Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1643
Parameters: 2 7 7 80 10 50 1000
Length:  48544

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3210--3265
17
3.3
17
74
0
58
1
19
0
78
0.84
4502--5049
32
17.2
32
92
3
828
18
18
32
30
1.95
5018--5703
27
25.2
27
90
2
980
29
14
33
22
1.94
13490--13521
10
3.2
10
95
0
55
0
12
0
87
0.54
13483--13548
24
3.1
21
77
16
73
4
18
0
77
0.94
14560--15135
32
18.2
32
91
2
839
18
17
32
30
1.95
15133--16003
27
32.0
27
88
3
1228
29
14
33
23
1.93
15133--16003
191
4.6
189
88
3
1255
29
14
33
23
1.93
17060--17088
11
2.6
11
100
0
58
0
0
6
93
0.36
23820--23851
10
3.2
10
95
0
55
0
12
0
87
0.54
23813--23878
24
3.1
21
77
16
73
4
18
0
77
0.94
24868--25475
32
19.2
32
90
2
851
18
17
32
31
1.95
25473--26451
27
36.0
27
89
2
1433
28
14
34
22
1.93
27506--27534
10
3.0
10
95
5
51
0
0
17
82
0.66
31056--31112
21
2.7
21
97
0
105
33
10
19
36
1.86
31168--31235
19
3.9
19
78
21
85
35
11
14
38
1.83
31189--31213
13
1.9
13
100
0
50
36
16
16
32
1.90
31170--31232
32
2.0
32
96
0
117
34
12
15
36
1.86
31275--31300
13
2.0
13
100
0
52
30
15
15
38
1.88
36145--36200
17
3.3
17
74
0
58
1
19
0
78
0.84
36867--36911
22
2.0
22
83
12
56
2
11
8
77
1.07
38184--38366
34
5.4
34
91
0
285
40
34
0
24
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43073--43255
34
5.4
34
89
0
258
40
33
0
25
1.56
43869--43932
19
3.3
19
75
10
58
48
1
1
48
1.20
44199--44244
15
2.9
16
83
9
58
58
0
0
41
0.98
44817--44852
8
4.4
8
89
6
54
44
0
0
55
0.99
44808--44852
16
2.7
17
82
6
65
46
0
0
53
1.00
44808--44880
33
2.1
35
82
9
89
43
0
0
56
0.99
47444--47469
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!