Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1648
Parameters: 2 7 7 80 10 50 1000
Length:  63207

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72--128
17
3.5
17
79
16
57
42
0
1
56
1.10
807--840
16
2.2
15
89
5
50
82
0
0
17
0.67
810--850
11
3.7
11
84
12
57
75
0
0
24
0.80
809--844
12
3.2
12
84
15
58
77
0
0
22
0.76
1025--1077
23
2.3
23
87
6
72
67
0
0
32
0.91
1025--1076
11
4.5
11
83
13
61
69
0
0
30
0.89
2833--2865
9
3.7
9
91
0
57
45
33
9
12
1.73
4132--4170
14
2.8
14
88
7
53
0
12
2
84
0.72
4130--4172
13
3.2
13
86
3
59
0
11
6
81
0.87
6187--6229
19
2.3
19
84
8
52
51
4
0
44
1.22
6226--6310
17
4.8
17
72
18
59
47
2
0
50
1.14
7858--7927
22
2.9
25
77
18
76
37
0
2
60
1.12
7873--7928
23
2.5
22
83
16
71
41
0
1
57
1.09
7893--7948
28
2.0
28
86
6
78
42
0
5
51
1.24
8187--8228
19
2.2
20
87
12
61
45
0
0
54
0.99
9502--9541
16
2.5
16
87
0
53
30
2
17
50
1.59
9547--9581
17
2.1
17
89
5
54
31
5
8
54
1.54
11477--11563
12
7.2
11
74
17
52
67
4
1
26
1.17
11459--11563
51
2.1
51
80
8
117
64
4
3
26
1.30
11325--11642
155
2.0
155
85
7
421
60
6
4
28
1.41
11804--11828
13
1.9
13
100
0
50
16
32
4
48
1.64
15018--15046
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16286--16335
15
3.3
15
82
2
64
66
0
0
34
0.92
16274--16335
27
2.2
26
83
13
70
67
0
1
30
1.00
16293--16352
16
3.8
16
82
8
61
56
3
0
40
1.16
16460--16500
14
2.6
17
78
21
54
51
0
7
41
1.30
17036--17134
5
19.4
5
68
13
51
70
0
25
4
1.04
17113--17171
29
2.0
29
100
0
118
66
3
20
10
1.36
17933--17958
13
2.0
13
100
0
52
53
7
0
38
1.30
18167--18197
16
1.9
16
93
0
53
45
3
3
48
1.34
18265--18302
18
2.1
19
90
5
60
47
2
10
39
1.52
18574--18619
23
2.0
24
91
4
76
32
2
4
60
1.28
19579--19653
20
3.8
20
67
19
50
46
0
0
53
1.00
24378--24402
11
2.3
11
100
0
50
40
0
0
60
0.97
25446--25478
17
1.9
17
93
0
57
72
0
0
27
0.85
28609--28639
2
16.0
2
93
6
55
51
0
0
48
1.00
31144--31180
18
2.0
19
94
5
67
62
0
0
37
0.96
31583--31612
15
2.0
15
93
0
51
43
0
0
56
0.99
31583--31623
20
2.0
20
90
0
64
46
0
0
53
1.00
31593--31635
20
2.2
19
87
4
59
53
0
0
46
1.00
32062--32112
11
4.7
11
75
2
50
37
0
1
60
1.08
32094--32169
30
2.6
29
82
10
84
44
0
0
55
0.99
32094--32163
24
2.7
25
82
10
79
45
0
0
54
0.99
32589--32635
22
2.1
23
84
4
60
42
0
2
55
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32749--32793
15
3.0
15
76
0
54
53
2
0
44
1.13
34982--35029
10
4.6
10
80
15
53
77
2
0
20
0.88
34987--35029
19
2.2
20
84
8
63
76
2
0
20
0.89
35234--35277
15
3.0
14
80
9
52
59
0
0
40
0.98
37920--37944
4
6.2
4
100
0
50
24
0
0
76
0.80
38307--38348
2
21.0
2
100
0
84
50
0
0
50
1.00
39775--39815
22
1.9
21
90
5
64
39
0
0
60
0.96
41005--41094
28
3.4
25
82
8
99
26
7
20
45
1.78
41150--41198
20
2.5
20
82
0
62
10
44
4
40
1.57
45578--45667
28
3.4
27
80
8
87
25
7
21
45
1.78
45723--45768
20
2.3
20
84
0
56
10
47
4
36
1.58
46004--46030
13
2.1
13
100
0
54
37
25
0
37
1.57
51452--51504
20
2.5
21
76
14
56
41
0
1
56
1.10
51954--51985
14
2.3
14
94
0
55
50
15
12
21
1.77
53138--53168
2
16.0
2
93
6
55
48
0
0
51
1.00
54162--54237
38
2.0
38
82
12
93
51
2
2
43
1.29
56069--56106
2
19.0
2
94
0
67
47
0
0
52
1.00
56509--56564
28
2.1
25
83
9
67
50
0
0
50
1.00
56502--56579
29
2.8
28
74
18
74
52
0
0
47
1.00
56678--56716
14
2.6
16
88
8
55
53
0
0
46
1.00
56673--56724
14
3.6
14
75
12
52
48
0
1
50
1.12
57787--57836
15
3.5
15
73
15
52
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57894--57940
20
2.5
18
83
12
67
65
0
0
34
0.93
57880--57942
21
3.0
21
80
11
67
65
0
0
34
0.93
58975--59010
2
18.0
2
100
0
72
50
0
0
50
1.00
60430--60484
25
2.1
27
90
6
87
47
0
0
52
1.00

Tables:   1

The End!