genome.fa.s1650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1650
Parameters: 2 7 7 80 10 50 1000
Length:  61127

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52--155	28	3.7	28	90	0	163	26	33	11	27	1.91
63--2954	28	100.8	28	86	4	3519	27	32	18	21	1.97
53--3005	257	11.4	254	85	5	3598	27	32	18	21	1.97
4126--4391	58	4.6	57	85	5	304	30	28	17	23	1.97
4128--4391	30	9.1	30	86	7	314	30	28	17	23	1.97
4380--4591	52	4.2	52	75	13	199	24	24	16	34	1.95
4395--4484	43	2.1	43	93	0	153	26	24	17	31	1.97
5401--5468	33	2.1	33	88	0	100	33	11	14	39	1.83
5422--5446	13	1.9	13	100	0	50	36	16	16	32	1.90
5509--5533	13	1.9	13	100	0	50	32	16	16	36	1.90
5522--5670	52	2.9	51	91	4	244	32	19	17	30	1.95
8166--8277	1	112.0	1	73	0	89	86	11	1	0	0.64
8172--8277	22	4.8	21	82	13	124	85	12	1	0	0.67
8169--8277	10	10.6	10	80	13	123	86	11	1	0	0.66
9711--10092	58	6.6	59	84	6	458	31	27	17	23	1.97
9711--10090	88	4.4	88	92	1	561	31	27	17	23	1.97
9711--10092	30	13.1	30	85	8	468	31	27	17	23	1.97
9711--10091	118	3.3	115	87	3	446	31	27	17	23	1.97
10081--10292	52	4.2	52	74	13	199	24	24	16	34	1.95
10096--10185	43	2.1	43	93	0	153	26	24	17	31	1.97
11101--11158	20	3.0	20	84	2	73	29	10	13	46	1.77
15276--15329	22	2.5	22	96	3	101	18	11	9	61	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19334--19362	11	2.5	12	88	11	51	6	31	0	62	1.22
22581--22660	11	7.4	11	83	12	85	32	0	0	67	0.91
22581--22645	23	2.9	23	86	6	80	33	0	0	66	0.92
22587--22726	23	6.0	24	66	20	73	35	2	0	62	1.10
22587--22751	34	4.6	36	70	21	114	35	3	0	60	1.17
22612--22785	76	2.3	75	82	9	205	37	2	1	58	1.20
23439--23472	15	2.2	16	89	5	52	58	2	5	32	1.37
25606--25645	19	2.1	19	90	0	62	62	0	12	25	1.30
26447--26497	17	3.0	17	72	11	50	49	1	0	49	1.12
26442--26492	28	1.9	25	84	11	66	54	0	0	45	0.99
26814--26855	2	21.0	2	100	0	84	50	0	0	50	1.00
32054--32104	12	4.2	12	79	0	57	41	1	27	29	1.67
34097--34131	9	3.9	9	88	0	52	34	8	34	22	1.85
34051--34209	81	2.0	81	100	0	318	29	12	32	25	1.93
34691--34729	13	3.0	13	96	0	69	38	5	15	41	1.69
38037--38095	24	2.4	26	75	18	72	59	0	0	40	0.97
38276--38329	29	2.0	28	82	13	69	38	0	0	61	0.96
41157--41193	2	18.5	2	100	0	74	48	0	0	51	1.00
43240--43290	21	2.3	22	86	6	68	58	0	0	41	0.98
45790--45843	20	2.8	19	81	8	65	42	1	1	53	1.22
47114--47206	27	3.7	25	71	25	72	59	1	2	37	1.17
47156--47217	19	3.4	19	80	17	78	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47164--47218	2	29.0	2	75	10	53	56	0	0	43	0.99
47151--47217	28	2.4	28	85	9	84	59	1	0	38	1.06
47330--47360	14	2.2	14	94	0	53	0	9	0	90	0.46
48395--48426	2	16.0	2	100	0	64	50	0	0	50	1.00
51431--51458	8	3.5	8	100	0	56	46	0	0	53	1.00
51486--51546	11	5.5	11	84	5	70	32	1	0	65	1.02
51492--51550	23	2.5	24	83	10	77	33	1	0	64	1.04
51513--51550	12	3.2	12	88	11	60	34	0	0	65	0.93
51531--51671	76	1.9	73	82	4	174	34	4	3	56	1.38
51647--51709	32	2.0	32	81	9	76	44	0	0	55	0.99
53011--53071	9	6.7	9	73	17	54	65	0	0	34	0.93
53010--53069	29	2.1	28	84	3	75	65	0	0	35	0.93
53015--53058	21	2.2	20	88	8	63	70	0	0	29	0.88
53013--53059	20	2.4	19	80	13	60	68	0	0	31	0.90
53674--53755	26	2.9	27	82	15	80	36	1	1	60	1.12
53675--53755	13	6.1	13	69	18	51	37	1	1	60	1.13
53680--53755	15	4.9	15	72	22	52	36	1	1	60	1.13
55265--55379	34	3.4	34	75	3	97	54	3	0	40	1.23
55689--55733	2	22.5	2	100	0	90	48	0	0	51	1.00
56262--56328	23	2.9	23	76	12	59	62	1	0	35	1.04
56271--56328	11	5.2	11	78	13	57	67	1	0	31	1.01
56646--56692	23	2.0	23	100	0	94	34	8	31	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59887--59961	22	3.2	24	64	17	68	50	6	16	26	1.69
59870--59962	45	2.1	45	100	0	186	52	8	12	25	1.68

Tables:   1

The End!