Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold165
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1947055
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.31
Warning! 52078 characters in sequence are not A, C, G, or T
File 6 of 11
Found at i:1224031 original size:20 final size:19
Alignment explanation
Indices: 1224008--1224048 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
1223998 ACATTATGCT
1224008 TTGTATCGATACATAGACAA
1 TTGTATCGATACAT-GACAA
*
1224028 TTGTATTGATACATGA-AA
1 TTGTATCGATACATGACAA
1224046 TTG
1 TTG
1224049 GCAGTAGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 2 0.10
20 13 0.65
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATGACAA
Found at i:1224097 original size:20 final size:20
Alignment explanation
Indices: 1224072--1224124 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
1224062 TACCACTATT
*
1224072 TGTATCGATACATGGT-ACAA
1 TGTATCGATACATGATGA-AA
*
1224092 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAA
1224112 TGTATCGATACAT
1 TGTATCGATACAT
1224125 TGCTTGTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:1229305 original size:47 final size:47
Alignment explanation
Indices: 1229240--1229375 Score: 155
Period size: 47 Copynumber: 2.9 Consensus size: 47
1229230 TGGAAACTAC
* * * * *
1229240 TGCCGTGGAAGCTAGAGTTACTATCGATTGCTCGTGGAAGCTGCTGT
1 TGCCATGGAAGCTGGAGTTACTGTCGGTTGCTCATGGAAGCTGCTGT
* * * * *
1229287 TGCCCTGGAAGCTGGAGTTGCTGCCGGTTGCTCTTGGAAGCTGCTTT
1 TGCCATGGAAGCTGGAGTTACTGTCGGTTGCTCATGGAAGCTGCTGT
* * *
1229334 TACCATGGAAACTGGAGTTACTGTTGGTTGCTCATGGAAGCT
1 TGCCATGGAAGCTGGAGTTACTGTCGGTTGCTCATGGAAGCT
1229376 ACTATTGTCA
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.31
Consensus pattern (47 bp):
TGCCATGGAAGCTGGAGTTACTGTCGGTTGCTCATGGAAGCTGCTGT
Found at i:1230117 original size:9 final size:9
Alignment explanation
Indices: 1230103--1230133 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
1230093 TTTACTTTCA
1230103 TTTTTTTAC
1 TTTTTTTAC
*
1230112 TTTTTTTAA
1 TTTTTTTAC
1230121 TTTTTTTAC
1 TTTTTTTAC
1230130 TTTT
1 TTTT
1230134 GATTTCTACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:1230673 original size:43 final size:43
Alignment explanation
Indices: 1230615--1231379 Score: 660
Period size: 42 Copynumber: 18.1 Consensus size: 43
1230605 TGGACTAGAC
* * * * * *
1230615 AGTCTTCAAGGTCAAAGCCGACAAGTAGACTTAGGGATAGAAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * *
1230658 AGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * * * * * *
1230701 AGTCTCTAGGGTCAAAGTCGACAGGAAAACTTTAGGGATAAGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGAC-TAAGGGATAGGAA
* * * * *
1230745 AGTCTCCAAGGTCGAAGCCGTTAAGCATACT-AGGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * * **
1230787 AGCCTCCAGGGTCAAAGTCGACAACCAGACTAAGGGA-AGGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * *
1230829 AGT-TCCTAGTGTTAAAGCCGATAGGCAGACTAAGGGATTGGAA
1 AGTCTCCAAG-GTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * *
1230872 AGTCACTAGGGTCAAAGCCGATAGGCAGACTAAAGGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * * **
1230915 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTGACGGA-AAAAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * *
1230957 AGTCTCCAATGTCAAAGCCAAGAGGCAGACTAAGGG-TAGGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * * *
1230999 AGTCTCCAGGGTCAAAGTCGACAGGCAGACTGAGGGA-AAGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * * *
1231041 AGTCTCTAGGGTCGAAGTCGATAGGCAGACTAAGGGATAGAAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * *
1231084 AGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAGGG-TAAGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * * *
1231126 AGTCTCTAGGGTCAAAGCCGATAGGTAGACTGAGGGA-AAGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * * * *
1231168 AGT-TTCTAGGTCAAAGTCGATAGGTAAACTCAA-GG-TAGGGA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACT-AAGGGATAGGAA
* * * *
1231209 AGTCTTCAGGGTCAAAGCTGATAGGCAGACTAAGGGA-AAGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * *
1231251 AGTCTCCAAGGTCAAAACTGATAGGCAGACTTAGGG-TAGAAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
* * * *
1231293 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTGAGGGA-AAGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
*
1231335 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTAAGGG-TAGGAA
1 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
1231377 AGT
1 AGT
1231380 TTCTAGAAGT
Statistics
Matches: 585, Mismatches: 120, Indels: 35
0.79 0.16 0.05
Matches are distributed among these distances:
41 35 0.06
42 342 0.58
43 173 0.30
44 35 0.06
ACGTcount: A:0.37, C:0.17, G:0.30, T:0.17
Consensus pattern (43 bp):
AGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGATAGGAA
Found at i:1230799 original size:86 final size:87
Alignment explanation
Indices: 1230645--1231142 Score: 264
Period size: 85 Copynumber: 5.8 Consensus size: 87
1230635 ACAAGTAGAC
* *
1230645 TTAGGGATAGAAAAGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGTCTCTAG
1 TTAGGGATAGAAAAGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGCCTCCAG
1230710 GGTCAAAGTCGACAGGAAAACT
66 GGTCAAAGTCGACAGGAAAACT
* * ** * *
1230732 TTAGGGATA-AGAAAGTCTCCAAGGTCGAAGCCGTTAAGCATAC-TAGGGGTAGGAAAGCCTCCA
1 TTAGGGATAGA-AAAGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGCCTCCA
*** *
1230795 GGGTCAAAGTCGACAACCAGAC-
65 GGGTCAAAGTCGACAGGAAAACT
* * * * * * * * * * * *
1230817 TAAGGGA-AGGAAAGT-TCCTAGTGTTAAAGCCGATAGGCAGACTAAGGGATTGGAAAGTCACTA
1 TTAGGGATAGAAAAGTCTCCAAG-ATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGCCTCCA
* * * *
1230880 GGGTCAAAGCCGATAGGCAGAC-
65 GGGTCAAAGTCGACAGGAAAACT
* * * * * * * * * * ** * *
1230902 TAAAGGATAGGAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTGACGGA-AAAAAAGTCTCCAA
1 TTAGGGATAGAAAAGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGCCTCCAG
* * * * * *
1230966 TGTCAAAGCCAAGAGGCAGAC-
66 GGTCAAAGTCGACAGGAAAACT
* * * * * * * * * *
1230987 TAAGGG-TAGGAAAGTCTCCAGGGTCAAAGTCGACAGGCAGACTGAGGGA-AAGAAAGTCTCTAG
1 TTAGGGATAGAAAAGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGCCTCCAG
* * * *
1231050 GGTCGAAGTCGATAGGCAGAC-
66 GGTCAAAGTCGACAGGAAAACT
* * * * * * * *
1231071 TAAGGGATAGAAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTAAGGG-TAAGAAAGTCTCTAG
1 TTAGGGATAGAAAAGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGCCTCCAG
1231135 GGTCAAAG
66 GGTCAAAG
1231143 CCGATAGGTA
Statistics
Matches: 338, Mismatches: 65, Indels: 18
0.80 0.15 0.04
Matches are distributed among these distances:
83 5 0.01
84 93 0.28
85 133 0.39
86 68 0.20
87 39 0.12
ACGTcount: A:0.37, C:0.17, G:0.30, T:0.16
Consensus pattern (87 bp):
TTAGGGATAGAAAAGTCTCCAAGATCAAAGCCGACAAGCAGACTTAGGGATAGGAAAGCCTCCAG
GGTCAAAGTCGACAGGAAAACT
Found at i:1238880 original size:22 final size:23
Alignment explanation
Indices: 1238855--1238899 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
1238845 ATTCTTATTA
*
1238855 ATTAAGCAAATATTG-ATGAATG
1 ATTAAGAAAATATTGAATGAATG
* *
1238877 ATTATGAAAATGTTGAATGAATG
1 ATTAAGAAAATATTGAATGAATG
1238900 CCATGAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.33
Consensus pattern (23 bp):
ATTAAGAAAATATTGAATGAATG
Found at i:1241250 original size:43 final size:43
Alignment explanation
Indices: 1241023--1242165 Score: 549
Period size: 43 Copynumber: 26.9 Consensus size: 43
1241013 TTCATCTTTT
* * * * * **
1241023 GTCTGCCCGTCAGCTCAGACCTGGGAGACTTCCTTCATCTTTC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * *
1241066 ATCTACCCGTCGGCTTAGACCC-AGAGACTTCTTTTATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * ** *
1241108 ATCTACCAGTCGACTTAGAATCG-GAAGACTT--TTCCATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAG-AGACTTCCTT-TATCAATC
** * *
1241150 GTCTGCCTATCGGCTTAGACTCGAGAGACTT-TTTTATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * *
1241192 ATCTGCCCATTGGCTTAGACCCGAGAGACTTCCTTTATTAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * *
1241235 GTCTGCCCGTCGGCTTAGACCCGAGATACTT--TTCCATTAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTT-TATCAATC
* * *
1241277 GTCTGCCCGTCAGCTTAGACCCGGGAGACTTCCTTTGTCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * *
1241320 ATCTACCTGTCGGCTTAGACTC-AGGAGACTATTCC---ATCAATT
1 GTCTGCCCGTCGGCTTAGACCCGA-GAGAC--TTCCTTTATCAATC
* * ** ** ** * * *
1241362 ATCTACCTATCGTTTTAGACTTGGGAGACTTCTTTTGTCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * * **
1241405 ATTTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTCATCTTTC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * * *
1241448 GTTTGCCCGTTGGCTCAGACTCGGGAGAATTCCTTTATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * ** * *
1241491 GTCTACCCATTGGCTTAGATTCGAGTGACTT--TTCCATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTT-TATCAATC
* * * * * *
1241533 ATCTGCCCTTCAGCTTAAACCCGAGAGACTTTCTTTGTCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * * *** * *
1241576 ATCTACCTGTCGACTCAGAGTAGGGAGACTTCCTTTGTCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * * * *
1241619 GTCTGGCCGAT-GGCTTAGACTCGGGAGACTTCTTTTGTTAGTC
1 GTCTGCCCG-TCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* ** * * *
1241662 ATCTGCATGTCGGCTTAGACTCGAGAGACTTTCTTTGTCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * *
1241705 GTCGGCCTGTCAGCTTAGACCCGAGAGACTT--TTCCATCAATT
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTT-TATCAATC
* * * * * * *
1241747 GTCTACTCATCGGCTTAGACCTGAGAGACCTT-ATTTGTCAATT
1 GTCTGCCCGTCGGCTTAGACCCGAGAGA-CTTCCTTTATCAATC
** * *
1241790 GTCAACCCGTCGGCTCAGACCCGGGAGACTT--TTCTATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTT-TATCAATC
* * * * * *
1241832 GTTTGCCCATCGACTTAGACTCGGGATACTTCCTTTATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * * * *
1241875 GTCTGCCCATCGGCTTAGACCTGGGAAACTT--TTCCATTAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTT-TATCAATC
*** * ** * *
1241917 GTCTGCATATTGGCTTAGACTTGGGAGACTTCCTTTGTCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* ** *
1241960 ATCTGCCC-TCGGCTTAGACTTGGGAGACTT--TTTCATCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTT-ATCAATC
* * * *
1242001 GTCTGCCCGTCGGCTTAGA-CCTAGGAGACTTCATTTGTCAATT
1 GTCTGCCCGTCGGCTTAGACCCGA-GAGACTTCCTTTATCAATC
* * ** ** * * *
1242044 GTTTGCCTGTC-AATTCAGACTTGGGAGACTT-TTTTATCAATT
1 GTCTGCCCGTCGGCTT-AGACCCGAGAGACTTCCTTTATCAATC
* * * *
1242086 GTCCGCCCGTCTGCTTAGATCCGAGAGACTTCCTTTCTCAATC
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
* * * *
1242129 GTCTGCCCATCGGCTTAAACCCGACAAACTTCCTTTA
1 GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTA
1242166 CCAACCGTTT
Statistics
Matches: 837, Mismatches: 224, Indels: 78
0.73 0.20 0.07
Matches are distributed among these distances:
40 6 0.01
41 25 0.03
42 349 0.42
43 439 0.52
44 14 0.02
45 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (43 bp):
GTCTGCCCGTCGGCTTAGACCCGAGAGACTTCCTTTATCAATC
Found at i:1241253 original size:85 final size:83
Alignment explanation
Indices: 1241071--1242151 Score: 560
Period size: 85 Copynumber: 12.7 Consensus size: 83
1241061 CTTTCATCTA
* * * * ** *
1241071 CCCGTCGGCTTAGAC-CCAGAGACTTCTTTTATCAATCATCT-ACCAGTCGACTTAGAATCGGAA
1 CCCGTCGGCTTAGACTCGAGAGACTT-TTTTATCAATCGTCTGCCCA-TCGGCTTAGACCCGGGA
*
1241134 GACTTTTCCATCAATCGTCTG
64 GACTTTT-TATCAATCGTCTG
** * * *
1241155 CCTATCGGCTTAGACTCGAGAGACTTTTTTATCAATCATCTGCCCATTGGCTTAGACCCGAGAGA
1 CCCGTCGGCTTAGACTCGAGAGACTTTTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAGA
*
1241220 CTTCCTTTATTAATCGTCTG
66 CTT--TTTATCAATCGTCTG
* * ** * * *
1241240 CCCGTCGGCTTAGACCCGAGATACTTTTCCATTAATCGTCTGCCCGTCAGCTTAGACCCGGGAGA
1 CCCGTCGGCTTAGACTCGAGAGACTTTTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAGA
* * *
1241305 CTTCCTTTGTCAATCATCTA
66 CTT--TTTATCAATCGTCTG
* * ** ** * * ** **
1241325 CCTGTCGGCTTAGACTC-AGGAGACTATTCCATCAATTATCTACCTATCGTTTTAGACTTGGGAG
1 CCCGTCGGCTTAGACTCGA-GAGACTTTTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAG
* * *
1241389 ACTTCTTTTGTCAATCATTTG
65 AC-T-TTTTATCAATCGTCTG
* * * ** * * * * *
1241410 CCCGTCAGCTTAGACCCGAGAGACTTTCTTCATCTTTCGTTTGCCCGTTGGCTCAGACTCGGGAG
1 CCCGTCGGCTTAGACTCGAGAGACTTT-TTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAG
* *
1241475 AATTCCTTTATCAATCGTCTA
65 ACTT--TTTATCAATCGTCTG
* * * * ** * * * * *
1241496 CCCATTGGCTTAGATTCGAGTGACTTTTCCATCAATCATCTGCCCTTCAGCTTAAACCCGAGAGA
1 CCCGTCGGCTTAGACTCGAGAGACTTTTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAGA
* * *
1241561 CTTTCTTTGTCAATCATCTA
66 C-TT-TTTATCAATCGTCTG
* * * * * * * * * *
1241581 CCTGTCGACTCAGAGTAGGGAGACTTCCTTTGTCAATCGTCTGGCCGAT-GGCTTAGACTCGGGA
1 CCCGTCGGCTTAGACTCGAGAGACTT-TTTTATCAATCGTCT-GCCCATCGGCTTAGACCCGGGA
* * * *
1241645 GACTTCTTTTGTTAGTCATCTG
64 GAC-T-TTTTATCAATCGTCTG
** * * ** * *
1241667 CATGTCGGCTTAGACTCGAGAGACTTTCTTTGTCAATCGTCGGCCTGTCAGCTTAGACCCGAGAG
1 CCCGTCGGCTTAGACTCGAGAGACTTT-TTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAG
* * *
1241732 ACTTTTCCATCAATTGTCTA
65 ACTTTT-TATCAATCGTCTG
* * * * * ** * *
1241752 CTCATCGGCTTAGAC-CTGAGAGACCTTATTTGTCAATTGTCAACCCGTCGGCTCAGACCCGGGA
1 CCCGTCGGCTTAGACTC-GAGAGA-CTTTTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGA
*
1241816 GACTTTTCTATCAATCGTTTG
64 GACTTTT-TATCAATCGTCTG
* * * * * * *
1241837 CCCATCGACTTAGACTCGGGATACTTCCTTTATCAATCGTCTGCCCATCGGCTTAGACCTGGGAA
1 CCCGTCGGCTTAGACTCGAGAGACTT-TTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAG
* *
1241902 ACTTTTCCATTAATCGTCTG
65 ACTTTT-TATCAATCGTCTG
*** * * * * * * **
1241922 CATATTGGCTTAGACTTGGGAGACTTCCTTTGTCAATCATCTGCCC-TCGGCTTAGACTTGGGAG
1 CCCGTCGGCTTAGACTCGAGAGACTT-TTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAG
1241986 ACTTTTTCATCAATCGTCTG
65 ACTTTTT-ATCAATCGTCTG
* * * * * ** ** **
1242006 CCCGTCGGCTTAGAC-CTAGGAGACTTCATTTGTCAATTGTTTGCCTGTC-AATTCAGACTTGGG
1 CCCGTCGGCTTAGACTCGA-GAGACTT-TTTTATCAATCGTCTGCCCATCGGCTT-AGACCCGGG
* *
1242069 AGACTTTTTTATCAATTGTCCG
63 AGAC-TTTTTATCAATCGTCTG
* * * *
1242091 CCCGTCTGCTTAGA-TCCGAGAGACTTCCTTTCTCAATCGTCTGCCCATCGGCTTAAACCCG
1 CCCGTCGGCTTAGACT-CGAGAGACTT-TTTTATCAATCGTCTGCCCATCGGCTTAGACCCG
1242152 ACAAACTTCC
Statistics
Matches: 763, Mismatches: 204, Indels: 59
0.74 0.20 0.06
Matches are distributed among these distances:
84 121 0.16
85 475 0.62
86 161 0.21
87 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (83 bp):
CCCGTCGGCTTAGACTCGAGAGACTTTTTTATCAATCGTCTGCCCATCGGCTTAGACCCGGGAGA
CTTTTTATCAATCGTCTG
Found at i:1241593 original size:128 final size:128
Alignment explanation
Indices: 1241024--1242019 Score: 473
Period size: 128 Copynumber: 7.8 Consensus size: 128
1241014 TCATCTTTTG
* * * * * ** * *
1241024 TCTGCCCGTCAGCTCAGACCTGGGAGACTTCCTTCATCTTTCATCTACCCGTCGGCTTAGAC-CC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
* * * * * * * *
1241088 AGAGACTTCTTTTATCAATCATCTA-CCAGTCGACTTAGAATCG-GAAGACTTTTCCATCAATCG
66 GGAGAATTCCTTTATCAATCGTCTACCCA-TCGGCTTAGATTCGAG-TGACTTTTCCATCAATCA
** * * * * * * *
1241151 TCTGCCTATCGGCTTAGACTCGAGAGACTTT-TTTATCAATCATCTGCCCATTGGCTTAGACCCG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
* * * * * ** * *
1241215 AGAGACTTCCTTTATTAATCGTCTGCCCGTCGGCTTAGACCCGAGAT-ACTTTTCCATTAATCG
66 GGAGAATTCCTTTATCAATCGTCTACCCATCGGCTTAGATTCGAG-TGACTTTTCCATCAATCA
* * * * * *
1241278 TCTGCCCGTCAGCTTAGACCCGGGAGACTTCCTTTGTCAATCATCTACCTGTCGGCTTAGACTCA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
** * ** * * ***
1241343 GGAGACTATTCC---ATCAATTATCTACCTATCGTTTTAGACTT-GGGAGACTTCTTTTGTCAAT
66 GGAGA--ATTCCTTTATCAATCGTCTACCCATCGGCTTAGA-TTCGAGTGACTT-TTCCATCAAT
1241404 CA
127 CA
* * ** * * * *
1241406 TTTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTCATCTTTCGTTTGCCCGTTGGCTCAGACTCG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
*
1241471 GGAGAATTCCTTTATCAATCGTCTACCCATTGGCTTAGATTCGAGTGACTTTTCCATCAATCA
66 GGAGAATTCCTTTATCAATCGTCTACCCATCGGCTTAGATTCGAGTGACTTTTCCATCAATCA
* * * * * * *
1241534 TCTGCCCTTCAGCTTAAACCCGAGAGACTTTCTTTGTCAATCATCTACCTGTCGACTCAGAGTAG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
* * * * * * * *** * *
1241599 GGAGACTTCCTTTGTCAATCGTCTGGCCGAT-GGCTTAGACTCGGGAGACTTCTTTTGTTAGTCA
66 GGAGAATTCCTTTATCAATCGTCT-ACCCATCGGCTTAGATTCGAGTGACTT-TTCCATCAATCA
** * * * * ** * * * *
1241663 TCTGCATGTCGGCTTAGACTCGAGAGACTTTCTTTGTCAATCGTCGGCCTGTCAGCTTAGACCCG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
* * * * * * * **
1241728 AGAGACTT--TTCCATCAATTGTCTACTCATCGGCTTAGA-CCTGAGAGACCTTATT-TGTCAAT
66 GGAGAATTCCTT-TATCAATCGTCTACCCATCGGCTTAGATTC-GAGTGA-CTT-TTCCATCAAT
**
1241789 TG
127 CA
** * * * * * * * * * *
1241791 TCAACCCGTCGGCTCAGACCCGGGAGACTTT-TCTATCAATCGTTTGCCCATCGACTTAGACTCG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
* * * * * ** * *
1241855 GGATACTTCCTTTATCAATCGTCTGCCCATCGGCTTAGA-CCTGGGAAACTTTTCCATTAATCG
66 GGAGAATTCCTTTATCAATCGTCTACCCATCGGCTTAGATTC-GAGTGACTTTTCCATCAATCA
*** ** ** * * * * * *
1241918 TCTGCATATTGGCTTAGACTTGGGAGACTTCCTTTGTCAATCATCTGCCC-TCGGCTTAGACTTG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
* * *
1241982 GGAGACTT--TTTCATCAATCGTCTGCCCGTCGGCTTAGA
66 GGAGAATTCCTTT-ATCAATCGTCTACCCATCGGCTTAGA
1242020 CCTAGGAGAC
Statistics
Matches: 661, Mismatches: 184, Indels: 49
0.74 0.21 0.05
Matches are distributed among these distances:
125 3 0.00
126 56 0.08
127 204 0.31
128 292 0.44
129 102 0.15
130 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (128 bp):
TCTGCCCGTCAGCTTAGACCCGAGAGACTTTCTTTATCAATCATCTACCCGTCGGCTCAGACTCG
GGAGAATTCCTTTATCAATCGTCTACCCATCGGCTTAGATTCGAGTGACTTTTCCATCAATCA
Found at i:1242087 original size:42 final size:42
Alignment explanation
Indices: 1241812--1242096 Score: 151
Period size: 42 Copynumber: 6.7 Consensus size: 42
1241802 GCTCAGACCC
* * * * * *
1241812 GGGAGACTTTTCTATCAATCGTTTGCCCATCGACTTAGACTC
1 GGGAGACTTTTTTATCAATTGTCTGCCCGTCGAATTAGACTT
* * * * ** *
1241854 GGGATACTTCCTTTATCAATCGTCTGCCCATCGGCTTAGACCT
1 GGGAGACTT-TTTTATCAATTGTCTGCCCGTCGAATTAGACTT
* ** * * *** * **
1241897 GGGAAACTTTTCCATTAATCGTCTGCATATTGGCTTAGACTT
1 GGGAGACTTTTTTATCAATTGTCTGCCCGTCGAATTAGACTT
* * ** **
1241939 GGGAGACTTCCTTTGTCAATCATCTGCCC-TCGGCTTAGACTT
1 GGGAGACTT-TTTTATCAATTGTCTGCCCGTCGAATTAGACTT
* * ** *
1241981 GGGAGACTTTTTCATCAATCGTCTGCCCGTCGGCTTAGACCT
1 GGGAGACTTTTTTATCAATTGTCTGCCCGTCGAATTAGACTT
* * * * *
1242023 AGGAGACTTCATTTGTCAATTGTTTGCCTGTC-AATTCAGACTT
1 GGGAGACTT-TTTTATCAATTGTCTGCCCGTCGAATT-AGACTT
*
1242066 GGGAGACTTTTTTATCAATTGTCCGCCCGTC
1 GGGAGACTTTTTTATCAATTGTCTGCCCGTC
1242097 TGCTTAGATC
Statistics
Matches: 191, Mismatches: 47, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
41 15 0.08
42 101 0.53
43 75 0.39
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (42 bp):
GGGAGACTTTTTTATCAATTGTCTGCCCGTCGAATTAGACTT
Found at i:1243873 original size:150 final size:154
Alignment explanation
Indices: 1243521--1243879 Score: 404
Period size: 165 Copynumber: 2.3 Consensus size: 154
1243511 TTCAATTCCG
* ** * *
1243521 TAAATTTTTTCGAGAGGGTTTTTCTTAATTTTTAATTTTTAAAATTCATCAAATATCATTATTTA
1 TAAATTTTTTCGAG-GGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATTATTTA
* *
1243586 TTTCATATTAATTCATTTTTTAAAAATTCATTCATTTTCTTCAATTTTTATTTTTTTCCTTGAAG
65 TTTCATATTAATTCAGTTTTCAAAAATTCATTCA-----TT--ATTTTTATTTTTTTCCTTGAAG
* * * *
1243651 CTTCCCCTTTTTTAAATACGGTATTTTCTACTCCG
123 ATT---CTTTTTGAAACACGGTATTTTCTACTCCA
* * ** *
1243686 TAAATTTTTTCGAAGGGAATTCTCTTGGTTCGCAATTTTTAAAATTCATCAAACATCATTCTTTA
1 TAAATTTTTTCG-AGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATTATTTA
*
1243751 TTTCATATTAATTTAGTTTTCAAAAATTCATTCA-T-TTTTTA-TTTTTTCCTTGAA-ATT-TTT
65 TTTCATATTAATTCAGTTTTCAAAAATTCATTCATTATTTTTATTTTTTTCCTTGAAGATTCTTT
*
1243811 TTGAAACACGGTGTTTTCTACTCCA
130 TTGAAACACGGTATTTTCTACTCCA
1243836 TAAATTTTTTCGAGTGGATTTTTCTTGGTTTTCAATTTTTAAAA
1 TAAATTTTTTCGAG-GGATTTTTCTTGGTTTTCAATTTTTAAAA
1243880 ATTTTTCAAA
Statistics
Matches: 170, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
149 2 0.01
150 61 0.36
154 2 0.01
155 13 0.08
156 6 0.04
159 1 0.01
165 83 0.49
166 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (154 bp):
TAAATTTTTTCGAGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAACATCATTATTTAT
TTCATATTAATTCAGTTTTCAAAAATTCATTCATTATTTTTATTTTTTTCCTTGAAGATTCTTTT
TGAAACACGGTATTTTCTACTCCA
Found at i:1243922 original size:150 final size:150
Alignment explanation
Indices: 1243658--1243939 Score: 340
Period size: 150 Copynumber: 1.9 Consensus size: 150
1243648 AAGCTTCCCC
* *
1243658 TTTTTTAAATACGGTATTTTCTACTCCGTAAATTTTTTCGAAGGGAATTCTCTTGGTTCGCAATT
1 TTTTTTAAACACGGTATTTTCTACTCCATAAATTTTTTCGAAGGGAATTCTCTTGGTTCGCAATT
* * * *
1243723 TTTAAAATTCATCAAACATCATTCTTTATTTCATATTAATTTAGTTTTC-AAAAATTCATTCATT
66 TTTAAAATTCATCAAACATCATTCTTTATTCCACATTAAATCAGTTTTCAAAAAATTCATTCATT
1243787 TTTTATTTTTTCCTTGAAAT
131 TTTTATTTTTTCCTTGAAAT
* * * **
1243807 TTTTTTGAAACACGGTGTTTTCTACTCCATAAATTTTTTCG-AGTGGATTTTTCTTGGTTTTCAA
1 TTTTTT-AAACACGGTATTTTCTACTCCATAAATTTTTTCGAAG-GGAATTCTCTTGGTTCGCAA
** * * *
1243871 TTTTTAAAAATTTTTCAAATATTA-TCATTTGA-TCCACATTAAATCAG-TTTCAAAAAATTCTT
64 TTTTT-AAAATTCATCAAACATCATTC-TTT-ATTCCACATTAAATCAGTTTTCAAAAAATTCAT
1243933 TCATTTT
126 TCATTTT
1243940 CATGAGTTTT
Statistics
Matches: 111, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
149 8 0.07
150 58 0.52
151 44 0.40
152 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.49
Consensus pattern (150 bp):
TTTTTTAAACACGGTATTTTCTACTCCATAAATTTTTTCGAAGGGAATTCTCTTGGTTCGCAATT
TTTAAAATTCATCAAACATCATTCTTTATTCCACATTAAATCAGTTTTCAAAAAATTCATTCATT
TTTTATTTTTTCCTTGAAAT
Found at i:1244449 original size:14 final size:14
Alignment explanation
Indices: 1244430--1244463 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
1244420 AAAATTTATC
1244430 TTAATTTTTA-AATT
1 TTAATTTTTATAA-T
1244444 TTAATTTTTATAAT
1 TTAATTTTTATAAT
1244458 TTAATT
1 TTAATT
1244464 CCTTTTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTAATTTTTATAAT
Found at i:1245801 original size:21 final size:21
Alignment explanation
Indices: 1245768--1245808 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1245758 CTAAGTAAAA
1245768 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
1245789 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
1245809 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:1245873 original size:20 final size:20
Alignment explanation
Indices: 1245845--1245900 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
1245835 AAAACCCTGA
*
1245845 AAAGTATCGATACACATT-T
1 AAAGTATCGATACACATTGC
*
1245864 AAACGTATCGATACAAATTGC
1 AAA-GTATCGATACACATTGC
*
1245885 ATAGTATCGATACACA
1 AAAGTATCGATACACA
1245901 CAAATATGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 3 0.10
20 26 0.84
21 2 0.06
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (20 bp):
AAAGTATCGATACACATTGC
Found at i:1245971 original size:53 final size:53
Alignment explanation
Indices: 1245888--1246024 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
1245878 AAATTGCATA
*
1245888 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAAGACATTGGCAGTAGCCAAATTT
*
1245942 GTATCGATACACACAATATGTATCGATACAAGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAAGACATTGGCAGTAGCCAAATTT
*
1245995 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
1246025 TTGGAAGTAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 66 0.82
54 14 0.17
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAAGACATTGGCAGTAGCCAAATTT
Found at i:1246067 original size:10 final size:10
Alignment explanation
Indices: 1246048--1246110 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
1246038 AATCTCATTT
*
1246048 TCACTGTTCA
1 TCACTATTCA
1246058 TCACTATTCA
1 TCACTATTCA
*
1246068 TCACTGTTCA
1 TCACTATTCA
* * *
1246078 TGTATCGATACA
1 T-CA-CTATTCA
*
1246090 TCACTGTTCA
1 TCACTATTCA
1246100 TCACTATTCA
1 TCACTATTCA
1246110 T
1 T
1246111 GTATCGATAC
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
10 33 0.82
11 2 0.05
12 5 0.12
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.40
Consensus pattern (10 bp):
TCACTATTCA
Found at i:1246100 original size:32 final size:32
Alignment explanation
Indices: 1246056--1246122 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
1246046 TTTCACTGTT
*
1246056 CATCACTATTCATCACTGTTCATGTATCGATA
1 CATCACTATTCATCACTATTCATGTATCGATA
*
1246088 CATCACTGTTCATCACTATTCATGTATCGATA
1 CATCACTATTCATCACTATTCATGTATCGATA
1246120 CAT
1 CAT
1246123 ATTTGTGAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.37
Consensus pattern (32 bp):
CATCACTATTCATCACTATTCATGTATCGATA
Found at i:1248120 original size:311 final size:307
Alignment explanation
Indices: 1247324--1248435 Score: 1230
Period size: 311 Copynumber: 3.6 Consensus size: 307
1247314 AGAATCACCA
* * * * * *
1247324 TTTCTAATCTTTTTACGTCCTTTAGGGTTACTGGGATACTTTTACGTTGAAGGTATACCCATAGG
1 TTTCT-ATCTTTTTAAGTCCTTTAGGG-TACCGAGATACTTTCACGTCGAAGGTAT-CCCATAAG
* ** * ** * *
1247389 GGCATTTTCATAATTTTTCAAAACTGAGTCCTAGGTTGTCACCGTGTCCGCTTTTATGTCGAAGG
63 GGCATTTTCATAATTTTTTAAAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAGG
* * * * * *
1247454 TAGGTATTTAGGATAGGTTCAC-CATTTTTATAGTCTTTTTAAGTCCTTTAAGGTTGTCGAGATA
128 TAGGCATTTAGGATAGGTTC-CTCCTTTTTCTAGTCTTTTTAGGTCCTTT-AGGTTGTCGGGGTA
* * * * * * * * * *
1247518 CTTTCACGCCAAAGATATCCCT-TAGGAGCATTTTTGTAATTTTCTAGAACCAACTCTTAGGTCA
191 CTTTTACGTCAAAGGTATACCTATAGGGGCATTTTTGTAATTTTTTAGAATCGAGTCTTAGGTTA
* * *
1247582 TCACCGGGTCCGCTTTCATGCTGAAGGTGGGCATTTAAGATAGGTTCATCCCA
256 TCACCGGGTCCGCTTTTATGC-GAAGGTGGGCATTTAGGATAGGTTCATCCCT
* * * * * * *
1247635 TTTCTATCCTTTTTAAGTCTTTTAGAGGTATCGGGATACTTTTACGTCGAAGGTACCCCTTAGGG
1 TTTCTAT-CTTTTTAAGTCCTTTAG-GGTACCGAGATACTTTCACGTCGAAGGTATCCCATAAGG
* ** * ** *
1247700 GTATTTTTGTAA-TTTTTAAAACCAACTTCTAGGTCATCACTAGGTCTGCTTTTATGCCGAAGGT
64 GCATTTTCATAATTTTTTAAAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAGGT
* * *
1247764 GGGCATTTATGATAGGTTCATCCTTTTTCTAGTCTTTTTAGGTCCTTTAGGCTTGTCGGGGTACT
129 AGGCATTTAGGATAGGTTCCTCCTTTTTCTAGTCTTTTTAGGTCCTTTAGG-TTGTCGGGGTACT
*
1247829 TTTACGTCAAAGGTATACCTATAGGGGCATTTTCGTAATTTTTTAGAATCGAGTCTTAGGTTATC
193 TTTACGTCAAAGGTATACCTATAGGGGCATTTTTGTAATTTTTTAGAATCGAGTCTTAGGTTATC
* **
1247894 ACTGGGTCTACTTTTATGTCGAAGGTGGGCATTTAGGATAGGTTCATCCCT
258 ACCGGGTCCGCTTTTATG-CGAAGGTGGGCATTTAGGATAGGTTCATCCCT
* * *
1247945 TTTCTACTCTTTTTAAGTCCTCT-GGTGTACCAAGATACTTTCACGTCGAAGGTATCTCATAAGG
1 TTTCTA-TCTTTTTAAGTCCTTTAGG-GTACCGAGATACTTTCACGTCGAAGGTATCCCATAAGG
* * * *
1248009 GCATTTTCATAATTTTTCTAGAACTAACTCTTAGGTCATCACCGGGTCTGCTTTTATGTTGAAGG
64 GCATTTTCATAATTTTT-TAAAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAA-G
* * *
1248074 GT-GGCATTTAGGATAGGTTCCTCCCTTTTCTAGTGTTTTTAGGTCCTTTAGAGTTGCCGGGGTA
127 GTAGGCATTTAGGATAGGTTCCTCCTTTTTCTAGTCTTTTTAGGTCCTTTAG-GTTGTCGGGGTA
** * * * *
1248138 CTTTTA-GTTTGAAGGCATACCCATAGGGGCATTTTTGTAATTTCTTAGAATCGAGTCCTAGGTT
191 CTTTTACG-TCAAAGGTATACCTATAGGGGCATTTTTGTAATTTTTTAGAATCGAGTCTTAGGTT
* * *
1248202 GTCACCGGGTCCGCTTTTATGACGAAAGTGGGCATTTAGGATAGGTTCATCCTTT
255 ATCACCGGGTCCGCTTTTATG-CGAAGGTGGGCATTTAGGATAGGTTCATCC-CT
* *
1248257 TTTCTAGTCTTTTTAAGTCCTTTAAGGTACCGAGATACTTTCACGTCGAAGGTATCCTATAAGGG
1 TTTCTA-TCTTTTTAAGTCCTTTAGGGTACCGAGATACTTTCACGTCGAAGGTATCCCATAAGGG
* * *
1248322 TATTTTCATAATTTTTTAAAACCAACTCCTAGGTCATCACTGGGTCTGCTTTTATGTCAAAGGT-
65 CATTTTCATAATTTTTTAAAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAGGTA
* ** * * * *
1248386 GTGCATTTACGATAGGTTTATCCTATTTCTAGCCTTTTTAAGTCTTTTAG
130 G-GCATTTAGGATAGGTTCCTCCTTTTTCTAGTCTTTTTAGGTCCTTTAG
1248436 AGGTGTCAAG
Statistics
Matches: 675, Mismatches: 110, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
308 4 0.01
309 147 0.22
310 127 0.19
311 317 0.47
312 79 0.12
313 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (307 bp):
TTTCTATCTTTTTAAGTCCTTTAGGGTACCGAGATACTTTCACGTCGAAGGTATCCCATAAGGGC
ATTTTCATAATTTTTTAAAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAGGTAG
GCATTTAGGATAGGTTCCTCCTTTTTCTAGTCTTTTTAGGTCCTTTAGGTTGTCGGGGTACTTTT
ACGTCAAAGGTATACCTATAGGGGCATTTTTGTAATTTTTTAGAATCGAGTCTTAGGTTATCACC
GGGTCCGCTTTTATGCGAAGGTGGGCATTTAGGATAGGTTCATCCCT
Found at i:1248492 original size:155 final size:154
Alignment explanation
Indices: 1247324--1248493 Score: 999
Period size: 155 Copynumber: 7.5 Consensus size: 154
1247314 AGAATCACCA
* * * * * *
1247324 TTTCTAATCTTTTTACGTCCTTTAG-GGT-TACTGGGATACTTTTACGTTGAAGGTATACCCATA
1 TTTCTAGTCTTTTTAAGTCCTTTAGAGGTGT-C-GAGATACTTTCACGTCGAAGGTAT-CCCTTA
* * * ** * ** * *
1247387 GGGGCATTTTCATAATTTTTCAAAACTGAGTCCTAGGTTGTCACCGTGTCCGCTTTTATGTCGAA
63 -GGGCTTTTTCATAATTTTTTAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAA
* *
1247452 GGTAGGTATTTAGGATAGGTTCA-CCATT
127 GGTGGGCATTTAGGATAGGTTCATCC-TT
* * * *
1247480 TTTATAGTCTTTTTAAGTCCTTTA-AGGTTGTCGAGATACTTTCACGCCAAAGATATCCCTTAGG
1 TTTCTAGTCTTTTTAAGTCCTTTAGAGG-TGTCGAGATACTTTCACGTCGAAGGTATCCCTTAGG
* * * * *
1247544 AGCATTTTT-GTAATTTTCTAGAACCAACTCTTAGGTCATCACCGGGTCCGCTTTCATG-CTGAA
65 -GC-TTTTTCATAATTTTTTAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTC-GAA
* **
1247607 GGTGGGCATTTAAGATAGGTTCATCCCA
127 GGTGGGCATTTAGGATAGGTTCATCCTT
* * * * *
1247635 TTTCTA-TCCTTTTTAAGTCTTTTAGAGGTATCGGGATACTTTTACGTCGAAGGTACCCCTTAGG
1 TTTCTAGT-CTTTTTAAGTCCTTTAGAGGTGTCGAGATACTTTCACGTCGAAGGTATCCCTTAGG
* ** * * ** *
1247699 GGTATTTTTGTAA-TTTTTAAAACCAACTTCTAGGTCATCACTAGGTCTGCTTTTATGCCGAAGG
65 GCT-TTTTCATAATTTTTTAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAGG
*
1247763 TGGGCATTTATGATAGGTTCATCCTT
129 TGGGCATTTAGGATAGGTTCATCCTT
* * * * * * *
1247789 TTTCTAGTCTTTTTAGGTCCTTTAG-GCTTGTCGGGGTACTTTTACGTCAAAGGTATACCTATAG
1 TTTCTAGTCTTTTTAAGTCCTTTAGAG-GTGTCGAGATACTTTCACGTCGAAGGTATCCCT-TA-
* * * * * * * * *
1247853 GGGCATTTTCGTAATTTTTTAGAATCGAGTCTTAGGTTATCACTGGGTCTACTTTTATGTCGAAG
63 GGGCTTTTTCATAATTTTTTAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAG
*
1247918 GTGGGCATTTAGGATAGGTTCATCCCT
128 GTGGGCATTTAGGATAGGTTCATCCTT
* * * * *
1247945 TTTCTACTCTTTTTAAGTCCTCT---GGTGTACCAAGATACTTTCACGTCGAAGGTATCTCATAA
1 TTTCTAGTCTTTTTAAGTCCTTTAGAGGTGT--CGAGATACTTTCACGTCGAAGGTATC-CCTTA
* * * *
1248007 GGGCATTTTCATAATTTTTCTAGAACTAACTCTTAGGTCATCACCGGGTCTGCTTTTATGTTGAA
63 GGGCTTTTTCATAATTTTT-TAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAA
* *
1248072 GG-GTGGCATTTAGGATAGGTTCCTCCCT
127 GGTG-GGCATTTAGGATAGGTTCATCCTT
* * * * * * * * * *
1248100 TTTCTAGTGTTTTTAGGTCCTTTAGAGTTGCCGGGGTACTTTTA-GTTTGAAGGCATACCCATAG
1 TTTCTAGTCTTTTTAAGTCCTTTAGAGGTGTCGAGATACTTTCACG-TCGAAGGTAT-CCCTTA-
* * * * * ** * *
1248164 GGGCATTTTT-GTAATTTCTTAGAATCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATGACGAA
63 GGGC-TTTTTCATAATTTTTTAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAA
*
1248228 AGTGGGCATTTAGGATAGGTTCATCCTTT
127 GGTGGGCATTTAGGATAGGTTCATCC-TT
**
1248257 TTTCTAGTCTTTTTAAGTCCTTTA-AGGTACCGAGATACTTTCACGTCGAAGGTAT-CCTATAAG
1 TTTCTAGTCTTTTTAAGTCCTTTAGAGGTGTCGAGATACTTTCACGTCGAAGGTATCCCT-T-AG
* * *
1248320 GG-TATTTTCATAATTTTTTAAAACCAACTCCTAGGTCATCACTGGGTCTGCTTTTATGTCAAAG
64 GGCT-TTTTCATAATTTTTTAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAG
* * * *
1248384 GTGTGCATTTACGATAGGTTTATCCTA
128 GTGGGCATTTAGGATAGGTTCATCCTT
* * * * *
1248411 TTTCTAGCCTTTTTAAGTCTTTTAGAGGTGTCAAGATACTTTCATGTCGAAGGTATCCTTTAGCG
1 TTTCTAGTCTTTTTAAGTCCTTTAGAGGTGTCGAGATACTTTCACGTCGAAGGTATCCCTTAG-G
*
1248476 GCTTTTTCTTAATTTTTT
65 GCTTTTTCATAATTTTTT
1248494 TTGAACTTAG
Statistics
Matches: 814, Mismatches: 160, Indels: 81
0.77 0.15 0.08
Matches are distributed among these distances:
153 6 0.01
154 172 0.21
155 347 0.43
156 242 0.30
157 39 0.05
158 8 0.01
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (154 bp):
TTTCTAGTCTTTTTAAGTCCTTTAGAGGTGTCGAGATACTTTCACGTCGAAGGTATCCCTTAGGG
CTTTTTCATAATTTTTTAGAACCAACTCCTAGGTCATCACCGGGTCTGCTTTTATGTCGAAGGTG
GGCATTTAGGATAGGTTCATCCTT
Found at i:1254472 original size:13 final size:13
Alignment explanation
Indices: 1254454--1254537 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
1254444 AGCTTCATAG
1254454 CGATACATTGTAT
1 CGATACATTGTAT
1254467 CGATACAACACTTATGTAT
1 CGAT---ACA-TT--GTAT
1254486 CGATACATTGTAT
1 CGATACATTGTAT
1254499 CGATACAACACTTATGTAT
1 CGAT---ACA--T-TGTAT
1254518 CGATACATTGTAT
1 CGATACATTGTAT
1254531 CGATACA
1 CGATACA
1254538 ACACTTATGC
Statistics
Matches: 59, Mismatches: 0, Indels: 24
0.71 0.00 0.29
Matches are distributed among these distances:
13 24 0.41
14 1 0.02
15 2 0.03
16 12 0.20
17 2 0.03
18 1 0.02
19 17 0.29
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1254486 original size:19 final size:19
Alignment explanation
Indices: 1254462--1254556 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
1254452 AGCGATACAT
1254462 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1254481 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
1254494 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1254513 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
1254526 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
1254545 TGCATCGATACA
1 TGTATCGATACA
1254557 TTGTATTGAT
Statistics
Matches: 63, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 18 0.29
14 2 0.03
16 12 0.19
18 2 0.03
19 29 0.46
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1254495 original size:32 final size:32
Alignment explanation
Indices: 1254454--1254620 Score: 280
Period size: 32 Copynumber: 5.2 Consensus size: 32
1254444 AGCTTCATAG
*
1254454 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGCAT
*
1254486 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGCAT
1254518 CGATACATTGTATCGATACAACACTTATGCAT
1 CGATACATTGTATCGATACAACACTTATGCAT
*
1254550 CGATACATTGTATTGATACAACACTTATGCAT
1 CGATACATTGTATCGATACAACACTTATGCAT
* *
1254582 CGATGCATTGTATCGATACAATACTTATGCAT
1 CGATACATTGTATCGATACAACACTTATGCAT
*
1254614 TGATACA
1 CGATACA
1254621 ATTACTGTTT
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 128 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGCAT
Found at i:1255969 original size:8 final size:8
Alignment explanation
Indices: 1255956--1255981 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
1255946 GCACATGAAT
1255956 GACATCAA
1 GACATCAA
1255964 GACATCAA
1 GACATCAA
1255972 GACATCAA
1 GACATCAA
1255980 GA
1 GA
1255982 TAATCCTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.23, G:0.15, T:0.12
Consensus pattern (8 bp):
GACATCAA
Found at i:1258232 original size:52 final size:52
Alignment explanation
Indices: 1258173--1258324 Score: 171
Period size: 52 Copynumber: 2.9 Consensus size: 52
1258163 TAGAAAAAAT
* ** * **
1258173 AAAGGTGCCAATACGTTGATTCATTGCCAGCGATATC-AGACTTAAAAATGTT
1 AAAGGTGCCAATATGTTGATTCAAGGCCAGCAATATCGA-ACTTAAAAATGAC
* * *
1258225 AAGGGTGCCAATATGCTGATTCAAGGCCAGCAATATCGAACTTAAAGATGAC
1 AAAGGTGCCAATATGTTGATTCAAGGCCAGCAATATCGAACTTAAAAATGAC
* * * *
1258277 AAAGGTGTCAATATGTTGATTCAAGGCCACCAATATTGGACTTAAAAA
1 AAAGGTGCCAATATGTTGATTCAAGGCCAGCAATATCGAACTTAAAAA
1258325 AAGAAGAATT
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
52 82 0.99
53 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (52 bp):
AAAGGTGCCAATATGTTGATTCAAGGCCAGCAATATCGAACTTAAAAATGAC
Found at i:1258435 original size:32 final size:32
Alignment explanation
Indices: 1258394--1258584 Score: 235
Period size: 32 Copynumber: 6.0 Consensus size: 32
1258384 AAATGCTACC
* * *
1258394 GACTTGTGTGCGATTTTGAAAGGGTTGCCACT
1 GACTTGTGTGGGCTTTAGAAAGGGTTGCCACT
* *
1258426 GACTAGTGTGGGCTTTAGAAAGGGTTGCCAAT
1 GACTTGTGTGGGCTTTAGAAAGGGTTGCCACT
* *
1258458 GACTTGTGTGGGCTTTAAAAAAGGTTGCCACT
1 GACTTGTGTGGGCTTTAGAAAGGGTTGCCACT
* *
1258490 GACTTGTGTGGGCTTT-GAAAAAGGTTGCCACC
1 GACTTGTGTGGGCTTTAG-AAAGGGTTGCCACT
*
1258522 GACATGTGTGGGCTTTAGAAAGGGTTGCCA-T
1 GACTTGTGTGGGCTTTAGAAAGGGTTGCCACT
*
1258553 CGACTTGTGTGGGCTCTAGAAAGGAG-TGCCAC
1 -GACTTGTGTGGGCTTTAGAAAGG-GTTGCCAC
1258585 GAAGTTGTGC
Statistics
Matches: 138, Mismatches: 16, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
32 136 0.99
33 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.29
Consensus pattern (32 bp):
GACTTGTGTGGGCTTTAGAAAGGGTTGCCACT
Found at i:1258558 original size:96 final size:96
Alignment explanation
Indices: 1258394--1258642 Score: 266
Period size: 96 Copynumber: 2.6 Consensus size: 96
1258384 AAATGCTACC
* * *
1258394 GACTTGTGTGCGATTTTGAAAGGGTTGCCACTGACTAGTGTGGGCTTTAGAAAGGGTTGCCAATG
1 GACTTGTGTGCGACTTTGAAAAGGTTGCCACCGACTAGTGTGGGCTTTAGAAAGGGTTGCCAATG
1258459 ACTTGTGTGGGCTTTAAAAAAGGTTGCCACT
66 ACTTGTGTGGGCTTTAAAAAAGGTTGCCACT
*
1258490 GACTTGTGTG-GGCTTTGAAAAAGGTTGCCACCGAC-ATGTGTGGGCTTTAGAAAGGGTTGCC-A
1 GACTTGTGTGCGACTTTG-AAAAGGTTGCCACCGACTA-GTGTGGGCTTTAGAAAGGGTTGCCAA
* * *
1258552 TCGACTTGTGTGGGCTCT-AGAAAGGAGTGCCAC-
64 T-GACTTGTGTGGGCTTTAAAAAAGG-TTGCCACT
** * * * *
1258585 GAAGT-TGTGCG-CTTTGAAAAGGAGTGCCACAGAGT--TGTGGGCTTTAAAAAGGG-TGCCA
1 GACTTGTGTGCGACTTTGAAAAGG-TTGCCACCGACTAGTGTGGGCTTTAGAAAGGGTTGCCA
1258643 CGGAGTTGCA
Statistics
Matches: 132, Mismatches: 13, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
91 4 0.03
92 17 0.13
93 6 0.05
94 17 0.13
95 18 0.14
96 70 0.53
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.28
Consensus pattern (96 bp):
GACTTGTGTGCGACTTTGAAAAGGTTGCCACCGACTAGTGTGGGCTTTAGAAAGGGTTGCCAATG
ACTTGTGTGGGCTTTAAAAAAGGTTGCCACT
Found at i:1258583 original size:64 final size:63
Alignment explanation
Indices: 1258391--1258643 Score: 241
Period size: 64 Copynumber: 4.0 Consensus size: 63
1258381 AGAAAATGCT
* * * *
1258391 ACCGACTTGTGTGCGATTTTGAAAGGGTTGCCACTGACTAGTGTGGGCTTTAGAAAGGGTTGCC
1 ACCGACTTGTGTGGGCTTTAGAAAGGGTTGCCACTGACTTGTGTGGGCTTTAGAAAGGG-TGCC
** * * * *
1258455 AATGACTTGTGTGGGCTTTAAAAAAGGTTGCCACTGACTTGTGTGGGCTTTGAAAAAGGTTGCC
1 ACCGACTTGTGTGGGCTTTAGAAAGGGTTGCCACTGACTTGTGTGGGCTTT-AGAAAGGGTGCC
* *
1258519 ACCGACATGTGTGGGCTTTAGAAAGGGTTGCCA-TCGACTTGTGTGGGCTCTAGAAAGGAGTGCC
1 ACCGACTTGTGTGGGCTTTAGAAAGGGTTGCCACT-GACTTGTGTGGGCTTTAGAAAGG-GTGCC
** * * * *
1258583 A-CGAAGT-TGTGCGCTTT-GAAAAGGAG-TGCCACAGA-GT-TGTGGGCTTTAAAAAGGGTGCC
1 ACCGACTTGTGTGGGCTTTAG-AAAGG-GTTGCCACTGACTTGTGTGGGCTTTAGAAAGGGTGCC
1258642 AC
1 AC
1258644 GGAGTTGCAG
Statistics
Matches: 157, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
59 6 0.04
60 15 0.10
61 2 0.01
62 21 0.13
63 12 0.08
64 95 0.61
65 6 0.04
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (63 bp):
ACCGACTTGTGTGGGCTTTAGAAAGGGTTGCCACTGACTTGTGTGGGCTTTAGAAAGGGTGCC
Found at i:1258593 original size:32 final size:30
Alignment explanation
Indices: 1258431--1258726 Score: 169
Period size: 32 Copynumber: 9.7 Consensus size: 30
1258421 CCACTGACTA
* **
1258431 GTGTGGGCTTTAGAAAGGGTTGCCAATGACTT
1 GTGTGGGCTTTAGAAAGGG-TGCC-ACGAAGT
* * **
1258463 GTGTGGGCTTTAAAAAAGGTTGCCACTGACTT
1 GTGTGGGCTTT-AGAAAGGGTGCCAC-GAAGT
* *
1258495 GTGTGGGCTTTGAAAAAGGTTGCCACCGACA-T
1 GTGTGGGCTTT-AGAAAGGGTGCCA-CGA-AGT
**
1258527 GTGTGGGCTTTAGAAAGGGTTGCCATCGACTT
1 GTGTGGGCTTTAGAAAGGG-TGCCA-CGAAGT
*
1258559 GTGTGGGCTCTAGAAAGGAGTGCCACGAAGT
1 GTGTGGGCTTTAGAAAGG-GTGCCACGAAGT
*
1258590 -TGTGCGCTTT-GAAAAGGAGTGCCAC-AGAGT
1 GTGTGGGCTTTAG-AAAGG-GTGCCACGA-AGT
* *
1258620 -TGTGGGCTTTAAAAAGGGTGCCACGGAGT
1 GTGTGGGCTTTAGAAAGGGTGCCACGAAGT
** * ** *
1258649 -TGCAGGCTTTAAAAAAAAGTGCCACGGAGT
1 GTGTGGGCTTT-AGAAAGGGTGCCACGAAGT
* * *
1258679 -TGTGGACTTTAAAAAGGGTGCCACAAAGT
1 GTGTGGGCTTTAGAAAGGGTGCCACGAAGT
* *
1258708 -TGTAGACTTTA-AAAGGGTG
1 GTGTGGGCTTTAGAAAGGGTG
1258727 GCATGGAGAT
Statistics
Matches: 223, Mismatches: 29, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
28 8 0.04
29 45 0.20
30 62 0.28
31 11 0.05
32 89 0.40
33 8 0.04
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (30 bp):
GTGTGGGCTTTAGAAAGGGTGCCACGAAGT
Found at i:1258643 original size:29 final size:29
Alignment explanation
Indices: 1258572--1258965 Score: 321
Period size: 29 Copynumber: 13.4 Consensus size: 29
1258562 TGGGCTCTAG
* *
1258572 AAAGGAGTGCCACGAAGTTGTGCG-CTTTGA
1 AAAGG-GTGCCACGGAGTTGTG-GACTTTAA
* *
1258602 AAAGGAGTGCCACAGAGTTGTGGGCTTTAA
1 AAAGG-GTGCCACGGAGTTGTGGACTTTAA
*
1258632 AAAGGGTGCCACGGAGTTGCAGG-CTTTAAA
1 AAAGGGTGCCACGGAGTTG-TGGACTTT-AA
**
1258662 AAAAAGTGCCACGGAGTTGTGGACTTTAA
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
** *
1258691 AAAGGGTGCCACAAAGTTGTAGACTTT-A
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
* * *
1258719 AAAGGGTGGCATGGAGATGTGGAC-TTAA
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
* * * * *
1258747 AAATGGTGCTATGGAGTTGTAGACTTAAA
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
* * * *
1258776 AAAAGGTACCATGGAGTTATGGACTTT-A
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
* *
1258804 AAAGGGTGGCACGAAGTTGTGGACTTTAA
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
* ** * *
1258833 AAGGGGTGCCACAAAGTTGTGGAATTAAA
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
*
1258862 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA
1 AAAGGGTGCCACGGAGTTGTGGACTTT--AA
* * *
1258893 AAAAGGTGCCATGAAGTTGTGGACTTTAAAAA
1 AAAGGGTGCCACGGAGTTGTGGACTTT---AA
** * *
1258925 AAAATGTGCCACGAAGTTGTGGATTTTAA
1 AAAGGGTGCCACGGAGTTGTGGACTTTAA
*
1258954 AAGGGGTGCCAC
1 AAAGGGTGCCAC
1258966 TAAGTCATAG
Statistics
Matches: 296, Mismatches: 58, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
27 2 0.01
28 61 0.21
29 125 0.42
30 55 0.19
31 25 0.08
32 28 0.09
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.24
Consensus pattern (29 bp):
AAAGGGTGCCACGGAGTTGTGGACTTTAA
Found at i:1258799 original size:57 final size:57
Alignment explanation
Indices: 1258616--1258924 Score: 278
Period size: 57 Copynumber: 5.3 Consensus size: 57
1258606 GAGTGCCACA
* * * * *
1258616 GAGTTGTGGGCTTTAAAAAGGGTGCCACGGAGTTGCAGGCTTTAAAAAAAAGTGCCACG
1 GAGTTGTGGAC-TTAAAAAGGGTGCCACGGAGTTGTAGAC-TTAAAAAAAGGTGCCATG
** * * *
1258675 GAGTTGTGGACTTTAAAAAGGGTGCCACAAAGTTGTAGACTT-TAAAAGGGTGGCATG
1 GAGTTGTGGAC-TTAAAAAGGGTGCCACGGAGTTGTAGACTTAAAAAAAGGTGCCATG
* * * * *
1258732 GAGATGTGGACTTAAAAATGGTGCTATGGAGTTGTAGACTTAAAAAAAGGTACCATG
1 GAGTTGTGGACTTAAAAAGGGTGCCACGGAGTTGTAGACTTAAAAAAAGGTGCCATG
* * * * * * ** **
1258789 GAGTTATGGACTTTAAAAGGGTGGCACGAAGTTGTGGACTTTAAAAGGGGTGCCACA
1 GAGTTGTGGACTTAAAAAGGGTGCCACGGAGTTGTAGACTTAAAAAAAGGTGCCATG
* * * *
1258846 AAGTTGTGGAATTAAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAAAAAGGTGCCATG
1 GAGTTGTGGACTT-AAAAAGGGTGCCACGGAGTTGTAGAC-TT-AAAAAAAGGTGCCATG
*
1258906 AAGTTGTGGACTTTAAAAA
1 GAGTTGTGGAC-TTAAAAA
1258925 AAAATGTGCC
Statistics
Matches: 197, Mismatches: 48, Indels: 9
0.78 0.19 0.04
Matches are distributed among these distances:
56 25 0.13
57 83 0.42
58 24 0.12
59 37 0.19
60 26 0.13
61 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (57 bp):
GAGTTGTGGACTTAAAAAGGGTGCCACGGAGTTGTAGACTTAAAAAAAGGTGCCATG
Found at i:1258988 original size:121 final size:116
Alignment explanation
Indices: 1258578--1258994 Score: 290
Period size: 114 Copynumber: 3.6 Consensus size: 116
1258568 CTAGAAAGGA
* * ** * ** * *
1258578 GTGCCACGAAGTTGTGCG-CTTTGAAAAGGAGTGCCACAGAGTTGTGGGCTTTAAAAAG-GGTGC
1 GTGCCACGAAGTTGTG-GACTTT-AAAAGGGGTGCCACAAAGTCATAGAATTAAAAAAGAGATGC
* * * * * * *
1258641 CACGGAGTTGCAGGCTTTAAAAAAAAGTGCCACGGAGTTGTGGACTTTAAAAAGG
64 CACGGAGTTGTAGAC-TTAAAAAAAGGTACCATGAAGTTATGGACTTTAAAAA-G
* * * *** * * * * *
1258696 GTGCCACAAAGTTGTAGACTTTAAAA-GGGTGGCATGGAGAT-GTGGACTTAAAAATG-G-TGCT
1 GTGCCACGAAGTTGTGGACTTTAAAAGGGGTGCCACAAAG-TCATAGAATTAAAAAAGAGATGCC
* * *
1258757 ATGGAGTTGTAGACTTAAAAAAAGGTACCATGGAGTTATGGACTTTAAAAGG
65 ACGGAGTTGTAGACTTAAAAAAAGGTACCATGAAGTTATGGACTTTAAAAAG
* ** *
1258809 GTGGCACGAAGTTGTGGACTTTAAAAGGGGTGCCACAAAGTTGTGGAATTAAAAAAGAG-TGCCA
1 GTGCCACGAAGTTGTGGACTTTAAAAGGGGTGCCACAAAGTCATAGAATTAAAAAAGAGATGCCA
* * * *
1258873 CGGAGTTGTGGACTTTAAAAAAAAGGTGCCATGAAGTTGTGGACTTTAAAAAAAAAT
66 CGGAGTTGTAGAC-TT-AAAAAAAGGTACCATGAAGTTATGGACTTT----AAAAAG
* * * ** *
1258930 GTGCCACGAAGTTGTGGATTTTAAAAGGGGTGCCACTAAGTCATAGACTTTGAGAAGAGATGCCA
1 GTGCCACGAAGTTGTGGACTTTAAAAGGGGTGCCACAAAGTCATAGAATTAAAAAAGAGATGCCA
1258995 TTGAGTCGTA
Statistics
Matches: 242, Mismatches: 45, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
113 25 0.10
114 54 0.22
115 30 0.12
116 24 0.10
117 33 0.14
118 18 0.07
121 53 0.22
122 5 0.02
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.24
Consensus pattern (116 bp):
GTGCCACGAAGTTGTGGACTTTAAAAGGGGTGCCACAAAGTCATAGAATTAAAAAAGAGATGCCA
CGGAGTTGTAGACTTAAAAAAAGGTACCATGAAGTTATGGACTTTAAAAAG
Found at i:1260311 original size:155 final size:155
Alignment explanation
Indices: 1259995--1260441 Score: 478
Period size: 154 Copynumber: 2.9 Consensus size: 155
1259985 TAGTTCTGGG
* * ** * * * * * *
1259995 AAAATTACTAAAATGCCCCTATAGTATACCTTT-GACCTAAAAATACTCGATACCCATAAAGGAA
1 AAAATTACAAAAATGCCTCTAGGGGATA-CTTTCGACATAAAAGTACTAGATACCCCTAAAGGAC
* ** * *
1260059 TTAAAAAGGA-TATAGATGGGATGAACCTATCCCCAATACGCACCTTCAGCATAAAAGCGAACCC
65 TTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGAACCC
1260123 GGTAACAACTCAGGACTCGACTTTAA
130 GGTAACAACTCAGGACTCGACTTTAA
*
1260149 AAAATTACAAAAATGTCC-CTAGGGGATACTTTCGACATAAAAGTACTTGATACCCCTAAAGGAC
1 AAAATTACAAAAATG-CCTCTAGGGGATACTTTCGACATAAAAGTACTAGATACCCCTAAAGGAC
* * *
1260213 TTAAAAAGGATTATA-AGTAAGATGAACCTATCCTAAATGCCCACCTTCGGCATAAAATCGAACC
65 TTAAAAAGGATTATAGA-TGAGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGAACC
* * * *
1260277 CGTTGACGAC-CTAGGACAT-G-TTTCTAA
129 CGGTAACAACTC-AGGAC-TCGACTT-TAA
* * * * * * *
1260304 AATATTACAAAAATGCCTTTAGGGGATACCTTCAACATAAAAGTACCAAATACCCCTAAATGAC-
1 AAAATTACAAAAATGCCTCTAGGGGATACTTTCGACATAAAAGTACTAGATACCCCTAAAGGACT
* * * *
1260368 TAAAAAGGATTGTAGATGAGATAAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGGACTCG
66 TAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGAACCCG
1260433 GTAACAACT
131 GTAACAACT
1260442 TAGTAGTCAT
Statistics
Matches: 244, Mismatches: 39, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
153 4 0.02
154 124 0.51
155 115 0.47
156 1 0.00
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (155 bp):
AAAATTACAAAAATGCCTCTAGGGGATACTTTCGACATAAAAGTACTAGATACCCCTAAAGGACT
TAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCGAACCCG
GTAACAACTCAGGACTCGACTTTAA
Found at i:1260461 original size:155 final size:154
Alignment explanation
Indices: 1260044--1260461 Score: 452
Period size: 155 Copynumber: 2.7 Consensus size: 154
1260034 AAAATACTCG
* * * ** * *
1260044 ATACCCATAAAGGAATTAAAAAGGA-TATAGATGGGATGAACCTATCCCCAATACGCACCTTCAG
1 ATACCCCTAAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGG
* * * *
1260108 CATAAAAGCGAACCCGGTAACAACTCAGGACTCGACTT-TAAAAAATTACAAAAATGTCCCTAGG
66 CATAAAAGCGAACCCGGTAACAACTTA-GAGTC-ATTTCTAAAATATTACAAAAATGTCCCTAGG
* * ***
1260172 GGATACTTTCGACATAAAAGTACTTG
129 GGATACCTTCAACATAAAAGTACCAA
* *
1260198 ATACCCCTAAAGGACTTAAAAAGGATTATA-AGTAAGATGAACCTATCCTAAATGCCCACCTTCG
1 ATACCCCTAAAGGACTTAAAAAGGATTATAGA-TGAGATGAACCTATCCTAAATACCCACCTTCG
* * * * * * *
1260262 GCATAAAATCGAACCCGTTGACGACCTAG-GACATGTTTCTAAAATATTACAAAAATG-CCTTTA
65 GCATAAAAGCGAACCCGGTAACAACTTAGAGTCA--TTTCTAAAATATTACAAAAATGTCC-CTA
1260325 GGGGATACCTTCAACATAAAAGTACCAA
127 GGGGATACCTTCAACATAAAAGTACCAA
* * *
1260353 ATACCCCTAAATGAC-TAAAAAGGATTGTAGATGAGATAAACCTATCCTAAATACCCACCTTCGG
1 ATACCCCTAAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGG
* *
1260417 CATAAAAGCGGACTCGGTAACAACTTAGTAGTCATTTCTGAAAAT
66 CATAAAAGCGAACCCGGTAACAACTTAG-AGTCATTTCT-AAAAT
1260462 TATGAAAATG
Statistics
Matches: 216, Mismatches: 38, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
152 1 0.00
153 1 0.00
154 98 0.45
155 113 0.52
156 3 0.01
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (154 bp):
ATACCCCTAAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGG
CATAAAAGCGAACCCGGTAACAACTTAGAGTCATTTCTAAAATATTACAAAAATGTCCCTAGGGG
ATACCTTCAACATAAAAGTACCAA
Found at i:1260501 original size:154 final size:154
Alignment explanation
Indices: 1260044--1260502 Score: 448
Period size: 154 Copynumber: 3.0 Consensus size: 154
1260034 AAAATACTCG
* * * ** * *
1260044 ATACCCATAAAGGAATTAAAAAGGA-TATAGATGGGATGAACCTATCCCCAATACGCACCTTCAG
1 ATACCCCTAAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGG
* * * *
1260108 CATAAAAGCGAACCCGGTAACAACTCAGGACTCGACTTT-AAAAAATTACAAAAATG-TCCCTAG
66 CATAAAAGCGAACCCGGTAACAACTTA-GAGTC-ACTTTCTAAAAATTACAAAAATGCT-TCTAG
***
1260171 GGGATACTTTCGACATAAAAGTACTTG
128 GGGATACTTTCGACATAAAAGTACCAA
* *
1260198 ATACCCCTAAAGGACTTAAAAAGGATTATA-AGTAAGATGAACCTATCCTAAATGCCCACCTTCG
1 ATACCCCTAAAGGACTTAAAAAGGATTATAGA-TGAGATGAACCTATCCTAAATACCCACCTTCG
* * * * * * *
1260262 GCATAAAATCGAACCCGTTGACGACCTAG-GACATGTTTCTAAAATATTACAAAAATGCCTT-TA
65 GCATAAAAGCGAACCCGGTAACAACTTAGAGTCA-CTTTCTAAAA-ATTACAAAAATG-CTTCTA
* *
1260325 GGGGATACCTTCAACATAAAAGTACCAA
127 GGGGATACTTTCGACATAAAAGTACCAA
* * *
1260353 ATACCCCTAAATGAC-TAAAAAGGATTGTAGATGAGATAAACCTATCCTAAATACCCACCTTCGG
1 ATACCCCTAAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGG
* * * ** *
1260417 CATAAAAGCGGACTCGGTAACAACTTAGTAGTCA-TTTCTGAAAATTATGAAAATGCTTCTATGA
66 CATAAAAGCGAACCCGGTAACAACTTAG-AGTCACTTTCTAAAAATTACAAAAATGCTTCTA-GG
* * *
1260481 GTATACTTTTGACATGAAAGTA
129 GGATACTTTCGACATAAAAGTA
1260503 TCTCGATAAC
Statistics
Matches: 246, Mismatches: 47, Indels: 24
0.78 0.15 0.08
Matches are distributed among these distances:
152 4 0.02
153 16 0.07
154 119 0.48
155 103 0.42
156 3 0.01
157 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (154 bp):
ATACCCCTAAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCACCTTCGG
CATAAAAGCGAACCCGGTAACAACTTAGAGTCACTTTCTAAAAATTACAAAAATGCTTCTAGGGG
ATACTTTCGACATAAAAGTACCAA
Found at i:1261998 original size:21 final size:21
Alignment explanation
Indices: 1261965--1262005 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1261955 CTAAGTAAAA
1261965 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
1261986 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
1262006 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:1262176 original size:53 final size:53
Alignment explanation
Indices: 1262085--1262221 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
1262075 ATAATGCATA
* *
1262085 GTATTGATACACACAAATATGTATCGATACAGGACATTGGTAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
1262139 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
1262192 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
1262222 TTGGTAGTAG
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:1262297 original size:21 final size:22
Alignment explanation
Indices: 1262263--1262323 Score: 106
Period size: 21 Copynumber: 2.8 Consensus size: 22
1262253 TATCACTATT
1262263 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1262285 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
*
1262306 CATCACTGTTCACGTATC
1 CATCACTGTTCATGTATC
1262324 ATTATTCATG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
21 21 0.57
22 16 0.43
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:1262384 original size:13 final size:13
Alignment explanation
Indices: 1262366--1262391 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1262356 TCACTATTCA
1262366 TGTATCGATACAT
1 TGTATCGATACAT
1262379 TGTATCGATACAT
1 TGTATCGATACAT
1262392 CATAAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1268176 original size:79 final size:79
Alignment explanation
Indices: 1268071--1268277 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 79
1268061 GAGATAATAA
* * * * *
1268071 CGGGGTTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATG
1 CGGGGTTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-
*
1268135 ATTAT-AAAAAAAAAT
64 ATTATGAAAAAAAAAC
* * *
1268150 CGGGATTGGAGTATCCCTTCGAAAATAACGGGGTTAGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
* ** * *
1268215 TTTGGGAATAAAGC
66 TATGAAAAAAAAAC
* * *
1268229 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
1268278 GAAATAATGA
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 10 0.09
79 96 0.91
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TATGAAAAAAAAAC
Found at i:1268291 original size:28 final size:28
Alignment explanation
Indices: 1268232--1268305 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
1268222 ATAAAGCCGG
*** * *
1268232 GGTTGGAGTATCCCCTCGGAAGTAACGG
1 GGTTGGAGTATCCCCGATGAAATAACGA
*
1268260 GGTTGGAGTATCCCCGATGAAATAATGA
1 GGTTGGAGTATCCCCGATGAAATAACGA
*
1268288 GGTTGGAGTATCCTCGAT
1 GGTTGGAGTATCCCCGAT
1268306 TGTGAAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGATGAAATAACGA
Found at i:1268358 original size:52 final size:52
Alignment explanation
Indices: 1268289--1268458 Score: 177
Period size: 52 Copynumber: 3.3 Consensus size: 52
1268279 AAATAATGAG
* *
1268289 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAACCGGA
** * ** *
1268341 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAACC-GGA
* * *
1268394 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAACCGGA
1268445 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
1268459 TCGAAAATAA
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
51 3 0.03
52 77 0.80
53 16 0.17
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAACCGGA
Found at i:1268479 original size:184 final size:182
Alignment explanation
Indices: 1268261--1268598 Score: 527
Period size: 184 Copynumber: 1.8 Consensus size: 182
1268251 AAGTAACGGG
* * *
1268261 GTTGGAGTATCCCCGATGAAATAATGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTT
1 GTTGGAGTATCCCCGA-GAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTT
*
1268326 GGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCA
65 GGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA-GAAAATTAGCGTTTTGAAAATAAAACC-
*
1268391 GGA-TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
128 GGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
*
1268445 GTTGGAGTATCCCCTCGA-AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTT
1 GTTGGAGTAT-CCC-CGAGAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTT
* *
1268509 TGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTGTTTTGAAAATAAAATCG
64 TGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACCG
* *
1268574 GAGTTGGAATATCCTCGATTTTGGA
129 GAGTTGGAATATCCCCGATTGTGGA
1268599 GAATTGATAA
Statistics
Matches: 141, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
182 3 0.02
183 43 0.30
184 89 0.63
185 3 0.02
186 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (182 bp):
GTTGGAGTATCCCCGAGAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTTG
GAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAAACCGGA
GTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
Found at i:1268490 original size:132 final size:131
Alignment explanation
Indices: 1268341--1268587 Score: 302
Period size: 132 Copynumber: 1.9 Consensus size: 131
1268331 TAAAATCGGA
* *
1268341 GTTGGAGTATCCCCGATTAAAGGAAAATT-GGCGTTTTGAAAATAAAACCAGGA-TTGGAGTATC
1 GTTGGAGTATCCCCGATT-AAGAAAAATTAGGAGTTTTGAAAATAAAACC-GGAGTTGGAGTATC
*** ** *
1268404 CCCGATTGTGGAAAAATTAGTGTTTT-AGCGATAAAACCGGAGTTGGAGTATCCCCTCGAAAATA
64 CCCGATTAAAG-AAAATTAGTGTTTTGA-AAATAAAACCGGAGTTGGAATATCCCCTCGAAAATA
1268468 ACGGG
127 ACGGG
** * * * *
1268473 GTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAGAAAAATTAGGAGTTTTGAAAATAAAACCGGAGTTGGAGTATCCC
*
1268538 CGATTAAAGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCC
66 CGATTAAAGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAATATCC
1268588 TCGATTTTGG
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
131 45 0.46
132 52 0.54
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (131 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTAGGAGTTTTGAAAATAAAACCGGAGTTGGAGTATCCC
CGATTAAAGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCTCGAAAATAACGG
G
Found at i:1268587 original size:51 final size:52
Alignment explanation
Indices: 1268473--1268593 Score: 165
Period size: 51 Copynumber: 2.3 Consensus size: 52
1268463 AAATAACGGG
** * *
1268473 GTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAGAAAAATTAGTAGTTTTGAAAATAAAATCGGA
1268525 GTTGGAGTATCCCCGATTAA-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAGA-AAAATTAGTAGTTTTGAAAATAAAATCGGA
* *
1268576 GTTGGAATATCCTCGATT
1 GTTGGAGTATCCCCGATT
1268594 TTGGAGAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
51 35 0.56
52 27 0.44
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTAGTAGTTTTGAAAATAAAATCGGA
Found at i:1270980 original size:13 final size:13
Alignment explanation
Indices: 1270962--1270987 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1270952 ACAAAGATCC
1270962 ATGTATCGATACA
1 ATGTATCGATACA
1270975 ATGTATCGATACA
1 ATGTATCGATACA
1270988 CAAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1271051 original size:19 final size:18
Alignment explanation
Indices: 1271027--1271094 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1271017 CAGTAGCTAA
1271027 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1271046 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1271061 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1271078 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1271095 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1271067 original size:13 final size:13
Alignment explanation
Indices: 1271049--1271073 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1271039 ACAATACTTA
1271049 TGTATCGATACAT
1 TGTATCGATACAT
1271062 TGTATCGATACA
1 TGTATCGATACA
1271074 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1271071 original size:32 final size:32
Alignment explanation
Indices: 1271030--1271092 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1271020 TAGCTAATTA
*
1271030 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1271062 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1271093 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1278344 original size:61 final size:61
Alignment explanation
Indices: 1278240--1278918 Score: 541
Period size: 61 Copynumber: 11.0 Consensus size: 61
1278230 AACCTTTTAT
* *
1278240 CCTTTTAGTCCTCAAAGAGTAGGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
1278300 CCTTCTAGTCCTCAAAAAGCATGACGCCTTCTCTTTTTAAAGCCCATACAAGTTGGTTGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * *
1278361 TCTTTTAGGCCTCAAAG-G-A-TA--CCTTCTCCTTTCAAAGTCTACAGAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * * * * *
1278417 CCTTCTAGCCCTTAAAGAGTAGGATGGCATATCC-TTTAAAGCCCAAACAGGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
1278477 CCTTTTCGTCTTCAAAGAGAAGGACACCTTCTCCTTTCAAAGCCCACACAAGTTGATGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * *
1278538 CTTTTTAGTCCTCAAAGAGCAGGATGTCTTCTCCTTTCAAAGCCTACATAGGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
1278599 CCTTTCT-GTCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGTCCACATAAGTTGGTGGCA
1 CCTTT-TAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
1278660 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAATTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * * *
1278721 CTTTTTAGTCCTCAAAGAACAAGACACCTT-TTCTTTTCAAA-CCTACATAAGTTGGTGGTA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
* * * * * * * * * *
1278781 CTTTTTAGTCCTCGAAGAGTAGGACACTTCCTTTTTTCTTGTAAAAGTCCACACAAGCTGGTAGC
1 CCTTTTAGTCCTCAAAGAGCAGG--AC-GCC-TTCTCCTT-TTAAAGCCCACACAAGTTGGTGGC
1278846 A
61 A
* * * * *
1278847 CCTTTTAGTCCTTAAAAAGTAGGATGCCTTTCTCTTTTTCTATCTCAAAGCCCACACAAGTTGGT
1 CCTTTTAGTCCTCAAAGAGCAGGACGCC-TTCTC-----CT-T-TTAAAGCCCACACAAGTTGGT
1278912 GGCA
58 GGCA
1278916 CCT
1 CCT
1278919 ATCTACTTCA
Statistics
Matches: 485, Mismatches: 111, Indels: 37
0.77 0.18 0.06
Matches are distributed among these distances:
56 41 0.08
57 1 0.00
58 2 0.00
59 2 0.00
60 104 0.21
61 253 0.52
62 3 0.01
63 8 0.02
64 3 0.01
65 8 0.02
66 33 0.07
68 2 0.00
69 25 0.05
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (61 bp):
CCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:1280399 original size:8 final size:8
Alignment explanation
Indices: 1280386--1280410 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
1280376 CTAGCACTCC
1280386 CATGCATT
1 CATGCATT
1280394 CATGCATT
1 CATGCATT
1280402 CATGCATT
1 CATGCATT
1280410 C
1 C
1280411 TTGTGGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (8 bp):
CATGCATT
Found at i:1282108 original size:79 final size:79
Alignment explanation
Indices: 1282002--1282221 Score: 214
Period size: 79 Copynumber: 2.8 Consensus size: 79
1281992 CTGAGGGTGT
* * * *
1282002 ACTCCAACCCC-GCTTTTATTTTCAAAATGTCGATGTTTT-ATCATTAGAGATACTCCAACCCTA
1 ACTCCAACCCCAG-TTCTATTTTTAAAATATCGAT-TTTTCATCATCAGAGATACTCCAACCCTA
**
1282065 TTATTTTTGAAGAG-AC
64 TTA-TTTCCAAGAGAAC
* * * * * *
1282081 ACTCGAACCCTAGTTCTATTTTTAAAATATCGATTTTTCATCATCGGGGATACTCTAACCCTGTT
1 ACTCCAACCCCAGTTCTATTTTTAAAATATCGATTTTTCATCATCAGAGATACTCCAACCCTATT
*
1282146 ATTTCCAAGAGAAT
66 ATTTCCAAGAGAAC
* * * * *
1282160 ACTCCAACCCCGGTTCTATTTTTAAAATATCAATTTTCCACCATCA-AGGACACTCCAACCCT
1 ACTCCAACCCCAGTTCTATTTTTAAAATATCGATTTTTCATCATCAGA-GATACTCCAACCCT
1282222 TTTACTTTTG
Statistics
Matches: 114, Mismatches: 23, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
78 12 0.11
79 101 0.89
80 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (79 bp):
ACTCCAACCCCAGTTCTATTTTTAAAATATCGATTTTTCATCATCAGAGATACTCCAACCCTATT
ATTTCCAAGAGAAC
Found at i:1282241 original size:79 final size:78
Alignment explanation
Indices: 1282053--1282247 Score: 210
Period size: 79 Copynumber: 2.5 Consensus size: 78
1282043 CATTAGAGAT
* * * * *
1282053 ACTCCAACCCTATTATTTTTGAAGAGACACTCGAACCCTAGTTCTATTTTTAAAATATCGATTTT
1 ACTCCAACCCTATTA-TTTTGAAGGGATACTCCAACCCCAGTTCTATTTTTAAAATATCAATTTT
* * ** *
1282118 TCATCATCGGGGAT
65 CCACCATCAAGGAC
* * ** * *
1282132 ACTCTAACCCTGTTATTTCCAAGAGAATACTCCAACCCCGGTTCTATTTTTAAAATATCAATTTT
1 ACTCCAACCCTATTATTTTGAAG-GGATACTCCAACCCCAGTTCTATTTTTAAAATATCAATTTT
1282197 CCACCATCAAGGAC
65 CCACCATCAAGGAC
*
1282211 ACTCCAACCCTTTTACTTTTGAAGGGATACTCCAACC
1 ACTCCAACCCTATTA-TTTTGAAGGGATACTCCAACC
1282248 TCGTTATTTT
Statistics
Matches: 93, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
78 6 0.06
79 81 0.87
80 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (78 bp):
ACTCCAACCCTATTATTTTGAAGGGATACTCCAACCCCAGTTCTATTTTTAAAATATCAATTTTC
CACCATCAAGGAC
Found at i:1282324 original size:78 final size:78
Alignment explanation
Indices: 1282236--1282383 Score: 217
Period size: 78 Copynumber: 1.9 Consensus size: 78
1282226 CTTTTGAAGG
* * ** *
1282236 GATACTCCAA-CCTCGTTATTTTCGAGAGGATACTCCAATCCTGGTTTTATTTTAAAATATTGAT
1 GATACTCCAACCCT-ATTATTTTCGAGAGGATACTCCAACCCCAGTTTTATTTTAAAATATCGAT
1282300 TTTCCATCATTGGA
65 TTTCCATCATTGGA
* *
1282314 GATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTTTAAATATCGATT
1 GATACTCCAACCCTATTATTTTCGAGAGGATACTCCAACCCCAGTTTTATTTTAAAATATCGATT
1282379 TTCCA
66 TTCCA
1282384 CCATCGTGAC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 59 0.95
79 3 0.05
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.39
Consensus pattern (78 bp):
GATACTCCAACCCTATTATTTTCGAGAGGATACTCCAACCCCAGTTTTATTTTAAAATATCGATT
TTCCATCATTGGA
Found at i:1282344 original size:106 final size:107
Alignment explanation
Indices: 1282126--1282354 Score: 268
Period size: 106 Copynumber: 2.1 Consensus size: 107
1282116 TTTCATCATC
*
1282126 GGGGATACTCTAACCCTGTTATTTCCAAGAGAATACTCCAACCCCGGTTCTATTTTTAAAATATC
1 GGGGATACTCCAACCCTGTTATTTCCAAGAGAATACTCCAACCCCGGTTCTATTTTTAAAATATC
*
1282191 AATTTTCCACCATCAAGGACACTCCAACCCTTTTACTTTTGA
66 AATTTTCCACCATCAAGGACACTCCAACCCTATTACTTTTGA
* * * * * * *
1282233 AGGGATACTCCAA-CCTCGTTATTTTCGAGAGGATACTCCAATCCTGGTTTTA-TTTTAAAATAT
1 GGGGATACTCCAACCCT-GTTATTTCCAAGAGAATACTCCAACCCCGGTTCTATTTTTAAAATAT
** * ** *
1282296 TGATTTTCCATCAT-TGGAGATACTCCAACCCTATTA-TTTTCGA
65 CAATTTTCCACCATCAAG-GACACTCCAACCCTATTACTTTT-GA
1282339 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
1282355 CAGTTTTATT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
105 5 0.05
106 55 0.54
107 42 0.41
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (107 bp):
GGGGATACTCCAACCCTGTTATTTCCAAGAGAATACTCCAACCCCGGTTCTATTTTTAAAATATC
AATTTTCCACCATCAAGGACACTCCAACCCTATTACTTTTGA
Found at i:1282352 original size:185 final size:183
Alignment explanation
Indices: 1282100--1282571 Score: 574
Period size: 185 Copynumber: 2.6 Consensus size: 183
1282090 CTAGTTCTAT
* * * * * * *
1282100 TTTTAAAATATCGATTTTTCATCATCGGGGATACTCTAACCCTGTTATTTCCAAGAGAATACTCC
1 TTTTAAAATATTGA-TTTTCATCATCGGAGATACTCCAACCCTATTATTTTCAAGGGGATACTCC
* * **
1282165 AACCCCGGTTCTATTTTTAAAATATCAATTTTCCACCATCAAG-GACACTCCAACCCTTTTACTT
65 AACCCCGGTTTTATTTTTAAAATATCGATTTTCCACCATC--GTGACACTCCAACCCCGTTACTT
* * * *
1282229 TTGAAGGGATACTCCAACCTCGTTATTTTCGAGAGGATACTCCAATC-CTGGTTTTA
128 CTGAAGGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAA-CACTGATTTTA
* *
1282285 TTTTAAAATATTGATTTTCCATCATTGGAGATACTCCAACCCTATTATTTTCGAGGGGATACTCC
1 TTTTAAAATATTGATTTT-CATCATCGGAGATACTCCAACCCTATTATTTTCAAGGGGATACTCC
* *
1282350 AACCCCAGTTTTATTTTT-AAATATCGATTTTCCACCATCGTGACACTTCAACCCCGTTACTTCT
65 AACCCCGGTTTTATTTTTAAAATATCGATTTTCCACCATCGTGACACTCCAACCCCGTTACTTCT
** *
1282414 GATTGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACACTGATTTTA
130 GAAGGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACACTGATTTTA
* * * * * *
1282468 TTTTCGAAATATTGACTTTTCACCATCGAAAATACTCC-AGCCTCATTATTTTCAAAGGGATACT
1 TTTT-AAAATATTGA-TTTTCATCATCGGAGATACTCCAACCCT-ATTATTTTCAAGGGGATACT
* *
1282532 TCAACCCCGGTTTTATTTTTAAAATATTGATTTTCCACCA
63 CCAACCCCGGTTTTATTTTTAAAATATCGATTTTCCACCA
1282572 CCGGGGATGT
Statistics
Matches: 247, Mismatches: 33, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
182 2 0.01
183 73 0.30
184 83 0.34
185 89 0.36
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (183 bp):
TTTTAAAATATTGATTTTCATCATCGGAGATACTCCAACCCTATTATTTTCAAGGGGATACTCCA
ACCCCGGTTTTATTTTTAAAATATCGATTTTCCACCATCGTGACACTCCAACCCCGTTACTTCTG
AAGGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACACTGATTTTA
Found at i:1282557 original size:79 final size:79
Alignment explanation
Indices: 1282420--1282913 Score: 229
Period size: 79 Copynumber: 6.3 Consensus size: 79
1282410 TTCTGATTGG
* * * *
1282420 ATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACACTGATTTTATTTTCGAAATATTGACT
1 ATACTCCAACCCCATTATTTTCAAAGGGATACTCCAACACCGATTTTATTTTCAAAATATTGA-T
1282485 TTT-CACCATCGAAA
65 TTTCCACCATCGAAA
* * * * * *
1282499 ATACTCCAGCCTCATTATTTTCAAAGGGATACTTCAACCCCGGTTTTATTTTTAAAATATTGATT
1 ATACTCCAACCCCATTATTTTCAAAGGGATACTCCAACACCGATTTTATTTTCAAAATATTGATT
* ***
1282564 TTCCACCACCGGGG
66 TTCCACCATCGAAA
** * * * * * * *
1282578 ATGTTCTAACTCCGTTATTTT-AGAGACGATACTCCAAC-CTC-AGTTTTATTTTTAAAATATCG
1 ATACTCCAACCCCATTATTTTCAAAG-GGATACTCCAACAC-CGA-TTTTATTTTCAAAATATTG
* **
1282640 ATTTTCCATCATC-AGGG
63 ATTTTCCACCATCGA-AA
* ** * * * * **
1282657 ATATTCCAACCCTGTTATTTTCAAAGGGATACTCTAAC-CTCGGTTCTACTTT-AAAATATCAAT
1 ATACTCCAACCCCATTATTTTCAAAGGGATACTCCAACAC-CGATTTTATTTTCAAAATATTGAT
* **
1282720 TTTCCACCAT-TAGGG
65 TTTCCACCATCGA-AA
* * ** * * * * * * *
1282735 ATACTCTAATCTTATTATTTTCAAGGGGATACCCCAAC-CTCGATTCTATGTTGAAAAAATCGAT
1 ATACTCCAACCCCATTATTTTCAAAGGGATACTCCAACAC-CGATTTTATTTTCAAAATATTGAT
* ***
1282799 TTTCCACCATTGGGG
65 TTTCCACCATCGAAA
* ** * * * *
1282814 ATACTCCAACCCCGTTA-TTTCTGAGGAGATGCTCTAAC-CC-ATGTTTTATTTTTAAAATATCG
1 ATACTCCAACCCCATTATTTTCAAAGG-GATACTCCAACACCGA--TTTTATTTTCAAAATATTG
* ***
1282876 ATTTTTCACCATCGGGG
63 ATTTTCCACCATCGAAA
1282893 ATACTCCAACCCCATTATTTT
1 ATACTCCAACCCCATTATTTT
1282914 TGAGGAGATC
Statistics
Matches: 327, Mismatches: 74, Indels: 27
0.76 0.17 0.06
Matches are distributed among these distances:
77 1 0.00
78 79 0.24
79 241 0.74
80 6 0.02
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (79 bp):
ATACTCCAACCCCATTATTTTCAAAGGGATACTCCAACACCGATTTTATTTTCAAAATATTGATT
TTCCACCATCGAAA
Found at i:1282929 original size:157 final size:158
Alignment explanation
Indices: 1282499--1282930 Score: 430
Period size: 157 Copynumber: 2.7 Consensus size: 158
1282489 ACCATCGAAA
* * * * *
1282499 ATACTCCAGCCTCATTATTTTCAAAGGGATACT-TCAACCCCGGTTTTATTTTTAAAATATTGAT
1 ATACTCCAACCCCGTTATTTTCAAAGGGATACTCT-AACCTCGGTTTTATTTTTAAAATATCGAT
* ** * * *
1282563 TTTCCACCACCGGGGATGTTCTAACTCCGTTATTTTAGA-GACGATACTCCAACCTCAGTTTTAT
65 TTTCCACCATCGGGGATACTCTAACCCCATTATTTTAGAGGA-GATACTCCAACCTCAGTTCTAT
* * * *
1282627 TTTTAAAATATCGATTTTCCATCATCAGGG
129 GTTGAAAAAATCGATTTTCCACCATCAGGG
* * * * *
1282657 ATATTCCAACCCTGTTATTTTCAAAGGGATACTCTAACCTCGGTTCTA-CTTTAAAATATCAATT
1 ATACTCCAACCCCGTTATTTTCAAAGGGATACTCTAACCTCGGTTTTATTTTTAAAATATCGATT
** * ** * *
1282721 TTCCACCATTAGGGATACTCTAATCTTATTATTTTCA-AGGGGATACCCCAACCTC-GATTCTAT
66 TTCCACCATCGGGGATACTCTAACCCCATTATTTT-AGAGGAGATACTCCAACCTCAG-TTCTAT
**
1282784 GTTGAAAAAATCGATTTTCCACCATTGGGG
129 GTTGAAAAAATCGATTTTCCACCATCAGGG
** * *
1282814 ATACTCCAACCCCGTTA-TTTCTGAGGAGATGCTCTAACC-CATGTTTTATTTTTAAAATATCGA
1 ATACTCCAACCCCGTTATTTTCAAAGG-GATACTCTAACCTC-GGTTTTATTTTTAAAATATCGA
* * *
1282877 TTTTTCACCATCGGGGATACTCCAACCCCATTATTTTTGAGGAGAT-CTCCAACC
64 TTTTCCACCATCGGGGATACTCTAACCCCATTATTTTAGAGGAGATACTCCAACC
1282931 CTATTTTTAT
Statistics
Matches: 218, Mismatches: 48, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
156 9 0.04
157 119 0.55
158 89 0.41
159 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (158 bp):
ATACTCCAACCCCGTTATTTTCAAAGGGATACTCTAACCTCGGTTTTATTTTTAAAATATCGATT
TTCCACCATCGGGGATACTCTAACCCCATTATTTTAGAGGAGATACTCCAACCTCAGTTCTATGT
TGAAAAAATCGATTTTCCACCATCAGGG
Found at i:1282959 original size:79 final size:79
Alignment explanation
Indices: 1282797--1282961 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
1282787 GAAAAAATCG
* * *
1282797 ATTTTCCACCATTGGGGATACTCCAACCCCGTTATTTCTGAGGAGATGCTCTAACCCATGTTTTA
1 ATTTTCCACCATCGGGGATACTCCAACCCCATTATTTCTGAGGAGATGCTCCAACCCATGTTTTA
* ** **
1282862 TTTTTAAAATATCG
66 TCTCCAAAATATAA
* *
1282876 ATTTTTCACCATCGGGGATACTCCAACCCCATTATTTTTGAGGAGAT-CTCCAACCCTAT-TTTT
1 ATTTTCCACCATCGGGGATACTCCAACCCCATTATTTCTGAGGAGATGCTCCAACCC-ATGTTTT
*
1282939 ATCTCCAAACTATTAA
65 ATCTCCAAAATA-TAA
1282955 ATTTTCC
1 ATTTTCC
1282962 GTCAAGGAAC
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
78 20 0.28
79 52 0.72
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (79 bp):
ATTTTCCACCATCGGGGATACTCCAACCCCATTATTTCTGAGGAGATGCTCCAACCCATGTTTTA
TCTCCAAAATATAA
Found at i:1285018 original size:4 final size:4
Alignment explanation
Indices: 1285001--1285030 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
1284991 ATTGAAGTGC
*
1285001 TTAT TTAT TCAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1285031 TTGTTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:1290912 original size:35 final size:32
Alignment explanation
Indices: 1290846--1291010 Score: 122
Period size: 27 Copynumber: 5.2 Consensus size: 32
1290836 TCCTTTTTAT
1290846 CCATCATTCCATGCCTTCAATTTT-TATTCCATGC
1 CCATCATT--ATGCCTTC-ATTTTATATTCCATGC
*
1290880 CCATCATATTATGCCTTCATTTTTTTATTCCATG-
1 CCATC--ATTATGCCTTCA-TTTTATATTCCATGC
*
1290914 CC--C---ATGCCTTCATTTTTATATTCCATAC
1 CCATCATTATGCCTTCA-TTTTATATTCCATGC
1290942 CCATCATTCCATGCCTTCATTTTATATTCCATG-
1 CCATCATT--ATGCCTTCATTTTATATTCCATGC
*
1290975 CC--C---ATGCCTTTATTTTTATATTCCATGC
1 CCATCATTATGCCTTCA-TTTTATATTCCATGC
1291003 CCATCATT
1 CCATCATT
1291011 CCGTGTTTTT
Statistics
Matches: 108, Mismatches: 4, Indels: 39
0.72 0.03 0.26
Matches are distributed among these distances:
26 8 0.07
27 36 0.33
28 4 0.04
30 2 0.02
31 1 0.01
32 1 0.01
33 3 0.03
34 32 0.30
35 18 0.17
36 3 0.03
ACGTcount: A:0.21, C:0.30, G:0.05, T:0.44
Consensus pattern (32 bp):
CCATCATTATGCCTTCATTTTATATTCCATGC
Found at i:1290920 original size:27 final size:27
Alignment explanation
Indices: 1290890--1291006 Score: 128
Period size: 27 Copynumber: 4.1 Consensus size: 27
1290880 CCATCATATT
*
1290890 ATGCCTTCATTTTTTTATTCCATGCCC
1 ATGCCTTCATTTTTATATTCCATGCCC
*
1290917 ATGCCTTCATTTTTATATTCCATACCCATCATTCC
1 ATGCCTTCATTTTTATATTCCAT-----GC---CC
1290952 ATGCCTTCA-TTTTATATTCCATGCCC
1 ATGCCTTCATTTTTATATTCCATGCCC
*
1290978 ATGCCTTTATTTTTATATTCCATGCCC
1 ATGCCTTCATTTTTATATTCCATGCCC
1291005 AT
1 AT
1291007 CATTCCGTGT
Statistics
Matches: 77, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
26 10 0.13
27 41 0.53
29 1 0.01
32 1 0.01
34 13 0.17
35 11 0.14
ACGTcount: A:0.20, C:0.29, G:0.06, T:0.45
Consensus pattern (27 bp):
ATGCCTTCATTTTTATATTCCATGCCC
Found at i:1290921 original size:61 final size:61
Alignment explanation
Indices: 1290854--1291012 Score: 241
Period size: 61 Copynumber: 2.6 Consensus size: 61
1290844 ATCCATCATT
* * *
1290854 CCATGCCTTCAATTTT-TATTCCATGCCCATCATAT-TATGCCTTCATTTTTTTATTCCATGC
1 CCATGCCTTCATTTTTATATTCCATGCCCATCAT-TCCATGCCTTCA-TTTTATATTCCATGC
*
1290915 CCATGCCTTCATTTTTATATTCCATACCCATCATTCCATGCCTTCATTTTATATTCCATGC
1 CCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGCCTTCATTTTATATTCCATGC
*
1290976 CCATGCCTTTATTTTTATATTCCATGCCCATCATTCC
1 CCATGCCTTCATTTTTATATTCCATGCCCATCATTCC
1291013 GTGTTTTTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 65 0.72
62 25 0.28
ACGTcount: A:0.20, C:0.30, G:0.06, T:0.44
Consensus pattern (61 bp):
CCATGCCTTCATTTTTATATTCCATGCCCATCATTCCATGCCTTCATTTTATATTCCATGC
Found at i:1291685 original size:40 final size:41
Alignment explanation
Indices: 1291639--1291770 Score: 151
Period size: 42 Copynumber: 3.2 Consensus size: 41
1291629 CCACTTTTTT
* *
1291639 TTGAGGACAAA-GAAAAGGGGAATGAAATGGGTCCTGCTCC
1 TTGAGGACAAAGGAAAAGGGGAAAGAAATGTGTCCTGCTCC
* * *
1291679 TTGAGGACAAAGGAAAAGAAGAAAAGGAAA-GTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAG-GGGAAA-GAAATGTGTCCTGCTCC
* * *
1291721 TTGAGGACAAAGTGAAAAAGGGAAAGAAGTGTGTCCTGCTCT
1 TTGAGGACAAAG-GAAAAGGGGAAAGAAATGTGTCCTGCTCC
1291763 TTGAGGAC
1 TTGAGGAC
1291771 TGAAAAGTGC
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
40 11 0.14
41 9 0.12
42 47 0.62
43 9 0.12
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAGGGGAAAGAAATGTGTCCTGCTCC
Found at i:1291879 original size:100 final size:100
Alignment explanation
Indices: 1291753--1291937 Score: 273
Period size: 100 Copynumber: 1.9 Consensus size: 100
1291743 AAAGAAGTGT
* * *
1291753 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCATGTGGTCTTTGAAAAGAAAAGGCGTCC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCATATGGGCTTTGAAAAGAAAAGGCGTCA
1291818 TGCTCTCTGAGGACTAAAGGGTGAAAGGAGAGAGC
66 TGCTCTCTGAGGACTAAAGGGTGAAAGGAGAGAGC
* ** *
1291853 GTCCTGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAAGGCGTC
1 GTCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTCATATGGGCTTTGAAAAGAAAAGGCGTC
* *
1291917 ATGCTCTTTGAGGACTGAAGG
65 ATGCTCTCTGAGGACTAAAGG
1291938 TGCCACCAAC
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
99 1 0.01
100 74 0.99
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (100 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCATATGGGCTTTGAAAAGAAAAGGCGTCA
TGCTCTCTGAGGACTAAAGGGTGAAAGGAGAGAGC
Found at i:1292015 original size:55 final size:55
Alignment explanation
Indices: 1291851--1292042 Score: 280
Period size: 55 Copynumber: 3.4 Consensus size: 55
1291841 AAAGGAGAGA
*
1291851 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTATGGGCTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
*
1291912 GCGTCATGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
*
1291966 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
1292021 GCGTCCTGCTCTTTGAGGACTA
1 GCGTCCTGCTCTTTGAGGACTA
1292043 AAGGGTGAAA
Statistics
Matches: 124, Mismatches: 4, Indels: 12
0.89 0.03 0.09
Matches are distributed among these distances:
54 24 0.19
55 51 0.41
56 3 0.02
59 3 0.02
60 23 0.19
61 20 0.16
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:1292062 original size:209 final size:207
Alignment explanation
Indices: 1291753--1293529 Score: 1055
Period size: 210 Copynumber: 8.4 Consensus size: 207
1291743 AAAGAAGTGT
* ** *
1291753 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCATGTGGTCTTTGAAAAGAAAAGGCGTCC
1 GTCCTGCTCTTTGAGGACT-AGAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCGTCC
* *
1291818 TGCTCTCTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCA
59 TGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCCA
* * *
1291883 CCAACTTGTATGGGCTTTGAAAGGAAAAGGCGTCATGCTCTTTGAGGACTG-AAGGTGCCACCAA
124 CCAACATGTATGGGCTTT------AAAAGGAGTCATGCTCTTTGAGGACCGAAAGGTGCCACCAA
1291947 CTTGTGTGGGC-TT-T-G-AAAGGC
183 CTTGTGTGGGCTTTATGGAAAAGGC
1291968 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTA-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
*
1292033 TTGAGGACTAAAGGGTGAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCCACCAACA
65 TTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCCACCAACA
* *
1292098 TGTGTGGGCTTTAAAAGGAGTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCT
130 TGTATGGGCTTTAAAAGGAGTCATGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCT
*
1292163 TTGAAATGGAAAAGGT
195 TT---ATGGAAAAGGC
* ** * *
1292179 GTCCTACTCTTTGACAACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
* *
1292243 TTGAGGAC--AAGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCCTAG-TCTTTGAGGA
65 TTGAGGACTAAAGG--GTG--A--AA-----G-GAG-----AGA-GCGTCCT-GCTCTTTGAGGA
**** * * * * * * *
1292305 CTA--AA--G-GGTGAA-A-G---GGG-----AGA-GCGTCCTGCTCTTTGAGCACTAGGAA-GA
111 CTAGGAACTGCCACCAACATGTATGGGCTTTAAAAGGAGTCATGCTCTTTGAGGAC-CGAAAGGT
* *
1292353 GCCACCAACATGTGTGGGCTTTGAAATGGAAAAGGT
175 GCCACCAACTTGTGTGGGCTTT---ATGGAAAAGGC
* *
1292389 GTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTTT
1 GTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
** ** ** *** * ** ** ** *
1292453 TTGAGGACTGGA-GGTGCCACCA-A-CTTGT-GTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTT
65 TTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTG--AGGACTA-G-GAACTGC-C-A
** * * * * * *
1292514 TGAGGAC-TG-AAGGG--TGAGAGAAGAGAGTATCCTGCTCTCTGAGGACTAGGAA-GTGCCACC
124 CCA--ACATGTATGGGCTTTA-A-AAG-GAG--TCATGCTCTTTGAGGAC-CGAAAGGTGCCACC
* *
1292574 AACTTGTGTGGGC-TT-T--AAAATGA
181 AACTTGTGTGGGCTTTATGGAAAAGGC
*
1292597 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGAGAAGGTGTC
1 GTCCTGCTCTTTGAGGACTAG-AA-GTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCGTC
* * *
1292661 CTGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTAGGAAGTGCC
58 CTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCC
* * * * *
1292726 ACCAACTTGTGTGGGATTTAAAAGGAAAAGATGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCA
123 ACCAACATGTATGGGCTTTAAAA-G----GA-GTCATGCTCTTTGAGGACCGAAAGGTGCCACCA
* *
1292790 ACTTGTGTGGACTTTGAAAGGAAAAGGC
182 ACTTGTGTGGGCTTT--ATGGAAAAGGC
*
1292818 GTCTTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
1 GTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCCT
* * * *
1292882 GCTCCTTGAGGACTGAA-GGTGCCACCAACTTGTGTTGGCTTTGAAAGGCGTCCTGCTCTTTGAG
60 GCTCTTTGAGGACTAAAGGGTG--A--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAG
** * * * * * * *
1292946 GACTA--AA--G-GGCGAA-A-G---GAG-----AGA-GTGTCCTGCTCTTTGAGGACTAGGAA-
109 GACTAGGAACTGCCACCAACATGTATGGGCTTTAAAAGGAGTCATGCTCTTTGAGGAC-CGAAAG
* * *
1292994 GTGCCACCAACTTGTGCGGGC-TT-T--AAAATGA
173 GTGCCACCAACTTGTGTGGGCTTTATGGAAAAGGC
*
1293025 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTC
1 GTCCTGCTCTTTGAGGACTAG-AA-GTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCGTC
* *
1293089 CTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTAGGAAGTGCC
58 CTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCC
* * * * *
1293154 ACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGCTCTTTGAGGACTG-AAGGTGCCACAA
123 ACCAACATGTATGGGCTTTAAAA-G----GA-GTCATGCTCTTTGAGGACCGAAAGGTGCCACCA
*
1293218 ACTTGTGTGGGCTTTGAAAGGAAAAGGC
182 ACTTGTGTGGGCTTT--ATGGAAAAGGC
*
1293246 GTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACCTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
* *
1293310 TTGAGGACTAAAGGGTGAAAGGGGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACA
65 TTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCCACCAACA
* *
1293375 TGTGTGGGCTTTAAAAGGAGTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCT
130 TGTATGGGCTTTAAAAGGAGTCATGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCT
*
1293440 TTGAAATGGAAAAGGT
195 TT---ATGGAAAAGGC
* * *
1293456 GTCCTGCTCTTTGAGGACTA-AAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCT
1 GTCCTGCTCTTTGAGGACTAGAAG-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
1293520 TTGAGGACTA
65 TTGAGGACTA
1293530 GGAAGTGCCA
Statistics
Matches: 1263, Mismatches: 154, Indels: 295
0.74 0.09 0.17
Matches are distributed among these distances:
189 1 0.00
190 6 0.00
191 2 0.00
192 5 0.00
193 1 0.00
194 21 0.02
195 3 0.00
196 2 0.00
198 4 0.00
199 3 0.00
201 4 0.00
203 25 0.02
204 27 0.02
205 3 0.00
206 8 0.01
207 24 0.02
208 76 0.06
209 178 0.14
210 254 0.20
211 31 0.02
212 24 0.02
213 30 0.02
214 106 0.08
215 153 0.12
216 48 0.04
217 9 0.01
218 7 0.01
219 34 0.03
220 58 0.05
221 51 0.04
222 5 0.00
224 4 0.00
225 2 0.00
226 20 0.02
227 2 0.00
229 3 0.00
230 3 0.00
232 2 0.00
233 3 0.00
234 21 0.02
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (207 bp):
GTCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
TGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCCACCAACAT
GTATGGGCTTTAAAAGGAGTCATGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTT
TATGGAAAAGGC
Found at i:1292146 original size:55 final size:55
Alignment explanation
Indices: 1292062--1292305 Score: 251
Period size: 55 Copynumber: 4.3 Consensus size: 55
1292052 AGGGGAGAGC
* * * * *
1292062 GTCCTGCTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGGCTTTAAAAGGA
1 GTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
*
1292117 GTCCTGCTCTTTGAGGAC-CGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGT
1 GTCCTGCTCTTTGAGGACAAGAAA-GTGCCACCAACTTGTGTGGGC-TT----T--AAAAGGT
* ** * * *
1292179 GTCCTACTCTTTGACAACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGT
1 GTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
* * *
1292233 GTCCTGCTCTTTGAGGACAAGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGC
1 GTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
1292288 GTCCTAG-TCTTTGAGGAC
1 GTCCT-GCTCTTTGAGGAC
1292306 TAAAGGGTGA
Statistics
Matches: 158, Mismatches: 20, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
54 25 0.16
55 82 0.52
56 4 0.03
60 3 0.02
61 21 0.13
62 23 0.15
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACAAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
Found at i:1292216 original size:61 final size:62
Alignment explanation
Indices: 1292110--1292229 Score: 188
Period size: 61 Copynumber: 2.0 Consensus size: 62
1292100 TGTGGGCTTT
* * *
1292110 AAAAGGAGTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGG
1 AAAAGGAGTCCTACTCTTTGAGCAACGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGG
* *
1292172 AAAAGGTGTCCTACTCTTTGA-CAACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
1 AAAAGGAGTCCTACTCTTTGAGCAACGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
1292230 GGTGTCCTGC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
61 34 0.64
62 19 0.36
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (62 bp):
AAAAGGAGTCCTACTCTTTGAGCAACGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGG
Found at i:1292227 original size:265 final size:267
Alignment explanation
Indices: 1291853--1292495 Score: 961
Period size: 265 Copynumber: 2.4 Consensus size: 267
1291843 AGGAGAGAGC
*
1291853 GTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTATGGGCTTTGAAA-GGAAAAGGCGT
1 GTCCTGCTCTTTGAGGAC-A-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGCGT
*
1291916 CATGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
64 CCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
*
1291981 AGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCT-GCTCTTTGAGGACTAAA
129 AGGACAAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTAG-TCTTTGAGGACTAAA
* *
1292045 GGGTGAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGGC-TT
193 GGGTGAAAGGGGAGAGCGTCCTGCTCTTTGAGCACTAGGAACAGCCACCAACATGTGTGGGCTTT
1292109 -T-AAAAGGA
258 ATGAAAAGGA
* *
1292117 GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGTGTC
1 GTCCTGCTCTTTGAGGACAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGCGTC
* ** * *
1292182 CTACTCTTTGACAACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGA
65 CTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
*
1292247 GGACAAGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCCTAGTCTTTGAGGACTAAAGG
130 GGACAAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTAGTCTTTGAGGACTAAAGG
*
1292312 GTGAAAGGGGAGAGCGTCCTGCTCTTTGAGCACTAGGAAGAGCCACCAACATGTGTGGGCTTTGA
195 GTGAAAGGGGAGAGCGTCCTGCTCTTTGAGCACTAGGAACAGCCACCAACATGTGTGGGCTTT--
*
1292377 AATGGAAAAGGT
258 -AT-GAAAAGGA
*
1292389 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC-TT----T-G-AAAGGCGTCC
1 GTCCTGCTCTTTGAGGACAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGCGTCC
* *
1292447 TGCTTTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
66 TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1292496 AAAAGGCGTC
Statistics
Matches: 345, Mismatches: 23, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
262 1 0.00
263 2 0.01
264 97 0.28
265 189 0.55
266 4 0.01
270 3 0.01
271 24 0.07
272 25 0.07
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (267 bp):
GTCCTGCTCTTTGAGGACAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGCGTCC
TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
GACAAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTAGTCTTTGAGGACTAAAGGG
TGAAAGGGGAGAGCGTCCTGCTCTTTGAGCACTAGGAACAGCCACCAACATGTGTGGGCTTTATG
AAAAGGA
Found at i:1292468 original size:54 final size:54
Alignment explanation
Indices: 1292383--1292526 Score: 207
Period size: 54 Copynumber: 2.6 Consensus size: 54
1292373 TTGAAATGGA
*
1292383 AAAGGTGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTG
* *
1292437 AAAGGCGTCCTGCTTTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-----G
1292496 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
1 -AAAGGCGTCCTGCTCTTTGAGGACTGAAGG
1292527 GTGAGAGAAG
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
54 50 0.63
59 1 0.01
60 28 0.35
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (54 bp):
AAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTG
Found at i:1292627 original size:55 final size:55
Alignment explanation
Indices: 1292543--1292652 Score: 177
Period size: 55 Copynumber: 2.0 Consensus size: 55
1292533 GAAGAGAGTA
*
1292543 TCCTGCTCTCTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAG
1 TCCTGCTCTCTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAG
* *
1292598 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGAG
1 TCCTGCTCTCTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAATGAG
1292653 AAGGTGTCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
54 3 0.06
55 48 0.94
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTCTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAG
Found at i:1292670 original size:155 final size:154
Alignment explanation
Indices: 1292390--1292841 Score: 638
Period size: 155 Copynumber: 2.9 Consensus size: 154
1292380 GGAAAAGGTG
* * * *
1292390 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTTT
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAGTCCTGCTCT
*
1292453 TTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAG
65 TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAG
* *
1292518 GACTGAAGGGTGAGAGAAGAGAGTA
130 GACTGAAGGGTGAAAGAAGAGAGCA
* *
1292543 TCCTGCTCTCTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGTCCTGCTCTT
* * *
1292608 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGAGAAGGTGTCCTGCTCTTTGAG
66 TGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAG
* * * *
1292673 AACTAAAGGGTGAAAGGAGAGAGCG
130 GACTGAAGGGTGAAAGAAGAGAGCA
* *
1292698 TCCTGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGATGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT---A--AAAAGA-GTCCT
* *
1292763 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGACTTTGAAAGGAAAAGGCGTCTTGCTCT
60 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCT
1292828 TTGAGGACTGAAGG
125 TTGAGGACTGAAGG
1292842 TGCCACCAAC
Statistics
Matches: 264, Mismatches: 26, Indels: 11
0.88 0.09 0.04
Matches are distributed among these distances:
153 17 0.06
154 47 0.18
155 117 0.44
158 1 0.00
160 62 0.23
161 20 0.08
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (154 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGTCCTGCTCTT
TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGG
ACTGAAGGGTGAAAGAAGAGAGCA
Found at i:1292770 original size:100 final size:100
Alignment explanation
Indices: 1292597--1292781 Score: 273
Period size: 100 Copynumber: 1.9 Consensus size: 100
1292587 TTTAAAATGA
* * * * *
1292597 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGAGAAGGTGTCC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGATGTCC
1292662 TGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGC
66 TGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGC
* *
1292697 GTCCTGCTCTTTGTGGACTAGGAA-GTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGATGTC
1 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGATGTC
* *
1292761 CTGCTCTTTGAGGACTGAAGG
65 CTGCTCTTTGAGAACTAAAGG
1292782 TGCCACCAAC
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
100 72 0.96
101 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (100 bp):
GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGATGTCC
TGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGC
Found at i:1292899 original size:119 final size:120
Alignment explanation
Indices: 1292695--1292950 Score: 368
Period size: 119 Copynumber: 2.2 Consensus size: 120
1292685 AAAGGAGAGA
* *
1292695 GCGTCCTGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGATGT
1 GCGTCCTGCTCTTTGAGGACTA-GAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGACGT
*
1292760 CCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTG-TGGACTTTGAAAGGAAAAG
65 CCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGG-CTTTGAAAGGAAAAG
* * *
1292816 GCGTCTTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGACGT
1292879 CCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTT-----G-AAAG
65 CCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTTGAAAGGAAAAG
1292929 GCGTCCTGCTCTTTGAGGACTA
1 GCGTCCTGCTCTTTGAGGACTA
1292951 AAGGGCGAAA
Statistics
Matches: 125, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
113 24 0.19
114 1 0.01
119 51 0.41
120 30 0.24
121 19 0.15
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (120 bp):
GCGTCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGACGTC
CTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTTGAAAGGAAAAG
Found at i:1292902 original size:59 final size:59
Alignment explanation
Indices: 1292695--1292954 Score: 352
Period size: 60 Copynumber: 4.4 Consensus size: 59
1292685 AAAGGAGAGA
* *
1292695 GCGTCCTGCTCTTTGTGGACTAGGAA-GTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAG
** * *
1292756 ATGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGACTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAG
*
1292816 GCGTCTTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG
* *
1292875 GCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTT----G-AAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG
*
1292929 GCGTCCTGCTCTTTGAGGACTAAAGG
1 GCGTCCTGCTCTTTGAGGACTGAAGG
1292955 GCGAAAGGAG
Statistics
Matches: 181, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
54 28 0.15
55 1 0.01
59 58 0.32
60 73 0.40
61 21 0.12
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (59 bp):
GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG
Found at i:1292994 original size:428 final size:429
Alignment explanation
Indices: 1292326--1293323 Score: 1595
Period size: 428 Copynumber: 2.3 Consensus size: 429
1292316 AAGGGGAGAG
* * * *
1292326 CGTCCTGCTCTTTGAGCACTAGGAA-GAGCCACCAACATGTGTGGGCTTTGAAATGGAAAAGGTG
1 CGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGAAAAGGCG
1292390 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAGGCGTCCTGCT
63 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGCT
** *
1292451 TTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTG
128 CCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT---A-GAAAAGGCGTCCTGCTCTTTG
* * *
1292516 AGGACTGAAGGGTGAGAGAAGAGAGTATCCTGCTCTCTGAGGACTAGGAAGTGCCACCAACTTGT
189 AGGACTAAAGGGCGAAAGAAGAGAGTATCCTGCTCTCTGAGGACTAGGAAGTGCCACCAACTTGT
* * *
1292581 GTGGGCTTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG
254 GCGGGCTTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTA
* *
1292646 AAATGAGAAGGTGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGT
319 AAAGGAGAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGT
1292711 GGACTAGGAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGA
384 GGACTAGGAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGA
* * *
1292757 TGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGACTTTGAAAGGAAAAGGCGTCT
1 CGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
1292822 TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCC
66 TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAGGCGTCCTGCTCC
*
1292887 TTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTT-G-AAAGGCGTCCTGCTCTTTGAGGACT
130 TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCTCTTTGAGGACT
* * *
1292950 AAAGGGCGAAAGGAGAGAGTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGCGGGC
195 AAAGGGCGAAAGAAGAGAGTATCCTGCTCTCTGAGGACTAGGAAGTGCCACCAACTTGTGCGGGC
1293015 TTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGA
260 TTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGA
*
1293080 GAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTA
325 GAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTA
*
1293145 GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGA
390 GGAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGA
*
1293185 CGTCCTGCTCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
1 CGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
* *
1293250 TGCTCTTTGAGGACTGAAGGTGCCACCAACCTGTGTGGGCTTT---A-AAAGGCGTCCTGCTCTT
66 TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGCTCCT
*
1293311 TGAGGACTAAAGG
131 TGAGGACTGAAGG
1293324 GTGAAAGGGG
Statistics
Matches: 530, Mismatches: 31, Indels: 20
0.91 0.05 0.03
Matches are distributed among these distances:
423 28 0.05
425 1 0.00
428 350 0.66
429 58 0.11
430 25 0.05
431 18 0.03
433 1 0.00
434 49 0.09
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (429 bp):
CGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGCTCCT
TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCTCTTTGAGGACTA
AAGGGCGAAAGAAGAGAGTATCCTGCTCTCTGAGGACTAGGAAGTGCCACCAACTTGTGCGGGCT
TTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAG
AAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTAG
GAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGA
Found at i:1293005 original size:94 final size:94
Alignment explanation
Indices: 1292877--1293049 Score: 260
Period size: 94 Copynumber: 1.8 Consensus size: 94
1292867 AAGAAAAGGC
** * *
1292877 GTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTTGAAAGGCGTCCTGCTCTT
1 GTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGGAGTCCTGCTCTT
1292942 TGAGGACT-AAAGGGCGAAAGGAGAGAGT
66 TGAGGACTGAAAGGGCGAAAGGAGAGAGT
* *
1292970 GTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGCGGGCTTTAAAATGAGTCCTGCTC
1 GTCCTGCTCCTTGAGGACT--GAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGGAGTCCTGCTC
1293034 TTTGAGGACTGAAAGG
64 TTTGAGGACTGAAAGG
1293050 TGCCACCAAC
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
93 18 0.25
94 45 0.63
95 8 0.11
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.26
Consensus pattern (94 bp):
GTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGCGGGCTTTAAAAGGAGTCCTGCTCTT
TGAGGACTGAAAGGGCGAAAGGAGAGAGT
Found at i:1293035 original size:55 final size:55
Alignment explanation
Indices: 1292970--1293076 Score: 171
Period size: 55 Copynumber: 1.9 Consensus size: 55
1292960 AGGAGAGAGT
* *
1292970 GTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGCGGGCTTTAAAATGA
1 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTATGCGGGCTTTAAAATGA
*
1293025 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAA
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGCGGGCTTTAAAA
1293077 GGAGAAGGCG
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
54 3 0.06
55 45 0.94
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGCGGGCTTTAAAATGA
Found at i:1293107 original size:155 final size:152
Alignment explanation
Indices: 1292816--1293269 Score: 607
Period size: 155 Copynumber: 2.9 Consensus size: 152
1292806 AAAGGAAAAG
*
1292816 GCGTCTTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAG---A--CGT
* *
1292879 CCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTT----GAAAGGCGTCCTGCTC
60 CCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAGGCGTCCTGCTC
1292940 TTTGAGGACTAAAGGGCGAAAGGAGAGA
125 TTTGAGGACTAAAGGGCGAAAGGAGAGA
* *
1292968 GTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGCGGGCTTTAAAATGA-GTCCTGC
1 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GACGTCCTGC
*
1293032 TCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTT
65 TCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGA-AAGGCGTCCTGCTCTT
*
1293097 TGAGGACTAAAGGGTGAAAGGAGAGA
127 TGAGGACTAAAGGGCGAAAGGAGAGA
*
1293123 GCGTCCTGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGT
1 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGACGT
*
1293188 CCTGCTCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGC
60 CCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGG-AAAGGCGTCCTGC
*
1293253 TCTTTGAGGACTGAAGG
123 TCTTTGAGGACTAAAGG
1293270 TGCCACCAAC
Statistics
Matches: 270, Mismatches: 14, Indels: 28
0.87 0.04 0.09
Matches are distributed among these distances:
148 19 0.07
149 25 0.09
151 1 0.00
152 19 0.07
153 27 0.10
154 6 0.02
155 88 0.33
160 60 0.22
161 25 0.09
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (152 bp):
GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCT
CTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAGGCGTCCTGCTCTTTGAG
GACTAAAGGGCGAAAGGAGAGA
Found at i:1293198 original size:100 final size:100
Alignment explanation
Indices: 1293025--1293209 Score: 300
Period size: 100 Copynumber: 1.9 Consensus size: 100
1293015 TTTAAAATGA
* *
1293025 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTCC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGACGTCC
1293090 TGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
66 TGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
* * *
1293125 GTCCTGCTCTTTGTGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTC
1 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGACGTC
*
1293189 CTGCTCTTTGAGGACTGAAGG
65 CTGCTCTTTGAGGACTAAAGG
1293210 TGCCACAAAC
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
100 75 0.96
101 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (100 bp):
GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGACGTCC
TGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
Found at i:1293238 original size:60 final size:60
Alignment explanation
Indices: 1293124--1293298 Score: 280
Period size: 60 Copynumber: 2.9 Consensus size: 60
1293114 AAGGAGAGAG
*
1293124 CGTCCTGCTCTTTGTGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGA
1 CGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGA
* * *
1293185 CGTCCTGCTCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGG
1 CGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGA
*
1293245 CGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACCTGTGTGGGCTTTAAAAGG
1 CGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1293299 CGTCCTGCTC
Statistics
Matches: 106, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
59 3 0.03
60 84 0.79
61 19 0.18
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (60 bp):
CGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGA
Found at i:1293351 original size:214 final size:208
Alignment explanation
Indices: 1292543--1293529 Score: 911
Period size: 214 Copynumber: 4.6 Consensus size: 208
1292533 GAAGAGAGTA
* *
1292543 TCCTGCTCTCTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT------AAAATGAGTCC
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGAGTCC
*
1292601 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGAGAAGGTGTCCTGCT
64 TGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCGTCCTGCT
* * * *
1292666 CTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTAGGAAGTGCCACCAA
122 CTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAA
* *
1292731 CTTGTGTGGGATTTAAAAGGAAAAGATG
187 CATGTGTGGGCTTTAAAA-G----GA-G
* * *
1292759 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGACTTTGAAAGGAAAAGGCGTCTTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGAGTCCTG
*
1292824 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCCTT
66 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCCTGCTCTTT
* * * *
1292889 GAGGACTGAA-GGTGCCACCAACTTGTGTTGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA--
126 GAGGACTAAAGGGTG--A--AA--------GG---AGAGA-GCGTCCTACTCTTTGAGGACTAGG
** * * * *
1292951 AA--G-GGCGAA-A---G-GAG-----AGA-GTG
175 AACTGCCACCAACATGTGTGGGCTTTAAAAGGAG
* *
1292971 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGCGGGCTTT------AAAATGAGTCC
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGAGTCC
*
1293029 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGCGTCCTGCT
64 TGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCGTCCTGCT
* * *
1293094 CTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTAGGAAGTGCCACCAA
122 CTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAA
*
1293159 CTTGTGTGGGCTTTAAAAGGAAAAGACG
187 CATGTGTGGGCTTTAAAA-G----GA-G
* *
1293187 TCCTGCTCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGAGTCCTG
*
1293252 CTCTTTGAGGACTGAAGGTGCCACCAACCTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
66 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
*
1293317 CTAAAGGGTGAAAGGGGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGG
131 CTAAAGGGTGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGG
1293382 GCTTTAAAAGGAG
196 GCTTTAAAAGGAG
* *
1293395 TCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGTGTCC
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGAAAAGGAGTCC
* * * * *
1293460 TGCTCTTTGAGGACTAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCTTTGAG
64 TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
1293525 GACTA
129 GACTA
1293530 GGAAGTGCCA
Statistics
Matches: 648, Mismatches: 60, Indels: 132
0.77 0.07 0.16
Matches are distributed among these distances:
194 21 0.03
195 3 0.00
196 2 0.00
198 3 0.00
199 3 0.00
203 1 0.00
204 2 0.00
206 5 0.01
207 24 0.04
208 47 0.07
209 59 0.09
210 80 0.12
212 19 0.03
213 24 0.04
214 100 0.15
215 47 0.07
216 36 0.06
217 1 0.00
218 4 0.01
219 25 0.04
220 54 0.08
221 49 0.08
222 4 0.01
224 2 0.00
225 1 0.00
229 3 0.00
230 3 0.00
232 2 0.00
233 3 0.00
234 21 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.26
Consensus pattern (208 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGAGTCCTG
CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
CTAAAGGGTGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGG
GCTTTAAAAGGAG
Found at i:1293538 original size:116 final size:116
Alignment explanation
Indices: 1293339--1293557 Score: 325
Period size: 116 Copynumber: 1.9 Consensus size: 116
1293329 AGGGGAGAGC
1293339 GTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGGCTTTAAAAGGAGTCCTGCTCT
1 GTCCTACTCTTTGAGGACTA-GAACTGCCACCAACATGTGTGGGCTTTAAAAGGAGTCCTGCTCT
*
1293404 TTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGT
65 TTGAGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGT
* * * * *
1293456 GTCCTGCTCTTTGAGGACTA-AAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCT
1 GTCCTACTCTTTGAGGACTAGAA-CTGCCACCAACATGTGTGGGCTTTAAAAGGAGTCCTGCTCT
* *
1293520 TTGAGGACTAGGAA-GTGCCACTAACTTGTGTGGGCTTT
65 TTGAGGAC-AGAAAGGTGCCACCAACTTGTGTGGGCTTT
1293558 AAAAGGCGTC
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
115 2 0.02
116 68 0.74
117 22 0.24
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (116 bp):
GTCCTACTCTTTGAGGACTAGAACTGCCACCAACATGTGTGGGCTTTAAAAGGAGTCCTGCTCTT
TGAGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGT
Found at i:1293583 original size:55 final size:55
Alignment explanation
Indices: 1293339--1293584 Score: 291
Period size: 55 Copynumber: 4.4 Consensus size: 55
1293329 AGGGGAGAGC
* * * *
1293339 GTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGGCTTTAAAAGGA
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
* *
1293394 GTCCTGCTCTTTGAGGAC-CGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGT
1 GTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGC-TT----T--AAAAGGT
*
1293456 GTCCTGCTCTTTGAGGACTA--AAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGT
1 GTCCTGCTCTTTGAGGACTAGGAAG-TGCCACCAACTTGTGTGGGCTTTAAAAGGT
* * *
1293510 GTCCTGTTCTTTGAGGACTAGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
*
1293565 GTCTTGCTCTTTGAGGACTA
1 GTCCTGCTCTTTGAGGACTA
1293585 AAGGGTAAAA
Statistics
Matches: 165, Mismatches: 14, Indels: 24
0.81 0.07 0.12
Matches are distributed among these distances:
54 28 0.17
55 81 0.49
56 6 0.04
60 4 0.02
61 22 0.13
62 24 0.15
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
Found at i:1293587 original size:265 final size:263
Alignment explanation
Indices: 1293125--1294013 Score: 1323
Period size: 265 Copynumber: 3.3 Consensus size: 263
1293115 AGGAGAGAGC
* * * *
1293125 GTCCTGCTCTTTGTGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTC
1 GTCCTGCTCTTTGAGGAC-CGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTC
* *
1293189 CTGCTCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCT
65 CTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCT
*
1293254 CTTTGAGGACT-GAAGGTGCCACCAACCTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAC
124 CTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAC
* *
1293318 TAAAGGGTGAAAGGGGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGG
188 TAAAGGGTGAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGG
1293383 CTTTAAAAGGA
253 CTTTAAAAGGA
* *
1293394 GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGTGTC
1 GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTC
* * *
1293459 CTGCTCTTTGAGGACTAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCTTTGA
65 CTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
* *
1293524 GGACTAGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCTTGCTCTTTGAGGACTAAAGG
130 GGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
*
1293589 GTAAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGGCTTTAA
194 GTGAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGGCTTTAA
1293654 AAGGA
259 AAGGA
* *
1293659 GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGTGTC
1 GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTC
*
1293724 CTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
65 CTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
*
1293789 GGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGGACT
130 GGACTGGAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCGTCCTGCTCTTTGAGGACT
* * ** *** *
1293854 GAAGGGTGAGAGAAGAGAGTACCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGC
189 AAAGGGTGAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGGC
*
1293919 TTTAAAATGA
254 TTTAAAAGGA
* *
1293929 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
1 GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1293994 TGCTCTTTGAGGACTAAAGG
66 TGCTCTTTGAGGACTAAAGG
1294014 GTGAAAGGAG
Statistics
Matches: 571, Mismatches: 39, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
264 49 0.09
265 251 0.44
266 3 0.01
268 3 0.01
269 74 0.13
270 191 0.33
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.26
Consensus pattern (263 bp):
GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
GACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGT
GAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGGCTTTAAAA
GGA
Found at i:1293800 original size:54 final size:56
Alignment explanation
Indices: 1293602--1293858 Score: 326
Period size: 54 Copynumber: 4.5 Consensus size: 56
1293592 AAAGGGGAGA
*
1293602 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACATGTGTGGGCTTT--AAAAG
1 GCGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAG
* *
1293657 GAGTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT---A--GAAAAG
*
1293719 GTGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-G-AAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAG
*
1293773 GCGTCCTGCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT---A-GAAAAG
1293833 GCGTCCTGCTCTTTGAGGACTGAAGG
1 GCGTCCTGCTCTTTGAGGACTGAAGG
1293859 GTGAGAGAAG
Statistics
Matches: 179, Mismatches: 8, Indels: 25
0.84 0.04 0.12
Matches are distributed among these distances:
53 1 0.01
54 53 0.30
55 43 0.24
59 1 0.01
60 29 0.16
61 27 0.15
62 25 0.14
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.26
Consensus pattern (56 bp):
GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAG
Found at i:1293939 original size:904 final size:904
Alignment explanation
Indices: 1292543--1294201 Score: 2771
Period size: 904 Copynumber: 1.8 Consensus size: 904
1292533 GAAGAGAGTA
*
1292543 TCCTGCTCTCTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGTCCTGCTCTT
1 TCCTGCTCTCTGAGGACTA-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGTCCTGCTCTT
*
1292608 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGAGAAGGTGTCCTGCTCTTTGAG
65 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AA-GAGAAGGCGTCCTGCTCTTTGAG
* * *
1292673 AACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGT
127 AACTAAAGGGTAAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGT
*
1292738 GGGATTTAAAAGGAAAAGATGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGACT
192 GGGATTTAAAAGG---AGATGTCCTGCTCTTTGAGGACCGAAGGTGCCACCAACTTGTGTGGACT
*
1292803 TTGAAAGGAAAAGGCGTCTTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAA
254 TTGAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT---
*
1292868 AGAAAAGGCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTTGGCTTTGAAAGGCGT
316 AGAAAAGGCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGT
* **
1292933 CCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGTGTCCTGCTCTTTGAGGACTAGGAAGTGC
381 CCTGCTCTTTGAGGACTAAAGGGCGAAAGAAGAGAGTACCCTGCTCTTTGAGGACTAGGAAGTGC
1292998 CACCAACTTGTGCGGGCTTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTA
446 CACCAACTTGTGCGGGCTTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTA
1293063 TGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTC
511 TGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTC
*
1293128 CTGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGC
576 ATGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGC
1293193 TCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTT
641 TCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTT
1293258 GAGGACTGAAGGTGCCACCAACCTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAG
706 GAGGACTGAAGGTGCCACCAACCTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAG
1293323 GGTGAAAGGGGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGGCTTTA
771 GGTGAAAGGGGAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGGCTTTA
1293388 AAAGGAGTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAA
836 AAAGGAGTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAA
1293453 GGTG
901 GGTG
* * * *
1293457 TCCTGCTCTTTGAGGACTA-AAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCTT
1 TCCTGCTCTCTGAGGACTAGAAG-TGCCACCAACTTGTGTGGGCTTTAAAAGGAGTCCTGCTCTT
* * * *
1293521 TGAGGACTAGGAA-GTGCCACTAACTTGTGTGGGCTTT-A-A-AAGGCGTCTTGCTCTTTGAGGA
65 TGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAGGCGTCCTGCTCTTTGAGAA
*
1293582 CTAAAGGGTAAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGG
129 CTAAAGGGTAAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGG
* *
1293647 GCTTTAAAA-G-GA-GTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGA
194 GATTTAAAAGGAGATGTCCTGCTCTTTGAGGACCG-AAGGTGCCACCAACTTGTGTGGACTTTGA
*
1293709 AATGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-G-AAA
258 AA-GGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAA
* *
1293772 GGCGTCCTGCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGT
322 GGCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGT
* * *
1293837 CCTGCTCTTTGAGGACTGAAGGGTGAGAGAAGAGAGTACCCTGCTCTTTGAGGACTAGGAAGTGC
381 CCTGCTCTTTGAGGACTAAAGGGCGAAAGAAGAGAGTACCCTGCTCTTTGAGGACTAGGAAGTGC
* *
1293902 CACCAACTTGTGTGGGCTTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTG
446 CACCAACTTGTGCGGGCTTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTA
1293967 TGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTC
511 TGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTC
1294032 ATGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGC
576 ATGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGC
*
1294097 TCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTT
641 TCTTTGAGGACTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTT
*
1294162 GAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
706 GAGGACTGAAGGTGCCACCAACCTGTGTGGGCTTTAAAAG
1294202 AAAAGGCGTC
Statistics
Matches: 702, Mismatches: 33, Indels: 30
0.92 0.04 0.04
Matches are distributed among these distances:
898 50 0.07
899 1 0.00
901 19 0.03
902 32 0.05
903 55 0.08
904 362 0.52
906 1 0.00
907 88 0.13
908 1 0.00
910 1 0.00
912 3 0.00
913 68 0.10
914 21 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (904 bp):
TCCTGCTCTCTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGTCCTGCTCTTT
GAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAGGCGTCCTGCTCTTTGAGAACT
AAAGGGTAAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACATGTGTGGGA
TTTAAAAGGAGATGTCCTGCTCTTTGAGGACCGAAGGTGCCACCAACTTGTGTGGACTTTGAAAG
GAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAGGCG
TCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
GAGGACTAAAGGGCGAAAGAAGAGAGTACCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTG
TGCGGGCTTTAAAATGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTT
AAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCATGCTCTTTG
TGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGCTCTTTGAGGA
CTGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAA
GGTGCCACCAACCTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGG
GAGAGCGTCCTACTCTTTGAGGACTAGGAACTGCCACCAACATGTGTGGGCTTTAAAAGGAGTCC
TGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGGAAAAGGTG
Found at i:1293960 original size:55 final size:55
Alignment explanation
Indices: 1293876--1293980 Score: 185
Period size: 55 Copynumber: 1.9 Consensus size: 55
1293866 AAGAGAGTAC
*
1293876 CCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGT
1 CCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGT
1293931 CCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 CCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAA
1293981 GGAGAAGGCG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
54 3 0.06
55 45 0.94
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (55 bp):
CCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGT
Found at i:1294003 original size:155 final size:154
Alignment explanation
Indices: 1293723--1294173 Score: 681
Period size: 155 Copynumber: 2.9 Consensus size: 154
1293713 GAAAAGGTGT
* * *
1293723 CCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 CCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAGTCCTGCTCTT
*
1293786 TGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGG
65 TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGG
* *
1293851 ACTGAAGGGTGAGAGAAGAGAGTAC
130 ACTGAAGGGTGAAAGAAGAGAGCAC
*
1293876 CCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGTCCTGCTCTTT
1 CCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGTCCTGCTCTTT
* *
1293941 GAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGG
66 GAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGG
* * **
1294006 ACTAAAGGGTGAAAGGAGAGAGCGT
130 ACTGAAGGGTGAAAGAAGAGAGCAC
* *
1294031 CATGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTG
1 CCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT---A--AAAAGA-GTCCTG
1294096 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTT
60 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTT
1294161 TGAGGACTGAAGG
125 TGAGGACTGAAGG
1294174 TGCCACCAAC
Statistics
Matches: 271, Mismatches: 18, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
153 17 0.06
154 48 0.18
155 119 0.44
158 1 0.00
160 66 0.24
161 20 0.07
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (154 bp):
CCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGTCCTGCTCTTT
GAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGGA
CTGAAGGGTGAAAGAAGAGAGCAC
Found at i:1294106 original size:100 final size:100
Alignment explanation
Indices: 1293933--1294113 Score: 301
Period size: 100 Copynumber: 1.8 Consensus size: 100
1293923 AAATGAGTCC
* *
1293933 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGCT
1293998 CTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCA
66 CTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCA
* *
1294033 TGCTCTTTGTGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGC
*
1294097 TCTTTGAGGACTGAAGG
65 TCTTTGAGGACTAAAGG
1294114 TGCCACCAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
100 72 0.96
101 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (100 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTCCTGCT
CTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCA
Found at i:1294132 original size:60 final size:60
Alignment explanation
Indices: 1294027--1294286 Score: 392
Period size: 60 Copynumber: 4.4 Consensus size: 60
1294017 AAAGGAGAGA
* *
1294027 GCGTCATGCTCTTTGTGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* *
1294088 ACGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1294148 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
*
1294207 GCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
1 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
*
1294261 GCGTCCTGCTCTTTGAGGACTAAAGG
1 GCGTCCTGCTCTTTGAGGACTGAAGG
1294287 GCGAAAGGAG
Statistics
Matches: 189, Mismatches: 9, Indels: 9
0.91 0.04 0.04
Matches are distributed among these distances:
54 28 0.15
55 1 0.01
59 57 0.30
60 85 0.45
61 18 0.10
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (60 bp):
GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:1294231 original size:119 final size:120
Alignment explanation
Indices: 1294027--1294261 Score: 402
Period size: 119 Copynumber: 2.0 Consensus size: 120
1294017 AAAGGAGAGA
*
1294027 GCGTCATGCTCTTTGTGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGT
1 GCGTCATGCTCTTTGAGGACTA-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGT
*
1294092 CCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG
65 CCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG
* *
1294148 GCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGT
1 GCGTCATGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGT
1294211 CCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
65 CCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1294262 CGTCCTGCTC
Statistics
Matches: 109, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
119 62 0.57
120 28 0.26
121 19 0.17
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (120 bp):
GCGTCATGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACGTC
CTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG
Found at i:1294339 original size:94 final size:94
Alignment explanation
Indices: 1294209--1294381 Score: 260
Period size: 94 Copynumber: 1.8 Consensus size: 94
1294199 AAGAAAAGGC
* *
1294209 GTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 GTCCTACTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
1294274 TGAGGACT-AAAGGGCGAAAGGAGATAGT
66 TGAGGACTGAAAGGGCGAAAGGAGATAGT
* * * *
1294302 GTCCTACTCTTTGAGGACTAGGAA-GTTCCACCAACTTGTGTGGGCTTTAAAATGTGTCCTGCTC
1 GTCCTACTCCTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
1294366 TTTGAGGACTGAAAGG
64 TTTGAGGACTGAAAGG
1294382 TGCCACCAAC
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
93 17 0.24
94 46 0.65
95 8 0.11
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (94 bp):
GTCCTACTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
TGAGGACTGAAAGGGCGAAAGGAGATAGT
Found at i:1294340 original size:428 final size:425
Alignment explanation
Indices: 1293454--1294568 Score: 1726
Period size: 428 Copynumber: 2.6 Consensus size: 425
1293444 AATGGAAAAG
* * *
1293454 GTGTCCTGCTCTTTGAGGACTA--AAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGT
1 GTGTCCTGCTCTTTGAGGACTAGGAAG-TGCCACCAACTTGTGTGGGCTTTAAAATGTGTCCTGC
* * *
1293517 TCTTTGAGGACTAGGAA-GTGCCACTAACTTGTGTGGGCTTT---A--A-AAGGCGTCTTGCTCT
65 TCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCT
* * *
1293575 TTGAGGACTAAAGGGTAAAAGGGGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACA
129 TTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACT
*
1293640 TGTGTGGGCTTTAAAA-G----GAGTCCTGCTCTTTGAGGACCGAAAGGTGCCACCAACTTGTGT
194 TGTGTGGGCTTTAAAAGGAAAAGAGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGT
*
1293700 GGGCTTTGAAATGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC
258 GGGCTTTGAAATGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC
* *
1293765 TTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAA
323 TTTGAAAGGCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT---A-GAA
* * *
1293830 AAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGAGAGAAGAGA
384 AAGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGAAGAGA
** *
1293872 GTACCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGAGTCCTGCT
1 GTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGTGTCCTGCT
1293937 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTT
66 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTT
* *
1294002 GAGGACTAAAGGGTGAAAGGAGAGAGCGTCATGCTCTTTGTGGACTAGGAAGTGCCACCAACTTG
131 GAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTG
1294067 TGTGGGCTTTAAAAGGAAAAGACGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGG
196 TGTGGGCTTTAAAAGGAAAAGA-GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGG
1294132 GCTTTGAAA-GGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTT
260 GCTTTGAAATGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTT
1294196 TAAAAGAAAAGGCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-G-AA
325 T----G-AAAGGCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAA
* *
1294259 AGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGGAGATA
385 AGGCGTCCTGCTCTTTGAGGACTAAAGGGCGAAAGAAGAGA
* *
1294300 GTGTCCTACTCTTTGAGGACTAGGAAGTTCCACCAACTTGTGTGGGCTTTAAAATGTGTCCTGCT
1 GTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGTGTCCTGCT
1294365 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTT
66 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTT
1294430 GAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTG
131 GAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTG
* *
1294495 TGTGGGCTTTAAAAGGAAAAGGTGTCCTAG-TCTTTGAGGATTGAAGGTGCCACCAACTTGTGTG
196 TGTGGGCTTTAAAAGGAAAA-GAGTCCT-GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTG
1294559 GGCTTTGAAA
259 GGCTTTGAAA
1294569 CGCGTCCTGC
Statistics
Matches: 643, Mismatches: 32, Indels: 34
0.91 0.05 0.05
Matches are distributed among these distances:
418 23 0.04
419 68 0.11
420 3 0.00
422 1 0.00
424 1 0.00
425 90 0.14
426 1 0.00
428 294 0.46
429 58 0.09
430 33 0.05
431 19 0.03
433 1 0.00
434 51 0.08
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (425 bp):
GTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAATGTGTCCTGCT
CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTT
GAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTG
TGTGGGCTTTAAAAGGAAAAGAGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGG
CTTTGAAATGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT
GAAAGGCGTCCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGT
CCTGCTCTTTGAGGACTAAAGGGCGAAAGAAGAGA
Found at i:1294367 original size:55 final size:55
Alignment explanation
Indices: 1294300--1294408 Score: 175
Period size: 55 Copynumber: 2.0 Consensus size: 55
1294290 AAAGGAGATA
* *
1294300 GTGTCCTACTCTTTGAGGACTAGGAA-GTTCCACCAACTTGTGTGGGCTTTAAAAT
1 GTGTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAT
*
1294355 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 GTGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1294409 GGAGAAGGCG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
54 3 0.06
55 47 0.94
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (55 bp):
GTGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAT
Found at i:1294622 original size:154 final size:153
Alignment explanation
Indices: 1294150--1294690 Score: 766
Period size: 154 Copynumber: 3.6 Consensus size: 153
1294140 AGGAAAAGGC
*
1294150 GTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCC
1 GTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGTGTCC
*
1294213 TGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
65 TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* *
1294278 GACTAAAGGGCGAAAGGAGATAGT
130 GACTAAAGGGTGAAAGGAGAGAGT
* * *
1294302 GTCCTACTCTTTGAGGACTAGGAAGTTCCACCAACTTGTGTGGGCTTT-----AAAATGTGTCCT
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGTGTCCT
1294362 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
66 GCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTCCTGCTC
*
1294427 TTTGAGGACTAAAGGGTGAAAGGAGAGAGC
124 TTTGAGGACTAAAGGGTGAAAGGAGAGAGT
1294457 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGTGTCC
* *
1294522 TAG-TCTTTGAGGATTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAACGCGTCCTGCTCTTTGA
65 T-GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
* *
1294586 GGACTAAAAGGTGAAAGAAGAGAGT
129 GGACTAAAGGGTGAAAGGAGAGAGT
* * *
1294611 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTATGTGGGCTTT-----TAAAGGAGTCCT
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGTGTCCT
1294671 GCTCTTTGAGGACTGAAGGT
66 GCTCTTTGAGGACTGAAGGT
1294691 CTAAAAGAGG
Statistics
Matches: 352, Mismatches: 20, Indels: 38
0.86 0.05 0.09
Matches are distributed among these distances:
147 1 0.00
148 51 0.14
149 27 0.08
152 18 0.05
153 23 0.07
154 92 0.26
155 89 0.25
160 27 0.08
161 23 0.07
162 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (153 bp):
GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGTGTCCT
GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
ACTAAAGGGTGAAAGGAGAGAGT
Found at i:1300909 original size:79 final size:79
Alignment explanation
Indices: 1300824--1301369 Score: 896
Period size: 79 Copynumber: 6.9 Consensus size: 79
1300814 AAAATAAAAT
* * *
1300824 CGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1300889 CCCCTCGAAAATAA
66 CCCCTCGAAAATAA
1300903 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
1300968 CCCCTCGGAAATAA
66 CCCCTCGAAAATAA
* * *
1300982 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTGAGAGATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1301047 CCCCTCGAAAATAA
66 CCCCTCGAAAATAA
* *
1301061 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
1301126 CCCCTCGGAAATAA
66 CCCCTCGAAAATAA
* * *
1301140 TGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
* *
1301205 CCCCTCGGAGATAA
66 CCCCTCGAAAATAA
* * *
1301219 TGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAAAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1301284 CCCC-CGAAAATAA
66 CCCCTCGAAAATAA
* * *
1301297 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1301362 CCCCTCGA
66 CCCCTCGA
1301370 TTAAAGGAAA
Statistics
Matches: 440, Mismatches: 26, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
78 70 0.16
79 370 0.84
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGAAAATAA
Found at i:1301389 original size:53 final size:51
Alignment explanation
Indices: 1301297--1301417 Score: 158
Period size: 53 Copynumber: 2.3 Consensus size: 51
1301287 CCGAAAATAA
*
1301297 CGGGGTTGGAGTAT-CCCCGATTATGAAAAATTGATGTTTT-AGAGATAAAAC
1 CGGGGTTGGAGTATCCCCCGATTA-GAAAAATTGATGTTTTCA-AAATAAAAC
*
1301348 CGGGGTTGGAGTATCCCCTCGATTA-AAGGAAATTGGTGTTTTCAAAATAAAAC
1 CGGGGTTGGAGTATCCCC-CGATTAGAA--AAATTGATGTTTTCAAAATAAAAC
1301401 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
1301418 TGAGTACAAG
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
51 16 0.25
52 3 0.05
53 43 0.68
54 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCCGATTAGAAAAATTGATGTTTTCAAAATAAAAC
Found at i:1303804 original size:30 final size:30
Alignment explanation
Indices: 1303720--1303953 Score: 243
Period size: 30 Copynumber: 7.7 Consensus size: 30
1303710 GGTAAAGTAA
* * * **
1303720 CCTTCTAAAAGTTCACGACTTAGTGGTGTC
1 CCTTCTCAAAGTCCACGACTCAGTGGCATC
* * * * *
1303750 CCTTCTTTAGAGTCTACAACTCAGTGGCATA
1 CCTTC-TCAAAGTCCACGACTCAGTGGCATC
*
1303781 CCTTCTCAAAGTCCACGACTCAGTGCCATC
1 CCTTCTCAAAGTCCACGACTCAGTGGCATC
* * * * *
1303811 CCATCTTAAAGTCCATGACTTAATGGCATC
1 CCTTCTCAAAGTCCACGACTCAGTGGCATC
* * *
1303841 CCTTTTCAAAGTCCATGACTTAGTGGCATC
1 CCTTCTCAAAGTCCACGACTCAGTGGCATC
*
1303871 CCTTTTTCAAAGTCCACGACTCAGTGGCATC
1 CC-TTCTCAAAGTCCACGACTCAGTGGCATC
*
1303902 CCTTCTCAAAGTCCACGACTCAGTGGCAAC
1 CCTTCTCAAAGTCCACGACTCAGTGGCATC
* *
1303932 CCTTTTTAAAGTCCACGACTCA
1 CCTTCTCAAAGTCCACGACTCA
1303954 ATGAATTCAG
Statistics
Matches: 171, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
30 122 0.71
31 49 0.29
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.29
Consensus pattern (30 bp):
CCTTCTCAAAGTCCACGACTCAGTGGCATC
Found at i:1303851 original size:60 final size:60
Alignment explanation
Indices: 1303720--1304053 Score: 283
Period size: 61 Copynumber: 5.4 Consensus size: 60
1303710 GGTAAAGTAA
* * * ** * * * * *
1303720 CCTTCTAAAAGTTCACGACTTAGTGGTGTCCCTTCTTTAGAGTCTACAACTCAGTGGCATA
1 CCTTCTCAAAGTCCACGACTCAGTGGCATCCCTT-TTTAAAGTCCACGACTCAATGGCATC
* * * * *
1303781 CCTTCTCAAAGTCCACGACTCAGTGCCATCCCATCTTAAAGTCCATGACTTAATGGCATC
1 CCTTCTCAAAGTCCACGACTCAGTGGCATCCCTTTTTAAAGTCCACGACTCAATGGCATC
* * * *
1303841 CCTTTTCAAAGTCCATGACTTAGTGGCATCCCTTTTTCAAAGTCCACGACTCAGTGGCATC
1 CCTTCTCAAAGTCCACGACTCAGTGGCATCCCTTTTT-AAAGTCCACGACTCAATGGCATC
*
1303902 CCTTCTCAAAGTCCACGACTCAGTGGCAACCCTTTTTAAAGTCCACGACTCAATGAATTCAGTGG
1 CCTTCTCAAAGTCCACGACTCAGTGGCATCCCTTTTTAAAGTCCACGACTC-----A---A-TGG
1303967 CATC
57 CATC
* * * * *** * *
1303971 CCTTCTCAAAGTCCACAATTTAGTGGCAT-CATTTTTTTGGTCCATGACTCAATGGCATT
1 CCTTCTCAAAGTCCACGACTCAGTGGCATCCCTTTTTAAAGTCCACGACTCAATGGCATC
* *
1304030 GCTTATCAAAGTCCACGACTCAGT
1 CCTTCTCAAAGTCCACGACTCAGT
1304054 AGTGTAGACA
Statistics
Matches: 219, Mismatches: 44, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
59 25 0.11
60 64 0.29
61 80 0.37
63 1 0.00
65 1 0.00
68 16 0.07
69 32 0.15
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (60 bp):
CCTTCTCAAAGTCCACGACTCAGTGGCATCCCTTTTTAAAGTCCACGACTCAATGGCATC
Found at i:1303885 original size:91 final size:90
Alignment explanation
Indices: 1303772--1303951 Score: 252
Period size: 91 Copynumber: 2.0 Consensus size: 90
1303762 TCTACAACTC
* * *
1303772 AGTGGCATACCTTCTCAAAGTCCACGACTCAGTGCCATCCCATCTTAAAGTCCATGACTTAATGG
1 AGTGGCATACCTTCTCAAAGTCCACGACTCAGTGCCATCCCATCTCAAAGTCCACGACTCAATGG
* *
1303837 CATCCCTTTTCAAAGTCCATGACTT
66 CAACCCTTTTCAAAGTCCACGACTT
* * * * *
1303862 AGTGGCATCCCTTTTTCAAAGTCCACGACTCAGTGGCATCCCTTCTCAAAGTCCACGACTCAGTG
1 AGTGGCATACC-TTCTCAAAGTCCACGACTCAGTGCCATCCCATCTCAAAGTCCACGACTCAATG
*
1303927 GCAACCCTTTTTAAAGTCCACGACT
65 GCAACCCTTTTCAAAGTCCACGACT
1303952 CAATGAATTC
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
90 10 0.13
91 68 0.87
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (90 bp):
AGTGGCATACCTTCTCAAAGTCCACGACTCAGTGCCATCCCATCTCAAAGTCCACGACTCAATGG
CAACCCTTTTCAAAGTCCACGACTT
Found at i:1303941 original size:121 final size:121
Alignment explanation
Indices: 1303727--1303956 Score: 318
Period size: 121 Copynumber: 1.9 Consensus size: 121
1303717 TAACCTTCTA
* ** * *
1303727 AAAGTTCACGACTTAGTGGTGTCCCTTCTTTAGAGTCTACAACTCAGTGGCATACCTTCTCAAAG
1 AAAGTCCACGACTTAGTGGCATCCCTTCTTTAAAGTCCACAACTCAGTGGCATACCTTCTCAAAG
* * *
1303792 TCCACGACTCAGTGCCATCCCATCTTAAAGTCCATGACTTAATGGCATCCCTTTTC
66 TCCACGACTCAGTGCCAACCCATCTTAAAGTCCACGACTCAATGGCATCCCTTTTC
* * *
1303848 AAAGTCCATGACTTAGTGGCATCCCTT-TTTCAAAGTCCACGACTCAGTGGCATCCCTTCTCAAA
1 AAAGTCCACGACTTAGTGGCATCCCTTCTTT-AAAGTCCACAACTCAGTGGCATACCTTCTCAAA
* * *
1303912 GTCCACGACTCAGTGGCAACCCTTTTTAAAGTCCACGACTCAATG
65 GTCCACGACTCAGTGCCAACCCATCTTAAAGTCCACGACTCAATG
1303957 AATTCAGTGG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 3 0.03
121 91 0.97
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (121 bp):
AAAGTCCACGACTTAGTGGCATCCCTTCTTTAAAGTCCACAACTCAGTGGCATACCTTCTCAAAG
TCCACGACTCAGTGCCAACCCATCTTAAAGTCCACGACTCAATGGCATCCCTTTTC
Found at i:1304007 original size:69 final size:68
Alignment explanation
Indices: 1303891--1304024 Score: 178
Period size: 69 Copynumber: 2.0 Consensus size: 68
1303881 AGTCCACGAC
* *
1303891 TCAGTGGCATCCCTTCTCAAAGTCCACGACTCAGTGGCAACCCTTTTTAAAGTCCACGACTCAAT
1 TCAGTGGCATCCCTTCTCAAAGTCCACAACTCAGTGGCAACACTTTTT-AAGTCCACGACTCAAT
1303956 GAAT
65 GAAT
* * * * ** *
1303960 TCAGTGGCATCCCTTCTCAAAGTCCACAATTTAGTGGCATCATTTTTTTGGTCCATGACTCAATG
1 TCAGTGGCATCCCTTCTCAAAGTCCACAACTCAGTGGCAACACTTTTTAAGTCCACGACTCAATG
1304025 GCATTGCTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
68 14 0.25
69 42 0.75
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (68 bp):
TCAGTGGCATCCCTTCTCAAAGTCCACAACTCAGTGGCAACACTTTTTAAGTCCACGACTCAATG
AAT
Found at i:1305015 original size:165 final size:164
Alignment explanation
Indices: 1304705--1305189 Score: 539
Period size: 166 Copynumber: 2.9 Consensus size: 164
1304695 ACTTGCAAAA
* * * *
1304705 TTTTCTACTCCGTAAATATTTTTGGAGGGATTT-T-CTCAGTTTTTAATTTTTAAAATTCATCAA
1 TTTTCTACTCTGTAAAT-TTTTTAGAGGGATTTCTCCT-AGTTTTTAATTTATAAAATCCATCAA
** ** * * * * *
1304768 AT-TATACGATTTAACTCACACTAAATCAATTTTTAAAAATTCATTCATCTTCATGAGTTTTTGA
64 ATAT-TATTATTTATTTTATATTAAATCAGTTTTTAAAAATTCATTCAT-TTCATGAGTTTTTAA
*
1304832 A-TTTTTCATTGAAATTCTCTTATTTCTAAAATACGGAT
127 ATTTTTTCATTG-AATTCTCTTATTTCCAAAATACGGAT
* * *
1304870 TTTTCTACTCTGTAAATTTTTTAGGGGGCATTTTTCCTAGTTTTTAATTTATAGAATCCATCAAA
1 TTTTCTACTCTGTAAATTTTTTAGAGGG-ATTTCTCCTAGTTTTTAATTTATAAAATCCATCAAA
* *
1304935 TATTATTATTTATTTTATATTAAATTAGTTTTCAAAAATTCATTCATTTCATGAGTTTTTAAATT
65 TATTATTATTTATTTTATATTAAATCAGTTTTTAAAAATTCATTCATTTCATGAGTTTTTAAATT
* * *
1305000 TTTTCGTTGAATTCTCCCTATTTCCAAAATATGGAT
130 TTTTCATTGAATTCT-CTTATTTCCAAAATACGGAT
* * * * * * *
1305036 TTTTTTGCTTTGTAAATTTTTTTGAGGGATTTCTCTTGGTTTTTAATTTTTAAAATCCATCAAAT
1 TTTTCTACTCTGTAAATTTTTTAGAGGGATTTCTCCTAGTTTTTAATTTATAAAATCCATCAAAT
* * * *
1305101 ATTATTATTTATTTTATATTAAATCAGTTTTTAAAAATTTATTTATTTTCATGAGTTTTTTATTT
66 ATTATTATTTATTTTATATTAAATCAGTTTTTAAAAATTCATTCA-TTTCATGAGTTTTTAAATT
* *
1305166 TTTTCCTTGATATTCCCTT-TTTCC
130 TTTTCATTGA-ATTCTCTTATTTCC
1305190 TAGAAAACTG
Statistics
Matches: 272, Mismatches: 40, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
164 9 0.03
165 119 0.44
166 137 0.50
167 7 0.03
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.51
Consensus pattern (164 bp):
TTTTCTACTCTGTAAATTTTTTAGAGGGATTTCTCCTAGTTTTTAATTTATAAAATCCATCAAAT
ATTATTATTTATTTTATATTAAATCAGTTTTTAAAAATTCATTCATTTCATGAGTTTTTAAATTT
TTTCATTGAATTCTCTTATTTCCAAAATACGGAT
Found at i:1307042 original size:34 final size:34
Alignment explanation
Indices: 1306999--1307084 Score: 172
Period size: 34 Copynumber: 2.5 Consensus size: 34
1306989 TATGATGTAT
1306999 CGATACATGAATAGTGATGAACAGTGATTTTTAA
1 CGATACATGAATAGTGATGAACAGTGATTTTTAA
1307033 CGATACATGAATAGTGATGAACAGTGATTTTTAA
1 CGATACATGAATAGTGATGAACAGTGATTTTTAA
1307067 CGATACATGAATAGTGAT
1 CGATACATGAATAGTGAT
1307085 ACGTGAACAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.31
Consensus pattern (34 bp):
CGATACATGAATAGTGATGAACAGTGATTTTTAA
Found at i:1307119 original size:21 final size:22
Alignment explanation
Indices: 1307082--1307142 Score: 106
Period size: 21 Copynumber: 2.8 Consensus size: 22
1307072 CATGAATAGT
*
1307082 GATACGTGAACAGTGATGTATC
1 GATACATGAACAGTGATGTATC
1307104 GATACATGAA-AGTGATGTATC
1 GATACATGAACAGTGATGTATC
1307125 GATACATGAACAGTGATG
1 GATACATGAACAGTGATG
1307143 AATAGTGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
21 21 0.57
22 16 0.43
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.26
Consensus pattern (22 bp):
GATACATGAACAGTGATGTATC
Found at i:1307248 original size:53 final size:53
Alignment explanation
Indices: 1307184--1307320 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
1307174 CTACTACCAA
1307184 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
* **
1307237 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
1307290 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
1307321 TATGCAATCT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
Found at i:1307353 original size:20 final size:20
Alignment explanation
Indices: 1307290--1307360 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
1307280 GCCAATGTCC
**
1307290 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
1307310 TGTATCGATAC-TATGCAATC
1 TGTATCGATACATAT-TAATG
1307330 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
1307350 TGTATCGATAC
1 TGTATCGATAC
1307361 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:1307426 original size:21 final size:21
Alignment explanation
Indices: 1307400--1307440 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1307390 GTCAACCTTG
1307400 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
1307421 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
1307441 TTTTACATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:1312860 original size:36 final size:36
Alignment explanation
Indices: 1312819--1312921 Score: 84
Period size: 36 Copynumber: 3.2 Consensus size: 36
1312809 CCTTTTTCTT
1312819 TCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCC
1 TCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCC
* * * *
1312855 TCAAAG---A-GC-AG--GAT-GCTTTTTCT--T-T
1 TCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCC
*
1312880 TCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCC
1 TCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCC
1312916 TCAAAG
1 TCAAAG
1312922 AGCAGGACAC
Statistics
Matches: 47, Mismatches: 9, Indels: 22
0.60 0.12 0.28
Matches are distributed among these distances:
25 6 0.13
26 1 0.02
28 9 0.19
29 3 0.06
30 2 0.04
31 2 0.04
32 3 0.06
33 8 0.17
35 1 0.02
36 12 0.26
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (36 bp):
TCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCC
Found at i:1313211 original size:27 final size:27
Alignment explanation
Indices: 1313181--1313263 Score: 64
Period size: 27 Copynumber: 3.0 Consensus size: 27
1313171 TTGGTGGCAT
1313181 TTTCCAGTCCTCAAAGAGTAGGACACC
1 TTTCCAGTCCTCAAAGAGTAGGACACC
* * * * *
1313208 TTTCAAAGCCCACACAAGTTGGT-GG-CA-T
1 TTTC-CAGTCCTCA-AAG--AGTAGGACACC
1313236 TTTCCAGTCCTCAAAGAGTAGGACACC
1 TTTCCAGTCCTCAAAGAGTAGGACACC
1313263 T
1 T
1313264 CTCAAAGCCC
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
24 2 0.05
25 2 0.05
26 5 0.13
27 11 0.28
28 10 0.26
29 5 0.13
30 2 0.05
31 2 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (27 bp):
TTTCCAGTCCTCAAAGAGTAGGACACC
Found at i:1313552 original size:27 final size:27
Alignment explanation
Indices: 1313522--1313606 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
1313512 TTGGTGGCAT
1313522 TTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCCAGTCCTCAAAGAGCAGGACACC
* * * * ** *
1313549 TTTCAAAGCCCACACAAGTTGGTGG-CA-T
1 TTTC-CAGTCCTCA-AAG-AGCAGGACACC
1313577 TTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCCAGTCCTCAAAGAGCAGGACACC
1313604 TTT
1 TTT
1313607 TAAAGCCCAC
Statistics
Matches: 39, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.13
27 13 0.33
28 10 0.26
29 5 0.13
30 3 0.08
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (27 bp):
TTTCCAGTCCTCAAAGAGCAGGACACC
Found at i:1313795 original size:55 final size:55
Alignment explanation
Indices: 1312816--1313783 Score: 1387
Period size: 55 Copynumber: 17.3 Consensus size: 55
1312806 ACGCCTTTTT
* *
1312816 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGATGCTTTTTC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C----AC
*
1312877 TTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
*
1312932 CTCTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
*
1312987 CTCTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1313042 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
*
1313097 CTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTT--AGTCCCCAAAGAGCAGGACAC
1 CT-TTCAAAGCCCACACAAGTTGGTGGCA--TTTTCCAGTCCTCAAAGAGCAGGACAC
*
1313152 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
*
1313207 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
* * * * *
1313262 CTCTCAAAGCCCACACAAGTTGGTGGCACCTTT-CA-TCCCCAAAGAGCAAGACGC
1 CTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACAC
* * *
1313316 CTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGATGCCTTC
1 CTT-T-C----AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA------C
*
1313381 TC
54 AC
* * **
1313383 CTTTTAAAGCCCACACAAGTTGGTAGCATCCTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
*
1313438 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGTAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1313493 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1313548 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
*
1313603 CTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
* *
1313658 CTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGC
1 CT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACAC
* * *
1313713 CTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGTAGGACGC
1 CT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACAC
1313768 CTTTCAAAGCCCACAC
1 CTTTCAAAGCCCACAC
1313784 GTGGTTGTGG
Statistics
Matches: 844, Mismatches: 39, Indels: 54
0.90 0.04 0.06
Matches are distributed among these distances:
53 4 0.00
54 21 0.02
55 665 0.79
56 11 0.01
57 4 0.00
59 4 0.00
60 25 0.03
61 104 0.12
66 1 0.00
67 5 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (55 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
Found at i:1316724 original size:68 final size:68
Alignment explanation
Indices: 1316615--1316749 Score: 243
Period size: 68 Copynumber: 2.0 Consensus size: 68
1316605 CGACTCAGCT
* *
1316615 TGTACCAGGATCTGCTATACCGTAATCATTGGTACTTTGAGTTCTTCGACATTCCTTACAGTCTC
1 TGTACCAGGATCTGCCATACCGTAATCATTGGTACTTTGAGTTCTTCGACATTCCTTACAATCTC
1316680 ACC
66 ACC
*
1316683 TGTACTAGGATCTGCCATACCGTAATCATTGGTACTTTGAGTTCTTCGACATTCCTTACAATCTC
1 TGTACCAGGATCTGCCATACCGTAATCATTGGTACTTTGAGTTCTTCGACATTCCTTACAATCTC
1316748 AC
66 AC
1316750 AATCCTATTC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.36
Consensus pattern (68 bp):
TGTACCAGGATCTGCCATACCGTAATCATTGGTACTTTGAGTTCTTCGACATTCCTTACAATCTC
ACC
Found at i:1317399 original size:19 final size:19
Alignment explanation
Indices: 1317375--1317442 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1317365 AATTCAACGA
1317375 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1317394 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1317409 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1317426 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1317443 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1317413 original size:32 final size:32
Alignment explanation
Indices: 1317377--1317439 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1317367 TTCAACGATT
*
1317377 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1317409 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1317440 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1317414 original size:13 final size:13
Alignment explanation
Indices: 1317396--1317420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1317386 ACATAAGTTT
1317396 TGTATCGATACAA
1 TGTATCGATACAA
1317409 TGTATCGATACA
1 TGTATCGATACA
1317421 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1317500 original size:13 final size:13
Alignment explanation
Indices: 1317482--1317507 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1317472 CATTTTTCTG
1317482 TGTATCGATACAT
1 TGTATCGATACAT
1317495 TGTATCGATACAT
1 TGTATCGATACAT
1317508 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Done.