Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1652
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 199341
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
File 1 of 4
Found at i:418 original size:21 final size:21
Alignment explanation
Indices: 390--445 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
380 ATGGATATGT
390 ACCCTAAACCTTAAATATTAA
1 ACCCTAAACCTTAAATATTAA
* *
411 ACCTTAAA-CTCTAAATCTTAA
1 ACCCTAAACCT-TAAATATTAA
*
432 ACCCTAAACTTTAA
1 ACCCTAAACCTTAA
446 GCTCAAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 26 0.90
22 1 0.03
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (21 bp):
ACCCTAAACCTTAAATATTAA
Found at i:425 original size:14 final size:14
Alignment explanation
Indices: 393--445 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
383 GATATGTACC
393 CTAAACCTTAAA-T
1 CTAAACCTTAAACT
*
406 ATTAAACCTTAAACT
1 -CTAAACCTTAAACT
* *
421 CTAAATCTTAAACC
1 CTAAACCTTAAACT
*
435 CTAAACTTTAA
1 CTAAACCTTAA
446 GCTCAAAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 31 0.97
15 1 0.03
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (14 bp):
CTAAACCTTAAACT
Found at i:1866 original size:19 final size:19
Alignment explanation
Indices: 1841--1894 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
1831 ATTTTTACAA
*
1841 ATTGTATCGATATATAATT
1 ATTGTATCGATATATAATC
* * *
1860 TTTGTATCGATACATTTATC
1 ATTGTATCGATATA-TAATC
1880 ATTGTATCGATATAT
1 ATTGTATCGATATAT
1895 TTGGGTATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.48
Consensus pattern (19 bp):
ATTGTATCGATATATAATC
Found at i:2399 original size:15 final size:12
Alignment explanation
Indices: 2365--2393 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
2355 CCATCTACAT
2365 TTCCAGCAACAC
1 TTCCAGCAACAC
2377 TTCCAGCAACAC
1 TTCCAGCAACAC
2389 TTCCA
1 TTCCA
2394 CCAGCATCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.41, G:0.07, T:0.21
Consensus pattern (12 bp):
TTCCAGCAACAC
Found at i:3576 original size:20 final size:21
Alignment explanation
Indices: 3546--3584 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
3536 CTATATTTTC
3546 AAATATGTATCGATACATTAA
1 AAATATGTATCGATACATTAA
3567 AAAT-TGTATCGATACATT
1 AAATATGTATCGATACATT
3585 TACACGGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
AAATATGTATCGATACATTAA
Found at i:11501 original size:20 final size:20
Alignment explanation
Indices: 11475--11600 Score: 90
Period size: 20 Copynumber: 5.8 Consensus size: 20
11465 AAAAAGACAG
*
11475 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
11495 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
*
11515 AATGTATCAATACATCTGCGTAAAAAGATA
1 AATGTATCGATACAT-T-C------A-A-A
*
11545 GAATGTATCGATACATTCATA
1 -AATGTATCGATACATTCAAA
* *
11566 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
11586 AATGTATCGATACAT
1 AATGTATCGATACAT
11601 CTGGGTAAAA
Statistics
Matches: 83, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
20 61 0.73
21 2 0.02
23 1 0.01
28 1 0.01
29 2 0.02
30 2 0.02
31 14 0.17
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:11541 original size:71 final size:71
Alignment explanation
Indices: 11425--11652 Score: 359
Period size: 71 Copynumber: 3.2 Consensus size: 71
11415 TTTTAACTAG
**
11425 ATGTATCGATACATT-ATTCAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACA
1 ATGTATCGATACATTGA-AAAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACA
11489 TTCATAC
65 TTCATAC
* * *
11496 ATGTATCGATACATTGAAAAATGTATCAATACATCTGCGTAAAAAGATAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACAT
11561 TCATAC
66 TCATAC
* *
11567 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGGACAAAATGTATTGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA-GACAGAATGTATCGATACA
11632 TTCATAC
65 TTCATAC
*
11639 ATGTATCAATACAT
1 ATGTATCGATACAT
11653 CTGGGTAAAA
Statistics
Matches: 144, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
71 107 0.74
72 37 0.26
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (71 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACAT
TCATAC
Found at i:12749 original size:28 final size:28
Alignment explanation
Indices: 12708--12779 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
12698 TTCTCAAAGC
* *
12708 CCACTAGTCAGTGGCACCTCTTCGAAGT
1 CCACAAGTTAGTGGCACCTCTTCGAAGT
* *
12736 CCACAAGTTAGTGGTATCTCTTCGAAGT
1 CCACAAGTTAGTGGCACCTCTTCGAAGT
12764 CCACAA-TTAGTGGCAC
1 CCACAAGTTAGTGGCAC
12780 TTGCTGTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (28 bp):
CCACAAGTTAGTGGCACCTCTTCGAAGT
Found at i:12991 original size:32 final size:31
Alignment explanation
Indices: 12950--13046 Score: 140
Period size: 32 Copynumber: 3.0 Consensus size: 31
12940 CCCAATGGAG
*
12950 AACCCTTTTTAAAGCCCACAAAAGCTGGTGGC
1 AACCCTTTTTAAAGCCCACACAAG-TGGTGGC
12982 AACCCTTTTTAAAGCCCACACAAGTCGGTGGC
1 AACCCTTTTTAAAGCCCACACAAGT-GGTGGC
**
13014 AACCCTTTCAAAAGCCCACACAAGTTGGTGGC
1 AACCCTTTTTAAAGCCCACACAAG-TGGTGGC
13046 A
1 A
13047 TCTCCTTCTA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
31 1 0.02
32 58 0.97
33 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (31 bp):
AACCCTTTTTAAAGCCCACACAAGTGGTGGC
Found at i:13327 original size:52 final size:52
Alignment explanation
Indices: 13252--13708 Score: 309
Period size: 52 Copynumber: 8.7 Consensus size: 52
13242 CATTGAATTA
* * * * *
13252 GCCTTGAATTAGCATATTGGCACCTTTATCATCTTTAAGTCTAATGTTGTTA
1 GCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAACGTTGCTG
* * *
13304 GCCTTGAATCAGCACATTGGCACCTTCT-TC-T-TTCTCAAGTCCAACATCGCTG
1 GCCTTGAATCAGCATATTGGCACCTT-TATCATCTT-T-AAGTCCAACGTTGCTG
** * * *
13356 GCCTTGAATCAGCATATTGGCATATTCATCATCTTTAAGCCCAACGTTGTTG
1 GCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAACGTTGCTG
* *
13408 ACCTTGAATCAGCACT-TTGGCACTCTTCTCACCTTTATCATCTTTAAGTCCAATGTTGCTG
1 GCCTTGAATCAGCA-TATTGG---------CACCTTTATCATCTTTAAGTCCAACGTTGCTG
* * * * * *
13469 GCCTTAAATCAGTATATTGGCACCTTTTTC-T-TTCTCAAGTCTAACATCGCTG
1 GCCTTGAATCAGCATATTGGCACCTTTATCATCTT-T-AAGTCCAACGTTGCTG
* *
13521 GCTTTGAATCAGCATATTGGCACCTTTATCATC-----GTCCAATGTTGCTAG
1 GCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAACGTTGCT-G
* * * * *
13569 G-CTTAAATCAGCAAATTGGCACCTTCT-T-AT-TTCTCAAGTCTAACATCGCTG
1 GCCTTGAATCAGCATATTGGCACCTT-TATCATCTT-T-AAGTCCAACGTTGCTG
* * *
13620 GCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGCCCAATGTTGTTG
1 GCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAACGTTGCTG
* *
13672 ACCTTGAATCAGCACT-TTGGCA-CTCTTCTCATCTTTA
1 GCCTTGAATCAGCA-TATTGGCACCT-TTATCATCTTTA
13709 TCGTCTTTAA
Statistics
Matches: 313, Mismatches: 56, Indels: 72
0.71 0.13 0.16
Matches are distributed among these distances:
46 2 0.01
47 31 0.10
48 3 0.01
50 4 0.01
51 9 0.03
52 209 0.67
53 9 0.03
54 4 0.01
60 1 0.00
61 41 0.13
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (52 bp):
GCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAACGTTGCTG
Found at i:13613 original size:99 final size:99
Alignment explanation
Indices: 13455--13652 Score: 335
Period size: 99 Copynumber: 2.0 Consensus size: 99
13445 TCATCTTTAA
* * * *
13455 GTCCAATGTTGCTGGCCTTAAATCAGTATATTGGCACCTTTTTCTTTCTCAAGTCTAACATCGCT
1 GTCCAATGTTGCTGGCCTTAAATCAGCAAATTGGCACCTTCTTATTTCTCAAGTCTAACATCGCT
*
13520 GGCTTTGAATCAGCATATTGGCACCTTTATCATC
66 GGCCTTGAATCAGCATATTGGCACCTTTATCATC
13554 GTCCAATGTTGCTAGG-CTTAAATCAGCAAATTGGCACCTTCTTATTTCTCAAGTCTAACATCGC
1 GTCCAATGTTGCT-GGCCTTAAATCAGCAAATTGGCACCTTCTTATTTCTCAAGTCTAACATCGC
13618 TGGCCTTGAATCAGCATATTGGCACCTTTATCATC
65 TGGCCTTGAATCAGCATATTGGCACCTTTATCATC
13653 TTTAAGCCCA
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
99 91 0.98
100 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (99 bp):
GTCCAATGTTGCTGGCCTTAAATCAGCAAATTGGCACCTTCTTATTTCTCAAGTCTAACATCGCT
GGCCTTGAATCAGCATATTGGCACCTTTATCATC
Found at i:18182 original size:20 final size:21
Alignment explanation
Indices: 18143--18188 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
18133 TTCTATAATT
18143 TGTATCGATACAACAAGTGAA
1 TGTATCGATACAACAAGTGAA
*
18164 TGTATCGATA-AATAAGTGAA
1 TGTATCGATACAACAAGTGAA
18184 TGTAT
1 TGTAT
18189 TAATAGATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (21 bp):
TGTATCGATACAACAAGTGAA
Found at i:18417 original size:52 final size:50
Alignment explanation
Indices: 18253--18440 Score: 227
Period size: 52 Copynumber: 3.7 Consensus size: 50
18243 TCTGGAAAAA
* * * *
18253 AAATGTATCGATACATT-TTTATTGTATCAATACATTCTATGTTTGATCC-
1 AAATGTATCGATACATTCTTCATTGTATCAATACATTTTGTTTTTGA-CCT
* *
18302 AAATGTATTGATACATTCTTCATTGTATCAATACATTCTTGTTTTTGACTT
1 AAATGTATCGATACATTCTTCATTGTATCAATACATT-TTGTTTTTGACCT
* * * *
18353 AAATGGATCGATACATTATTCATTATATTAATACATTTTGGGTTTTTGACCT
1 AAATGTATCGATACATTCTTCATTGTATCAATACATTTT--GTTTTTGACCT
*
18405 AAATGTATCGATACATTCTTCAATGTATCAATACAT
1 AAATGTATCGATACATTCTTCATTGTATCAATACAT
18441 CTAGTTAAAT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
49 16 0.14
50 21 0.18
51 39 0.33
52 41 0.35
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (50 bp):
AAATGTATCGATACATTCTTCATTGTATCAATACATTTTGTTTTTGACCT
Found at i:21839 original size:32 final size:32
Alignment explanation
Indices: 21802--21942 Score: 99
Period size: 32 Copynumber: 4.4 Consensus size: 32
21792 CTTCGAAGAT
21802 TGAGGTTGGTAAGCGCCTTGCTCTTTAAGGAC
1 TGAGGTTGGTAAGCGCCTTGCTCTTTAAGGAC
* * * * *
21834 AGAGGTAGGTAAGTG-TTCTGCTCTTTGAGGAC
1 TGAGGTTGGTAAGCGCCT-TGCTCTTTAAGGAC
* * * * *
21866 TGAGGTTAGTAAGTGCCTTACTTTTTATGGAC
1 TGAGGTTGGTAAGCGCCTTGCTCTTTAAGGAC
** * *
21898 TG-GGTTTGGTAAGCATCTTACTCCTTGAA-GAC
1 TGAGG-TTGGTAAGCGCCTTGCT-CTTTAAGGAC
*
21930 TAAGGTTGGTAAG
1 TGAGGTTGGTAAG
21943 TGTTCTACTC
Statistics
Matches: 83, Mismatches: 21, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
31 3 0.04
32 74 0.89
33 6 0.07
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.34
Consensus pattern (32 bp):
TGAGGTTGGTAAGCGCCTTGCTCTTTAAGGAC
Found at i:21870 original size:64 final size:64
Alignment explanation
Indices: 21754--21884 Score: 154
Period size: 64 Copynumber: 2.0 Consensus size: 64
21744 CAATTAACAT
* * * * * * *
21754 CTTGCTCTTTATGGACTGATGTAAGTAAGCGTTTTGTTCTTCGAAGATTGAGGTTGGTAAGCGC
1 CTTGCTCTTTAAGGACAGAGGTAAGTAAGCGTTCTGCTCTTCGAAGACTGAGGTTAGTAAGCGC
* * * * *
21818 CTTGCTCTTTAAGGACAGAGGTAGGTAAGTGTTCTGCTCTTTGAGGACTGAGGTTAGTAAGTGC
1 CTTGCTCTTTAAGGACAGAGGTAAGTAAGCGTTCTGCTCTTCGAAGACTGAGGTTAGTAAGCGC
21882 CTT
1 CTT
21885 ACTTTTTATG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.36
Consensus pattern (64 bp):
CTTGCTCTTTAAGGACAGAGGTAAGTAAGCGTTCTGCTCTTCGAAGACTGAGGTTAGTAAGCGC
Found at i:22036 original size:35 final size:35
Alignment explanation
Indices: 21942--22037 Score: 93
Period size: 35 Copynumber: 2.7 Consensus size: 35
21932 AGGTTGGTAA
* *
21942 GTGTTCTACTCTTTGAAGATTAAAAAGAAAAAGAG
1 GTGTCCTACTTTTTGAAGATTAAAAAGAAAAAGAG
* * * * * ** *
21977 GTTTCCTACTTTCTGAGGACTAAAAAGGAAACTAT
1 GTGTCCTACTTTTTGAAGATTAAAAAGAAAAAGAG
*
22012 GTGTCCTTCTTTTTGAAGATTAAAAA
1 GTGTCCTACTTTTTGAAGATTAAAAA
22038 AAGTGTCCTT
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (35 bp):
GTGTCCTACTTTTTGAAGATTAAAAAGAAAAAGAG
Found at i:24241 original size:27 final size:26
Alignment explanation
Indices: 24201--24265 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
24191 AAAACGGGGC
* *
24201 TAGAGTGTCCCCTCAGAAGAAT-GGGAT
1 TAGAGTAT-CCCTCAAAAGAATAGGG-T
*
24228 TGGAGTAATCCCTCAAAAGAATAGGGT
1 TAGAGT-ATCCCTCAAAAGAATAGGGT
24255 TAGAGTATCCC
1 TAGAGTATCCC
24266 CGTGAATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
26 5 0.16
27 23 0.72
28 4 0.12
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (26 bp):
TAGAGTATCCCTCAAAAGAATAGGGT
Found at i:24606 original size:163 final size:163
Alignment explanation
Indices: 24336--24661 Score: 625
Period size: 163 Copynumber: 2.0 Consensus size: 163
24326 CCATAAAAGC
24336 AGTTATGCCTTAACCTGGTCTATCAGAAGTTTGAAAAGGGTTTCGAGGCTGATCGAGGTTATACG
1 AGTTATGCCTTAACCTGGTCTATCAGAAGTTTGAAAAGGGTTTCGAGGCTGATCGAGGTTATACG
24401 GAGACATTTGAATGTCTTGAGATGAAACCAGAGAAAATGCACTAATTTTGGCAACAACCAAAAAC
66 GAGACATTTGAATGTCTTGAGATGAAACCAGAGAAAATGCACTAATTTTGGCAACAACCAAAAAC
24466 AGGGGACAACATCGCACTGTCCCACTTCTCAAG
131 AGGGGACAACATCGCACTGTCCCACTTCTCAAG
24499 AGTTATGCCTTAACCTGGTCTATCAGAAGTTTGAAAAGGGTTTCGAGGCTGATCGAGGTTATACG
1 AGTTATGCCTTAACCTGGTCTATCAGAAGTTTGAAAAGGGTTTCGAGGCTGATCGAGGTTATACG
* *
24564 GAGACATTTGAATGTCTTGAGATGAAACCAGAGAAAATGCACTAATTTTGGCAATAACCAAAAAT
66 GAGACATTTGAATGTCTTGAGATGAAACCAGAGAAAATGCACTAATTTTGGCAACAACCAAAAAC
*
24629 AGGGGACAATATCGCACTGTCCCACTTCTCAAG
131 AGGGGACAACATCGCACTGTCCCACTTCTCAAG
24662 TTTATTTCGG
Statistics
Matches: 160, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 160 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (163 bp):
AGTTATGCCTTAACCTGGTCTATCAGAAGTTTGAAAAGGGTTTCGAGGCTGATCGAGGTTATACG
GAGACATTTGAATGTCTTGAGATGAAACCAGAGAAAATGCACTAATTTTGGCAACAACCAAAAAC
AGGGGACAACATCGCACTGTCCCACTTCTCAAG
Found at i:26660 original size:40 final size:40
Alignment explanation
Indices: 26598--26674 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
26588 AAAACCCAGA
* *
26598 ATGTATCGATACAATGAGAAATGTATCGATGCAATTTCCT
1 ATGTATCGATACAATGAAAAATGTATCGATACAATTTCCT
* * *
26638 ATGTATCGATGCATTGAAAAATGTATCTATACAATTT
1 ATGTATCGATACAATGAAAAATGTATCGATACAATTT
26675 TATTTCAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (40 bp):
ATGTATCGATACAATGAAAAATGTATCGATACAATTTCCT
Found at i:26661 original size:20 final size:20
Alignment explanation
Indices: 26597--26664 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
26587 CAAAACCCAG
* * *
26597 AATGTATCGATACAATGAGA
1 AATGTATCGATGCATTGAAA
***
26617 AATGTATCGATGCAATT-TCC
1 AATGTATCGATGC-ATTGAAA
*
26637 TATGTATCGATGCATTGAAA
1 AATGTATCGATGCATTGAAA
26657 AATGTATC
1 AATGTATC
26665 TATACAATTT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
19 3 0.08
20 31 0.86
21 2 0.06
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (20 bp):
AATGTATCGATGCATTGAAA
Found at i:26765 original size:21 final size:20
Alignment explanation
Indices: 26718--26771 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
26708 CCTTTCAGGC
26718 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
*
26738 ATGTATCAATACATTGC-CTT
1 ATGTATCGATACATT-CACTT
26758 ATTGTATCGATACA
1 A-TGTATCGATACA
26772 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:41602 original size:4 final size:4
Alignment explanation
Indices: 41593--41663 Score: 50
Period size: 4 Copynumber: 18.8 Consensus size: 4
41583 GTTAGGTAAA
41593 AAAG AAAG AAAG -AAG ATGAAG -AAG AAAG AAAG -AAG ATGAAG -AAG
1 AAAG AAAG AAAG AAAG A--AAG AAAG AAAG AAAG AAAG A--AAG AAAG
41637 AAAG AAAG -AA- AAAG AAA- AAA- AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
41664 AAAATATGAA
Statistics
Matches: 56, Mismatches: 0, Indels: 22
0.72 0.00 0.28
Matches are distributed among these distances:
3 22 0.39
4 28 0.50
6 6 0.11
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:41619 original size:20 final size:20
Alignment explanation
Indices: 41594--41646 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
41584 TTAGGTAAAA
41594 AAGAAAGAAAGAAGATGAAG
1 AAGAAAGAAAGAAGATGAAG
41614 AAGAAAGAAAGAAGATGAAG
1 AAGAAAGAAAGAAGATGAAG
41634 AAGAAAGAAAGAA
1 AAGAAAGAAAGAA
41647 AAAGAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.04
Consensus pattern (20 bp):
AAGAAAGAAAGAAGATGAAG
Found at i:41660 original size:20 final size:20
Alignment explanation
Indices: 41590--41674 Score: 80
Period size: 20 Copynumber: 4.2 Consensus size: 20
41580 AGGGTTAGGT
*
41590 AAAAAAGAAAGAAAGAAGATG
1 AAAAAA-AAAGAAAGAAAATG
* * *
41611 AAGAAGAAAGAAAGAAGATG
1 AAAAAAAAAGAAAGAAAATG
* * *
41631 AAGAAGAAAGAAAGAAAAAG
1 AAAAAAAAAGAAAGAAAATG
*
41651 AAAAAAAAAGAAAAAAATATG
1 AAAAAAAAAGAAAGAAA-ATG
41672 AAA
1 AAA
41675 TGGAGTGGCC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
20 46 0.84
21 9 0.16
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (20 bp):
AAAAAAAAAGAAAGAAAATG
Found at i:41674 original size:11 final size:10
Alignment explanation
Indices: 41637--41667 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
41627 GATGAAGAAG
*
41637 AAAGAAAGAA
1 AAAGAAAAAA
41647 AAAGAAAAAA
1 AAAGAAAAAA
41657 AAAGAAAAAA
1 AAAGAAAAAA
41667 A
1 A
41668 TATGAAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:42695 original size:4 final size:4
Alignment explanation
Indices: 42686--42757 Score: 50
Period size: 4 Copynumber: 18.8 Consensus size: 4
42676 GTTAGGTAAA
42686 AAAG AAAG AAAG -AAG ATGAAG -AAG AAAG AAAG -AAG ATGAAG -AAG
1 AAAG AAAG AAAG AAAG A--AAG AAAG AAAG AAAG AAAG A--AAG AAAG
*
42730 AAAG AAAG -AA- AAAG AAA- AAAA AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
42758 AAAATATGAA
Statistics
Matches: 56, Mismatches: 1, Indels: 22
0.71 0.01 0.28
Matches are distributed among these distances:
3 19 0.34
4 31 0.55
6 6 0.11
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:42707 original size:17 final size:17
Alignment explanation
Indices: 42687--42746 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 17
42677 TTAGGTAAAA
42687 AAGAAAGAAAGAAGATGAAG
1 AAGAAAGAAAGAAGAT---G
42707 AAGAAAGAAAGAAGATG
1 AAGAAAGAAAGAAGATG
42724 AAG-AAGAAAGAA-A-G
1 AAGAAAGAAAGAAGATG
42738 AA-AAAGAAA
1 AAGAAAGAAA
42747 AAAAAAAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.23
15 1 0.03
16 9 0.23
17 4 0.10
20 16 0.41
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAAGAAGATG
Found at i:42712 original size:20 final size:20
Alignment explanation
Indices: 42687--42739 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
42677 TTAGGTAAAA
42687 AAGAAAGAAAGAAGATGAAG
1 AAGAAAGAAAGAAGATGAAG
42707 AAGAAAGAAAGAAGATGAAG
1 AAGAAAGAAAGAAGATGAAG
42727 AAGAAAGAAAGAA
1 AAGAAAGAAAGAA
42740 AAAGAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.04
Consensus pattern (20 bp):
AAGAAAGAAAGAAGATGAAG
Found at i:42754 original size:17 final size:17
Alignment explanation
Indices: 42724--42759 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
42714 AAAGAAGATG
* *
42724 AAGAAGAAAGAAAGAAA
1 AAGAAAAAAAAAAGAAA
42741 AAGAAAAAAAAAAGAAA
1 AAGAAAAAAAAAAGAAA
42758 AA
1 AA
42760 AATATGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAAAGAAA
Found at i:43689 original size:196 final size:196
Alignment explanation
Indices: 43355--43744 Score: 762
Period size: 196 Copynumber: 2.0 Consensus size: 196
43345 TATTTGTGCC
*
43355 TTATTTTGTGTCAAAACCTTGAGTGGTATGATCAACGGGGTGTTTCATCGTCTCAAACTACTCCG
1 TTATTTTGTGTCAAAACCTTGAGTGGTATGATCAACGGGCTGTTTCATCGTCTCAAACTACTCCG
43420 GAATTGTGTAAATGAGTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCATAGACATTCGGATG
66 GAATTGTGTAAATGAGTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCATAGACATTCGGATG
*
43485 TCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTGTTTTACTATGC
131 TCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTATTTTACTATGC
43550 T
196 T
43551 TTATTTTGTGTCAAAACCTTGAGTGGTATGATCAACGGGCTGTTTCATCGTCTCAAACTACTCCG
1 TTATTTTGTGTCAAAACCTTGAGTGGTATGATCAACGGGCTGTTTCATCGTCTCAAACTACTCCG
43616 GAATTGTGTAAATGAGTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCATAGACATTCGGATG
66 GAATTGTGTAAATGAGTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCATAGACATTCGGATG
43681 TCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTATTTTACTATG
131 TCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTATTTTACTATG
43745 TCCTCTGCTG
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
196 192 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (196 bp):
TTATTTTGTGTCAAAACCTTGAGTGGTATGATCAACGGGCTGTTTCATCGTCTCAAACTACTCCG
GAATTGTGTAAATGAGTTCGTGATGCTCATACCACTCTTTCCCTTCTGTCATAGACATTCGGATG
TCCATGATTCGAGTTTAGACCCGTAAACATTTAGGAAACCGAAACCTTCTCCTATTTTACTATGC
T
Found at i:45340 original size:106 final size:106
Alignment explanation
Indices: 45155--45366 Score: 415
Period size: 106 Copynumber: 2.0 Consensus size: 106
45145 CCAATGAAAC
45155 CAATATCAAGTCAAAATGTAGCTAGTAAGGTACCGATTTCGGGCGTCGCGAGGAGGTTCGTACCT
1 CAATATCAAGTCAAAATGTAGCTAGTAAGGTACCGATTTCGGGCGTCGCGAGGAGGTTCGTACCT
*
45220 CTTTGCGCGTAACCAACTCCCGAACCCAATCGATGAATCTT
66 CTTTGCGCGTAACCAACTCCCGAACCCAATCGACGAATCTT
45261 CAATATCAAGTCAAAATGTAGCTAGTAAGGTACCGATTTCGGGCGTCGCGAGGAGGTTCGTACCT
1 CAATATCAAGTCAAAATGTAGCTAGTAAGGTACCGATTTCGGGCGTCGCGAGGAGGTTCGTACCT
45326 CTTTGCGCGTAACCAACTCCCGAACCCAATCGACGAATCTT
66 CTTTGCGCGTAACCAACTCCCGAACCCAATCGACGAATCTT
45367 TGAATTACGT
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 105 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (106 bp):
CAATATCAAGTCAAAATGTAGCTAGTAAGGTACCGATTTCGGGCGTCGCGAGGAGGTTCGTACCT
CTTTGCGCGTAACCAACTCCCGAACCCAATCGACGAATCTT
Found at i:46989 original size:13 final size:13
Alignment explanation
Indices: 46971--47029 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
46961 ACATTATGCT
46971 TTGTATCGATACA
1 TTGTATCGATACA
46984 TTGTATCGATACA
1 TTGTATCGATACA
46997 -TG---C--T-CA
1 TTGTATCGATACA
47003 TTGTATCGATACA
1 TTGTATCGATACA
*
47016 TTGTATCGACACA
1 TTGTATCGATACA
47029 T
1 T
47030 GCTCATTGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
6 2 0.05
7 3 0.08
9 1 0.03
10 1 0.03
12 3 0.08
13 28 0.74
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:47006 original size:19 final size:19
Alignment explanation
Indices: 46982--47069 Score: 89
Period size: 19 Copynumber: 4.9 Consensus size: 19
46972 TGTATCGATA
46982 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
47001 CATTGTATCGAT--A----
1 CATTGTATCGATACATGCT
*
47014 CATTGTATCGACACATGCT
1 CATTGTATCGATACATGCT
**
47033 CATTGTATCGATACATGGA
1 CATTGTATCGATACATGCT
*
47052 CAACTGTATCGATACATG
1 C-ATTGTATCGATACATG
47070 AAATTGGCAG
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
13 11 0.19
15 1 0.02
17 1 0.02
19 29 0.51
20 15 0.26
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:47012 original size:32 final size:32
Alignment explanation
Indices: 46952--47048 Score: 149
Period size: 32 Copynumber: 3.0 Consensus size: 32
46942 TACACACAGA
** *
46952 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATGCT-CATTGTATCGATACAT
46985 TGTATCGATACATGCTCATTGTATCGATACAT
1 TGTATCGATACATGCTCATTGTATCGATACAT
*
47017 TGTATCGACACATGCTCATTGTATCGATACAT
1 TGTATCGATACATGCTCATTGTATCGATACAT
47049 GGACAACTGT
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 46 0.77
33 14 0.23
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATGCTCATTGTATCGATACAT
Found at i:48149 original size:118 final size:118
Alignment explanation
Indices: 47941--48175 Score: 326
Period size: 118 Copynumber: 2.0 Consensus size: 118
47931 ATACATATCA
* * *
47941 AACCAAAATCCCTATTGAGGATTATTTTTTAGTTGGGCCCACTCCGTCAACGATGACAGTTATGA
1 AACCAAAATCCCTATCGAGGATTATGTTTTAGTTGGGCCCACTCCGTCAACGATGACAGTTATAA
* *
48006 CAAATTGCAATTTTAATAATGTGATAATCTAAAATTAAAAGTCTTTGCTCATC
66 CAAATTACAATTTTAATAATGTGATAATCTAAAATTAAAAATCTTTGCTCATC
* ** * * * **
48059 AACCAAAATCCCTATCGAGGATTCTGTTTTAGTTGGGTGCACTTCGTCGATGATGATTGTTATAA
1 AACCAAAATCCCTATCGAGGATTATGTTTTAGTTGGGCCCACTCCGTCAACGATGACAGTTATAA
* * *
48124 CAAATTACAATTTTAATTATGTGATAATCTAAAGTTAAAAATGTTTGCTCAT
66 CAAATTACAATTTTAATAATGTGATAATCTAAAATTAAAAATCTTTGCTCAT
48176 TGAGTAGTTT
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
118 101 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (118 bp):
AACCAAAATCCCTATCGAGGATTATGTTTTAGTTGGGCCCACTCCGTCAACGATGACAGTTATAA
CAAATTACAATTTTAATAATGTGATAATCTAAAATTAAAAATCTTTGCTCATC
Found at i:51156 original size:20 final size:19
Alignment explanation
Indices: 51125--51163 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
51115 AATTTTAATA
51125 ATTTATATATTTATATTAT
1 ATTTATATATTTATATTAT
*
51144 ATTTATAATATTTTTATTAT
1 ATTTAT-ATATTTATATTAT
51164 TAAAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTATATATTTATATTAT
Found at i:51224 original size:11 final size:11
Alignment explanation
Indices: 51210--51269 Score: 51
Period size: 11 Copynumber: 6.0 Consensus size: 11
51200 ATAAATGTTA
51210 ATATTTATATT
1 ATATTTATATT
51221 ATATTTATA-T
1 ATATTTATATT
51231 A-ATTT-T-TT
1 ATATTTATATT
*
51239 -TATTTTTATT
1 ATATTTATATT
*
51249 ATATTT-TAAT
1 ATATTTATATT
*
51259 ATTTTTATATT
1 ATATTTATATT
51270 TCATTCATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
8 6 0.15
9 5 0.12
10 12 0.30
11 17 0.43
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
ATATTTATATT
Found at i:51243 original size:8 final size:8
Alignment explanation
Indices: 51219--51270 Score: 50
Period size: 8 Copynumber: 6.0 Consensus size: 8
51209 AATATTTATA
51219 TTATATTT
1 TTATATTT
*
51227 ATATAATTT
1 TTAT-ATTT
*
51236 TTTTATTT
1 TTATATTT
51244 TTATTATATT
1 TTA-TAT-TT
51254 TTAATATTT
1 TT-ATATTT
51263 TTATATTT
1 TTATATTT
51271 CATTCATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
8 15 0.42
9 13 0.36
10 7 0.19
11 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TTATATTT
Found at i:51246 original size:19 final size:20
Alignment explanation
Indices: 51210--51268 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
51200 ATAAATGTTA
*
51210 ATATTTATATTATATTTATAT
1 ATATTT-TATTATTTTTATAT
*
51231 A-ATTTTTTTATTTTTAT-T
1 ATATTTTATTATTTTTATAT
*
51249 ATATTTTAATATTTTTATAT
1 ATATTTTATTATTTTTATAT
51269 TTCATTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
18 2 0.06
19 24 0.75
20 5 0.16
21 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATATTTTATTATTTTTATAT
Found at i:53636 original size:52 final size:50
Alignment explanation
Indices: 53554--53676 Score: 160
Period size: 52 Copynumber: 2.4 Consensus size: 50
53544 ACTCCAACTA
53554 TAAAATAATAAAAATTTTAAAAATATTTATATTAAA-TCTAAAATTA-TCATT
1 TAAAATAATAAAAA-TTTAAAAATATTTATATTAAACT-TAAAATTACT-ATT
*
53605 TAAAACTAATAAAAATTTAAAAATATTTTATATTAAACTTTAAATTACTATT
1 TAAAA-TAATAAAAATTTAAAAATA-TTTATATTAAACTTAAAATTACTATT
53657 TAAAAAATAATAAAAATTTA
1 T--AAAATAATAAAAATTTA
53677 TATTAATTTA
Statistics
Matches: 65, Mismatches: 1, Indels: 10
0.86 0.01 0.13
Matches are distributed among these distances:
51 15 0.23
52 31 0.48
53 15 0.23
54 4 0.06
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (50 bp):
TAAAATAATAAAAATTTAAAAATATTTATATTAAACTTAAAATTACTATT
Found at i:53858 original size:52 final size:51
Alignment explanation
Indices: 53691--53857 Score: 200
Period size: 52 Copynumber: 3.3 Consensus size: 51
53681 AATTTACAAT
* * * *
53691 TTAAAAATAATAAAAATTATAA-ATATTTTATATAAAATCTTCAATTAGTAA
1 TTAAAAATAATAAAAATTAAAACATATTTTATATTAAATC-TAAATTACTAA
* **
53742 --AAAAATAA-AAAAGTTAAAACATATTTTATATTAAATCCTAAATTACTTT
1 TTAAAAATAATAAAAATTAAAACATATTTTATATTAAAT-CTAAATTACTAA
*
53791 TTAAAAATAATAAAAATGAAAACATATTTTATATTAAATCTAGAATTACTAA
1 TTAAAAATAATAAAAATTAAAACATATTTTATATTAAATCTA-AATTACTAA
53843 TTAAAAAT-ATAAAAA
1 TTAAAAATAATAAAAA
53858 AATTATATGA
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
48 9 0.09
49 30 0.30
50 1 0.01
51 18 0.18
52 41 0.41
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (51 bp):
TTAAAAATAATAAAAATTAAAACATATTTTATATTAAATCTAAATTACTAA
Found at i:62321 original size:1 final size:1
Alignment explanation
Indices: 62315--62381 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
62305 TGTCCTCTGC
* * * * * * * * *
62315 AAAAAAAAAACAAAAAAACAAAAAAAAAACAAACATAAAATAAAAAATAAAAAAAAACACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
62380 AA
1 AA
62382 CCAACAAACA
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.87, C:0.09, G:0.00, T:0.04
Consensus pattern (1 bp):
A
Found at i:62330 original size:11 final size:12
Alignment explanation
Indices: 62316--62381 Score: 68
Period size: 11 Copynumber: 5.6 Consensus size: 12
62306 GTCCTCTGCA
62316 AAAAAAAAACA-
1 AAAAAAAAACAT
62327 AAAAAACAAA-A-
1 AAAAAA-AAACAT
62338 AAAAAACAAACAT
1 AAAAAA-AAACAT
62351 AAAATAAAAA-AT
1 AAAA-AAAAACAT
*
62363 AAAAAAAAACAC
1 AAAAAAAAACAT
62375 AAAAAAA
1 AAAAAAA
62382 CCAACAAACA
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
11 22 0.45
12 18 0.37
13 7 0.14
14 2 0.04
ACGTcount: A:0.86, C:0.09, G:0.00, T:0.05
Consensus pattern (12 bp):
AAAAAAAAACAT
Found at i:62368 original size:30 final size:30
Alignment explanation
Indices: 62321--62377 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
62311 CTGCAAAAAA
62321 AAAACAAAAAAACAAAAAAAAAACAAACAT
1 AAAACAAAAAAACAAAAAAAAAACAAACAT
* *
62351 AAAATAAAAAATA-AAAAAAAACACAAA
1 AAAACAAAAAA-ACAAAAAAAAAACAAA
62378 AAAACCAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.84, C:0.11, G:0.00, T:0.05
Consensus pattern (30 bp):
AAAACAAAAAAACAAAAAAAAAACAAACAT
Found at i:63773 original size:28 final size:28
Alignment explanation
Indices: 63729--63807 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 28
63719 GAATCCCTTC
*
63729 TCAAAGTACACTAGTCAGTGGCACCTCT
1 TCAAAGTACACAAGTCAGTGGCACCTCT
* * *
63757 TCGAAGTTCACAAGTCAGTGGCATCTCT
1 TCAAAGTACACAAGTCAGTGGCACCTCT
*
63785 TCAAAGTCCACAA-TCAGTGGCAC
1 TCAAAGTACACAAGTCAGTGGCAC
63808 TTGCTGTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 9 0.20
28 35 0.80
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (28 bp):
TCAAAGTACACAAGTCAGTGGCACCTCT
Found at i:64042 original size:32 final size:32
Alignment explanation
Indices: 63979--64336 Score: 373
Period size: 32 Copynumber: 11.2 Consensus size: 32
63969 CCAATGGAGG
* * *
63979 AACCTTTTCTAGAGCCCACATAAGCTAGTGGC
1 AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
* *
64011 AACCGTTTTC-AAAGCCTACACAAGTTGGTGGC
1 AACC-TTTTCTAAAGCCCACACAAGTTAGTGGC
* * *
64043 AACCCTTTCTAGAGCCCACACAAGTTAGTAGC
1 AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
*
64075 AACAC-TTTCTAAAGCCCACACAAGCTAGTGGC
1 AAC-CTTTTCTAAAGCCCACACAAGTTAGTGGC
* * *
64107 AACCTTCTTC-AAAGCCCACATAAGTTGGTGGT
1 AACCTT-TTCTAAAGCCCACACAAGTTAGTGGC
* * *
64139 GACCTTTTCTAAAGCCCACATAAGTTAGTGGT
1 AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
*
64171 AACCCTTTCTAAAGCCCACACAAGTTAGTGGC
1 AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
* ** * *
64203 AACCTTTTCTTAAGTTCACACGAGCTAGTGGC
1 AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
*
64235 AACCTTTT-TCAAAGCCCACACAAGTTGGTGGC
1 AACCTTTTCT-AAAGCCCACACAAGTTAGTGGC
* * * **
64267 GACCCTTTCTAAAGCCCATACAAGTCGGTGGC
1 AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
* * * *
64299 AACCCTTTCCAAAGCCCACACAAGCTGGTGGC
1 AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
64331 AACCTT
1 AACCTT
64337 CATTCACAGC
Statistics
Matches: 273, Mismatches: 45, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
31 9 0.03
32 254 0.93
33 10 0.04
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (32 bp):
AACCTTTTCTAAAGCCCACACAAGTTAGTGGC
Found at i:64089 original size:64 final size:64
Alignment explanation
Indices: 63979--64379 Score: 380
Period size: 64 Copynumber: 6.2 Consensus size: 64
63969 CCAATGGAGG
* * * * * *
63979 AACCTTTTCTAGAGCCCACATAAGCTAGTGGCAACCGTTTTC-AAAGCCTACACAAGTTGGTGGC
1 AACCCTTTCTAAAGCCCACACAAGTTAGTGGCAACC-TTTTCTAAAGCCCACACAAGTTAGTGGC
* * *
64043 AACCCTTTCTAGAGCCCACACAAGTTAGTAGCAACAC-TTTCTAAAGCCCACACAAGCTAGTGGC
1 AACCCTTTCTAAAGCCCACACAAGTTAGTGGCAAC-CTTTTCTAAAGCCCACACAAGTTAGTGGC
* * * ** * *
64107 AACCTTCTTC-AAAGCCCACATAAGTTGGTGGTGACCTTTTCTAAAGCCCACATAAGTTAGTGGT
1 AACCCT-TTCTAAAGCCCACACAAGTTAGTGGCAACCTTTTCTAAAGCCCACACAAGTTAGTGGC
* ** * *
64171 AACCCTTTCTAAAGCCCACACAAGTTAGTGGCAACCTTTTCTTAAGTTCACACGAGCTAGTGGC
1 AACCCTTTCTAAAGCCCACACAAGTTAGTGGCAACCTTTTCTAAAGCCCACACAAGTTAGTGGC
* * * * * **
64235 AA-CCTTTTTCAAAGCCCACACAAGTTGGTGGCGACCCTTTCTAAAGCCCATACAAGTCGGTGGC
1 AACCCTTTCT-AAAGCCCACACAAGTTAGTGGCAACCTTTTCTAAAGCCCACACAAGTTAGTGGC
* * * * * ** *
64299 AACCCTTTCCAAAGCCCACACAAGCTGGTGGCAACCTTCATTC-ACAGCCCATACAAGTCGGTAG
1 AACCCTTTCTAAAGCCCACACAAGTTAGTGGCAACCTT--TTCTAAAGCCCACACAAGTTAGTGG
64363 C
64 C
*
64364 AACCCTTTCAAAAGCC
1 AACCCTTTCTAAAGCC
64380 AAAATAAGTA
Statistics
Matches: 279, Mismatches: 49, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
63 14 0.05
64 218 0.78
65 44 0.16
66 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (64 bp):
AACCCTTTCTAAAGCCCACACAAGTTAGTGGCAACCTTTTCTAAAGCCCACACAAGTTAGTGGC
Found at i:64148 original size:96 final size:95
Alignment explanation
Indices: 63979--64379 Score: 421
Period size: 96 Copynumber: 4.2 Consensus size: 95
63969 CCAATGGAGG
* * * * *
63979 AACCTTTTCTAGAGCCCACATAAGCTAGTGGCAACCGTTTTCAAAGCCTACACAAGTTGGTGGCA
1 AACCCTTTCTAAAGCCCACACAAGCTAGTGGCAACC-TTTTCAAAGCCCACACAAGCTGGTGGCA
* *
64044 ACCCTTTCTAGAGCCCACACAAGTTAGTAGC
65 ACCTTTTCTAAAGCCCACACAAGTTAGTAGC
* * * **
64075 AACACTTTCTAAAGCCCACACAAGCTAGTGGCAACCTTCTTCAAAGCCCACATAAGTTGGTGGTG
1 AACCCTTTCTAAAGCCCACACAAGCTAGTGGCAACCTT-TTCAAAGCCCACACAAGCTGGTGGCA
* * *
64140 ACCTTTTCTAAAGCCCACATAAGTTAGTGGT
65 ACCTTTTCTAAAGCCCACACAAGTTAGTAGC
* * ** * *
64171 AACCCTTTCTAAAGCCCACACAAGTTAGTGGCAACCTTTTCTTAAGTTCACACGAGCTAGTGGCA
1 AACCCTTTCTAAAGCCCACACAAGCTAGTGGCAACCTTTTC-AAAGCCCACACAAGCTGGTGGCA
* *
64236 ACCTTTT-TCAAAGCCCACACAAGTTGGTGGC
65 ACCTTTTCT-AAAGCCCACACAAGTTAGTAGC
* * * *
64267 GACCCTTTCTAAAGCCCATACAAG-TCGGTGGCAACCCTTTCCAAAGCCCACACAAGCTGGTGGC
1 AACCCTTTCTAAAGCCCACACAAGCT-AGTGGCAA-CCTTTTCAAAGCCCACACAAGCTGGTGGC
* * **
64331 AACCTTCATTC-ACAGCCCATACAAGTCGGTAGC
64 AACCTT--TTCTAAAGCCCACACAAGTTAGTAGC
*
64364 AACCCTTTCAAAAGCC
1 AACCCTTTCTAAAGCC
64380 AAAATAAGTA
Statistics
Matches: 255, Mismatches: 42, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
95 7 0.03
96 208 0.82
97 38 0.15
98 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (95 bp):
AACCCTTTCTAAAGCCCACACAAGCTAGTGGCAACCTTTTCAAAGCCCACACAAGCTGGTGGCAA
CCTTTTCTAAAGCCCACACAAGTTAGTAGC
Found at i:65642 original size:19 final size:19
Alignment explanation
Indices: 65618--65668 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
65608 ATCCATATAA
65618 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTTT
65637 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTTT
65656 TGTATCGATACAT
1 TGTATCGATACAT
65669 TTATCATTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATAAGTTT
Found at i:69828 original size:88 final size:87
Alignment explanation
Indices: 69651--69894 Score: 310
Period size: 88 Copynumber: 2.8 Consensus size: 87
69641 GATTTTAGGA
* * *
69651 AAACTCCATCCCTATTATTCTAAAGG-GATACTCCAACCCCGATCTTAAAAAAATTCAAAATTTT
1 AAACTCCATCCCTACTATTCT-AAGGAGATACTCTAACCCCGATCTT-TAAAAATTCAAAATTTT
69715 CCTTCATATAATTTTATCTTTGGG
64 CCTTCATATAATTTTATCTTTGGG
* * *
69739 AAACTCCATCCCTACTAATCTAAGGAGATACTCTAACCCCTATCTTTAAAAATTCAAAATTTTCT
1 AAACTCCATCCCTACTATTCTAAGGAGATACTCTAACCCCGATCTTTAAAAATTCAAAATTTTCC
*
69804 TTCTTATAATTTTATCTTTGGGG
66 TTCATATAATTTTATCTTT-GGG
* * * * * * * *
69827 AAACTCCATCCCCACTATTCCAAGAAGATATTCTAACCTCGATCTTTAGAAAACTCACACTTTTC
1 AAACTCCATCCCTACTATTCTAAGGAGATACTCTAACCCCGATCTTTA-AAAATTCAAAATTTTC
69892 CTT
65 CTT
69895 AGTATTTGAG
Statistics
Matches: 135, Mismatches: 18, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
87 39 0.29
88 81 0.60
89 15 0.11
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (87 bp):
AAACTCCATCCCTACTATTCTAAGGAGATACTCTAACCCCGATCTTTAAAAATTCAAAATTTTCC
TTCATATAATTTTATCTTTGGG
Found at i:70827 original size:20 final size:20
Alignment explanation
Indices: 70804--70854 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
70794 ACACCTAGAT
*
70804 GTATCAATACAAATTGCTAA
1 GTATCAATACAAATTACTAA
* **
70824 GTATCGATACAAATTACTTT
1 GTATCAATACAAATTACTAA
70844 GTATCAATACA
1 GTATCAATACA
70855 CTATGAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (20 bp):
GTATCAATACAAATTACTAA
Found at i:72141 original size:19 final size:19
Alignment explanation
Indices: 72091--72147 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
72081 TGAGTTTTCC
* *
72091 AAATTATATTGATACAATGA
1 AAATTATATCGATAC-ATTA
* *
72111 AATTTGTATCGATACATTA
1 AAATTATATCGATACATTA
72130 AAATTATATCGATACATT
1 AAATTATATCGATACATT
72148 TCGACTATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 19 0.61
20 12 0.39
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.39
Consensus pattern (19 bp):
AAATTATATCGATACATTA
Found at i:73423 original size:36 final size:34
Alignment explanation
Indices: 73344--73623 Score: 192
Period size: 31 Copynumber: 8.4 Consensus size: 34
73334 TGGGGACGAA
* *
73344 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
73373 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * * *
73410 TTTTAAAGTCCACAACCCCGTGGCACATTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
73444 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
73474 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
73504 TTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
73541 TTTTAAAGCCCACAACTCCGTGGCACCTTATT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
73574 TTTTTAAGTCCATAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
73609 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
73624 CAAGTCGGTG
Statistics
Matches: 203, Mismatches: 29, Indels: 31
0.77 0.11 0.12
Matches are distributed among these distances:
29 4 0.02
30 11 0.05
31 60 0.30
32 2 0.01
33 44 0.22
34 6 0.03
35 17 0.08
36 49 0.24
37 10 0.05
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:73582 original size:131 final size:131
Alignment explanation
Indices: 73348--73585 Score: 404
Period size: 131 Copynumber: 1.8 Consensus size: 131
73338 GACGAATTTT
73348 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
73413 TAAAGTCCACAACCCCGTGGCACATTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACATTATTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
73478 A
131 A
* * *
73479 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
73544 TAAAGCCCACAACTCCGTGGCACCTTATTCTTTTTAAGTCCA
66 TAAAGCCCACAACCCCGTGGCACATTATTCCTTTTAAGTCCA
73586 TAACTTCGTG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 99 1.00
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACATTATTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
A
Found at i:73653 original size:33 final size:33
Alignment explanation
Indices: 73607--73768 Score: 247
Period size: 33 Copynumber: 4.9 Consensus size: 33
73597 CATCTTTCAC
73607 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
73639 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
73672 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
73705 CCCTCTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
73737 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCA
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCA
73769 TCCCTTCTAA
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
32 7 0.06
33 111 0.94
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:73840 original size:49 final size:48
Alignment explanation
Indices: 73776--73955 Score: 208
Period size: 43 Copynumber: 3.8 Consensus size: 48
73766 GCATCCCTTC
* *
73776 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC-TCTT
*
73825 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
* *
73868 TAAGTCGAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-C-TCTT
* * *
73920 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
73956 ACATCCTTTT
Statistics
Matches: 111, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 39 0.35
45 1 0.01
49 36 0.32
50 1 0.01
52 34 0.31
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTCTT
Found at i:73944 original size:52 final size:55
Alignment explanation
Indices: 73865--73978 Score: 155
Period size: 52 Copynumber: 2.1 Consensus size: 55
73855 ACATTGGCAC
* *
73865 CTTTAAGTCGAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCGAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
73917 CTTTAAGTTC-AATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAG-TCGAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
73972 CTTTAAG
1 CTTTAAG
73979 CCCACACAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
52 35 0.65
53 4 0.07
54 5 0.09
55 10 0.19
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCGAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:73948 original size:95 final size:93
Alignment explanation
Indices: 73783--73964 Score: 294
Period size: 95 Copynumber: 1.9 Consensus size: 93
73773 TTCTAAGCCC
*
73783 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
73848 AATCAGCACATTGGCA-CCTTTAAGTCG
66 AATCAGCACATTGACATCCTTTAAGTCG
* *
73875 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCT
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGCC
73940 TTGAATCAGCACATTGACATCCTTT
63 TTGAATCAGCACATTGACATCCTTT
73965 TTCTCATCTT
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
92 34 0.41
94 2 0.02
95 41 0.50
96 5 0.06
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (93 bp):
AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
AATCAGCACATTGACATCCTTTAAGTCG
Found at i:74018 original size:33 final size:32
Alignment explanation
Indices: 73976--74110 Score: 157
Period size: 33 Copynumber: 4.2 Consensus size: 32
73966 TCTCATCTTT
*
73976 AAGCCCACACAAGTCGGTGGCAAACCTTCCCTA
1 AAGCCCACACAAGTCGGTGGC-AACCTTCTCTA
* **
74009 AAGCCCACACAAGTTGGTGGCAACCCACTCTA
1 AAGCCCACACAAGTCGGTGGCAACCTTCTCTA
* *
74041 AAGCCCACACAAGTTGGTGGCCACCATTCTCTA
1 AAGCCCACACAAGTCGGTGGCAACC-TTCTCTA
** *
74074 AAGCCCATGCAAGTCGGTGGCAAGCTT-TCT-
1 AAGCCCACACAAGTCGGTGGCAACCTTCTCTA
74104 AAGCCCA
1 AAGCCCA
74111 ATATAGCTGG
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
30 7 0.08
31 3 0.03
32 34 0.38
33 45 0.51
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (32 bp):
AAGCCCACACAAGTCGGTGGCAACCTTCTCTA
Found at i:74171 original size:49 final size:49
Alignment explanation
Indices: 74103--74742 Score: 616
Period size: 49 Copynumber: 13.7 Consensus size: 49
74093 GCAAGCTTTC
* *
74103 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
**
74152 TAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
74196 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
74238 TAAGTCCAATACAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
74287 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACAATGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
74331 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * *
74379 TAAGTCTAATGTAGTTGGCATTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
74423 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
74471 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGG---C-TC--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * * * *
74514 CAAGTCTAATATCGCT-GCCTTTTAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCC-TTGAATCAGCACATTGGCACCTTCTTCTT
* * * *
74563 TAAGTCCAATGTAGCTGGCCTTGAATCAGTATATTGGCACCTTCTTCTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
74612 TAAGTCCGATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
74655 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CTTCTT
* * *
74707 TAAGTTCAATTTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
74743 ACATCCTTTT
Statistics
Matches: 483, Mismatches: 70, Indels: 73
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.00
42 4 0.01
43 197 0.41
44 1 0.00
45 3 0.01
46 22 0.05
47 3 0.01
48 2 0.00
49 211 0.44
50 4 0.01
52 35 0.07
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
Found at i:74214 original size:43 final size:43
Alignment explanation
Indices: 74153--74697 Score: 498
Period size: 43 Copynumber: 12.0 Consensus size: 43
74143 CTTCTTCTTT
**
74153 AAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * * *
74196 AAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCACCTTT
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * *
74239 AAGTCCAATACAACTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC
* * *
74285 TTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACAATGGCACCTTC
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* *
74331 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC---CTTC
* * * *
74377 TTTAAGTCTAATGTAGTTGGCATTGAATCAGCACATTGGCACCTTC
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* *
74423 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC
* * *
74469 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGGCTCCTTC
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * * *
74515 AAGTCTAATATCGCT-GCCTTTTAATCAGCATATTGGCACCTTCATC
1 AAGTCCAATATAGCTGGCC-TTGAATCAGCACATTGGCACC-T--TC
* * *
74561 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGTATATTGGCACCTTCTTC
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC
* * *
74610 TATAAGTCCGATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTT
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
*
74656 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
74698 TTCCATCTTT
Statistics
Matches: 412, Mismatches: 61, Indels: 58
0.78 0.11 0.11
Matches are distributed among these distances:
42 3 0.01
43 203 0.49
44 3 0.01
46 28 0.07
48 3 0.01
49 166 0.40
50 4 0.01
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (43 bp):
AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
Found at i:74292 original size:92 final size:92
Alignment explanation
Indices: 74165--74697 Score: 664
Period size: 92 Copynumber: 5.9 Consensus size: 92
74155 GTCCAACGTA
* * *
74165 GCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATCGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAG
* *
74224 CACATTAGCACCTTTAAGTCCAATA-C
66 CACATTGGCACCTTCAAGTCCAATATC
*
74250 AACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCA
1 -GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCA
*
74315 GCACAATGGCACCTTCAAGTCCAATATC
65 GCACATTGGCACCTTCAAGTCCAATATC
* * *
74343 GCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCTAATGTAGTTGGCATTGAATCAG
1 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAG
74408 CACATTGGCACCTTCAAGTCCAATATC
66 CACATTGGCACCTTCAAGTCCAATATC
74435 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT-TCAATGTAGCTGGCCTTGAATCA
1 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCT-AATGTAGCTGGCCTTGAATCA
* *
74499 GCACATTGGCTCCTTCAAGTCTAATATC
65 GCACATTGGCACCTTCAAGTCCAATATC
* * *
74527 GCT-GCCTTTTAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
1 GCTGGCC-TTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCA
* * * * *
74591 GTATATTGGCACCTTCTTCTATAAGTCCGATGTA
65 GCACATTGGCA-C--CTTC---AAGTCCAATATC
* * *
74625 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAG
*
74684 CATATTGGCACCTT
66 CACATTGGCACCTT
74698 TTCCATCTTT
Statistics
Matches: 399, Mismatches: 31, Indels: 31
0.87 0.07 0.07
Matches are distributed among these distances:
86 24 0.06
87 1 0.00
89 7 0.02
91 5 0.01
92 324 0.81
93 2 0.01
94 1 0.00
95 4 0.01
98 28 0.07
99 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAG
CACATTGGCACCTTCAAGTCCAATATC
Found at i:74495 original size:141 final size:138
Alignment explanation
Indices: 74110--74697 Score: 557
Period size: 135 Copynumber: 4.3 Consensus size: 138
74100 TTCTAAGCCC
* **
74110 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAACGTAGCTGGCCTTG
1 AATATAGCTGGCATTGAATCAGCATATTGGCA-C--CTTC--TAAGTCCAATATAGCTGGCCTTG
* * * * *
74175 AATCAGCACATTGGCA-C--CTTC---AAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCA
61 AATCAGCATATTGGCACCTTCTTCTATAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
74234 --CCTTTAAGTCC
126 CTCCTTTAAGTCT
* * * * *
74245 AATACAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTG
1 AATATAGCTGGCATTGAATCAGCATATTGGCA-C--CTTC--TAAGTCCAATATAGCTGGCCTTG
* * * * *
74310 AATCAGCACAATGGCA-C--CTTC---AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
61 AATCAGCATATTGGCACCTTCTTCTATAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
74369 CTTTCTTCTTTAAGTCT
126 C--TC--CTTTAAGTCT
* * * *
74386 AATGTAGTTGGCATTGAATCAGCACATTGGCACCTTC-AAGTCCAATATCGCTGGCCTTGAATCA
1 AATATAGCTGGCATTGAATCAGCATATTGGCACCTTCTAAGTCCAATATAGCTGGCCTTGAATCA
* *
74450 GCATATTGGCACCTTCTTCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGG--CTCCT
66 GCATATTGGCACCTTCTTCTATAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTCCT
*
74513 TCAAGTCT
131 TTAAGTCT
* * * * *
74521 AATATCGCTGCCTTTTAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATAGCTGGCATTGAATCAGCATATTGGCACC-T--TC--TAAGTCCAATATAGCTGGCCTTG
* *
74586 AATCAGTATATTGGCACCTTCTTCTATAAGTCCGATGTAGCTGGCCTTGAATCAGCACATTGGCA
61 AATCAGCATATTGGCACCTTCTTCTATAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
74651 --CCTTTAAGTCC
126 CTCCTTTAAGTCT
*
74662 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 AATATAGCTGGCATTGAATCAGCATATTGGCACCTT
74698 TTCCATCTTT
Statistics
Matches: 389, Mismatches: 44, Indels: 37
0.83 0.09 0.08
Matches are distributed among these distances:
135 185 0.48
136 2 0.01
137 2 0.01
138 11 0.03
139 2 0.01
140 2 0.01
141 185 0.48
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (138 bp):
AATATAGCTGGCATTGAATCAGCATATTGGCACCTTCTAAGTCCAATATAGCTGGCCTTGAATCA
GCATATTGGCACCTTCTTCTATAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTCCT
TTAAGTCT
Found at i:74787 original size:55 final size:55
Alignment explanation
Indices: 74652--75016 Score: 230
Period size: 52 Copynumber: 6.6 Consensus size: 55
74642 ACATTGGCAC
* * * * *
74652 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGCCCAATATCGTTGGCCGTGAATCAGCATATTGACATCCTTTTTCTCAT
** * * * ** *
74704 CTTTAAGTTCAATTTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGCCCAATATCGTTGGCCGTGAATCAGCATATTGACATCCTTTTTCTCAT
* *
74759 CTTTGAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGCCCAATATCGTTGGCCGTGAATCAGCATATT-G-A-C---ATC-C-TTT-T--TC-TC
74824 AT
54 AT
* * * * *
74826 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGCCCAATATCGTTGGCCGTGAATCAGCATATTGACATCCTTTTTC-TCAT
* * * * *
74878 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCATATTGGCA---TTTTTCTCAT
1 CTTT-AAGCCCAATATCGTTGGCCGTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * * *
74931 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGCCCAATATCGTTGGCCGTGAATCAGCATATTGACATCCTTTTTCTCAT
74986 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGCCCAATATCGTTGGCCGTGAATCA
75017 ACGTTTTGGT
Statistics
Matches: 247, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 76 0.31
53 43 0.17
54 9 0.04
55 63 0.26
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.15
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGCCCAATATCGTTGGCCGTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:74863 original size:67 final size:68
Alignment explanation
Indices: 74755--74881 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
74745 ATCCTTTTTC
* * * *
74755 TCATCTTTGAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
74819 TCT
66 TCT
* * * *
74822 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
74882 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:74999 original size:227 final size:228
Alignment explanation
Indices: 74670--75096 Score: 610
Period size: 227 Copynumber: 1.9 Consensus size: 228
74660 CCAATATAGC
* * * **
74670 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATTTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
*
74735 GCACATTGACATCCTTTTTCTCATCTTTGAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
74799 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
74863 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
74897 TGGCCTTGAATCAGCATATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCATATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
* *
74960 CAGCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAATCAACGTTTTG
64 CAGCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAATCAACATATTG
* * * * * *
75025 GTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCTAGTGTTGCAGGCCTTGAATCTGCATA
129 GTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATA
75090 GTGGCAC
194 GTGGCAC
75097 ATTGCAATGA
Statistics
Matches: 175, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
226 7 0.04
227 121 0.69
228 47 0.27
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:75540 original size:36 final size:34
Alignment explanation
Indices: 75481--75732 Score: 196
Period size: 36 Copynumber: 7.4 Consensus size: 34
75471 GTGGCGCCTT
*
75481 CTTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* * *
75518 CTTTTAAAGTCCACAACCCCGTGGCACCTTATTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
75552 CTTTT-AAGTCCACGACTCCGTGGCACC---TTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * **
75582 CTTTCAAAGTCCACGACTCTATGGCACC-TTTT-
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
75614 -TTTCAAAGCCCACAACTCCGTGGCACTTTTTTTCC
1 CTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* * *
75649 CTTTTAAAGCCCACAACTCCGTCGTACCTTGTT-
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * **
75682 CTTTTTAAGCCCACAACTTCGTGGCATCTTTCACC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTT-TTC
75717 CTTTCTAAAGCCCACA
1 CTTT-TAAAGCCCACA
75733 CAAGTCGGTG
Statistics
Matches: 176, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
30 7 0.04
31 42 0.24
33 51 0.29
34 6 0.03
35 13 0.07
36 52 0.30
37 5 0.03
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.33
Consensus pattern (34 bp):
CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:75645 original size:31 final size:31
Alignment explanation
Indices: 75457--75647 Score: 161
Period size: 31 Copynumber: 6.0 Consensus size: 31
75447 GACGAATTTT
* * *
75457 AAGTCCACGACTCCGTGGCGCCTTCTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTTTCA
* * *
75488 AAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTTA
1 AAGTCCACAACTCCGTGGCAC-C-TTTT---TTTCA
* *
75524 AAGTCCACAACCCCGTGGCACCTTATTCCTTT-T
1 AAGTCCACAACTCCGTGGCACCTT-TT--TTTCA
* **
75557 AAGTCCACGACTCCGTGGCACCTTCCTTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTTTCA
* **
75588 AAGTCCACGACTCTATGGCACCTTTTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTTTCA
*
75619 AAGCCCACAACTCCGTGGCA-CTTTTTTTC
1 AAGTCCACAACTCCGTGGCACCTTTTTTTC
75648 CCTTTTAAAG
Statistics
Matches: 130, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
30 12 0.09
31 60 0.46
32 1 0.01
33 25 0.19
34 7 0.05
35 3 0.02
36 22 0.17
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (31 bp):
AAGTCCACAACTCCGTGGCACCTTTTTTTCA
Found at i:75697 original size:69 final size:68
Alignment explanation
Indices: 75453--75732 Score: 249
Period size: 69 Copynumber: 4.2 Consensus size: 68
75443 TGGGGACGAA
* * * *
75453 TTTT-AAGTCCACGACTCCGTGGCGCC--TTCTTTTCAAAGCCCATAACTCCGTGGCACTCTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTT
75515 TCCC
65 TCCC
* * * *
75519 TTTTAAAGTCCACAACCCCGTGGCACCTTATTCCTTTT-AAGTCCACGACTCCGTGGCAC-C---
1 TTTTAAAGCCCACAACTCCGTGGCACCTT-TT-CTTTTAAAGCCCACAACTCCGTGGCACTCTTT
75579 TT-CC
64 TTCCC
* * * ** * *
75583 TTTCAAAGTCCACGACTCTATGGCACCTTTT-TTTCAAAGCCCACAACTCCGTGGCACTTTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
75647 CCC
66 CCC
* * * * *
75650 TTTTAAAGCCCACAACTCCGTCGTACCTTGTTCTTTTTAAGCCCACAACTTCGTGGCA-TCTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTT-TTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
*
75714 ACCC
65 TCCC
75718 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
75733 CAAGTCGGTG
Statistics
Matches: 172, Mismatches: 28, Indels: 25
0.76 0.12 0.11
Matches are distributed among these distances:
61 3 0.02
62 19 0.11
63 2 0.01
64 26 0.15
65 2 0.01
66 6 0.03
67 43 0.25
68 13 0.08
69 51 0.30
70 2 0.01
71 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:75705 original size:131 final size:131
Alignment explanation
Indices: 75457--75707 Score: 367
Period size: 131 Copynumber: 1.9 Consensus size: 131
75447 GACGAATTTT
* * *
75457 AAGTCCACGACTCCGTGGCGCCTTCTTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * *
75522 TAAAGTCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTCGCACCTTATTCCTTTTAAGCCCACAACTCCGTGGCACCTTCCTTTC
75587 A
131 A
* * *
75588 AAGTCCACGACTCTATGGCACCTTTTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTT
1 AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * * *
75653 TAAAGCCCACAACTCCGTCGTACCTTGTTCTTTTTAAGCCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTCGCACCTTATTCCTTTTAAGCCCACAACTCCGTGGCA
75708 TCTTTCACCC
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
131 105 1.00
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTCGCACCTTATTCCTTTTAAGCCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:75762 original size:33 final size:33
Alignment explanation
Indices: 75716--75885 Score: 236
Period size: 33 Copynumber: 5.2 Consensus size: 33
75706 CATCTTTCAC
*
75716 CCTT-TCTAAAGCCCACACAAGTCGGTGGAAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
75748 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
75781 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
75814 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
75846 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
75880 CCTTCT
1 CCTTCT
75886 AAGGCCAATA
Statistics
Matches: 122, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
32 7 0.06
33 112 0.92
34 3 0.02
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:76074 original size:92 final size:92
Alignment explanation
Indices: 75935--76939 Score: 1353
Period size: 92 Copynumber: 11.0 Consensus size: 92
75925 CTTCTTCTTT
* * * * * *
75935 AAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATCGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
*
75994 GCCTTGAATCAGCACATTGGCACCTTT
66 GCCTTGAATCAGCACATTGGCACCTTC
**
76021 AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
76086 GCCTTGAATCAGCACATTGGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
76113 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
76178 GCCTTGAATCAGCACATTGGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
*
76205 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
76270 GCCTTGAATCAGCACATTGGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
* * * * *
76297 AAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
* *
76362 GCCTTGAAACAGCATATTGGCACTTTCTTC
66 GCCTTGAATCAGCACATTGGCAC---CTTC
* * * * *
76392 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATCG
1 ---AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAG
* *
76451 CTGGCCTTGAATCAACACATTGGCACCTTT
63 CTGGCCTTGAATCAGCACATTGGCACCTTC
**
76481 AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
*
76546 GCATTGAATCAGCACATTGGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
* * *
76573 AAATCCAATATCCCTAGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
76638 GCCTTGAATCAGCACATTGGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
* *
76665 AAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
76730 GCCTTGAATCAGCACATTGGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
* * * * *
76757 AAGTCTAATATCGCTGACCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTAGCTG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
* *
76822 GCCTTGACTCAGCATATTGGCACCTTTATC
66 GCCTTGAATCAGCACATTGGCACC--T-TC
* * * * * * *
76852 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA----C--CATTAAGTCCAATATAG
1 ---AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAG
*
76911 CTGGCCTTGAATCAGCATATTGGCACCTT
63 CTGGCCTTGAATCAGCACATTGGCACCTT
76940 TTCCATCTTT
Statistics
Matches: 832, Mismatches: 63, Indels: 45
0.89 0.07 0.05
Matches are distributed among these distances:
86 69 0.08
87 2 0.00
89 12 0.01
90 1 0.00
92 672 0.81
94 2 0.00
95 9 0.01
97 1 0.00
98 64 0.08
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (92 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
GCCTTGAATCAGCACATTGGCACCTTC
Found at i:76295 original size:21 final size:21
Alignment explanation
Indices: 76271--76338 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
76261 ATGTAGCTGG
76271 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
76292 CCTTCAAGTCTAATATCACT-G-A
1 CCTTGAA-TC-AGCA-CATTGGCA
*
76314 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCACATTGGCA
76335 CCTT
1 CCTT
76339 CATCTTTAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 2 0.06
20 3 0.09
21 13 0.39
22 9 0.27
23 3 0.09
24 3 0.09
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:76479 original size:21 final size:21
Alignment explanation
Indices: 76412--76479 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
76402 ATGTAGCTGG
*
76412 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAACACATTGGCA
* * **
76433 CCTTCAAGTCTAATATCGCTGG--
1 CCTTGAA-TC-AACA-CATTGGCA
76455 CCTTGAATCAACACATTGGCA
1 CCTTGAATCAACACATTGGCA
76476 CCTT
1 CCTT
76480 TAAGTCCAAT
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 12 0.36
22 8 0.24
23 2 0.06
24 4 0.12
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAACACATTGGCA
Found at i:76756 original size:460 final size:460
Alignment explanation
Indices: 75885--76940 Score: 1909
Period size: 460 Copynumber: 2.3 Consensus size: 460
75875 GCAACCCTTC
* * *
75885 TAAGGCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGACCAATGTAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
*
75950 AGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
76015 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
131 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
* * * *
76080 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
196 TAGCTGGCATTGAATCAGCACATTGGCACCTTCAAATCCAATATCCCTAGCCTTGAATCAGCATA
*
76145 TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTC
261 TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATC
76210 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
326 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
76275 GAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTTC
391 GAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTTC
76340 ATCTT
456 ATCTT
* *
76345 TAAGTCCAATGTAGCTGGCCTTGAAACAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGACCAATGTAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
*
76410 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAACACATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
76475 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
131 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
76540 TAGCTGGCATTGAATCAGCACATTGGCACCTTCAAATCCAATATCCCTAGCCTTGAATCAGCATA
196 TAGCTGGCATTGAATCAGCACATTGGCACCTTCAAATCCAATATCCCTAGCCTTGAATCAGCATA
76605 TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATC
261 TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATC
76670 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
326 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
*
76735 GAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGACCTTGAATCAGCATATTGGCACCTTC
391 GAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTTC
76800 ATCTT
456 ATCTT
* *
76805 TAAGACCAATGTAGCTGGCCTTGACTCAGCATATTGGCACCTTT-ATCTTTAAGTCCAATGTAGC
1 TAAGACCAATGTAGCTGGCCTTGAATCAGCATATTGGCA-CTTTCTTCTTTAAGTCCAATGTAGC
* * * *
76869 TGGCCTTGAATCAGCACATTAGCACCATT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
65 TGGCCTTGAATCAGCACATTGGCACC-TTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTG
76933 GCACCTTT
129 GCACCTTT
76941 TCCATCTTTA
Statistics
Matches: 573, Mismatches: 21, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
460 567 0.99
461 6 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (460 bp):
TAAGACCAATGTAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
TAGCTGGCATTGAATCAGCACATTGGCACCTTCAAATCCAATATCCCTAGCCTTGAATCAGCATA
TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATC
CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
GAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTTC
ATCTT
Found at i:76940 original size:92 final size:94
Alignment explanation
Indices: 76804--76983 Score: 292
Period size: 92 Copynumber: 1.9 Consensus size: 94
76794 ACCTTCATCT
* *
76804 TTAAGACCAATGTAGCTGGCCTTGACTCAGCATATTGGCACC-TTT-ATCTTTAAGTCCAATGTA
1 TTAAGACCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAATGTA
76867 GCTGGCCTTGAATCAGCACATTAGCACCA
66 GCTGGCCTTGAATCAGCACATTAGCACCA
* *
76896 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGT
1 TTAAGACCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAATGT
*
76961 AGCTGGCTTTGAATCAGCACATT
65 AGCTGGCCTTGAATCAGCACATT
76984 CATATCCTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
92 39 0.49
93 3 0.04
95 38 0.47
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (94 bp):
TTAAGACCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTAGCACCA
Found at i:77241 original size:227 final size:228
Alignment explanation
Indices: 76912--77338 Score: 567
Period size: 227 Copynumber: 1.9 Consensus size: 228
76902 CCAATATAGC
* * * **
76912 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
* * *
76977 GCACATTCATATCCTTTTTCTCCTCTTTAACCCCAATATCATTGGCCATGAATCAACATATTGG-
66 GCACACTCACATCCTTTTTCTCATCTTTAACCCCAATATCATTGGCCATGAATCAACATATTGGT
** * * *
77041 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
77105 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
77139 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
* * * *
77202 CAGCACACTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACACTCACATCCTTTTTCTCATCTTT-AACCCCAATATCATTGGCCATGAATCAACATATT
* * * * *
77266 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
77331 AGTGGCAC
193 AGTGGCAC
77339 ATTGCAATGA
Statistics
Matches: 171, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
226 7 0.04
227 114 0.67
228 50 0.29
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACACTCACATCCTTTTTCTCATCTTTAACCCCAATATCATTGGCCATGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:77253 original size:55 final size:52
Alignment explanation
Indices: 77116--77258 Score: 142
Period size: 55 Copynumber: 2.7 Consensus size: 52
77106 GGCACCTTCA
* * * *
77116 TCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTC
1 TCATCTTT-AAACCCAATGTCGTTGGCCGTGAATCAGCACACTGACATTTTTC
* ** * * *
77169 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACACTGACATCCTTTTTC
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACACTGACA---TTTTTC
* *
77224 TCATCTTTGAACCCAATATCGTTGGCCGTGAATCA
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCA
77259 ACGTATTGGT
Statistics
Matches: 69, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
52 29 0.42
53 7 0.10
55 33 0.48
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.34
Consensus pattern (52 bp):
TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACACTGACATTTTTC
Found at i:77774 original size:36 final size:34
Alignment explanation
Indices: 77695--77954 Score: 190
Period size: 31 Copynumber: 7.9 Consensus size: 34
77685 TGAGGACGAA
*
77695 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
*
77724 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTTTT-CC
*
77761 TTTTAAAGTCCACAAC-CTCGTGGCACCTTGTTCC
1 TTTTAAAGTCCACAACTC-CGTGGCACCTTTTTCC
* *
77795 TTTT-AAGTCCACGACTTCGTGGCACC---TTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
* * * *
77825 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
*
77855 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTTTT-CC
* ** *
77892 TTTTAAAGCCCACAACTCTATGGCACCTTGTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
* * * *
77925 TTTTTAAGTCCACGACTTCGTGGCATCTTT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTT
77955 CACCATTTCT
Statistics
Matches: 187, Mismatches: 26, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
29 4 0.02
30 11 0.06
31 58 0.31
32 2 0.01
33 42 0.22
34 6 0.03
35 15 0.08
36 39 0.21
37 10 0.05
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
Found at i:77933 original size:131 final size:131
Alignment explanation
Indices: 77699--77949 Score: 441
Period size: 131 Copynumber: 1.9 Consensus size: 131
77689 GACGAATTTT
77699 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
77764 TAAAGTCCACAACCTCGTGGCACCTTGTTCCTTTTAAGTCCACGACTTCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCTCATGGCACCTTGTTCCTTTTAAGTCCACGACTTCGTGGCACCTTCCTTTC
77829 A
131 A
* *
77830 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
*
77895 TAAAGCCCACAA-CTCTATGGCACCTTGTTCTTTTTAAGTCCACGACTTCGTGGCA
66 TAAAGCCCACAACCTC-ATGGCACCTTGTTCCTTTTAAGTCCACGACTTCGTGGCA
77950 TCTTTCACCA
Statistics
Matches: 114, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
130 3 0.03
131 111 0.97
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCTCATGGCACCTTGTTCCTTTTAAGTCCACGACTTCGTGGCACCTTCCTTTC
A
Found at i:78004 original size:33 final size:33
Alignment explanation
Indices: 77962--78094 Score: 178
Period size: 33 Copynumber: 4.0 Consensus size: 33
77952 TTTCACCATT
77962 TCTAAAGCCCACACAAGTCGGTGGCAAACCTTC
1 TCTAAAGCCCACACAAGTCGGTGGCAAACCTTC
* * * **
77995 TCTAAAGCCCACAAAAGTTGGTGGCAACCCCAC
1 TCTAAAGCCCACACAAGTCGGTGGCAAACCTTC
*
78028 TCTAAAGCCCACACAAGTTGGTGGC-AACCATTC
1 TCTAAAGCCCACACAAGTCGGTGGCAAACC-TTC
* *
78061 TCTAAAGCCCACGCAAGTCGGTGGCAACCCTTC
1 TCTAAAGCCCACACAAGTCGGTGGCAAACCTTC
78094 T
1 T
78095 AAGCCCAATA
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
32 3 0.03
33 80 0.93
34 3 0.03
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (33 bp):
TCTAAAGCCCACACAAGTCGGTGGCAAACCTTC
Found at i:78043 original size:66 final size:66
Alignment explanation
Indices: 77962--78090 Score: 206
Period size: 66 Copynumber: 2.0 Consensus size: 66
77952 TTTCACCATT
*
77962 TCTAAAGCCCACACAAGTCGGTGGCAAACC-TTCTCTAAAGCCCACAAAAGTTGGTGGCAACCCC
1 TCTAAAGCCCACACAAGTCGGTGGC-AACCATTCTCTAAAGCCCACAAAAGTCGGTGGCAACCCC
78026 AC
65 AC
* **
78028 TCTAAAGCCCACACAAGTTGGTGGCAACCATTCTCTAAAGCCCACGCAAGTCGGTGGCAACCC
1 TCTAAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACAAAAGTCGGTGGCAACCC
78091 TTCTAAGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
65 4 0.07
66 54 0.93
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.17
Consensus pattern (66 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACAAAAGTCGGTGGCAACCCCA
C
Found at i:78185 original size:21 final size:21
Alignment explanation
Indices: 78161--78228 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
78151 ATGTAGCTGG
78161 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** **
78182 CCTTCAAGTCTAATATCGCTGGC-
1 CCTTGAA-TC-AGCA-CATTGGCA
78205 -CTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
78225 CCTT
1 CCTT
78229 TAAGTCCAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 11 0.34
22 7 0.22
23 2 0.06
24 5 0.16
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:78283 original size:92 final size:92
Alignment explanation
Indices: 78105--79148 Score: 1404
Period size: 92 Copynumber: 11.3 Consensus size: 92
78095 AAGCCCAATA
* * *
78105 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTAGCTGGCCTTGAATC
1 TAGCTGGCCTTGAATCAGCACATTGGCACC---TTC---AAGTCCAATATCGCTGGCCTTGAATC
* *
78170 AGCACATTGGCA-C--CTTC---AAGTCTAATA
60 AGCATATTGGCACCTTCTTCTTTAAGTCTAATG
* * **
78197 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
78262 TTGGCACCTTCTTCTTTAAGTCTAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
78289 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
78354 TTGGCACCTTCTTCTTTAAGTCTAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
* *
78381 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATCCAATATCGCTGGCCTTAAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
*
78446 TTGGCACCTTCTTCTTTAAGTCCAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
* * *
78473 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
* *
78538 TTGGCACCTTCATCTTTAAGTCCAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
* * *
78565 TAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATC
1 TAGCTGGCCTTGAATCAGCACATTGGCAC---CTTC---AAGTCCAATATCGCTGGCCTTGAATC
* * *
78630 AGGACATTGGCA-C--CTTC---AAGTCTAATA
60 AGCATATTGGCACCTTCTTCTTTAAGTCTAATG
* * **
78657 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
78722 TTGGCACCTTCTTCTTTAAGTCTAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
*
78749 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATCCAATATCGCTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
78814 TTGGCACCTTCTTCTTTAAGTCTAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
* *
78841 TAGCTGGCCTTGAATCAACACATTGGCACCTTCAAATCCAATATCGCTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
*
78906 TTGGCACCTTCTTCTTTAAGTCCAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
* *
78933 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGACCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
* * *
78998 TTGGCACCTTCATCTTTCAGTCCAATG
66 TTGGCACCTTCTTCTTTAAGTCTAATG
* * *
79025 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATC
1 TAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCGCTGGCCTTGAATC
* * * *
79090 AGCACATTGGCA----C--CATTAAGTCCAATA
60 AGCATATTGGCACCTTCTTCTTTAAGTCTAATG
*
79117 TAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTT
79149 TTCCATCTTT
Statistics
Matches: 867, Mismatches: 61, Indels: 51
0.89 0.06 0.05
Matches are distributed among these distances:
86 69 0.08
87 2 0.00
89 14 0.02
91 1 0.00
92 705 0.81
93 1 0.00
94 1 0.00
95 9 0.01
97 1 0.00
98 64 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATA
TTGGCACCTTCTTCTTTAAGTCTAATG
Found at i:78504 original size:21 final size:21
Alignment explanation
Indices: 78480--78547 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
78470 ATGTAGCTGG
78480 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
78501 CCTTCAAGTCTAATATCACT-G-A
1 CCTTGAA-TC-AGCA-CATTGGCA
*
78523 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCACATTGGCA
78544 CCTT
1 CCTT
78548 CATCTTTAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 2 0.06
20 3 0.09
21 13 0.39
22 9 0.27
23 3 0.09
24 3 0.09
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:78965 original size:460 final size:460
Alignment explanation
Indices: 78094--79149 Score: 1963
Period size: 460 Copynumber: 2.3 Consensus size: 460
78084 GCAACCCTTC
* *
78094 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-TTCTTTAAGTCCAATGTAGC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA-CTTTCTTCTTTAAGTCCAATGTAGC
78158 TGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGG
65 TGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGG
78223 CACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAAT
130 CACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAAT
*
78288 GTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCAT
195 GTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATCCAATATCGCTGGCCTTGAATCAGCAT
*
78353 ATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAAT
260 ATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAAT
78418 CCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCT
325 CCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCT
78483 TGAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTT
390 TGAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTT
78548 CATCTT
455 CATCTT
78554 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
*
78619 GGCCTTGAATCAGGACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
78684 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
131 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
78749 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATCCAATATCGCTGGCCTTGAATCAGCATA
196 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATCCAATATCGCTGGCCTTGAATCAGCATA
78814 TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAATC
261 TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAATC
*
78879 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
326 CAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
*
78944 GAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGACCTTGAATCAGCATATTGGCACCTTC
391 GAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTTC
79009 ATCTT
456 ATCTT
* * *
79014 TCAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
* * *
79079 GGCCTTGAATCAGCACATTGGCACCATT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
66 GGCCTTGAATCAGCACATTGGCACC-TTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGG
79143 CACCTTT
130 CACCTTT
79150 TCCATCTTTA
Statistics
Matches: 580, Mismatches: 14, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
459 4 0.01
460 574 0.99
461 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (460 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAATCCAATATCGCTGGCCTTGAATCAGCATA
TTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAATC
CAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
GAATCAGCACATTGGCACCTTCAAGTCTAATATCACTGACCTTGAATCAGCATATTGGCACCTTC
ATCTT
Found at i:79450 original size:227 final size:228
Alignment explanation
Indices: 79121--79540 Score: 562
Period size: 227 Copynumber: 1.8 Consensus size: 228
79111 CCAATATAGC
* * * * **
79121 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACAATGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
* *
79186 GCACATTCACATCCTTTTTCCCCTCTTTAATCCCAATATCATTGGCCGTGAATCAACATA-TTGG
66 GCACATTAACATCCTTTTTCCCATCTTTAATCCCAATATCATTGGCCGTGAATCAACATATTTGG
** * *
79250 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
79314 TAGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TAGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
79348 TGGCCTTGAATCAGCACAATGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACAATGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
* * *
79411 CAGCACATTAACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTAACATCCTTTTTCCCATCTTT-AATCCCAATATCATTGGCCGTGAATCAACATATT
* * * * * *
79475 TGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 TGGCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
79540 A
193 A
79541 GTGGCACATT
Statistics
Matches: 165, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
226 7 0.04
227 111 0.67
228 47 0.28
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACAATGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTAACATCCTTTTTCCCATCTTTAATCCCAATATCATTGGCCGTGAATCAACATATTTGG
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
AGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:80095 original size:31 final size:31
Alignment explanation
Indices: 79909--80097 Score: 164
Period size: 31 Copynumber: 5.9 Consensus size: 31
79899 GACGAATTTT
* *
79909 AAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTGTTTTCA
* * *
79940 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
1 AAGTCCACAACTCCGTGGCAC-C-TTGT---TTTCA
**
79976 AAGTCCACAAC-CTCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTC-CGTGGCACCTTGTT--TTCA
* * **
80009 AAGTCCACGACTTCGTGGCACCTTCCTTTCA
1 AAGTCCACAACTCCGTGGCACCTTGTTTTCA
* * *
80040 AAGTCCGCGACTCTGTGGCACCTTGTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTGTTTTCA
*
80071 AAGCCCACAACTCCGTGGCACCTTGTT
1 AAGTCCACAACTCCGTGGCACCTTGTT
80098 CTTTTTAAGT
Statistics
Matches: 127, Mismatches: 22, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
31 71 0.56
32 1 0.01
33 28 0.22
34 3 0.02
35 2 0.02
36 22 0.17
ACGTcount: A:0.19, C:0.34, G:0.16, T:0.30
Consensus pattern (31 bp):
AAGTCCACAACTCCGTGGCACCTTGTTTTCA
Found at i:80120 original size:95 final size:98
Alignment explanation
Indices: 79905--80123 Score: 293
Period size: 95 Copynumber: 2.2 Consensus size: 98
79895 TGAGGACGAA
* * *
79905 TTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TTTTAAGTCCACGACTTCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTTGT--
* *
79970 CTTTTAAAGTCCACAACCTCGTGGCACCTTGTTCC
64 CTTTCAAAGCCCACAACCTCGTGGCACCTTGTTCC
* * * *
80005 TTTTAAGTCCACGACTTCGTGGCACCTTCCTTTCAAAGTCCGCGACTCTGTGGCAC-C-TTGT-T
1 TTTTAAGTCCACGACTTCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTTGTCT
*
80067 TTCAAAGCCCACAA-CTCCGTGGCACCTTGTTCT
66 TTCAAAGCCCACAACCT-CGTGGCACCTTGTTCC
80100 TTTTAAGTCCACGACTTCGTGGCA
1 TTTTAAGTCCACGACTTCGTGGCA
80124 TCTTTCACCC
Statistics
Matches: 108, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
94 2 0.02
95 52 0.48
98 3 0.03
99 1 0.01
100 50 0.46
ACGTcount: A:0.19, C:0.33, G:0.16, T:0.32
Consensus pattern (98 bp):
TTTTAAGTCCACGACTTCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTTGTCT
TTCAAAGCCCACAACCTCGTGGCACCTTGTTCC
Found at i:80178 original size:33 final size:32
Alignment explanation
Indices: 80132--80307 Score: 198
Period size: 33 Copynumber: 5.5 Consensus size: 32
80122 CATCTTTCAC
80132 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
*
80163 TCCTTCTCTAAAGCCCATACAAGTCGGTGGCAAA
1 -CCTTCTCTAAAGCCCACACAAGTCGGTGGC-AA
* * *
80197 CCTTCCCTACAGCCCACACAAGTTGGTGGCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
** * *
80229 CCCACTCTAAAGCCCCCACAAGTTGG-GGCCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGG-CAA
*
80261 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAA
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAA
*
80294 CCCT-TCT-AAGCCCA
1 CCTTCTCTAAAGCCCA
80308 ATATAGCTGG
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
30 7 0.06
31 5 0.04
32 33 0.27
33 74 0.60
34 4 0.03
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (32 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:80276 original size:65 final size:65
Alignment explanation
Indices: 80132--80296 Score: 208
Period size: 65 Copynumber: 2.5 Consensus size: 65
80122 CATCTTTCAC
** *
80132 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAATCCTTCTCTAAAGCCCATACAAGTCGGTGGCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA-CCCACTCTAAAGCCCACACAAGTCGGTGGCAA
80196 A
65 A
* * * * * *
80197 CCTTCCCTACAGCCCACACAAGTTGGTGGCAACCCACTCTAAAGCCCCCACAAGTTGG-GGCCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCACTCTAAAGCCCACACAAGTCGGTGGCAAA
*
80261 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAACCC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAACCC
80297 TTCTAAGCCC
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
64 7 0.08
65 54 0.64
66 24 0.28
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.18
Consensus pattern (65 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCACTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:80409 original size:43 final size:44
Alignment explanation
Indices: 80295--80799 Score: 570
Period size: 43 Copynumber: 11.1 Consensus size: 44
80285 CGGTGGCAAC
*
80295 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
80339 CCTTCTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCA
1 CCTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
80385 CCTTC-AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
80428 CCTT-TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * **
80471 CCTTCTTCTTGAAGTCTAATGTAGCTGGCCTTGAATCAGCGCATTGGCA
1 -C--CTTC-T-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
80520 CCTTC-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
80563 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCT
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
80612 CCCTC-AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
80655 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA
1 CC-T--TC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
80704 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
80753 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
80796 CCTT
1 CCTT
80800 TTCCATCTTT
Statistics
Matches: 396, Mismatches: 41, Indels: 49
0.81 0.08 0.10
Matches are distributed among these distances:
43 180 0.45
44 7 0.02
46 59 0.15
48 4 0.01
49 143 0.36
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (44 bp):
CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:80529 original size:92 final size:91
Alignment explanation
Indices: 80296--80799 Score: 598
Period size: 92 Copynumber: 5.5 Consensus size: 91
80286 GGTGGCAACC
* * * *
80296 CTTC-TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATGTAG
1 CTTCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC---AAGTCCAATATAG
* *
80360 TTGGCCTTGAATCAGCACATTGGCA-C--
63 CTGGCCTTGAATCAGCATATTGGCACCTT
* * * * *
80386 CTTC--AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAACTG
1 CTTCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTG
80449 GCCTTGAATCAGCATATTGGCACCTT
66 GCCTTGAATCAGCATATTGGCACCTT
* * *
80475 CTTCTTGAAGTCTAATGTAGCTGGCCTTGAATCAGCGCATTGGCACCTTCAAGTCCAATATCGCT
1 CTTCTT-AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCT
80540 GGCCTTGAATCAGCATATTGGCACCTT
65 GGCCTTGAATCAGCATATTGGCACCTT
* * * *
80567 CTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCTCCCTCAAGTCTAATATCGCT
1 CTTC-TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCT
80632 GGCCTTGAATCAGCATATTGGCACCTT
65 GGCCTTGAATCAGCATATTGGCACCTT
* *
80659 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
1 CTTC-TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAAT
* * *
80724 GTAGCTGGCCTTGAATTAGCACATTGGCA-C--
59 ATAGCTGGCCTTGAATCAGCATATTGGCACCTT
* *
80754 C-T-TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 CTTCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
80800 TTCCATCTTT
Statistics
Matches: 371, Mismatches: 30, Indels: 27
0.87 0.07 0.06
Matches are distributed among these distances:
86 34 0.09
87 1 0.00
89 45 0.12
90 4 0.01
91 1 0.00
92 244 0.66
93 3 0.01
94 1 0.00
95 4 0.01
97 1 0.00
98 33 0.09
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (91 bp):
CTTCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTG
GCCTTGAATCAGCATATTGGCACCTT
Found at i:80689 original size:141 final size:137
Alignment explanation
Indices: 80300--80799 Score: 615
Period size: 141 Copynumber: 3.6 Consensus size: 137
80290 GCAACCCTTC
* * * * *
80300 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATGTAGTTGGC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCTTCAAGTCCAATATAGCTGGC
* *
80365 CTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA--
65 CTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC
80428 --C--CTT
130 TTCTTCTT
* * * *
80432 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTGAAGTCTAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCTTC---AAGTCCAATATAGCT
* * *
80497 GGCCTTGAATCAGCGCATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
62 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC
80562 ACCTTCTTCTT
127 ACCTTCTTCTT
* * * *
80573 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCTCC-C-TCAAGTCTAATATCGCTGGCC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTTCAAGTCCAATATAGCTGGCC
* * *
80636 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
66 TTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
80701 GCACCTTCTTCTT
125 GCACCTTCTTCTT
* *
80714 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCT-TT-AAGTCCAATATAGCTGGCC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTTCAAGTCCAATATAGCTGGCC
*
80777 TTGAATCAGCATATTGGCACCTT
66 TTGAATCAGCACATTGGCACCTT
80800 TTCCATCTTT
Statistics
Matches: 329, Mismatches: 22, Indels: 28
0.87 0.06 0.07
Matches are distributed among these distances:
132 44 0.13
135 112 0.34
136 1 0.00
138 5 0.02
139 2 0.01
140 1 0.00
141 163 0.50
142 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (137 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTTCAAGTCCAATATAGCTGGCC
TTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCT
TCTTCTT
Found at i:80833 original size:52 final size:55
Alignment explanation
Indices: 80754--81091 Score: 194
Period size: 52 Copynumber: 6.1 Consensus size: 55
80744 ACATTGGCAC
* *
80754 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
* * * * *
80806 CTTTAAGTTCAGTGTAGCTGGCTTTGAATCAGCACATTGACATCTTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
* * * * * * *
80861 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATCTCTTTTCTCA---T
* * *
80925 CAACTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-C-C--TTCATCAT
1 ---CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTC-TCAT
** * * * * *
80980 CTTTAAAACCCAATGTTGTTGCCCTTGAATCAGCACATTGGCA--T-TTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
* * * * * *
81033 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATC-CTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCTC-TTTTCTCAT
81088 CTTT
1 CTTT
81092 GAACCGAATA
Statistics
Matches: 221, Mismatches: 41, Indels: 45
0.72 0.13 0.15
Matches are distributed among these distances:
52 70 0.32
53 40 0.18
54 8 0.04
55 44 0.20
56 1 0.00
57 4 0.02
58 4 0.02
59 1 0.00
60 1 0.00
61 12 0.05
64 2 0.01
66 1 0.00
67 33 0.15
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
Found at i:81115 original size:227 final size:228
Alignment explanation
Indices: 80775--81198 Score: 561
Period size: 227 Copynumber: 1.9 Consensus size: 228
80765 ATATAGCTGG
* * * * **
80775 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAGTGTAGCTGGCTTTGAATCAGCA
1 CCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCAGCA
* * *
80840 CATTGACATCTTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-CAT
66 CATTGACATCCTTTTTCTCATCTTTAAGCCCAATACCGTTGCCCGTGAATCAACATATTGGTCAT
** * * *
80904 CTTTATCACTTTTC-TCATCTTCAACTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGG
131 -TTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGTGG
80968 CACCTTCATCATCTTTAAAACCCAATGTTGTTGC
195 CACCTTCATCATCTTTAAAACCCAATGTTGTTGC
* *
81002 CCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAATCAG
1 CCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAATCAG
* *
81065 CACATTGACATCCTTTTTCTCATCTTTGAA-CCGAATACCGTTGCCCGTGAATCAACGTATTGGT
64 CACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATACCGTTGCCCGTGAATCAACATATTGGT
* * * * * *
81129 CCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCATAGT
128 CATTTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
81194 GGCAC
193 GGCAC
81199 ATTGCAATGA
Statistics
Matches: 168, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
226 7 0.04
227 112 0.67
228 49 0.29
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (228 bp):
CCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCAGCA
CATTGACATCCTTTTTCTCATCTTTAAGCCCAATACCGTTGCCCGTGAATCAACATATTGGTCAT
TTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGTGGC
ACCTTCATCATCTTTAAAACCCAATGTTGTTGC
Found at i:81609 original size:31 final size:31
Alignment explanation
Indices: 81568--81781 Score: 144
Period size: 31 Copynumber: 6.5 Consensus size: 31
81558 TTAAGTCCAT
*
81568 AACTCTGTGGCACCTTCTTTTCAAAGCCCAC
1 AACTCCGTGGCACCTTCTTTTCAAAGCCCAC
* *
81599 AACTCCGTGGCGCTCTTTTTCCCTTTT-AAAGTCCAC
1 AACTCCGTGGCAC-C---TT--CTTTTCAAAGCCCAC
* * * ** *
81635 AACCCCATGGCACCTTGTTCCTTTTAAGTCCAC
1 AACTCCGTGGCACCTTCTT--TTCAAAGCCCAC
* * * *
81668 GACTCCGTGGCACCTTCCTTTCAAAGTCCGC
1 AACTCCGTGGCACCTTCTTTTCAAAGCCCAC
* *
81699 GACTCTGTGGCACCTTCTTTTCAAAGCCCAC
1 AACTCCGTGGCACCTTCTTTTCAAAGCCCAC
*
81730 AACTCCGTAGCACTCTTTTTCCCTTTT-AAAGCCCAC
1 AACTCCGTGGCAC-C---TT--CTTTTCAAAGCCCAC
81766 AACTCCGTGGCACCTT
1 AACTCCGTGGCACCTT
81782 ATTCTTTTTA
Statistics
Matches: 144, Mismatches: 24, Indels: 29
0.73 0.12 0.15
Matches are distributed among these distances:
30 2 0.01
31 57 0.40
32 8 0.06
33 22 0.15
35 6 0.04
36 39 0.27
37 10 0.07
ACGTcount: A:0.20, C:0.36, G:0.14, T:0.30
Consensus pattern (31 bp):
AACTCCGTGGCACCTTCTTTTCAAAGCCCAC
Found at i:81635 original size:36 final size:34
Alignment explanation
Indices: 81584--81835 Score: 189
Period size: 36 Copynumber: 7.4 Consensus size: 34
81574 GTGGCACCTT
*
81584 CTTTTCAAAGCCCACAACTCCGTGGCGCTCTTTTTCC
1 CTTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* * * *
81621 CTTTTAAAGTCCACAACCCCATGGCACCTTGTTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
81655 CTTTT-AAGTCCACGACTCCGTGGCACC---TTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * * *
81685 CTTTCAAAGTCCGCGACTCTGTGGCACC---TT-
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
81715 CTTTTCAAAGCCCACAACTCCGTAGCACTCTTTTTCC
1 CTTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-C
*
81752 CTTTTAAAGCCCACAACTCCGTGGCACCTTATT-
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * * **
81785 CTTTTTAAGTCCACAACTTCGTGGCATCTTTCACC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTT-TTC
81820 CTTTCTAAAGCCCACA
1 CTTT-TAAAGCCCACA
81836 CAAGTCGGTG
Statistics
Matches: 176, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
30 11 0.06
31 39 0.22
32 1 0.01
33 45 0.26
34 6 0.03
35 16 0.09
36 48 0.27
37 10 0.06
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (34 bp):
CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:81736 original size:131 final size:131
Alignment explanation
Indices: 81569--81810 Score: 403
Period size: 131 Copynumber: 1.8 Consensus size: 131
81559 TAAGTCCATA
* * *
81569 ACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCGCTCTTTTTCCCTTTTAAAGTCCA
1 ACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTAGCACTCTTTTTCCCTTTTAAAGCCCA
* *
81634 CAACCCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCGC
66 CAACCCCATGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCCGC
81699 G
131 G
81700 ACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTAGCACTCTTTTTCCCTTTTAAAGCCCA
1 ACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTAGCACTCTTTTTCCCTTTTAAAGCCCA
* * * *
81765 CAACTCCGTGGCACCTTATTCTTTTTAAGTCCACAACTTCGTGGCA
66 CAACCCCATGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCA
81811 TCTTTCACCC
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 102 1.00
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (131 bp):
ACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTAGCACTCTTTTTCCCTTTTAAAGCCCA
CAACCCCATGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCCGC
G
Found at i:81829 original size:69 final size:67
Alignment explanation
Indices: 81568--81835 Score: 228
Period size: 69 Copynumber: 4.0 Consensus size: 67
81558 TTAAGTCCAT
* * * * *
81568 AACTCTGTGGCACC--TTCTTTTCAAAGCCCACAACTCCGTGGCGCTCTTTTTCCCTTTTAAAGT
1 AACTCCGTGGCACCTTTTCTTTT-TAAGTCCACAACTCCGTGGC-ATCTTTTTCCCTTTTAAAGC
81631 CCAC
64 CCAC
* * * * * * *
81635 AACCCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCA-C--CTT-CCTTTCAAAGTC
1 AACTCCGTGGCACCTT-TTCTTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCCTTTTAAAGCC
*
81696 CGC
65 CAC
* * * * *
81699 GACTCTGTGGCACC--TTCTTTTCAAAGCCCACAACTCCGTAGCACTCTTTTTCCCTTTTAAAGC
1 AACTCCGTGGCACCTTTTCTTTT-TAAGTCCACAACTCCGTGGCA-TCTTTTTCCCTTTTAAAGC
81762 CCAC
64 CCAC
* **
81766 AACTCCGTGGCACCTTATTCTTTTTAAGTCCACAACTTCGTGGCATCTTTCACCCTTTCTAAAGC
1 AACTCCGTGGCACCTT-TTCTTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCCTTT-TAAAGC
81831 CCAC
64 CCAC
81835 A
1 A
81836 CAAGTCGGTG
Statistics
Matches: 156, Mismatches: 32, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
61 6 0.04
62 17 0.11
64 24 0.15
65 2 0.01
66 2 0.01
67 36 0.23
68 11 0.07
69 45 0.29
70 13 0.08
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (67 bp):
AACTCCGTGGCACCTTTTCTTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCCTTTTAAAGCCC
AC
Found at i:81865 original size:33 final size:33
Alignment explanation
Indices: 81819--81988 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
81809 CATCTTTCAC
81819 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
81851 CCTTCTCTAAAGCCCACACAAGTCAGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
81884 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
81917 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
81949 CCATTCTCTAAAGCCCACGCAAGTCGGTTGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
81983 CCTTCT
1 CCTTCT
81989 AAGCCCAATA
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
32 7 0.06
33 110 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.35, G:0.17, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:82065 original size:49 final size:48
Alignment explanation
Indices: 81988--82544 Score: 579
Period size: 49 Copynumber: 11.9 Consensus size: 48
81978 GCAACCCTTC
* * *
81988 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TTTTCTT
* *
82037 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTA-C----CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
* * *
82080 TAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCA-C----CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
* *
82123 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTT
* *
82172 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
* * *
82216 -AAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTT
*
82264 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
* * * *
82308 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTT
* *
82356 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTT
* *
82405 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA-C----CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
*
82448 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TTT---TCTT
* ** * * *
82500 TAAGTTCAACGTAGCTGGCTTTGAATCAGCACATTGACATCTTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTT
82545 TTCTCATCTT
Statistics
Matches: 432, Mismatches: 49, Indels: 55
0.81 0.09 0.10
Matches are distributed among these distances:
43 185 0.43
44 2 0.00
46 11 0.03
48 3 0.01
49 191 0.44
51 3 0.01
52 37 0.09
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
Found at i:82097 original size:43 final size:43
Alignment explanation
Indices: 82034--82491 Score: 493
Period size: 43 Copynumber: 10.1 Consensus size: 43
82024 GCACCTTTTT
* *
82034 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
82077 CTTTAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
82120 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
82167 TTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
82212 CTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
82259 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
82304 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
82351 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
82400 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
82445 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
82488 CTTT
1 CTTT
82492 TCCATCTTTA
Statistics
Matches: 357, Mismatches: 40, Indels: 36
0.82 0.09 0.08
Matches are distributed among these distances:
43 192 0.54
45 3 0.01
47 3 0.01
49 159 0.45
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:82173 original size:92 final size:91
Alignment explanation
Indices: 82034--82491 Score: 576
Period size: 92 Copynumber: 5.0 Consensus size: 91
82024 GCACCTTTTT
* * * * * *
82034 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG----TAC-CTTTAAGTCTAATATCG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTTTAAGTCCAATGTAG
*
82094 CTGGCCTTGAATCAGCACATTAGCAC
66 CTGGCCTTGAATCAGCACATTGGCAC
* *
82120 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTTTAAGTCCAATGTA
82185 GCTGGCCTTGAATCAGCACATTGGCAC
65 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
82212 CTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTTTAAGTCCAATGTA
82277 GCTGGCCTTGAATCAGCACATTGGCAC
65 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
82304 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTTTAAGTCCAATGTA
*
82369 GCTGGCCTTGAATCAGCATATTGGCACCTTC
65 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
82400 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C-CTTTAAGTCCAATAT
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTTTAAGTCCAATGT
*
82460 AGCTGGCCTTGAATCAGCATATTGGCAC
64 AGCTGGCCTTGAATCAGCACATTGGCAC
82488 CTTT
1 CTTT
82492 TCCATCTTTA
Statistics
Matches: 337, Mismatches: 23, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
86 41 0.12
88 1 0.00
90 2 0.01
92 255 0.76
94 1 0.00
96 1 0.00
98 36 0.11
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (91 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCAC
Found at i:82373 original size:141 final size:141
Alignment explanation
Indices: 81988--82535 Score: 574
Period size: 141 Copynumber: 3.9 Consensus size: 141
81978 GCAACCCTTC
* * * * * *
81988 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---TTC---AAGTCTAATATAGCT
* * * * * *
82053 GGCCTTGAATCAGCACATTGG-----T-ACCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCAC
60 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAT
*
82112 ATTAGCA----C--CTT
125 ATTGGCACCTTCTTCTT
* * * *
82123 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATAGCT
* * * *
82188 GGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCGCTGGCCTTGAGTCAGCAT
60 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAT
82247 ATTGGCACCTTCTTCTT
125 ATTGGCACCTTCTTCTT
*
82264 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATAGCTGGCCTT
82329 GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGC
66 GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGC
82394 ACCTTCTTCTT
131 ACCTTCTTCTT
* * *
82405 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATAGCTGGCCTT
* * * *
82470 GAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAACGTAGCTGGCTTTGAATCAGCACATT
66 GAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATT
82535 G
128 G
82536 ACATCTTTTT
Statistics
Matches: 365, Mismatches: 26, Indels: 35
0.86 0.06 0.08
Matches are distributed among these distances:
135 148 0.41
136 2 0.01
138 8 0.02
139 2 0.01
140 1 0.00
141 164 0.45
143 2 0.01
144 38 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (141 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGC
ACCTTCTTCTT
Found at i:82524 original size:52 final size:55
Alignment explanation
Indices: 82445--82782 Score: 167
Period size: 52 Copynumber: 6.1 Consensus size: 55
82435 ACATTGGCAC
* * *
82445 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CTTTTC-CAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
* * * *
82497 CTTTAAGTTCAACGTAGCTGGCTTTGAATCAGCACATTGACATCTTTTTTCTCAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
* * * * * * * *
82552 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATCTCTTTTCTCA---T
* * * *
82616 CAACTTTAAGTCCAATATTGCTGGCCTTGAATCAGCAGATTGGCA-C-C--TTCATCAT
1 ---CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTC-TCAT
** ** * * *
82671 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA--T-TTTTCTCAT
1 CTTT-AAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
* * ** * * *
82724 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATC-CTTTTTCTCAT
1 CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCTC-TTTTCTCAT
82779 CTTT
1 CTTT
82783 GAACCCAATA
Statistics
Matches: 221, Mismatches: 41, Indels: 45
0.72 0.13 0.15
Matches are distributed among these distances:
52 70 0.32
53 41 0.19
54 8 0.04
55 44 0.20
56 1 0.00
57 4 0.02
58 4 0.02
59 1 0.00
60 1 0.00
61 12 0.05
64 2 0.01
66 1 0.00
67 32 0.14
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAACATAGCTGGCCTTGAATCAGCACATTGACATCTCTTTTCTCAT
Found at i:82792 original size:227 final size:228
Alignment explanation
Indices: 82463--82876 Score: 568
Period size: 227 Copynumber: 1.8 Consensus size: 228
82453 CCAATATAGC
* * * **
82463 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAACGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAACGTAGCTGACCGTGAATCA
* * *
82528 GCACATTGACATCTTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATACCGTTGCCCGTGAATCAACATATTGGT
** * *
82592 CATCTTTATCACTTTTC-TCATCTTCAACTTTAAGTCCAATATTGCTGGCCTTGAATCAGCAGAT
131 CAT-TTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAGAT
82656 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
82690 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AACGTAGCTGACCGTGAAT
*
82753 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATACCGTTGCCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATACCGTTGCCCGTGAATCAACATATT
* * * * *
82817 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATC
128 GGTCATTTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATC
82877 TGTATAGTGG
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
226 7 0.04
227 116 0.72
228 38 0.24
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAACGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATACCGTTGCCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAGATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:83326 original size:36 final size:33
Alignment explanation
Indices: 83245--83505 Score: 193
Period size: 31 Copynumber: 7.9 Consensus size: 33
83235 GTGGGGATGA
** *
83245 CTTTT-AAGTCCATGACTCTGTGGCACC--TT-
1 CTTTTAAAGTCCACAACTCCGTGGCACCTTTTC
* * *
83274 CTTTTCAAAGCCCACAACTCCATGGCGCTCTTTTTCC
1 CTTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTT-C
* *
83311 CTTTTAAAGTCCACAACCCCATGGCACCTTGTTC
1 CTTTTAAAGTCCACAACTCCGTGGCACCTT-TTC
*
83345 CTTTT-AAGTCCACGACTCCGTGGCACC--TTC
1 CTTTTAAAGTCCACAACTCCGTGGCACCTTTTC
* * * *
83375 CTTTCAAAGTCCGCGACTCTGTGGCACC--TT-
1 CTTTTAAAGTCCACAACTCCGTGGCACCTTTTC
*
83405 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTT-C
*
83442 CTTTTAAAGCCCACAACTCCGTGGCACCTTGTT-
1 CTTTTAAAGTCCACAACTCCGTGGCACCTT-TTC
* * *
83475 CTTTTTAAGTCCACAACTTCGTGGCATCTTT
1 CTTTTAAAGTCCACAACTCCGTGGCACCTTT
83506 CACCCTTTCT
Statistics
Matches: 190, Mismatches: 24, Indels: 33
0.77 0.10 0.13
Matches are distributed among these distances:
29 5 0.03
30 11 0.06
31 55 0.29
32 3 0.02
33 45 0.24
34 10 0.05
35 10 0.05
36 41 0.22
37 10 0.05
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (33 bp):
CTTTTAAAGTCCACAACTCCGTGGCACCTTTTC
Found at i:83425 original size:131 final size:131
Alignment explanation
Indices: 83258--83500 Score: 414
Period size: 131 Copynumber: 1.9 Consensus size: 131
83248 TTAAGTCCAT
* *
83258 GACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCGCTCTTTTTCCCTTTTAAAGTCC
1 GACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTTTAAAGCCC
*
83323 ACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCG
66 ACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCCG
83388 C
131 C
*
83389 GACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCC
1 GACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTTTAAAGCCC
* * * *
83454 ACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 ACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
83501 TCTTTCACCC
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 104 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (131 bp):
GACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTTTAAAGCCC
ACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCCG
C
Found at i:83550 original size:33 final size:33
Alignment explanation
Indices: 83509--83678 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
83499 CATCTTTCAC
83509 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
83541 CCTTCTCTAAAGCCCACACAAGTCAGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
83574 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** * *
83607 CCCACTCTAAAGCCCATACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
83639 CCATTCTCTAAAGCCCACGCAAGTCGGTTGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
83673 CCTTCT
1 CCTTCT
83679 AAGCCCAATA
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
32 7 0.06
33 108 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:83867 original size:92 final size:92
Alignment explanation
Indices: 83724--84543 Score: 853
Period size: 92 Copynumber: 8.9 Consensus size: 92
83714 GCACCTTTTT
* * * * * *
83724 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTA-C--CTTC---AAGTCTAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
*
83783 GCTGGCCTTGAATCAGCACATTAGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
** *
83810 CTTTAAGTCCAATATAATTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
83875 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
83902 CTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
83967 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
83994 CTTCT-AGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
*
84058 AGCTGGCCTTGAATCAGCACATTGGTAC
65 AGCTGGCCTTGAATCAGCACATTGGCAC
* * * * * **
84086 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCA----C--CTTTAAGTCCAAAATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
* *
84145 ACTGGCCTTGAATCAGCATATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
84176 TTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
* * *
84235 TCGCTGGCCTTGAGTCAGCATATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
84268 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--T-AGTCTAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
* *
84327 TCGCTGGCCTTGAATCAGCATATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
84360 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
84425 TAGCTGGCCTTGAATCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
84454 CATTAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAAT
*
84519 GTAGCTGGCTTTGAATCAGCACATT
63 GTAGCTGGCCTTGAATCAGCACATT
84544 CACATCCTTT
Statistics
Matches: 657, Mismatches: 50, Indels: 45
0.87 0.07 0.06
Matches are distributed among these distances:
86 74 0.11
87 1 0.00
88 1 0.00
89 4 0.01
90 1 0.00
92 494 0.75
93 2 0.00
94 3 0.00
95 43 0.07
97 1 0.00
98 33 0.05
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:84270 original size:319 final size:319
Alignment explanation
Indices: 83685--84543 Score: 1468
Period size: 319 Copynumber: 2.7 Consensus size: 319
83675 TTCTAAGCCC
* * **
83685 AATATAGCTGGCCCTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
83750 AATCAGCACATTGGTACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCACCTTTA
66 AATCAGCACATTGGTACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCACCTTTA
*
83815 AGTCCAATATAATTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGG
131 AGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGG
83880 CCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCAC
196 CCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCAC
83945 CTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTAGTCT
261 CTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTAGTCT
84004 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
84069 AATCAGCACATTGGTACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCACCTTTA
66 AATCAGCACATTGGTACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCACCTTTA
*
84134 AGTCCAAAATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGG
131 AGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGG
84199 CCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCAC
196 CCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCAC
84264 CTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTAGTCT
261 CTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTAGTCT
84323 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* * * * * *
84388 AATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
66 AATCAGCACATTGGTACC-T--TC---AAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCA
* * * *
84453 CCATTAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTTTCCATCTTTAAGT-TCA
125 CCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCT-A
*
84517 ATGTAGCTGGCTTTGAATCAGCACATT
186 ATGTAGCTGGCCTTGAATCAGCACATT
84544 CACATCCTTT
Statistics
Matches: 512, Mismatches: 18, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
319 394 0.77
320 1 0.00
322 2 0.00
325 75 0.15
327 3 0.01
328 37 0.07
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (319 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
AATCAGCACATTGGTACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCACCTTTA
AGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGG
CCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCAC
CTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTAGTCT
Found at i:84801 original size:227 final size:228
Alignment explanation
Indices: 84472--84890 Score: 562
Period size: 227 Copynumber: 1.8 Consensus size: 228
84462 CCAATATAGC
* * * **
84472 TGGCCTTGAATCAACATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAACACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
84537 GCACATTCACATCCTTTTTCTCCTCTTTAACCCCAATATCATTGGCCGTGAATCAACATATTGG-
66 GCACATTCACATCCTTTTTCTCCTCTTTAACCCCAATATCATTGGCCGTGAATCAACATATTGGT
** * *
84601 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
84665 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * * *
84699 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAACACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
* * *
84762 CAGCACATTGACATCCTTTTT-TCCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTAT
64 CAGCACATTCACATCCTTTTTCTCC-TCTTT-AACCCCAATATCATTGGCCGTGAATCAACATAT
* * * * *
84825 TGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCA
127 TGGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCA
84890 T
192 T
84891 CGTGGCACAT
Statistics
Matches: 165, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
226 10 0.06
227 112 0.68
228 43 0.26
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAACACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTCACATCCTTTTTCTCCTCTTTAACCCCAATATCATTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:85334 original size:36 final size:34
Alignment explanation
Indices: 85255--85534 Score: 176
Period size: 31 Copynumber: 8.4 Consensus size: 34
85245 GTGAGGACTA
* *
85255 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
85284 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* *
85321 TTTTAAAGTCCACAAC-CTCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTC-CGTGGCACCTTTTTCC
* ** *
85355 TTTTAAA-TCCATGACTTCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
85385 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
85415 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* *
85452 TTTTAAAGCCCACAACTCCGGGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
85485 TTTTTAAGTCCACGACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
85520 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
85535 CAAGTTGGTG
Statistics
Matches: 199, Mismatches: 31, Indels: 35
0.75 0.12 0.13
Matches are distributed among these distances:
29 4 0.02
30 14 0.07
31 54 0.27
32 2 0.01
33 39 0.20
34 9 0.05
35 19 0.10
36 48 0.24
37 10 0.05
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:85379 original size:33 final size:35
Alignment explanation
Indices: 85283--85509 Score: 128
Period size: 36 Copynumber: 6.7 Consensus size: 35
85273 GTGGCACCTT
* *
85283 CTTTTCAAAGCCCACAA-CTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGTCCACAACCT-CGTGGCAC-CTTGTTCC
85320 CTTTTAAAGTCCACAACCTCGTGGCACCTTGTT-C
1 CTTTTAAAGTCCACAACCTCGTGGCACCTTGTTCC
** *
85354 CTTTTAAA-TCCATGACTTCGTGGCACC---TT-C
1 CTTTTAAAGTCCACAACCTCGTGGCACCTTGTTCC
* * *
85384 CTTTCAAAGTCCGCGA-CTCTGTGGCACC---TT--
1 CTTTTAAAGTCCACAACCTC-GTGGCACCTTGTTCC
* *
85414 CTTTTCAAAGCCCACAA-CTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGTCCACAACCT-CGTGGCAC-CTTGTTCC
* *
85451 CTTTTAAAGCCCACAA-CTCCGGGGCACCTTGTT--
1 CTTTTAAAGTCCACAACCT-CGTGGCACCTTGTTCC
* * *
85484 CTTTTTAAGTCCACGACTTCGTGGCA
1 CTTTTAAAGTCCACAACCTCGTGGCA
85510 TCTTTCACCC
Statistics
Matches: 158, Mismatches: 20, Indels: 28
0.77 0.10 0.14
Matches are distributed among these distances:
30 16 0.10
31 32 0.20
32 2 0.01
33 35 0.22
34 10 0.06
35 12 0.08
36 39 0.25
37 12 0.08
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.32
Consensus pattern (35 bp):
CTTTTAAAGTCCACAACCTCGTGGCACCTTGTTCC
Found at i:85502 original size:131 final size:131
Alignment explanation
Indices: 85259--85509 Score: 423
Period size: 131 Copynumber: 1.9 Consensus size: 131
85249 GGACTATTTT
85259 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
85324 TAAAGTCCACAACCTCGTGGCACCTTGTTCCTTTTAAATCCATGACTTCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCTCGGGGCACCTTGTTCCTTTTAAATCCACGACTTCGTGGCACCTTCCTTTC
85389 A
131 A
* *
85390 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
85455 TAAAGCCCACAA-CTCCGGGGCACCTTGTTCTTTTTAAGTCCACGACTTCGTGGCA
66 TAAAGCCCACAACCT-CGGGGCACCTTGTTCCTTTTAAATCCACGACTTCGTGGCA
85510 TCTTTCACCC
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
130 2 0.02
131 110 0.98
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCTCGGGGCACCTTGTTCCTTTTAAATCCACGACTTCGTGGCACCTTCCTTTC
A
Found at i:85528 original size:69 final size:69
Alignment explanation
Indices: 85255--85534 Score: 228
Period size: 69 Copynumber: 4.2 Consensus size: 69
85245 GTGAGGACTA
* * * *
85255 TTTT-AAGTCCACGACTCCGTGGCACC---TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTT-TAAGTCCACAACTCCGTGGCACTCTTT
85316 TTCCC
65 TTCCC
* * * ** *
85321 TTTTAAAGTCCACAAC-CTCGTGGCACCTTGTTCCTTTTAAATCCATGACTTCGTGGCAC-C---
1 TTTTAAAGCCCACAACTC-CGTGGCACCTTGTTCTTTTTAAGTCCACAACTCCGTGGCACTCTTT
85381 TT-CC
65 TTCCC
* * * * * * *
85385 TTTCAAAGTCCGCGACTCTGTGGCACC---TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTT-TAAGTCCACAACTCCGTGGCACTCTTT
85447 TTCCC
65 TTCCC
* * * *
85452 TTTTAAAGCCCACAACTCCGGGGCACCTTGTTCTTTTTAAGTCCACGACTTCGTGGCA-TCTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTCCGTGGCACTCTTTT
*
85516 ACCC
66 TCCC
85520 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
85535 CAAGTTGGTG
Statistics
Matches: 167, Mismatches: 31, Indels: 29
0.74 0.14 0.13
Matches are distributed among these distances:
61 6 0.04
62 16 0.10
63 1 0.01
64 23 0.14
65 3 0.02
66 7 0.04
67 42 0.25
68 12 0.07
69 44 0.26
70 13 0.08
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (69 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTCCGTGGCACTCTTTT
TCCC
Found at i:85564 original size:33 final size:33
Alignment explanation
Indices: 85518--85687 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
85508 CATCTTTCAC
85518 CCTT-TCTAAAGCCCACACAAGTTGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
*
85550 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* * *
85583 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
**
85616 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* * * *
85648 CCATTCTCTAAAGCCCACGCAAGTCGGTTGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTTGGTGGCAAA
85682 CCTTCT
1 CCTTCT
85688 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
32 7 0.06
33 109 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
Found at i:85764 original size:49 final size:48
Alignment explanation
Indices: 85687--86293 Score: 634
Period size: 49 Copynumber: 12.9 Consensus size: 48
85677 GCAACCCTTC
* * *
85687 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC-TTTTCTT
* *
85736 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACC--TTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
* * * * *
85780 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATTAGCA-C----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
* **
85822 TAAGTCCAATATAATTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
* *
85871 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
* * *
85915 -AAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
*
85963 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
* * * *
86007 T-AGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
86055 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
*
86104 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
* *
86153 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA-C----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
* * *
86196 TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCTCCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC-TTT---TCTT
* * * * *
86248 TAAGTTCAATGTAGCTGGCTTTGAATAAGCACATTGACATCCTTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA-CCTTTT
86294 TCTCATCTTT
Statistics
Matches: 471, Mismatches: 56, Indels: 62
0.80 0.10 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 172 0.37
44 3 0.01
46 14 0.03
48 2 0.00
49 239 0.51
52 37 0.08
53 2 0.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (48 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
Found at i:85876 original size:92 final size:92
Alignment explanation
Indices: 85733--86292 Score: 729
Period size: 92 Copynumber: 6.0 Consensus size: 92
85723 GCACCTTTTT
* * * * * *
85733 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTA-C--CTTC---AAGTCTAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
*
85792 GCTGGCCTTGAATCAGCACATTAGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
** *
85819 CTTTAAGTCCAATATAATTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
85884 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
85911 CTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
85976 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
86003 CTTCT-AGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
*
86067 AGCTGGCCTTGAATCAGCATATTGGCACCTTC
65 AGCTGGCCTTGAATCAGCACATTGGCA----C
* *
86099 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
*
86164 TAGCTGGCCTTGAATTAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
86193 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCTCCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAAT
* * *
86258 GTAGCTGGCTTTGAATAAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
86289 CTTT
1 CTTT
86293 TTCTCATCTT
Statistics
Matches: 421, Mismatches: 35, Indels: 26
0.87 0.07 0.05
Matches are distributed among these distances:
86 37 0.09
87 1 0.00
89 4 0.01
92 247 0.59
94 3 0.01
95 40 0.10
96 6 0.01
97 1 0.00
98 82 0.19
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Done.