTAAATTTAAAATT
*
16497 ATTTAAATT
1 AATTAAATT
16506 CAAATAATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTAAATTTAAAATT
Found at i:16990 original size:20 final size:20
Alignment explanation
Indices: 16967--17010 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
16957 AACTAATAAA
16967 ATAAAAT-TATAACTATTATT
1 ATAAAATATATAACTA-TATT
*
16987 ATAAAATATATAATTATATT
1 ATAAAATATATAACTATATT
17007 ATAA
1 ATAA
17011 TAAAAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
ATAAAATATATAACTATATT
Found at i:17681 original size:18 final size:18
Alignment explanation
Indices: 17633--17696 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
17623 AGAATTGAGT
*
17633 AAATTTTATTAATAATAA
1 AAATTTTTTTAATAATAA
* *
17651 AAATATTTATAATAATAA
1 AAATTTTTTTAATAATAA
** *
17669 TGATTTTTTTAAT-TTAA
1 AAATTTTTTTAATAATAA
*
17686 AATTTTTTTTA
1 AAATTTTTTTA
17697 TATTAATTAT
Statistics
Matches: 35, Mismatches: 11, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
17 11 0.31
18 24 0.69
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
AAATTTTTTTAATAATAA
Found at i:17724 original size:13 final size:13
Alignment explanation
Indices: 17690--17725 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
17680 ATTTAAAATT
17690 TTTTTTATATTAA
1 TTTTTTATATTAA
* *
17703 TTATCTATATTAA
1 TTTTTTATATTAA
17716 TTTTTTATAT
1 TTTTTTATAT
17726 CTGTATTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTTTATATTAA
Found at i:17735 original size:29 final size:28
Alignment explanation
Indices: 17686--17743 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
17676 TTTAATTTAA
* *
17686 AATTTTTTTTATATTAATTATCTATATT
1 AATTTTTTATATATTAATTATATATATT
* *
17714 AATTTTTTATATCTGTATTTATATATATT
1 AATTTTTTATATAT-TAATTATATATATT
17743 A
1 A
17744 TATATAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (28 bp):
AATTTTTTATATATTAATTATATATATT
Found at i:17771 original size:13 final size:13
Alignment explanation
Indices: 17755--17779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17745 ATATAAATTA
17755 TAAATATTTTTAC
1 TAAATATTTTTAC
17768 TAAATATTTTTA
1 TAAATATTTTTA
17780 TTTTAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAATATTTTTAC
Found at i:18659 original size:2 final size:2
Alignment explanation
Indices: 18654--18694 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
18644 TTGTGTGTGC
18654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18695 AATTATAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:22709 original size:2 final size:2
Alignment explanation
Indices: 22696--22736 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
22686 GAGTAGATAC
*
22696 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22737 AAATAAACTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:23420 original size:2 final size:2
Alignment explanation
Indices: 23415--23451 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
23405 TTTTTATCCA
23415 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
23452 ATATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:23456 original size:2 final size:2
Alignment explanation
Indices: 23451--23478 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23441 TCTCTCTCTC
23451 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23479 ATTCGACCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23836 original size:5 final size:5
Alignment explanation
Indices: 23828--23863 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
23818 TTATTCATTC
23828 ATACT ATACT ATACT ATACT ATACT ATA-T ATA-T ATA
1 ATACT ATACT ATACT ATACT ATACT ATACT ATACT ATA
23864 TATTTATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (5 bp):
ATACT
Found at i:23848 original size:15 final size:14
Alignment explanation
Indices: 23828--23875 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 14
23818 TTATTCATTC
23828 ATACTATACTATACT
1 ATACTATACTATA-T
23843 ATACTATACTATAT
1 ATACTATACTATAT
*
23857 ATA-TATA-TATTT
1 ATACTATACTATAT
23869 ATA-TATA
1 ATACTATA
23876 AATCCTACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 11 0.34
13 4 0.12
14 4 0.12
15 13 0.41
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (14 bp):
ATACTATACTATAT
Found at i:28255 original size:2 final size:2
Alignment explanation
Indices: 28248--28279 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
28238 AACATTATGA
28248 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28280 GTAAATGCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:31500 original size:50 final size:50
Alignment explanation
Indices: 31425--31524 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
31415 CAAATAGAGG
* *
31425 ATGTCATAATCCTCTTCTCAGACTAGCATGTCTGTTGCTGAAAGTTCATT
1 ATGTCATAACCCTCTTCTCAGACTAGCATGTCTGTTGCTGAAAGGTCATT
31475 ATGTCATAACCCTCTTCTCAGACTAGCATGTCTGTTGCTGAAAGGTCATT
1 ATGTCATAACCCTCTTCTCAGACTAGCATGTCTGTTGCTGAAAGGTCATT
31525 TACTTTTTTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (50 bp):
ATGTCATAACCCTCTTCTCAGACTAGCATGTCTGTTGCTGAAAGGTCATT
Found at i:33929 original size:2 final size:2
Alignment explanation
Indices: 33922--33961 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
33912 ATATAGAAGG
33922 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
33962 GCTATTAGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:38086 original size:20 final size:20
Alignment explanation
Indices: 38049--38089 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
38039 AACACAGATT
*
38049 CATATTATTTTACTTATATC
1 CATATTATTTTACATATATC
* *
38069 CATATTGTTTTAGATATATC
1 CATATTATTTTACATATATC
38089 C
1 C
38090 CTATATATCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (20 bp):
CATATTATTTTACATATATC
Found at i:38185 original size:2 final size:2
Alignment explanation
Indices: 38178--38206 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
38168 CTGGATAATT
38178 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
38207 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:38249 original size:2 final size:2
Alignment explanation
Indices: 38206--38234 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
38196 TCTCTCTCTC
38206 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38235 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:38747 original size:48 final size:48
Alignment explanation
Indices: 38672--38767 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
38662 ATCTTTGCCT
*
38672 TTTTCTTAATTAATTAAGCTATACATCTATGTTAATAAAAACATATCA
1 TTTTATTAATTAATTAAGCTATACATCTATGTTAATAAAAACATATCA
38720 TTTTATTAATTAATTAAGCTATACATCTATGTTAATAAAAACATATCA
1 TTTTATTAATTAATTAAGCTATACATCTATGTTAATAAAAACATATCA
38768 ACTTAGTTGC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.42
Consensus pattern (48 bp):
TTTTATTAATTAATTAAGCTATACATCTATGTTAATAAAAACATATCA
Found at i:39585 original size:6 final size:7
Alignment explanation
Indices: 39570--39599 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
39560 ATCTCACATC
39570 TTTTGTT
1 TTTTGTT
39577 TTTTGTT
1 TTTTGTT
39584 TTTTGTT
1 TTTTGTT
*
39591 TTTTCTT
1 TTTTGTT
39598 TT
1 TT
39600 GGGTGCATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (7 bp):
TTTTGTT
Found at i:41903 original size:3 final size:3
Alignment explanation
Indices: 41890--41936 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
41880 GTAATTAGCT
41890 TAA TCAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
41936 T
1 T
41937 TATTATTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:42316 original size:3 final size:3
Alignment explanation
Indices: 42308--42350 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
42298 TGGGTGGACT
42308 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
42351 GTCTTTAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Done.