genome.fa.s1644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1644
Parameters: 2 7 7 80 10 50 1000
Length:  134112

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5537--5599	31	2.0	31	90	6	101	36	23	12	26	1.91
5763--5825	17	3.6	17	77	14	65	3	14	30	52	1.57
6239--6331	38	2.4	38	89	0	141	20	20	15	44	1.87
6655--6716	13	4.8	13	96	4	108	16	0	0	83	0.64
6655--6716	20	3.2	19	91	8	99	16	0	0	83	0.64
6655--6716	6	9.7	6	89	10	88	16	0	0	83	0.64
7247--8106	42	20.5	42	76	3	564	35	18	28	17	1.94
7196--8009	84	9.7	84	81	1	682	35	18	28	17	1.94
7247--8106	126	6.8	126	77	5	657	35	18	28	17	1.94
7196--8022	168	4.9	168	81	1	854	35	18	28	17	1.94
8227--8370	44	3.3	43	84	5	155	39	14	25	20	1.90
15255--15379	38	3.3	38	91	2	182	17	17	17	47	1.83
15648--15687	7	5.6	7	85	5	53	15	2	0	82	0.77
17774--17883	46	2.4	46	84	0	139	42	10	25	20	1.85
17897--18114	35	6.3	35	75	2	170	44	13	20	22	1.86
18128--18247	36	3.4	36	77	12	124	21	31	11	35	1.90
18116--18227	33	3.4	32	79	15	120	18	30	14	36	1.91
18116--18247	33	3.9	33	75	18	112	20	31	12	34	1.90
18116--18247	69	1.9	67	82	8	160	20	31	12	34	1.90
18314--18583	43	6.0	43	82	10	333	25	25	18	30	1.98
18263--18640	92	4.1	92	94	1	621	25	25	17	31	1.97
18711--19283	52	9.9	55	74	15	464	24	24	13	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18541--19436	174	5.2	174	93	1	1414	23	24	14	37	1.92
20144--20272	52	2.5	52	93	0	222	34	17	17	29	1.94
23529--23555	13	2.1	13	100	0	54	40	14	14	29	1.86
31547--31591	23	2.0	24	82	8	58	40	22	8	28	1.84
32489--32540	21	2.5	21	80	0	59	25	0	5	69	1.10
43527--43570	19	2.3	19	100	0	88	29	0	9	61	1.27
45537--45575	21	2.0	21	90	10	64	56	5	2	35	1.35
45851--45876	2	13.0	2	100	0	52	50	0	0	50	1.00
48394--48418	5	5.0	5	100	0	50	20	0	0	80	0.72
49202--49255	24	2.3	24	75	12	58	51	0	0	48	1.00
51694--51733	13	3.2	13	85	7	64	45	2	5	47	1.38
52997--53034	20	1.9	20	84	10	51	39	2	0	57	1.12
55137--55281	58	2.5	58	75	5	143	47	13	12	26	1.78
55667--55691	13	1.9	13	100	0	50	32	16	16	36	1.90
55700--55828	52	2.5	52	88	2	170	34	17	18	30	1.94
58927--59036	58	1.9	57	83	1	139	50	13	10	26	1.73
59022--59169	59	2.5	59	78	8	135	47	8	8	35	1.66
60830--60881	20	2.5	21	87	3	70	34	13	17	34	1.89
68237--68271	2	17.5	2	100	0	70	51	0	0	48	1.00
74999--75278	140	2.0	140	96	0	515	39	5	18	36	1.74
82433--82467	2	17.5	2	87	0	52	48	2	0	48	1.16
87909--91467	273	13.0	273	99	0	7052	42	6	13	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87909--91467	818	4.3	819	99	0	7052	42	6	13	37	1.70
92683--92709	2	13.5	2	100	0	54	51	0	0	48	1.00
96122--96151	2	15.0	2	92	0	51	50	3	0	46	1.18
98090--98136	14	2.9	16	78	18	53	48	4	0	46	1.21
98132--98158	5	5.4	5	100	0	54	44	0	0	55	0.99
107840--107887	16	3.0	16	87	6	71	64	6	0	29	1.18
107861--107910	22	2.3	22	92	0	82	62	2	0	36	1.07
107875--107916	15	2.9	15	86	13	61	59	0	0	40	0.97
110066--110191	32	3.8	32	84	10	132	48	1	4	45	1.33
110066--110191	64	1.9	67	84	12	172	48	1	4	45	1.33
111770--111803	18	1.9	17	88	5	50	35	0	0	64	0.94
111870--111918	27	1.9	26	88	12	75	48	0	0	51	1.00
112861--112891	2	15.5	2	100	0	62	0	48	0	51	1.00
114754--114791	20	1.9	20	88	0	58	68	0	0	31	0.90
114747--114808	30	2.1	29	88	8	90	69	0	0	30	0.89
115083--115350	89	3.0	91	81	3	301	39	9	8	42	1.68
116211--116249	7	5.4	7	87	6	60	74	0	0	25	0.82
116211--116252	15	2.7	16	85	7	59	73	0	0	26	0.83
116211--116253	22	2.0	22	100	0	86	72	0	0	27	0.85
116233--116299	34	1.9	34	87	6	98	55	4	0	40	1.20
116283--116330	22	2.2	22	96	0	87	45	0	0	54	0.99
121211--121254	15	2.8	15	80	19	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121248--121287	20	2.1	19	90	4	62	40	0	5	55	1.22
121254--121298	20	2.2	20	84	4	54	46	0	4	48	1.22
128224--128391	88	1.9	87	92	1	282	34	17	16	31	1.92
131900--131973	20	3.7	20	85	0	94	36	10	14	37	1.82
132950--132993	18	2.3	20	85	11	58	61	2	0	36	1.09
133959--134024	27	2.4	27	82	5	71	24	21	27	27	1.99

Tables:   1

The End!