Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1652
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 199341
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
File 2 of 4
Found at i:86072 original size:141 final size:143
Alignment explanation
Indices: 85687--86283 Score: 662
Period size: 141 Copynumber: 4.3 Consensus size: 143
85677 GCAACCCTTC
* * * * * *
85687 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCTTC-TTAAGTCTAATGTAGCT
* * * *
85752 GGCCTTGAATCAGCACATTGGTACCT-TC---AAGTCTAATATCGCTGGCCTTGAATCAGCACAT
64 GGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
85813 TAGCA----C--CTT
129 TGGCACCTTCTTCTT
* ** *
85822 TAAGTCCAATATAATTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCTTC-TTAAGTCTAATGTAGCT
* *
85887 GGCCTTGAATCAGCACATTGGCACCT-TC---AAGTCCAATATCGCTGGCCTTGAGTCAGCATAT
64 GGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
85948 TGGCACCTTCTTCTT
129 TGGCACCTTCTTCTT
* *
85963 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC-T-AGTCTAATATCGCTGG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTTCTTAAGTCTAATGTAGCTGG
* *
86024 CCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATAT
66 CCTTGAATCAGCACATTGGCACC-TC-TCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
86089 TGGCACCTTCTTCTT
129 TGGCACCTTCTTCTT
* * *
86104 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCTTC-TTAAGTCTAATGTAGCT
* *
86169 GGCCTTGAATTAGCACATTGGCA---C-CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATAT
64 GGCCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
* *
86230 TGGCTCCTTTTCCATCTT
129 TGGCACC--TT-CTTCTT
* * *
86248 TAAGTTCAATGTAGCTGGCTTTGAATAAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
86284 ACATCCTTTT
Statistics
Matches: 405, Mismatches: 36, Indels: 33
0.85 0.08 0.07
Matches are distributed among these distances:
135 156 0.39
136 2 0.00
138 6 0.01
139 1 0.00
140 1 0.00
141 161 0.40
142 1 0.00
143 3 0.01
144 41 0.10
146 1 0.00
147 32 0.08
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (143 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTTCTTAAGTCTAATGTAGCTGG
CCTTGAATCAGCACATTGGCACCTCTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
GCACCTTCTTCTT
Found at i:86272 original size:52 final size:55
Alignment explanation
Indices: 86193--86530 Score: 203
Period size: 52 Copynumber: 6.1 Consensus size: 55
86183 ACATTGGCAC
* *
86193 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-TCC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCATCCTTTTTCTCAT
* * * * *
86245 CTTTAAGTTCAATGTAGCTGGCTTTGAATAAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCATCCTTTTTCTCAT
* * * * *
86300 CTTTAAGCCCAATATCGTTGGCTGTGAATCAACATATTGGCATCTTTATCACTTTTCGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGG---C---ATC-CTTTT----TC-TC
86365 AT
54 AT
* *
86367 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCATCCTTTTTC-TCAT
** * * * *
86419 CTTTAAAACCCAATGTTGTTGGCTTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCATCCTTTTTCTCAT
* * * * * ** * *
86472 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTT-TCCAT
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCATCCTTTTTCT-CAT
86527 CTTT
1 CTTT
86531 GAACCCAATA
Statistics
Matches: 222, Mismatches: 41, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
52 73 0.33
53 42 0.19
54 9 0.04
55 44 0.20
56 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 5 0.02
64 1 0.00
66 2 0.01
67 38 0.17
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCATCCTTTTTCTCAT
Found at i:86404 original size:67 final size:68
Alignment explanation
Indices: 86296--86422 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 68
86286 ATCCTTTTTC
* * *
86296 TCATCTTTAAGCCCAATATCGTTGGCTGTGAATCAACATATTGGCATCTTTATCA-CTTTTCGCA
1 TCATCTTTAAGCCCAATATCGCTGGCTGTGAATCAACATATTGGCACCTTCATCATCTTTTCGCA
86360 TCT
66 TCT
* * *
86363 TCATCTTTAAGTCCAATATTGCTGGCCT-TGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGG-CTGTGAATCAACATATTGGCACCTTCATCATCTTT
86423 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
67 46 0.88
68 6 0.12
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCTGTGAATCAACATATTGGCACCTTCATCATCTTTTCGCA
TCT
Found at i:86540 original size:227 final size:227
Alignment explanation
Indices: 86211--86629 Score: 553
Period size: 227 Copynumber: 1.8 Consensus size: 227
86201 CCAATATAGC
* * * **
86211 TGGCCTTGAATCAGCATATTGGCTCCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATAA
1 TGGCCTTGAATCAGCACATTGGCT-CTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATAA
*
86276 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCTGTGAATCAACATATTGG-
65 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * *
86340 CATCTTTATCACTTTTC-GCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
130 CAT-TTTATCACTCGTCAGCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
86404 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
194 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
86438 TGGCTTTGAATCAGCACATTGGCAT-TTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGC-TCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
* *
86501 CAGCACATTGACATCCTTTTT-TCCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTAT
63 AAGCACATTGACATCCTTTTTCT-CATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATAT
* * * * * *
86564 TGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCA
126 TGGTCATTTTATCACTCGTCAGCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCA
86629 T
191 T
86630 CGTGGCACAT
Statistics
Matches: 165, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
226 8 0.05
227 114 0.69
228 43 0.26
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (227 bp):
TGGCCTTGAATCAGCACATTGGCTCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATAAG
CACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGTC
ATTTTATCACTCGTCAGCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATTG
GCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:87074 original size:36 final size:34
Alignment explanation
Indices: 86995--87241 Score: 196
Period size: 31 Copynumber: 7.5 Consensus size: 34
86985 TGGGGACGAA
* *
86995 TTTT-AAGTCCACGACTCCGTGGCACC---TTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * * *
87025 TTTTAAAGCCCACAACTTCGTGGCACTATTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
*
87061 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
*
87095 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * * * * *
87125 TTTCAAAGTTCGCGACTCTGTGGCACC---AT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* *
87155 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
*
87192 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
*
87225 TTTTTAAGTCCACAACT
1 TTTTAAAGTCCACAACT
87242 TTGTGGCATC
Statistics
Matches: 176, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
30 15 0.09
31 55 0.31
32 1 0.01
33 36 0.20
34 6 0.03
35 12 0.07
36 46 0.26
37 5 0.03
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
Found at i:87249 original size:131 final size:131
Alignment explanation
Indices: 87006--87241 Score: 391
Period size: 131 Copynumber: 1.8 Consensus size: 131
86996 TTTAAGTCCA
* * * *
87006 CGACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTTCGTGGCACTATTTTTCCCTTTTAAAGTC
1 CGACTCCGTGGCACCATCTTTTCAAAGCCCACAACTCCGTGGCACTATTTTTCCCTTTTAAAGCC
*
87071 CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTTC
66 CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTTC
87136 G
131 G
* *
87137 CGACTCTGTGGCACCATCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
1 CGACTCCGTGGCACCATCTTTTCAAAGCCCACAACTCCGTGGCACTATTTTTCCCTTTTAAAGCC
* *
87202 CACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACT
66 CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACT
87242 TTGTGGCATC
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 96 1.00
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (131 bp):
CGACTCCGTGGCACCATCTTTTCAAAGCCCACAACTCCGTGGCACTATTTTTCCCTTTTAAAGCC
CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTTC
G
Found at i:87299 original size:33 final size:33
Alignment explanation
Indices: 87258--87427 Score: 236
Period size: 33 Copynumber: 5.2 Consensus size: 33
87248 CATCTTTCAC
87258 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
87290 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
87323 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
87356 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
87388 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
87422 CCTTCT
1 CCTTCT
87428 AAGCCCAATA
Statistics
Matches: 121, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
32 7 0.06
33 111 0.92
34 3 0.02
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:87491 original size:49 final size:49
Alignment explanation
Indices: 87427--88115 Score: 793
Period size: 49 Copynumber: 14.7 Consensus size: 49
87417 GCAACCCTTC
* *
87427 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
87476 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * * *
87520 -AAGTCTAATATCGCTGGCCTTGAATTAGCACATTGG---C-TC--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
87562 TAAGTCCAATATAACTGGCCTTGAATCAGCGTATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
87611 TAAGTCTAATGTAGCTGGCCTTGAATCAGCATATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
87655 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
87703 TAAGTCCAATGTAGCTGGCCTTGAATCCGTACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
87747 -AAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
87795 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
87839 T-AGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
87887 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
87936 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
87985 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
88028 TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * *
88080 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
88116 ACATCCTTTT
Statistics
Matches: 546, Mismatches: 57, Indels: 71
0.81 0.08 0.11
Matches are distributed among these distances:
40 1 0.00
41 1 0.00
42 1 0.00
43 200 0.37
44 4 0.01
45 1 0.00
46 28 0.05
47 2 0.00
48 5 0.01
49 268 0.49
50 1 0.00
52 34 0.06
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:87630 original size:92 final size:92
Alignment explanation
Indices: 87473--88124 Score: 886
Period size: 92 Copynumber: 7.0 Consensus size: 92
87463 GCACCTTCTT
* * * * *
87473 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
* *
87532 GCTGGCCTTGAATTAGCACATTGGCTC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
87559 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCGTATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
*
87624 GCTGGCCTTGAATCAGCATATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
87651 CTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
* *
87716 GCTGGCCTTGAATCCGTACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
87743 CTTCAAGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
87808 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
87835 CTTCT-AGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
*
87899 AGCTGGCCTTGAATCAGCATATTGGCACCTTC
65 AGCTGGCCTTGAATCAGCACATTGGCA----C
* *
87931 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
*
87996 TAGCTGGCCTTGAATTAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
88025 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAAT
* *
88090 GTAGCTGGCTTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
88121 CTTT
1 CTTT
88125 TTCTCATCTT
Statistics
Matches: 508, Mismatches: 40, Indels: 26
0.89 0.07 0.05
Matches are distributed among these distances:
86 38 0.07
87 1 0.00
89 4 0.01
92 333 0.66
94 3 0.01
95 40 0.08
96 6 0.01
97 1 0.00
98 82 0.16
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:87653 original size:21 final size:21
Alignment explanation
Indices: 87629--87696 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
87619 ATGTAGCTGG
87629 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
*
87650 CCTTCAAGTC--CAATATCGCTGG--
1 CCTTGAA-TCAGC-ATAT---TGGCA
87672 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
87693 CCTT
1 CCTT
87697 CTTCTTTAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 18
0.64 0.04 0.32
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 16 0.44
22 12 0.33
23 1 0.03
24 3 0.08
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:87814 original size:141 final size:141
Alignment explanation
Indices: 87427--88115 Score: 706
Period size: 141 Copynumber: 4.9 Consensus size: 141
87417 GCAACCCTTC
* * * *
87427 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATATAGCT
* * * * *
87492 GGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATCGCTGGCCTTGAATTAGCAC
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
87551 ATTGG---C-TC--CTT
125 ATTGGCACCTTCTTCTT
* * ** * *
87562 TAAGTCCAATATAACTGGCCTTGAATCAGCGTATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATATAGCT
* * *
87627 GGCCTTGAATCAGCATATTGGCA-C--CTTC---AAGTCCAATATCGCTGGCCTTGAATCAGCAT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
87686 ATTGGCACCTTCTTCTT
125 ATTGGCACCTTCTTCTT
* * *
87703 TAAGTCCAATGTAGCTGGCCTTGAATCCGTACATTGGCACCTTCAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
*
87768 GAGTCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
66 GAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
87833 A-C--CTTC--
131 ACCTTCTTCTT
* * * * *
87839 T-AGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATAGCT
*
87903 GGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
87968 ATTGGTACCTTCTTCTT
125 ATTGGCACCTTCTTCTT
* * *
87985 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTAGGTCCAATATAGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
* * *
88050 GAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATT
66 GAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT
88115 G
128 G
88116 ACATCCTTTT
Statistics
Matches: 483, Mismatches: 44, Indels: 45
0.84 0.08 0.08
Matches are distributed among these distances:
135 188 0.39
136 3 0.01
138 15 0.03
139 2 0.00
140 2 0.00
141 191 0.40
142 1 0.00
143 2 0.00
144 43 0.09
146 2 0.00
147 34 0.07
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (141 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
ACCTTCTTCTT
Found at i:88104 original size:52 final size:53
Alignment explanation
Indices: 88025--88178 Score: 175
Period size: 52 Copynumber: 2.9 Consensus size: 53
88015 ACATTGGCAC
* *
88025 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * *
88077 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCA-CC-TTTTCTCAT
* * * * * *
88132 CTTTAAGCCCAATATCGTTGGCTGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTT
88179 ATCACTTTTC
Statistics
Matches: 83, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
52 36 0.43
53 5 0.06
54 6 0.07
55 36 0.43
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:88236 original size:67 final size:68
Alignment explanation
Indices: 88128--88254 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 68
88118 ATCCTTTTTC
* * *
88128 TCATCTTTAAGCCCAATATCGTTGGCTGTGAATCAACATATTGGCATCTTTATCA-CTTTTCGCA
1 TCATCTTTAAGCCCAATATCGCTGGCTGTGAATCAACATATTGGCACCTTCATCATCTTTTCGCA
88192 TCT
66 TCT
* * *
88195 TCATCTTTAAGTCCAATATTGCTGGCCT-TGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGG-CTGTGAATCAACATATTGGCACCTTCATCATCTTT
88255 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
67 46 0.88
68 6 0.12
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCTGTGAATCAACATATTGGCACCTTCATCATCTTTTCGCA
TCT
Found at i:88372 original size:227 final size:228
Alignment explanation
Indices: 88043--88461 Score: 571
Period size: 227 Copynumber: 1.8 Consensus size: 228
88033 CCAATATAGC
* * * **
88043 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
*
88108 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCTGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * *
88172 CATCTTTATCACTTTTC-GCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCAGCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
88236 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
88270 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
88333 CAGCACATTGACATCCTTTTT-TCCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTAT
64 CAGCACATTGACATCCTTTTTCT-CATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATAT
* * * * * *
88396 TGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCA
127 TGGTCATTTTATCACTCGTCAGCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCA
88461 T
192 T
88462 CGTGGCACAT
Statistics
Matches: 166, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
226 8 0.05
227 116 0.70
228 42 0.25
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCAGCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:88906 original size:36 final size:34
Alignment explanation
Indices: 88827--89081 Score: 203
Period size: 31 Copynumber: 7.7 Consensus size: 34
88817 TGGGGACGAA
* *
88827 TTTT-AAGTCCACGACTCCGTGGCACC---TTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * *
88857 TTTTAAAGCCCACAACTCCGTGGCACTATTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
*
88893 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
*
88927 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * * ** *
88957 TTTCAAAGTCCGCGACTCTATGGCACC---AT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * *
88987 TTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
*
89024 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* *
89057 TTTTTAAGTCCACAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
89082 TCTTTCACCC
Statistics
Matches: 185, Mismatches: 26, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
30 15 0.08
31 57 0.31
32 1 0.01
33 43 0.23
34 6 0.03
35 12 0.06
36 46 0.25
37 5 0.03
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
Found at i:89065 original size:131 final size:131
Alignment explanation
Indices: 88831--89081 Score: 394
Period size: 131 Copynumber: 1.9 Consensus size: 131
88821 GACGAATTTT
* * * *
88831 AAGTCCACGACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTATTTTTCCCTTT
1 AAGTCCACGACTCCATGGCACCATCTTTTCAAAGCCCACAACTCCATGGCACTATTTTTCCCTTT
* *
88896 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
88961 A
131 A
* * *
88962 AAGTCCGCGACTCTATGGCACCATCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCATGGCACCATCTTTTCAAAGCCCACAACTCCATGGCACTATTTTTCCCTTT
* * *
89027 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
89082 TCTTTCACCC
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 108 1.00
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.30
Consensus pattern (131 bp):
AAGTCCACGACTCCATGGCACCATCTTTTCAAAGCCCACAACTCCATGGCACTATTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:89131 original size:33 final size:33
Alignment explanation
Indices: 89090--89259 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
89080 CATCTTTCAC
89090 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
89122 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** **
89155 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAGC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
89188 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
89220 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
89254 CCTTCT
1 CCTTCT
89260 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
32 6 0.05
33 110 0.92
34 3 0.03
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:89323 original size:49 final size:49
Alignment explanation
Indices: 89259--90038 Score: 863
Period size: 49 Copynumber: 16.7 Consensus size: 49
89249 GCAACCCTTC
* *
89259 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
89308 TAAGTCCAATGTAGCTGGCCTTGAATCAGCAGATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
89352 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGG---C-TC--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
89394 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTACTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
89443 TAAGTCTAATGTAGCTGGCCTTGAATCAGCATTTTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
89487 -AAGGCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
89534 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * * *
89578 -AAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCTTCTA
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
89626 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
89670 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
89718 TAAGTCCAATGTAGCTGTCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
89767 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
89811 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
89859 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
89908 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
89951 TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * *
90003 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
90039 ACATCCTTTT
Statistics
Matches: 618, Mismatches: 69, Indels: 85
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.00
41 1 0.00
42 1 0.00
43 236 0.38
44 4 0.01
45 4 0.01
46 30 0.05
47 2 0.00
48 38 0.06
49 266 0.43
50 1 0.00
52 34 0.06
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:89449 original size:92 final size:91
Alignment explanation
Indices: 89305--90047 Score: 876
Period size: 92 Copynumber: 8.0 Consensus size: 91
89295 GCACCTTCTT
* * * * *
89305 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAGATTGGCA-C-CTTC---AAGTCTAATATCG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATGTAG
*
89365 CTGGCCTTGAATCAGCACATTGGCTC
66 CTGGCCTTGAATCAGCACATTGGCAC
* *
89391 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTACTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT-CTTCTTTAAGTCCAATGTA
**
89456 GCTGGCCTTGAATCAGCATTTTGGCAC
65 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
89483 CTTCAAGGCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTTTAAGTCCAATGTAG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATGTAG
89548 CTGGCCTTGAATCAGCACATTGGCAC
66 CTGGCCTTGAATCAGCACATTGGCAC
* * * * *
89574 CTTCAAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCTTCTATAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATGTA
89639 GCTGGCCTTGAATCAGCACATTGGCAC
65 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
89666 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATGTA
* *
89731 GCTGTCCTTGAATCAGCATATTGGCACCTTC
65 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
89762 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC---AAGTCTAATAT
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATGT
* *
89822 CGCTGGCCTTGAATCAGCATATTGGCACCTTC
64 AGCTGGCCTTGAATCAGCACATTGGCA----C
* *
89854 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATG
*
89919 TAGCTGGCCTTGAATTAGCACATTGGCAC
63 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
89948 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC---T-CTTCTTTAAGTCCAAT
* *
90013 GTAGCTGGCTTTGAATCAGCACATTGACATC
62 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
90044 CTTT
1 CTTT
90048 TTCTCATCTT
Statistics
Matches: 582, Mismatches: 52, Indels: 36
0.87 0.08 0.05
Matches are distributed among these distances:
86 39 0.07
87 1 0.00
89 4 0.01
91 83 0.14
92 327 0.56
93 1 0.00
94 3 0.01
95 47 0.08
96 6 0.01
97 1 0.00
98 70 0.12
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (91 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCAC
Found at i:90027 original size:52 final size:55
Alignment explanation
Indices: 89948--90312 Score: 230
Period size: 52 Copynumber: 6.6 Consensus size: 55
89938 ACATTGGCAC
* * *
89948 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
90000 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
90055 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
*
90120 AA
54 AT
* * *
90122 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * *
90174 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
90227 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
90282 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCA
90313 ATGTATTGGT
Statistics
Matches: 246, Mismatches: 44, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 75 0.30
53 42 0.17
54 9 0.04
55 64 0.26
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.15
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:90083 original size:55 final size:54
Alignment explanation
Indices: 89956--90312 Score: 226
Period size: 55 Copynumber: 6.4 Consensus size: 54
89946 ACCTTTAGGT
* * * *
89956 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTTTC-CATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
90008 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAGC
* * * * *
90063 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAACTTTAA
1 CCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C---A-C-CTTTT-TC-TC---ATCTTTAA
*
90128 GT
53 GC
* * * *
90130 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTC-TCATCTTT-AAGC
* * * * * *
90183 CCAATGTTGTTGGCCTTGAATCAGCACATTGGCA--TTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
90235 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-C
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTT-AAGC
* *
90290 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCTTGAATCA
90313 ATGTATTGGT
Statistics
Matches: 240, Mismatches: 42, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 64 0.27
53 42 0.17
54 8 0.03
55 69 0.29
56 4 0.02
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 5 0.02
63 2 0.01
64 3 0.01
66 1 0.00
67 34 0.14
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
Found at i:90227 original size:53 final size:52
Alignment explanation
Indices: 90130--90312 Score: 152
Period size: 53 Copynumber: 3.4 Consensus size: 52
90120 AACTTTAAGT
* * * **
90130 CCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC-TCATCTTT-AAAC
* * * * * **
90183 CCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTCTCATCTTTAAAC
* * * * *
90235 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAAC
1 CCAATATCGCTGGCCGTGAATCAGCACATTGGCA---TTTTTCTCATCTTTAAAC
*
90290 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCGTGAATCA
90313 ATGTATTGGT
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
52 30 0.29
53 38 0.37
54 3 0.03
55 33 0.32
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.34
Consensus pattern (52 bp):
CCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTCTCATCTTTAAAC
Found at i:90295 original size:227 final size:228
Alignment explanation
Indices: 89966--90392 Score: 612
Period size: 227 Copynumber: 1.9 Consensus size: 228
89956 CCAATATAGC
* * * **
89966 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
90031 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
90095 CATCTTTATCACTTTTC-TCATCTTCAACTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
90159 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
90193 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
**
90256 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAATGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * *
90320 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAATGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
90385 AGTGGCAC
193 AGTGGCAC
90393 ATTGCAGTGA
Statistics
Matches: 176, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
226 7 0.04
227 119 0.68
228 50 0.28
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:90837 original size:36 final size:34
Alignment explanation
Indices: 90750--91029 Score: 210
Period size: 31 Copynumber: 8.4 Consensus size: 34
90740 TGGGGATGAA
* *
90750 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
90779 TTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * *
90816 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
90850 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * *
90880 TTTCAAAGTCCACGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
90910 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
90947 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
90980 TTTTTAAGTCCAAAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
91015 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
91030 CAAGTCGGTG
Statistics
Matches: 205, Mismatches: 27, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
29 4 0.02
30 11 0.05
31 60 0.29
32 2 0.01
33 45 0.22
34 6 0.03
35 18 0.09
36 49 0.24
37 10 0.05
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:90988 original size:131 final size:131
Alignment explanation
Indices: 90754--90991 Score: 431
Period size: 131 Copynumber: 1.8 Consensus size: 131
90744 GATGAATTTT
*
90754 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
*
90819 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
90884 A
131 A
*
90885 AAGTCCACGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
90950 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCA
90992 AAACTTCGTG
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
131 102 1.00
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
A
Found at i:91059 original size:33 final size:33
Alignment explanation
Indices: 91011--91182 Score: 256
Period size: 33 Copynumber: 5.2 Consensus size: 33
91001 GGCATCTTTC
91011 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
91043 AACCTTCTCTAAAGCCCACAAAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
91076 AACCTTCCCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
** *
91109 ACCCCACTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
91142 ACCCTTCTCTAAAGCCCACGCAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
91175 ACCCTTCT
1 ACCCTTCT
91183 AAGCCCAAGA
Statistics
Matches: 126, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
32 5 0.04
33 121 0.96
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:91247 original size:49 final size:49
Alignment explanation
Indices: 91182--91637 Score: 474
Period size: 49 Copynumber: 9.7 Consensus size: 49
91172 GCAACCCTTC
* *
91182 TAAGCCCAAGATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
91231 TAAGTCCAATGTAGCTGGCCATGAATCAGCATATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
91275 -AAGTCTAATATCGCTGGCCCTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
91317 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
91366 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
91410 -AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
91458 TAAGTCCAATGTAGCTAGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
91507 TAAGTCCAATTTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
91550 TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * *
91602 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
91638 ACGTCCTTTT
Statistics
Matches: 339, Mismatches: 44, Indels: 45
0.79 0.10 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 137 0.40
44 1 0.00
45 1 0.00
46 11 0.03
47 1 0.00
48 2 0.01
49 149 0.44
50 1 0.00
52 34 0.10
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:91293 original size:43 final size:44
Alignment explanation
Indices: 91177--91592 Score: 435
Period size: 43 Copynumber: 9.1 Consensus size: 44
91167 CGGTGGCAAC
* *
91177 CCTTCTAAGCCCAAGATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
91221 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCATGAATCAGCATATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
91270 CCTTC-AAGTCTAATATCGCTGGCCCTGAATCAGCACATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
91313 CCTT-TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
91356 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
91405 CCTTC-AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
91448 CCTTCATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCATATTGGTA
1 CC-T--TC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
91497 CCTTCTTCTTTAAGTCCAATTTAGCTGGCCTTGAATTAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
91546 CCTT-TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
91589 CCTT
1 CCTT
91593 TTCCATCTTT
Statistics
Matches: 314, Mismatches: 37, Indels: 42
0.80 0.09 0.11
Matches are distributed among these distances:
43 144 0.46
44 2 0.01
45 1 0.00
46 16 0.05
47 4 0.01
48 3 0.01
49 141 0.45
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:91373 original size:92 final size:89
Alignment explanation
Indices: 91228--91593 Score: 402
Period size: 92 Copynumber: 4.0 Consensus size: 89
91218 GCACCTTCTT
* * * *
91228 CTTTAAGTCCAATGTAGCTGGCCATGAATCAGCATATTGGCACCTTC---AAGTCTAATATCGCT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAGCT
*
91290 GGCCCTGAATCAGCACATTGGCAC
66 GGCCTTGAATCAGCACATTGGCAC
* * *
91314 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--CTTCTTTAAGTCCAATATA
91379 GCTGGCCTTGAATCAGCACATTGGCAC
63 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
91406 CTTCAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T--TCTTTAAGTCCAATATA
* * *
91471 GCTAGCCTTGAATCAGCATATTGGTACCTTC
63 GCTGGCCTTGAATCAGCACATTGG---C-AC
* * * *
91502 TTCTTTAAGTCCAATTTAGCTGGCCTTGAATTAGCACATTGGCA-C--CTTTAGGTCCAATATAG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAG
*
91564 CTGGCCTTGAATCAGCATATTGGCAC
64 CTGGCCTTGAATCAGCACATTGGCAC
91590 CTTT
1 CTTT
91594 TCCATCTTTA
Statistics
Matches: 242, Mismatches: 23, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
86 43 0.18
87 1 0.00
88 1 0.00
89 6 0.02
90 1 0.00
91 1 0.00
92 149 0.62
95 1 0.00
96 1 0.00
97 1 0.00
98 37 0.15
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (89 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAGCT
GGCCTTGAATCAGCACATTGGCAC
Found at i:91682 original size:55 final size:55
Alignment explanation
Indices: 91555--91911 Score: 196
Period size: 52 Copynumber: 6.4 Consensus size: 55
91545 ACCTTTAGGT
* * * * * *
91555 CCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CATCTTTAAGT
1 CCAATATCGTTGGCCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
* * * * ** *
91607 TCAATGTAGCTGGCTTTGAATCAGCACATTGACGTCCTTTTTCTCATCTTTAAGC
1 CCAATATCGTTGGCCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
* * *
91662 CCAATATCGTTTGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAA
1 CCAATATCGTTGGCCGTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TCATCTTTAA
*
91727 GT
54 GC
* * * * * *
91729 CCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCATCTTTAAAAC
1 CCAATATCGTTGGCCGTGAATCAGCACATTGACATCCTTTTTC-TCATCTTT-AAGC
* * ** * * *
91782 CCAATGTTGTTGGCTTTGAATCAGCACATTGGCA---TTTTTCTCATCTTCAAGT
1 CCAATATCGTTGGCCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
* * * *
91834 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-C
1 CCAATATCGTTGGCCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AAGC
91889 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGTTGGCCGTGAATCA
91912 ACGTATTAGT
Statistics
Matches: 235, Mismatches: 47, Indels: 43
0.72 0.14 0.13
Matches are distributed among these distances:
52 67 0.29
53 41 0.17
54 9 0.04
55 63 0.27
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 3 0.01
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.15
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (55 bp):
CCAATATCGTTGGCCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
Found at i:91758 original size:67 final size:68
Alignment explanation
Indices: 91650--91776 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
91640 GTCCTTTTTC
* * * *
91650 TCATCTTTAAGCCCAATATCGTTTGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
91714 TCT
66 TCT
* * * *
91717 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
91777 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:91894 original size:227 final size:228
Alignment explanation
Indices: 91565--91983 Score: 569
Period size: 227 Copynumber: 1.8 Consensus size: 228
91555 CCAATATAGC
* * * **
91565 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
* *
91630 GCACATTGACGTCCTTTTTCTCATCTTTAAGCCCAATATCGTTTGCCGTGAATCAACATATT-GG
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
** * * *
91694 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTGAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
91758 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
91792 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
91855 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * * *
91919 AGTCCTTTTATCACTCGTCATCCTCATCATCTTGAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 AGGCATTTTATCACTCGTCATCATCATCATCTTGAAGTCCAATATTGCAGGCCTTGAATCAGCAT
91984 CGTGGCACAT
Statistics
Matches: 165, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
226 7 0.04
227 115 0.70
228 43 0.26
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
CATTTTATCACTCGTCATCATCATCATCTTGAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:92398 original size:31 final size:31
Alignment explanation
Indices: 92349--92603 Score: 192
Period size: 31 Copynumber: 7.8 Consensus size: 31
92339 TGGGGACGAA
* * *
92349 TTTT-AAGTCCACGACTCCGTCGCACCTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
92379 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C---TT-CC
* **
92415 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACC---TTCC
*
92449 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
* * * *
92479 TTTCAAAGTCCGCGACTCTGTGGCACCTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
92509 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C---TT-CC
* *
92546 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
1 TTTTAAAGTCCACAACTCCGTGGCACC-T-TCC
* *
92579 TTTTTAAGTCCACAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
92604 TCTTTCACCC
Statistics
Matches: 185, Mismatches: 25, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
30 15 0.08
31 58 0.31
32 2 0.01
33 43 0.23
34 7 0.04
35 10 0.05
36 45 0.24
37 5 0.03
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (31 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTCC
Found at i:92428 original size:36 final size:34
Alignment explanation
Indices: 92379--92628 Score: 203
Period size: 36 Copynumber: 7.4 Consensus size: 34
92369 CGCACCTTCT
92379 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * ** *
92415 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
92449 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
92479 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
92509 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
92546 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
92579 TTTTTAAGTCCACAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
92614 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
92629 CAAGTCGGTG
Statistics
Matches: 176, Mismatches: 27, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
30 11 0.06
31 40 0.23
32 1 0.01
33 44 0.25
34 6 0.03
35 16 0.09
36 53 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:92469 original size:69 final size:68
Alignment explanation
Indices: 92349--92628 Score: 263
Period size: 69 Copynumber: 4.2 Consensus size: 68
92339 TGGGGACGAA
* * * * *
92349 TTTT-AAGTCCACGACTCCGTCGCACCTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
92412 CCC
66 CCC
* * ** * *
92415 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
92476 T-CC
65 TCCC
* * * * * * **
92479 TTTCAAAGTCCGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
92543 CCC
66 CCC
* * *
92546 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
92610 ACCC
65 TCCC
92614 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
92629 CAAGTCGGTG
Statistics
Matches: 170, Mismatches: 33, Indels: 19
0.77 0.15 0.09
Matches are distributed among these distances:
62 21 0.12
63 1 0.01
64 26 0.15
65 2 0.01
66 6 0.04
67 49 0.29
68 12 0.07
69 53 0.31
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:92587 original size:131 final size:131
Alignment explanation
Indices: 92353--92603 Score: 403
Period size: 131 Copynumber: 1.9 Consensus size: 131
92343 GACGAATTTT
*
92353 AAGTCCACGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* ** *
92418 TAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
92483 A
131 A
* * *
92484 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
92549 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
92604 TCTTTCACCC
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 109 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:92658 original size:33 final size:33
Alignment explanation
Indices: 92612--92781 Score: 245
Period size: 33 Copynumber: 5.2 Consensus size: 33
92602 CATCTTTCAC
92612 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
92644 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
92677 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
92710 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
92742 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
92776 CCTTCT
1 CCTTCT
92782 AAGCCCAATA
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
32 7 0.06
33 113 0.92
34 3 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:92839 original size:49 final size:48
Alignment explanation
Indices: 92781--93474 Score: 817
Period size: 49 Copynumber: 14.8 Consensus size: 48
92771 GCAACCCTTC
* * *
92781 TAAGCCCAATATAGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTT
* *
92830 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTAGCCCCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTT
* *
92879 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTT
* * *
92922 TAAGTCCAATATAGCTGGCATTGAATCAGCATATTGGCACCTTTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTT
*
92970 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T-TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTT
* * * * *
93014 -AAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCTTCTA
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTT
*
93062 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T-TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTT
* * *
93106 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTT
*
93154 TAAGTCCAATGTAGCTGTCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTT
*
93203 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T-TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTT
* * *
93247 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTT
*
93295 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTT
* *
93344 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTT
* *
93387 TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-C-TCTT
* * *
93439 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
93475 ACATCCTTTT
Statistics
Matches: 553, Mismatches: 60, Indels: 61
0.82 0.09 0.09
Matches are distributed among these distances:
43 183 0.33
44 3 0.01
45 2 0.00
46 12 0.02
47 1 0.00
48 43 0.08
49 274 0.50
50 1 0.00
52 34 0.06
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTT
Found at i:92951 original size:92 final size:92
Alignment explanation
Indices: 92827--93483 Score: 851
Period size: 92 Copynumber: 7.0 Consensus size: 92
92817 GCACCTTCAT
* * *
92827 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTAGCCCCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
*
92892 GCTGGCCTTGAATTAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
92919 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCATATTGGCACCTT-TTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
92983 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
93010 CTTCAAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCTTCTATAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
93075 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
93102 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
* *
93167 GCTGTCCTTGAATCAGCATATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
93198 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
* *
93257 TCGCTGGCCTTGAATCAGCATATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
93290 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
*
93355 TAGCTGGCCTTGAATTAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
93384 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAAT
* *
93449 GTAGCTGGCTTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
93480 CTTT
1 CTTT
93484 TTCTCATCTT
Statistics
Matches: 506, Mismatches: 42, Indels: 30
0.88 0.07 0.05
Matches are distributed among these distances:
91 85 0.17
92 293 0.58
93 1 0.00
94 3 0.01
95 47 0.09
96 6 0.01
97 1 0.00
98 70 0.14
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:93208 original size:141 final size:141
Alignment explanation
Indices: 92781--93474 Score: 890
Period size: 141 Copynumber: 4.9 Consensus size: 141
92771 GCAACCCTTC
* * * * *
92781 TAAGCCCAATATAGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATAGCT
* * * * *
92846 GGCCTTGAATCAGCATATTAGCCCCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCAC
60 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAT
92911 ATTGGCA----C--CTT
125 ATTGGCACCTTCTTCTT
* * * *
92922 TAAGTCCAATATAGCTGGCATTGAATCAGCATATTGGCACCTTTTCTTTAAGTCCAATGTAGCTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC---AAGTCCAATATAGCTG
* * * * *
92987 GCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCTAATATCGCTGGCCTTGAATCAACATA
61 GCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATA
*
93046 TTGGCACCTTCTTCTA
126 TTGGCACCTTCTTCTT
* *
93062 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
*
93127 GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGTCCTTGAATCAGCATATTGGC
66 GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGC
93192 ACCTTCTTCTT
131 ACCTTCTTCTT
* *
93203 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
*
93268 GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGT
66 GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGC
93333 ACCTTCTTCTT
131 ACCTTCTTCTT
* * *
93344 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTAGGTCCAATATAGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
* * *
93409 GAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATT
66 GAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATT
93474 G
128 G
93475 ACATCCTTTT
Statistics
Matches: 501, Mismatches: 36, Indels: 29
0.89 0.06 0.05
Matches are distributed among these distances:
134 32 0.06
135 36 0.07
136 1 0.00
137 2 0.00
138 6 0.01
139 1 0.00
140 82 0.16
141 298 0.59
142 2 0.00
143 2 0.00
144 39 0.08
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (141 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGC
ACCTTCTTCTT
Found at i:93463 original size:52 final size:55
Alignment explanation
Indices: 93384--93748 Score: 230
Period size: 52 Copynumber: 6.6 Consensus size: 55
93374 ACATTGGCAC
* * *
93384 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
93436 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
93491 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
*
93556 AA
54 AT
* * *
93558 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * *
93610 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
93663 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
93718 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCA
93749 ATGTATTGGT
Statistics
Matches: 246, Mismatches: 44, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 75 0.30
53 42 0.17
54 9 0.04
55 64 0.26
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.15
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:93519 original size:55 final size:54
Alignment explanation
Indices: 93392--93748 Score: 226
Period size: 55 Copynumber: 6.4 Consensus size: 54
93382 ACCTTTAGGT
* * * *
93392 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTTTC-CATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
93444 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAGC
* * * * *
93499 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAACTTTAA
1 CCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C---A-C-CTTTT-TC-TC---ATCTTTAA
*
93564 GT
53 GC
* * * *
93566 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTC-TCATCTTT-AAGC
* * * * * *
93619 CCAATGTTGTTGGCCTTGAATCAGCACATTGGCA--TTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
93671 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-C
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTT-AAGC
* *
93726 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCTTGAATCA
93749 ATGTATTGGT
Statistics
Matches: 240, Mismatches: 42, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 64 0.27
53 42 0.17
54 8 0.03
55 69 0.29
56 4 0.02
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 5 0.02
63 2 0.01
64 3 0.01
66 1 0.00
67 34 0.14
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
Found at i:93663 original size:53 final size:52
Alignment explanation
Indices: 93566--93748 Score: 152
Period size: 53 Copynumber: 3.4 Consensus size: 52
93556 AACTTTAAGT
* * * **
93566 CCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC-TCATCTTT-AAAC
* * * * * **
93619 CCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTCTCATCTTTAAAC
* * * * *
93671 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAAC
1 CCAATATCGCTGGCCGTGAATCAGCACATTGGCA---TTTTTCTCATCTTTAAAC
*
93726 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCGTGAATCA
93749 ATGTATTGGT
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
52 30 0.29
53 38 0.37
54 3 0.03
55 33 0.32
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.34
Consensus pattern (52 bp):
CCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTCTCATCTTTAAAC
Found at i:93731 original size:227 final size:228
Alignment explanation
Indices: 93402--93828 Score: 612
Period size: 227 Copynumber: 1.9 Consensus size: 228
93392 CCAATATAGC
* * * **
93402 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
93467 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
93531 CATCTTTATCACTTTTC-TCATCTTCAACTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
93595 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
93629 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
**
93692 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAATGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * *
93756 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAATGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
93821 AGTGGCAC
193 AGTGGCAC
93829 ATTGCAGTGA
Statistics
Matches: 176, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
226 7 0.04
227 119 0.68
228 50 0.28
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCAACTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:94273 original size:36 final size:34
Alignment explanation
Indices: 94186--94465 Score: 210
Period size: 31 Copynumber: 8.4 Consensus size: 34
94176 TGGGGATGAA
* *
94186 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
94215 TTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * *
94252 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
94286 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * *
94316 TTTCAAAGTCCACGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
94346 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
94383 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
94416 TTTTTAAGTCCAAAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
94451 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
94466 CAAGTCGGTG
Statistics
Matches: 205, Mismatches: 27, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
29 4 0.02
30 11 0.05
31 60 0.29
32 2 0.01
33 45 0.22
34 6 0.03
35 18 0.09
36 49 0.24
37 10 0.05
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:94424 original size:131 final size:131
Alignment explanation
Indices: 94190--94427 Score: 431
Period size: 131 Copynumber: 1.8 Consensus size: 131
94180 GATGAATTTT
*
94190 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
*
94255 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
94320 A
131 A
*
94321 AAGTCCACGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
94386 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCA
94428 AAACTTCGTG
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
131 102 1.00
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
A
Found at i:94495 original size:33 final size:33
Alignment explanation
Indices: 94447--94618 Score: 256
Period size: 33 Copynumber: 5.2 Consensus size: 33
94437 GGCATCTTTC
94447 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
94479 AACCTTCTCTAAAGCCCACAAAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
94512 AACCTTCCCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
** *
94545 ACCCCACTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
94578 ACCCTTCTCTAAAGCCCACGCAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
94611 ACCCTTCT
1 ACCCTTCT
94619 AAGCCCAAGA
Statistics
Matches: 126, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
32 5 0.04
33 121 0.96
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:94683 original size:49 final size:49
Alignment explanation
Indices: 94618--95073 Score: 474
Period size: 49 Copynumber: 9.7 Consensus size: 49
94608 GCAACCCTTC
* *
94618 TAAGCCCAAGATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
94667 TAAGTCCAATGTAGCTGGCCATGAATCAGCATATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
94711 -AAGTCTAATATCGCTGGCCCTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
94753 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
94802 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
94846 -AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
94894 TAAGTCCAATGTAGCTAGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
94943 TAAGTCCAATTTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
94986 TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * *
95038 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
95074 ACGTCCTTTT
Statistics
Matches: 339, Mismatches: 44, Indels: 45
0.79 0.10 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 137 0.40
44 1 0.00
45 1 0.00
46 11 0.03
47 1 0.00
48 2 0.01
49 149 0.44
50 1 0.00
52 34 0.10
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:94729 original size:43 final size:44
Alignment explanation
Indices: 94613--95028 Score: 435
Period size: 43 Copynumber: 9.1 Consensus size: 44
94603 CGGTGGCAAC
* *
94613 CCTTCTAAGCCCAAGATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
94657 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCATGAATCAGCATATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
94706 CCTTC-AAGTCTAATATCGCTGGCCCTGAATCAGCACATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
94749 CCTT-TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
94792 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
94841 CCTTC-AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
94884 CCTTCATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCATATTGGTA
1 CC-T--TC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
94933 CCTTCTTCTTTAAGTCCAATTTAGCTGGCCTTGAATTAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
94982 CCTT-TAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
95025 CCTT
1 CCTT
95029 TTCCATCTTT
Statistics
Matches: 314, Mismatches: 37, Indels: 42
0.80 0.09 0.11
Matches are distributed among these distances:
43 144 0.46
44 2 0.01
45 1 0.00
46 16 0.05
47 4 0.01
48 3 0.01
49 141 0.45
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:94809 original size:92 final size:89
Alignment explanation
Indices: 94664--95029 Score: 402
Period size: 92 Copynumber: 4.0 Consensus size: 89
94654 GCACCTTCTT
* * * *
94664 CTTTAAGTCCAATGTAGCTGGCCATGAATCAGCATATTGGCACCTTC---AAGTCTAATATCGCT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAGCT
*
94726 GGCCCTGAATCAGCACATTGGCAC
66 GGCCTTGAATCAGCACATTGGCAC
* * *
94750 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--CTTCTTTAAGTCCAATATA
94815 GCTGGCCTTGAATCAGCACATTGGCAC
63 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
94842 CTTCAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T--TCTTTAAGTCCAATATA
* * *
94907 GCTAGCCTTGAATCAGCATATTGGTACCTTC
63 GCTGGCCTTGAATCAGCACATTGG---C-AC
* * * *
94938 TTCTTTAAGTCCAATTTAGCTGGCCTTGAATTAGCACATTGGCA-C--CTTTAGGTCCAATATAG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAG
*
95000 CTGGCCTTGAATCAGCATATTGGCAC
64 CTGGCCTTGAATCAGCACATTGGCAC
95026 CTTT
1 CTTT
95030 TCCATCTTTA
Statistics
Matches: 242, Mismatches: 23, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
86 43 0.18
87 1 0.00
88 1 0.00
89 6 0.02
90 1 0.00
91 1 0.00
92 149 0.62
95 1 0.00
96 1 0.00
97 1 0.00
98 37 0.15
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (89 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAGCT
GGCCTTGAATCAGCACATTGGCAC
Found at i:95062 original size:52 final size:55
Alignment explanation
Indices: 94983--95347 Score: 196
Period size: 52 Copynumber: 6.6 Consensus size: 55
94973 ACATTGGCAC
* * *
94983 CTTTAGGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-ACC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACGACCTTTTTCTCAT
* * * *
95035 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACGTCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACGACCTTTTTCTCAT
* * * * * * *
95090 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C--GA-C-C-TTT-T--TC-TC
95155 AT
54 AT
* * *
95157 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGC-ACC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACGACCTTTTTC-TCAT
** * * * * *
95209 CTTTAAAACCCAATGTTGTTGGCTTTGAATCAGCACATTG--G-CATTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACGACCTTTTTCTCAT
* * * * * *
95262 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGAC-ATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACGA-CCTTTTTCTCAT
* * * *
95317 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCA
95348 ACGTATTAGT
Statistics
Matches: 240, Mismatches: 48, Indels: 47
0.72 0.14 0.14
Matches are distributed among these distances:
51 1 0.00
52 72 0.30
53 38 0.16
54 9 0.04
55 65 0.27
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 2 0.01
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 37 0.15
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACGACCTTTTTCTCAT
Found at i:95194 original size:67 final size:68
Alignment explanation
Indices: 95086--95212 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
95076 GTCCTTTTTC
* * *
95086 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
95150 TCT
66 TCT
* * * *
95153 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
95213 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:95330 original size:227 final size:228
Alignment explanation
Indices: 95001--95419 Score: 578
Period size: 227 Copynumber: 1.8 Consensus size: 228
94991 CCAATATAGC
* * * **
95001 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
*
95066 GCACATTGACGTCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATT-GG
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
** * * *
95130 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTGAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
95194 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
95228 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
95291 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * * *
95355 AGTCCTTTTATCACTCGTCATCCTCATCATCTTGAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 AGGCATTTTATCACTCGTCATCATCATCATCTTGAAGTCCAATATTGCAGGCCTTGAATCAGCAT
95420 CGTGGCACAT
Statistics
Matches: 166, Mismatches: 21, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
226 7 0.04
227 116 0.70
228 43 0.26
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
CATTTTATCACTCGTCATCATCATCATCTTGAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:95834 original size:31 final size:31
Alignment explanation
Indices: 95785--96039 Score: 192
Period size: 31 Copynumber: 7.8 Consensus size: 31
95775 TGGGGACGAA
* * *
95785 TTTT-AAGTCCACGACTCCGTCGCACCTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
95815 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C---TT-CC
* **
95851 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACC---TTCC
*
95885 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
* * * *
95915 TTTCAAAGTCCGCGACTCTGTGGCACCTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
95945 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C---TT-CC
* *
95982 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
1 TTTTAAAGTCCACAACTCCGTGGCACC-T-TCC
* *
96015 TTTTTAAGTCCACAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
96040 TCTTTCACCC
Statistics
Matches: 185, Mismatches: 25, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
30 15 0.08
31 58 0.31
32 2 0.01
33 43 0.23
34 7 0.04
35 10 0.05
36 45 0.24
37 5 0.03
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (31 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTCC
Found at i:95864 original size:36 final size:34
Alignment explanation
Indices: 95815--96064 Score: 203
Period size: 36 Copynumber: 7.4 Consensus size: 34
95805 CGCACCTTCT
95815 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * ** *
95851 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
95885 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
95915 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
95945 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
95982 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
96015 TTTTTAAGTCCACAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
96050 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
96065 CAAGTCGGTG
Statistics
Matches: 176, Mismatches: 27, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
30 11 0.06
31 40 0.23
32 1 0.01
33 44 0.25
34 6 0.03
35 16 0.09
36 53 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:95905 original size:69 final size:68
Alignment explanation
Indices: 95785--96064 Score: 263
Period size: 69 Copynumber: 4.2 Consensus size: 68
95775 TGGGGACGAA
* * * * *
95785 TTTT-AAGTCCACGACTCCGTCGCACCTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
95848 CCC
66 CCC
* * ** * *
95851 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
95912 T-CC
65 TCCC
* * * * * * **
95915 TTTCAAAGTCCGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
95979 CCC
66 CCC
* * *
95982 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
96046 ACCC
65 TCCC
96050 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
96065 CAAGTCGGTG
Statistics
Matches: 170, Mismatches: 33, Indels: 19
0.77 0.15 0.09
Matches are distributed among these distances:
62 21 0.12
63 1 0.01
64 26 0.15
65 2 0.01
66 6 0.04
67 49 0.29
68 12 0.07
69 53 0.31
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:96023 original size:131 final size:131
Alignment explanation
Indices: 95789--96039 Score: 403
Period size: 131 Copynumber: 1.9 Consensus size: 131
95779 GACGAATTTT
*
95789 AAGTCCACGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* ** *
95854 TAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
95919 A
131 A
* * *
95920 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
95985 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
96040 TCTTTCACCC
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 109 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:96094 original size:33 final size:33
Alignment explanation
Indices: 96048--96217 Score: 245
Period size: 33 Copynumber: 5.2 Consensus size: 33
96038 CATCTTTCAC
96048 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
96080 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
96113 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
96146 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
96178 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
96212 CCTTCT
1 CCTTCT
96218 AAGCCCAATA
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
32 7 0.06
33 113 0.92
34 3 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:96275 original size:49 final size:49
Alignment explanation
Indices: 96217--96503 Score: 262
Period size: 49 Copynumber: 5.8 Consensus size: 49
96207 GCAACCCTTC
* *
96217 TAAGCCCAATATAGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
96266 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTAGCCCCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
96315 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
96358 TAAGTCCAATATAGCTGGCATTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * * * *
96410 TAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TTC--ATCTT
* * * * *
96465 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
96504 TCTTTATCAC
Statistics
Matches: 194, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
43 38 0.20
45 1 0.01
49 78 0.40
50 1 0.01
52 36 0.19
53 3 0.02
54 4 0.02
55 33 0.17
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:96360 original size:43 final size:43
Alignment explanation
Indices: 96312--96401 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
96302 GCCCCTTCTT
* * *
96312 CTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCACATTGGCAC
*
96355 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCACATTGGCAC
96398 CTTT
1 CTTT
96402 TCCATCTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCATTGAATCAGCACATTGGCAC
Found at i:96387 original size:92 final size:96
Alignment explanation
Indices: 96263--96454 Score: 266
Period size: 95 Copynumber: 2.0 Consensus size: 96
96253 GCACCTTCAT
* * *
96263 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTAGC-CC-CTT-CTTCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCATATTAGCACCTCTTCCATCTTTAAGTCCAAT
* * *
96325 GTAGCTGGCCTTGAATTAGCACATTGGCA-C
66 GTAGCTAGCCTTGAATCAGCACATTGACATC
* * *
96355 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCATATTAGCACCTCTTCCATCTTTAAGTCCAAT
*
96420 GTAGCTAGCTTTGAATCAGCACATTGACATC
66 GTAGCTAGCCTTGAATCAGCACATTGACATC
96451 CTTT
1 CTTT
96455 TTCTTATCTT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
92 38 0.44
93 2 0.02
94 2 0.02
95 39 0.45
96 5 0.06
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (96 bp):
CTTTAAGTCCAATATAGCTGGCATTGAATCAGCATATTAGCACCTCTTCCATCTTTAAGTCCAAT
GTAGCTAGCCTTGAATCAGCACATTGACATC
Found at i:96434 original size:52 final size:53
Alignment explanation
Indices: 96355--96476 Score: 147
Period size: 52 Copynumber: 2.3 Consensus size: 53
96345 ACATTGGCAC
* * *
96355 CTTTAAGTCCAATATAGCTGGCATTGAATCAGCATATTGGCA-CCTTTTCCAT
1 CTTTAAGTCCAATATAGCTAGCATTGAATCAGCACATTGACATCCTTTTCCAT
* * * *
96407 CTTTAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTTAT
1 CTTTAAGTCCAATATAGCTAGCATTGAATCAGCACATTGACATCC-TTTTC-CAT
*
96462 CTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
96477 CGTTGGCCGT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
52 36 0.63
53 2 0.04
54 5 0.09
55 14 0.25
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTAGCATTGAATCAGCACATTGACATCCTTTTCCAT
Found at i:96568 original size:67 final size:67
Alignment explanation
Indices: 96456--96584 Score: 179
Period size: 67 Copynumber: 1.9 Consensus size: 67
96446 ACATCCTTTT
* * *
96456 TCTTATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCT
1 TCTTATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCT
96520 CA
66 CA
* * * *
96522 TCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCTT-ATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
96585 AAAACCCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 4 0.07
67 46 0.85
68 4 0.07
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (67 bp):
TCTTATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCT
CA
Found at i:96718 original size:227 final size:228
Alignment explanation
Indices: 96373--96791 Score: 553
Period size: 227 Copynumber: 1.8 Consensus size: 228
96363 CCAATATAGC
* * **
96373 TGGCATTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCTTTGAATCA
1 TGGCATTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCCGTGAATCA
* *
96438 GCACATTGACATCCTTTTTCTTATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTAGCCGTGAATCAACATATTGGT
** * *
96502 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
96566 TGGCACCTTCATCATCTTTAAAACCCAAAGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAAAGTTGT
* * *
96600 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCT-GACCGTGAA
1 TGGCATTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTAG-CCGTGAA
* * * *
96662 TCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CTCAATATTGTTAGCTGTGAATCAACGTAT
63 TCAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTAGCCGTGAATCAACATAT
* * * * *
96726 TGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCA
127 TGGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCA
96791 T
192 T
96792 CGTGGCACAT
Statistics
Matches: 164, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
226 8 0.05
227 113 0.69
228 43 0.26
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCATTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTAGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAAAGTTGT
Found at i:97206 original size:31 final size:31
Alignment explanation
Indices: 97157--97411 Score: 174
Period size: 31 Copynumber: 7.8 Consensus size: 31
97147 TGGGGACGAA
* * *
97157 TTTT-AAGTCCACGACTCCGTCGCACCTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
97187 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C---TT-CC
* **
97223 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACC---TTCC
*
97257 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
* * * *
97287 TTTCAAAGTCCGCGACTCTGTGGCACCTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
97317 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C---TT-CC
** *
97354 TTTTAAAACCCACAACTCCGTGGCACCTTGTTC
1 TTTTAAAGTCCACAACTCCGTGGCACC-T-TCC
* * *
97387 TTTTTAAGTCCATAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
97412 TCTTTGACCC
Statistics
Matches: 182, Mismatches: 28, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
30 15 0.08
31 58 0.32
32 2 0.01
33 41 0.23
34 7 0.04
35 10 0.05
36 44 0.24
37 5 0.03
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.33
Consensus pattern (31 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTCC
Found at i:97236 original size:36 final size:34
Alignment explanation
Indices: 97187--97436 Score: 185
Period size: 36 Copynumber: 7.4 Consensus size: 34
97177 CGCACCTTCT
97187 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * ** *
97223 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
97257 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
97287 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
97317 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* *
97354 TTTTAAAACCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
97387 TTTTTAAGTCCATAACTTCGTGGCATCTTTGACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
97422 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
97437 CAAGTCGGTG
Statistics
Matches: 172, Mismatches: 31, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
30 11 0.06
31 40 0.23
32 1 0.01
33 42 0.24
34 6 0.03
35 16 0.09
36 51 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:97277 original size:69 final size:68
Alignment explanation
Indices: 97157--97436 Score: 245
Period size: 69 Copynumber: 4.2 Consensus size: 68
97147 TGGGGACGAA
* * * * *
97157 TTTT-AAGTCCACGACTCCGTCGCACCTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
97220 CCC
66 CCC
* * ** * *
97223 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
97284 T-CC
65 TCCC
* * * * * * **
97287 TTTCAAAGTCCGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
97351 CCC
66 CCC
* * * * *
97354 TTTTAAAACCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCATAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
97418 ACCC
65 TCCC
97422 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
97437 CAAGTCGGTG
Statistics
Matches: 167, Mismatches: 36, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
62 21 0.13
63 1 0.01
64 26 0.16
65 2 0.01
66 6 0.04
67 48 0.29
68 12 0.07
69 51 0.31
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:97395 original size:131 final size:131
Alignment explanation
Indices: 97161--97398 Score: 386
Period size: 131 Copynumber: 1.8 Consensus size: 131
97151 GACGAATTTT
*
97161 AAGTCCACGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
** **
97226 TAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAACCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
97291 A
131 A
* * *
97292 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
97357 TAAAACCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCA
66 TAAAACCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCA
97399 TAACTTCGTG
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 97 1.00
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAACCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
A
Found at i:97466 original size:33 final size:33
Alignment explanation
Indices: 97420--97589 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
97410 CATCTTTGAC
97420 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
97452 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
97485 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
97518 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
97550 CCATTCCCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
97584 CCTTCT
1 CCTTCT
97590 AAGCCCAATA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
32 6 0.05
33 108 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:97653 original size:49 final size:49
Alignment explanation
Indices: 97589--98102 Score: 464
Period size: 49 Copynumber: 10.8 Consensus size: 49
97579 GCAACCCTTC
*
97589 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
97638 TAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
97682 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
97724 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
97773 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
97817 -AAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
97865 TAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
97914 TAAGTCCAATTTAGCTAGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
97957 TAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * * *
98009 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCT--TCTT
* * * * *
98064 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
98103 TCTTTATCAC
Statistics
Matches: 377, Mismatches: 60, Indels: 50
0.77 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 135 0.36
44 1 0.00
45 1 0.00
46 11 0.03
47 1 0.00
48 2 0.01
49 148 0.39
50 1 0.00
52 35 0.09
53 3 0.01
54 4 0.01
55 33 0.09
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:97778 original size:92 final size:89
Alignment explanation
Indices: 97589--98000 Score: 390
Period size: 92 Copynumber: 4.5 Consensus size: 89
97579 GCAACCCTTC
* *
97589 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
97654 GGCCTTGAATCAGA-ACATTGGCACCTTC--
60 GGCCTTGAATCA-ACACATTGGCACCTTCTT
* * *
97682 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
97746 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAACACATTGGCA-C--CTTCTT
* * * * * *
97773 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGTTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
97838 GAAT-AAGCATATTGGCACCTTCATCTT
66 GAATCAA-CACATTGGCACC-T--TCTT
* * * *
97865 TAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATTTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---C-AC--CTTTAAGTCCAATATAGCT
* * *
97930 AGCCTTGAATTAGCACATTGGCA-C--CTT
60 GGCCTTGAATCAACACATTGGCACCTTCTT
* *
97957 TAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
98001 TCCATCTTTA
Statistics
Matches: 272, Mismatches: 29, Indels: 43
0.79 0.08 0.12
Matches are distributed among these distances:
85 1 0.00
86 41 0.15
87 1 0.00
88 2 0.01
89 6 0.02
90 1 0.00
91 3 0.01
92 180 0.66
95 1 0.00
96 1 0.00
97 1 0.00
98 33 0.12
99 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (89 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAACACATTGGCACCTTCTT
Found at i:98000 original size:43 final size:43
Alignment explanation
Indices: 97584--98000 Score: 384
Period size: 43 Copynumber: 9.1 Consensus size: 43
97574 CGGTGGCAAC
*
97584 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
97628 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
97677 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
97720 CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
97763 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
97812 CCTTCAAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
97855 CCTTCATCTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTT
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---C-A
* * * *
97908 CTTCTTTAAGTCCAATTTAGCTAGCCTTGAATTAGCACATTGGCA
1 C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
97953 CCTTTAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
97996 CCTTT
1 CCTTT
98001 TCCATCTTTA
Statistics
Matches: 306, Mismatches: 45, Indels: 41
0.78 0.11 0.10
Matches are distributed among these distances:
43 150 0.49
45 3 0.01
46 1 0.00
47 2 0.01
48 1 0.00
49 145 0.47
50 3 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:98089 original size:55 final size:54
Alignment explanation
Indices: 97962--98318 Score: 217
Period size: 55 Copynumber: 6.4 Consensus size: 54
97952 ACCTTTAGGT
** * * *
97962 CCAATATAACTGGCCTTGAATCAGCATATTGGCACC-TTTTC-CATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
98014 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAGC
* * * *
98069 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAA
1 CCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C---A-C-CTTTT-TC-TC---ATCTTTAA
*
98134 GT
53 GC
* * * *
98136 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTC-TCATCTTT-AAGC
* * * * * * *
98189 CCAATGTTGTTGGCTTTGAATCAGCACATTGGCA--TTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
98241 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-C
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTT-AAGC
* *
98296 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCTTGAATCA
98319 ACGTATTAGT
Statistics
Matches: 239, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 63 0.26
53 41 0.17
54 8 0.03
55 69 0.29
56 4 0.02
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 5 0.02
63 2 0.01
64 3 0.01
66 1 0.00
67 35 0.15
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
Found at i:98165 original size:67 final size:68
Alignment explanation
Indices: 98057--98183 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
98047 ATCCTTTTTC
* * *
98057 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
98121 TCT
66 TCT
* * * *
98124 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
98184 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:98301 original size:227 final size:228
Alignment explanation
Indices: 97972--98390 Score: 596
Period size: 227 Copynumber: 1.8 Consensus size: 228
97962 CCAATATAAC
* * * **
97972 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
98037 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATT-GG
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
** * *
98101 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
98165 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
98199 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
98262 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * * *
98326 AGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 AGGCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
98391 CGTGGCACAT
Statistics
Matches: 168, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
226 7 0.04
227 117 0.70
228 44 0.26
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:98805 original size:31 final size:31
Alignment explanation
Indices: 98756--98981 Score: 163
Period size: 31 Copynumber: 6.9 Consensus size: 31
98746 TGGGGACGAA
* * * *
98756 TTTT-AAGTCCACGACTCCGTCGCACCTTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCC
98786 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-C---TT-CC
* * **
98822 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACC---TTCC
* *
98856 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCC
* * * *
98886 TTTCAAAG-TCAGCGACTCTGTGGCACCTT-C
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTCC
98916 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-C---TT-CC
98953 TTTTAAAGCCCACAACTCCGTGGCACCTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTT
98982 GTTCTTTTTA
Statistics
Matches: 160, Mismatches: 20, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
30 17 0.11
31 53 0.33
32 6 0.04
33 18 0.11
34 6 0.04
35 10 0.06
36 45 0.28
37 5 0.03
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (31 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTCC
Found at i:98835 original size:36 final size:34
Alignment explanation
Indices: 98786--99035 Score: 187
Period size: 36 Copynumber: 7.4 Consensus size: 34
98776 CGCACCTTCT
98786 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * ** *
98822 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
98856 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * *
98886 TTTCAAAG-TCAGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTTTTCC
98916 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
98953 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
98986 TTTTTAAGTCCATAACTTCGTGGCATCTTTGACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
99021 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
99036 CAAGTCGGTG
Statistics
Matches: 173, Mismatches: 28, Indels: 26
0.76 0.12 0.11
Matches are distributed among these distances:
30 13 0.08
31 35 0.20
32 3 0.02
33 43 0.25
34 6 0.03
35 16 0.09
36 52 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:98876 original size:69 final size:68
Alignment explanation
Indices: 98756--99035 Score: 247
Period size: 69 Copynumber: 4.2 Consensus size: 68
98746 TGGGGACGAA
* * * * *
98756 TTTT-AAGTCCACGACTCCGTCGCACCTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
98819 CCC
66 CCC
* * ** * *
98822 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
98883 T-CC
65 TCCC
* * * * * **
98886 TTTCAAAG-TCAGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
98949 TCCC
65 TCCC
* * * *
98953 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCATAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
99017 ACCC
65 TCCC
99021 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
99036 CAAGTCGGTG
Statistics
Matches: 168, Mismatches: 33, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
62 21 0.12
63 3 0.02
64 23 0.14
65 2 0.01
66 6 0.04
67 47 0.28
68 14 0.08
69 52 0.31
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:99008 original size:131 final size:131
Alignment explanation
Indices: 98767--99010 Score: 389
Period size: 131 Copynumber: 1.9 Consensus size: 131
98757 TTTAAGTCCA
* *
98767 CGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTC
1 CGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
** *
98832 CACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCA
66 CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCA
98897 G
131 G
* *
98898 CGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
1 CGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
* * * *
98963 CACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCATAACTTCGTGGCA
66 CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
99011 TCTTTGACCC
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 102 1.00
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (131 bp):
CGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCA
G
Found at i:99065 original size:33 final size:33
Alignment explanation
Indices: 99019--99188 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
99009 CATCTTTGAC
99019 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
99051 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
99084 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
99117 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
99149 CCATTCCCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
99183 CCTTCT
1 CCTTCT
99189 TAGCCCAATA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
32 6 0.05
33 108 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:99252 original size:49 final size:49
Alignment explanation
Indices: 99193--99701 Score: 463
Period size: 49 Copynumber: 10.7 Consensus size: 49
99183 CCTTCTTAGC
99193 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* * *
99242 CCAATGTAGCTGGCCTTGAATCAGAACATTGGCA-C--CTTC---AAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* *
99285 CTAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* *
99328 CCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* * *
99377 CTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* * * *
99420 CCAATATCGTTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* * *
99469 CCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* * * * *
99518 CCAATTTAGCTAGCCTTGAATTAGCACATTGGCA----C--CTTTAGGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
* *
99561 CCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGT
* * * * * *
99613 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCT--TCTTTAAGT
* * * *
99668 CCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCA
99702 TCTTTATCAC
Statistics
Matches: 373, Mismatches: 59, Indels: 50
0.77 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 135 0.36
44 1 0.00
45 1 0.00
46 11 0.03
47 1 0.00
48 2 0.01
49 144 0.39
50 1 0.00
52 35 0.09
53 3 0.01
54 4 0.01
55 33 0.09
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (49 bp):
CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
Found at i:99377 original size:92 final size:89
Alignment explanation
Indices: 99193--99599 Score: 389
Period size: 92 Copynumber: 4.4 Consensus size: 89
99183 CCTTCTTAGC
*
99193 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCT
99258 TGAATCAGA-ACATTGGCACCTTC---AAGT
60 TGAATCA-ACACATTGGCACCTTCTTTAAGT
* * *
99285 CTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTTGAATC
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATC
*
99350 AACATATTGGCACCTTCTTCTTTAAGT
66 AACACATTGGCA-C--CTTCTTTAAGT
* * * * * *
99377 CTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGTTGGCCTTGAAT-
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATC
*
99441 AAGCATATTGGCACCTTCATCTTTAAGT
66 AA-CACATTGGCACC-T--TCTTTAAGT
* * * * *
99469 CCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATTTAGCTAGCCT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGG---C-AC--CTTTAAGTCCAATATAGCTGGCCT
* * *
99534 TGAATTAGCACATTGGCA-C--CTTTAGGT
60 TGAATCAACACATTGGCACCTTCTTTAAGT
*
99561 CCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
99600 TCCATCTTTA
Statistics
Matches: 269, Mismatches: 28, Indels: 42
0.79 0.08 0.12
Matches are distributed among these distances:
85 1 0.00
86 41 0.15
87 1 0.00
88 2 0.01
89 6 0.02
90 1 0.00
91 3 0.01
92 177 0.66
95 1 0.00
96 1 0.00
97 1 0.00
98 33 0.12
99 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (89 bp):
CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATC
AACACATTGGCACCTTCTTTAAGT
Found at i:99599 original size:43 final size:43
Alignment explanation
Indices: 99193--99599 Score: 382
Period size: 43 Copynumber: 8.9 Consensus size: 43
99183 CCTTCTTAGC
99193 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGT
* * * *
99242 CCAATGTAGCTGGCCTTGAATCAGAACATTGGCACCTTCAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGT
* *
99285 CTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGT
* *
99328 CCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGT
* * * *
99377 CTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGT
* * *
99420 CCAATATCGTTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGT
* * *
99469 CCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGG---C-AC--CTTTAAGT
* * * * *
99518 CCAATTTAGCTAGCCTTGAATTAGCACATTGGCACCTTTAGGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGT
*
99561 CCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
99600 TCCATCTTTA
Statistics
Matches: 298, Mismatches: 44, Indels: 38
0.78 0.12 0.10
Matches are distributed among these distances:
43 150 0.50
45 3 0.01
46 1 0.00
47 2 0.01
49 141 0.47
52 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGT
Found at i:99688 original size:55 final size:54
Alignment explanation
Indices: 99561--99917 Score: 217
Period size: 55 Copynumber: 6.4 Consensus size: 54
99551 ACCTTTAGGT
** * * *
99561 CCAATATAACTGGCCTTGAATCAGCATATTGGCACC-TTTTC-CATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
99613 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAGC
* * * *
99668 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAA
1 CCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C---A-C-CTTTT-TC-TC---ATCTTTAA
*
99733 GT
53 GC
* * * *
99735 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTC-TCATCTTT-AAGC
* * * * * * *
99788 CCAATGTTGTTGGCTTTGAATCAGCACATTGGCA--TTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
99840 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-C
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTT-AAGC
* *
99895 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCTTGAATCA
99918 ACGTATTAGT
Statistics
Matches: 239, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 63 0.26
53 41 0.17
54 8 0.03
55 69 0.29
56 4 0.02
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 5 0.02
63 2 0.01
64 3 0.01
66 1 0.00
67 35 0.15
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
Found at i:99764 original size:67 final size:68
Alignment explanation
Indices: 99656--99782 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
99646 ATCCTTTTTC
* * *
99656 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
99720 TCT
66 TCT
* * * *
99723 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
99783 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:99900 original size:227 final size:228
Alignment explanation
Indices: 99571--99989 Score: 596
Period size: 227 Copynumber: 1.8 Consensus size: 228
99561 CCAATATAAC
* * * **
99571 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
99636 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATT-GG
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
** * *
99700 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
99764 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
99798 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
99861 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * * *
99925 AGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 AGGCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
99990 CGTGGCACAT
Statistics
Matches: 168, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
226 7 0.04
227 117 0.70
228 44 0.26
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:100404 original size:31 final size:31
Alignment explanation
Indices: 100355--100580 Score: 163
Period size: 31 Copynumber: 6.9 Consensus size: 31
100345 TGGGGACGAA
* * * *
100355 TTTT-AAGTCCACGACTCCGTCGCACCTTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCC
100385 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-C---TT-CC
* * **
100421 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACC---TTCC
* *
100455 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCC
* * * *
100485 TTTCAAAG-TCAGCGACTCTGTGGCACCTT-C
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTCC
100515 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-C---TT-CC
100552 TTTTAAAGCCCACAACTCCGTGGCACCTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTT
100581 GTTCTTTTTA
Statistics
Matches: 160, Mismatches: 20, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
30 17 0.11
31 53 0.33
32 6 0.04
33 18 0.11
34 6 0.04
35 10 0.06
36 45 0.28
37 5 0.03
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (31 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTCC
Found at i:100434 original size:36 final size:34
Alignment explanation
Indices: 100385--100634 Score: 187
Period size: 36 Copynumber: 7.4 Consensus size: 34
100375 CGCACCTTCT
100385 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * ** *
100421 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
100455 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * *
100485 TTTCAAAG-TCAGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTTTTCC
100515 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
100552 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
100585 TTTTTAAGTCCATAACTTCGTGGCATCTTTGACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
100620 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
100635 CAAGTCGGTG
Statistics
Matches: 173, Mismatches: 28, Indels: 26
0.76 0.12 0.11
Matches are distributed among these distances:
30 13 0.08
31 35 0.20
32 3 0.02
33 43 0.25
34 6 0.03
35 16 0.09
36 52 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:100475 original size:69 final size:68
Alignment explanation
Indices: 100355--100634 Score: 247
Period size: 69 Copynumber: 4.2 Consensus size: 68
100345 TGGGGACGAA
* * * * *
100355 TTTT-AAGTCCACGACTCCGTCGCACCTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
100418 CCC
66 CCC
* * ** * *
100421 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
100482 T-CC
65 TCCC
* * * * * **
100485 TTTCAAAG-TCAGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
100548 TCCC
65 TCCC
* * * *
100552 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCATAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
100616 ACCC
65 TCCC
100620 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
100635 CAAGTCGGTG
Statistics
Matches: 168, Mismatches: 33, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
62 21 0.12
63 3 0.02
64 23 0.14
65 2 0.01
66 6 0.04
67 47 0.28
68 14 0.08
69 52 0.31
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:100607 original size:131 final size:131
Alignment explanation
Indices: 100366--100609 Score: 389
Period size: 131 Copynumber: 1.9 Consensus size: 131
100356 TTTAAGTCCA
* *
100366 CGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTC
1 CGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
** *
100431 CACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCA
66 CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCA
100496 G
131 G
* *
100497 CGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
1 CGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
* * * *
100562 CACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCATAACTTCGTGGCA
66 CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
100610 TCTTTGACCC
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 102 1.00
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (131 bp):
CGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCC
CACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCA
G
Found at i:100664 original size:33 final size:33
Alignment explanation
Indices: 100618--100787 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
100608 CATCTTTGAC
100618 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
100650 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
100683 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
100716 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
100748 CCATTCCCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
100782 CCTTCT
1 CCTTCT
100788 AAGCCCAATA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
32 6 0.05
33 108 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:100851 original size:49 final size:49
Alignment explanation
Indices: 100787--101300 Score: 464
Period size: 49 Copynumber: 10.8 Consensus size: 49
100777 GCAACCCTTC
*
100787 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
100836 TAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
100880 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
100922 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
100971 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
101015 -AAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
101063 TAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
101112 TAAGTCCAATTTAGCTAGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
101155 TAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * * *
101207 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCT--TCTT
* * * * *
101262 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
101301 TCTTTATCAC
Statistics
Matches: 377, Mismatches: 60, Indels: 50
0.77 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 135 0.36
44 1 0.00
45 1 0.00
46 11 0.03
47 1 0.00
48 2 0.01
49 148 0.39
50 1 0.00
52 35 0.09
53 3 0.01
54 4 0.01
55 33 0.09
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:100976 original size:92 final size:89
Alignment explanation
Indices: 100787--101198 Score: 390
Period size: 92 Copynumber: 4.5 Consensus size: 89
100777 GCAACCCTTC
* *
100787 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
100852 GGCCTTGAATCAGA-ACATTGGCACCTTC--
60 GGCCTTGAATCA-ACACATTGGCACCTTCTT
* * *
100880 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
100944 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAACACATTGGCA-C--CTTCTT
* * * * * *
100971 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGTTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
101036 GAAT-AAGCATATTGGCACCTTCATCTT
66 GAATCAA-CACATTGGCACC-T--TCTT
* * * *
101063 TAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATTTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---C-AC--CTTTAAGTCCAATATAGCT
* * *
101128 AGCCTTGAATTAGCACATTGGCA-C--CTT
60 GGCCTTGAATCAACACATTGGCACCTTCTT
* *
101155 TAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
101199 TCCATCTTTA
Statistics
Matches: 272, Mismatches: 29, Indels: 43
0.79 0.08 0.12
Matches are distributed among these distances:
85 1 0.00
86 41 0.15
87 1 0.00
88 2 0.01
89 6 0.02
90 1 0.00
91 3 0.01
92 180 0.66
95 1 0.00
96 1 0.00
97 1 0.00
98 33 0.12
99 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (89 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAACACATTGGCACCTTCTT
Found at i:101198 original size:43 final size:43
Alignment explanation
Indices: 100782--101198 Score: 384
Period size: 43 Copynumber: 9.1 Consensus size: 43
100772 CGGTGGCAAC
*
100782 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
100826 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
100875 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
100918 CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
100961 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
101010 CCTTCAAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
101053 CCTTCATCTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCATATTGGTACCTT
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---C-A
* * * *
101106 CTTCTTTAAGTCCAATTTAGCTAGCCTTGAATTAGCACATTGGCA
1 C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
101151 CCTTTAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
101194 CCTTT
1 CCTTT
101199 TCCATCTTTA
Statistics
Matches: 306, Mismatches: 45, Indels: 41
0.78 0.11 0.10
Matches are distributed among these distances:
43 150 0.49
45 3 0.01
46 1 0.00
47 2 0.01
48 1 0.00
49 145 0.47
50 3 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:101287 original size:55 final size:54
Alignment explanation
Indices: 101160--101516 Score: 208
Period size: 55 Copynumber: 6.4 Consensus size: 54
101150 ACCTTTAGGT
** * * *
101160 CCAATATAACTGGCCTTGAATCAGCATATTGGCACC-TTTTC-CATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
101212 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAGC
* * * *
101267 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAA
1 CCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C---A-C-CTTTT-TC-TC---ATCTTTAA
*
101332 GT
53 GC
* * * *
101334 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTC-TCATCTTT-AAGC
* * * * * * *
101387 CCAATGTTGTTGGCTTTGAATCAGCACATTGGCA--TTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * * *
101439 CTAATGTCGCTGACCGTGAATCAGAACATTGACATCCTTTTTCTCATCTTTGAA-C
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTT-AAGC
* *
101494 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCTTGAATCA
101517 ACGTATTAGT
Statistics
Matches: 238, Mismatches: 44, Indels: 43
0.73 0.14 0.13
Matches are distributed among these distances:
52 62 0.26
53 41 0.17
54 8 0.03
55 69 0.29
56 4 0.02
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 5 0.02
63 2 0.01
64 3 0.01
66 1 0.00
67 35 0.15
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (54 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
Found at i:101363 original size:67 final size:68
Alignment explanation
Indices: 101255--101381 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
101245 ATCCTTTTTC
* * *
101255 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
101319 TCT
66 TCT
* * * *
101322 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
101382 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:101499 original size:227 final size:228
Alignment explanation
Indices: 101170--101588 Score: 587
Period size: 227 Copynumber: 1.8 Consensus size: 228
101160 CCAATATAAC
* * * **
101170 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
*
101235 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATT-GG
66 GAACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
** * *
101299 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
101363 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
101397 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
101460 CAGAACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGAACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * * *
101524 AGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 AGGCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
101589 CGTGGCACAT
Statistics
Matches: 167, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
226 7 0.04
227 116 0.69
228 44 0.26
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GAACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:102003 original size:31 final size:31
Alignment explanation
Indices: 101954--102208 Score: 183
Period size: 31 Copynumber: 7.8 Consensus size: 31
101944 TGGGGACGAA
* * *
101954 TTTT-AAGTCCACGACTCCGTCGCACCTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
101984 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C---TT-CC
* **
102020 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACC---TTCC
*
102054 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
* * * *
102084 TTTCAAAGTCCGCGACTCTGTGGCACCTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
102114 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C---TT-CC
* *
102151 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
1 TTTTAAAGTCCACAACTCCGTGGCACC-T-TCC
* * *
102184 TTTTTAAGTCCATAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
102209 TCTTTGACCC
Statistics
Matches: 184, Mismatches: 26, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
30 15 0.08
31 58 0.32
32 2 0.01
33 42 0.23
34 7 0.04
35 10 0.05
36 45 0.24
37 5 0.03
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.33
Consensus pattern (31 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTCC
Found at i:102033 original size:36 final size:34
Alignment explanation
Indices: 101984--102233 Score: 194
Period size: 36 Copynumber: 7.4 Consensus size: 34
101974 CGCACCTTCT
101984 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * ** *
102020 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
102054 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
102084 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
102114 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
102151 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * * **
102184 TTTTTAAGTCCATAACTTCGTGGCATCTTTGACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
102219 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
102234 CAAGTCGGTG
Statistics
Matches: 174, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
30 11 0.06
31 40 0.23
32 1 0.01
33 43 0.25
34 6 0.03
35 16 0.09
36 52 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:102074 original size:69 final size:68
Alignment explanation
Indices: 101954--102233 Score: 254
Period size: 69 Copynumber: 4.2 Consensus size: 68
101944 TGGGGACGAA
* * * * *
101954 TTTT-AAGTCCACGACTCCGTCGCACCTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
102017 CCC
66 CCC
* * ** * *
102020 TTTTAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
102081 T-CC
65 TCCC
* * * * * * **
102084 TTTCAAAGTCCGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
102148 CCC
66 CCC
* * * *
102151 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCATAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
102215 ACCC
65 TCCC
102219 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
102234 CAAGTCGGTG
Statistics
Matches: 169, Mismatches: 34, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
62 21 0.12
63 1 0.01
64 26 0.15
65 2 0.01
66 6 0.04
67 49 0.29
68 12 0.07
69 52 0.31
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:102192 original size:131 final size:131
Alignment explanation
Indices: 101958--102195 Score: 395
Period size: 131 Copynumber: 1.8 Consensus size: 131
101948 GACGAATTTT
*
101958 AAGTCCACGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* **
102023 TAAAGTCCACAACCCCGTGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
102088 A
131 A
* * *
102089 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
102154 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCA
102196 TAACTTCGTG
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 98 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.32
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
A
Found at i:102263 original size:33 final size:33
Alignment explanation
Indices: 102217--102386 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
102207 CATCTTTGAC
102217 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
102249 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
102282 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
102315 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
102347 CCATTCCCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
102381 CCTTCT
1 CCTTCT
102387 AAGCCCAATA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
32 6 0.05
33 108 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:102450 original size:49 final size:49
Alignment explanation
Indices: 102386--102899 Score: 455
Period size: 49 Copynumber: 10.8 Consensus size: 49
102376 GCAACCCTTC
*
102386 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
102435 TAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
102479 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
102521 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
102570 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
102614 -AAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
102662 TAAGTCCAATGTAGTTGGTCTTGAATCAGCATATTGGTACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
102711 TAAGTCCAATTTAGCTAGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
102754 TAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * * *
102806 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCT--TCTT
* * * * *
102861 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
102900 TCTTTATCAC
Statistics
Matches: 375, Mismatches: 62, Indels: 50
0.77 0.13 0.10
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 135 0.36
44 1 0.00
45 1 0.00
46 11 0.03
47 1 0.00
48 2 0.01
49 146 0.39
50 1 0.00
52 35 0.09
53 3 0.01
54 4 0.01
55 33 0.09
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:102575 original size:92 final size:89
Alignment explanation
Indices: 102386--102797 Score: 381
Period size: 92 Copynumber: 4.5 Consensus size: 89
102376 GCAACCCTTC
* *
102386 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
102451 GGCCTTGAATCAGA-ACATTGGCACCTTC--
60 GGCCTTGAATCA-ACACATTGGCACCTTCTT
* * *
102479 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
102543 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAACACATTGGCA-C--CTTCTT
* * * * * *
102570 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGTTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
102635 GAAT-AAGCATATTGGCACCTTCATCTT
66 GAATCAA-CACATTGGCACC-T--TCTT
* * * * *
102662 TAAGTCCAATGTAGTTGGTCTTGAATCAGCATATTGGTACCTTCTTCTTTAAGTCCAATTTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---C-AC--CTTTAAGTCCAATATAGCT
* * *
102727 AGCCTTGAATTAGCACATTGGCA-C--CTT
60 GGCCTTGAATCAACACATTGGCACCTTCTT
* *
102754 TAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
102798 TCCATCTTTA
Statistics
Matches: 270, Mismatches: 31, Indels: 43
0.78 0.09 0.12
Matches are distributed among these distances:
85 1 0.00
86 41 0.15
87 1 0.00
88 2 0.01
89 6 0.02
90 1 0.00
91 3 0.01
92 178 0.66
95 1 0.00
96 1 0.00
97 1 0.00
98 33 0.12
99 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (89 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAACACATTGGCACCTTCTT
Found at i:102797 original size:43 final size:43
Alignment explanation
Indices: 102381--102797 Score: 375
Period size: 43 Copynumber: 9.1 Consensus size: 43
102371 CGGTGGCAAC
*
102381 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
102425 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
102474 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
102517 CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
102560 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
102609 CCTTCAAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
102652 CCTTCATCTTTAAGTCCAATGTAGTTGGTCTTGAATCAGCATATTGGTACCTT
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---C-A
* * * *
102705 CTTCTTTAAGTCCAATTTAGCTAGCCTTGAATTAGCACATTGGCA
1 C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
102750 CCTTTAGGTCCAATATAACTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
102793 CCTTT
1 CCTTT
102798 TCCATCTTTA
Statistics
Matches: 304, Mismatches: 47, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
43 150 0.49
45 3 0.01
46 1 0.00
47 2 0.01
48 1 0.00
49 143 0.47
50 3 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:102886 original size:55 final size:54
Alignment explanation
Indices: 102759--103115 Score: 217
Period size: 55 Copynumber: 6.4 Consensus size: 54
102749 ACCTTTAGGT
** * * *
102759 CCAATATAACTGGCCTTGAATCAGCATATTGGCACC-TTTTC-CATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
102811 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTTAAGC
* * * *
102866 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAA
1 CCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C---A-C-CTTTT-TC-TC---ATCTTTAA
*
102931 GT
53 GC
* * * *
102933 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCATCTTTAAAAC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTC-TCATCTTT-AAGC
* * * * * * *
102986 CCAATGTTGTTGGCTTTGAATCAGCACATTGGCA--TTTTTCTCATCTTCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
* * * *
103038 CTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-C
1 CCAATATCGCTGGCCTTGAATCAGCACATTGACA-CCTTTTTCTCATCTTT-AAGC
* *
103093 CCAATATCGTTGGCCGTGAATCA
1 CCAATATCGCTGGCCTTGAATCA
103116 ACGTATTAGT
Statistics
Matches: 239, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 63 0.26
53 41 0.17
54 8 0.03
55 69 0.29
56 4 0.02
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 5 0.02
63 2 0.01
64 3 0.01
66 1 0.00
67 35 0.15
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTTTTCTCATCTTTAAGC
Found at i:102962 original size:67 final size:68
Alignment explanation
Indices: 102854--102980 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
102844 ATCCTTTTTC
* * *
102854 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
102918 TCT
66 TCT
* * * *
102921 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
102981 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:103098 original size:227 final size:228
Alignment explanation
Indices: 102769--103187 Score: 596
Period size: 227 Copynumber: 1.8 Consensus size: 228
102759 CCAATATAAC
* * * **
102769 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
102834 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATT-GG
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
** * *
102898 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAT
102962 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
102996 TGGCTTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
103059 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * * *
103123 AGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 AGGCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
103188 CGTGGCACAT
Statistics
Matches: 168, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
226 7 0.04
227 117 0.70
228 44 0.26
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTAGG
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:103632 original size:36 final size:34
Alignment explanation
Indices: 103553--103832 Score: 210
Period size: 31 Copynumber: 8.4 Consensus size: 34
103543 TGGGGACGAA
* *
103553 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
103582 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * *
103619 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
103653 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
103683 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
103713 TTTTGAAAGCCCACAACTCCATGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
103750 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
103783 TTTTTAAGTCCACAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
103818 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
103833 CAAGTCGGTG
Statistics
Matches: 205, Mismatches: 27, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
29 4 0.02
30 11 0.05
31 58 0.28
32 2 0.01
33 46 0.22
34 6 0.03
35 18 0.09
36 50 0.24
37 10 0.05
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:103791 original size:131 final size:131
Alignment explanation
Indices: 103557--103807 Score: 421
Period size: 131 Copynumber: 1.9 Consensus size: 131
103547 GACGAATTTT
*
103557 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTT
* *
103622 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
103687 A
131 A
* * *
103688 AAGTCCGCGACTCTGTGGCACCTTCTTTTGAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTT
* * *
103753 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
103808 TCTTTCACCC
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
131 111 1.00
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.30
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:103862 original size:33 final size:33
Alignment explanation
Indices: 103816--103985 Score: 245
Period size: 33 Copynumber: 5.2 Consensus size: 33
103806 CATCTTTCAC
103816 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
103848 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
103881 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
103914 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
103946 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
103980 CCTTCT
1 CCTTCT
103986 AAGCCCAATA
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
32 7 0.06
33 113 0.92
34 3 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:104043 original size:49 final size:50
Alignment explanation
Indices: 103985--104233 Score: 243
Period size: 49 Copynumber: 4.9 Consensus size: 50
103975 GCAACCCTTC
* *
103985 TAAGCCCAATATAGCTGGCCTTGAATAAGCATATTGGCACC-TTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATAAGCATATTGGCACCTTTCATCTT
* *
104034 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC-TTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATAAGCATATTGGCACCTTTCATCTT
* *
104083 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATAAGCATATTGGCACC-TTT-CATCTT
* * * * * *
104135 TAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATAAGCATATTGGCA-CC--TTTC--ATCTT
* * * * * *
104190 TAAGCCCAATATCGTTGGCCGTGAATCAA-CATATTGGCATCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAAT-AAGCATATTGGCACCTTT
104234 ATCACTTTTC
Statistics
Matches: 168, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
49 84 0.50
51 2 0.01
52 42 0.25
53 3 0.02
54 5 0.03
55 31 0.18
56 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
TAAGTCCAATGTAGCTGGCCTTGAATAAGCATATTGGCACCTTTCATCTT
Found at i:104159 original size:52 final size:49
Alignment explanation
Indices: 103985--104170 Score: 255
Period size: 49 Copynumber: 3.7 Consensus size: 49
103975 GCAACCCTTC
* * * *
103985 TAAGCCCAATATAGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
104034 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
104083 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* * *
104135 TAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
104171 ACATCCTTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
49 84 0.68
51 2 0.02
52 37 0.30
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:104164 original size:101 final size:99
Alignment explanation
Indices: 103985--104228 Score: 276
Period size: 101 Copynumber: 2.4 Consensus size: 99
103975 GCAACCCTTC
*
103985 TAAGCCCAATATAGCTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGCCCAATATAGCTGGCCTTGAATAAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* * *
104050 GGCCTTGAATCAGCATATTGGCA-CCTTCTTCTT
66 AGCCTTGAATCAGCACATTGACATCCTTCTTCTT
* * * *
104083 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 TAAGCCCAATATAGCTGGCCTTGAATAAGCACATTGGCACC--TT-CATCTTTAAGTCCAATGTA
*
104148 GCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTTATCTT
63 GCTAGCCTTGAATCAGCACATTGACATCC---TTC-T-TCTT
* * * *
104190 TAAGCCCAATATCGTTGGCCGTGAATCAA-CATATTGGCA
1 TAAGCCCAATATAGCTGGCCTTGAAT-AAGCACATTGGCA
104229 TCTTTATCAC
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
98 37 0.31
100 2 0.02
101 40 0.33
102 2 0.02
105 3 0.03
106 1 0.01
107 34 0.28
108 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (99 bp):
TAAGCCCAATATAGCTGGCCTTGAATAAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
AGCCTTGAATCAGCACATTGACATCCTTCTTCTT
Found at i:104215 original size:55 final size:55
Alignment explanation
Indices: 104156--104444 Score: 189
Period size: 55 Copynumber: 5.1 Consensus size: 55
104146 TAGCTAGCTT
*
104156 TGAATCAGCACATTGACATCCTTTTTCTTATCTTTAAGCCCAATATCGTTGGCCG
1 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
* * * * *
104211 TGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATTGCTGGC
1 TGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TCATCTTTAAGCCCAATATCGTTGGC
*
104276 CT
54 CG
* * * * * *
104278 TGAATCAGCATATTGGCA-CC---TTCATCATCTTTAAAACCCAATGTTGTTGGCCT
1 TGAATCAGCACATTGACATCCTTTTTC-TCATCTTT-AAGCCCAATATCGTTGGCCG
* * * * * * *
104331 TGAATCAGCACATTGGCA---TTTTTCTCATCTTCAAGTCTAATGTCGCTGACCG
1 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
* *
104383 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CTCAATATCGTTAGCCG
1 TGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCG
104438 TGAATCA
1 TGAATCA
104445 ACGTATTGGT
Statistics
Matches: 182, Mismatches: 32, Indels: 40
0.72 0.13 0.16
Matches are distributed among these distances:
52 40 0.22
53 40 0.22
54 4 0.02
55 42 0.23
56 3 0.02
57 1 0.01
58 1 0.01
59 1 0.01
60 1 0.01
61 4 0.02
62 1 0.01
63 3 0.02
64 2 0.01
66 3 0.02
67 36 0.20
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (55 bp):
TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
Found at i:104293 original size:67 final size:67
Alignment explanation
Indices: 104181--104309 Score: 179
Period size: 67 Copynumber: 1.9 Consensus size: 67
104171 ACATCCTTTT
* * *
104181 TCTTATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCT
1 TCTTATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCT
104245 CA
66 CA
* * * *
104247 TCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCTT-ATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
104310 AAAACCCAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 4 0.07
67 46 0.85
68 4 0.07
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (67 bp):
TCTTATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCT
CA
Found at i:104429 original size:227 final size:224
Alignment explanation
Indices: 104025--104523 Score: 643
Period size: 227 Copynumber: 2.2 Consensus size: 224
104015 ATATTGGCAC
* **
104025 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCC
1 CTTCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAACCC
* * *
104090 AATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCT
66 AATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCC
* * *
104155 TTGAATCAGCACATTGACATCCTTTTTCTTATCTTTAAGCCCAATATCGTTGGCCGTGAATCAAC
131 GTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTAGCCGTGAATCAAC
**
104220 ATATTGG-CATCTTTATCACTTTTC-TCAT
196 ATATTGGTCAT-TTTATCACTCGTCATCAT
*
104248 CTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTTAAA
1 CTTCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACCTTC-T--TCTTT-AA
* * * *
104313 ACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCG
62 ACCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAG
*
104376 CT-GACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CTCAATATCGTTAGCCGT
125 CTAG-CCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTAGCCGT
* * *
104439 GAATCAACGTATTGGTCCTTTTATCACTCGTCATCCT
188 GAATCAACATATTGGTCATTTTATCACTCGTCATCAT
* * * * *
104476 CATCATCTTTAAGTCCAGTGTTGCAGGCCTTG-ATCTGCATAGTGGCAC
1 CTTCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCAC
104524 ATTGCAATGA
Statistics
Matches: 240, Mismatches: 26, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
223 51 0.21
224 1 0.00
226 13 0.05
227 140 0.58
228 35 0.15
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (224 bp):
CTTCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAACCC
AATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCC
GTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTAGCCGTGAATCAAC
ATATTGGTCATTTTATCACTCGTCATCAT
Found at i:104927 original size:36 final size:34
Alignment explanation
Indices: 104881--105109 Score: 208
Period size: 33 Copynumber: 6.9 Consensus size: 34
104871 TGGGGACGAA
*
104881 TTTT-AAGTCCACGACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-CTTTTT-CC
* * *
104916 TTTTAAAGTCCACAACCCCGTGGCGCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
*
104950 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
* * * *
104980 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
*
105010 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTTTT-CC
* *
105047 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
* * *
105080 TTTTTAAGTCCACAACTTCGTGGCATCTTT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTT
105110 GACCCTTTCT
Statistics
Matches: 164, Mismatches: 21, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
30 11 0.07
31 40 0.24
32 1 0.01
33 45 0.27
34 6 0.04
35 16 0.10
36 40 0.24
37 5 0.03
ACGTcount: A:0.18, C:0.34, G:0.15, T:0.33
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
Found at i:104996 original size:31 final size:31
Alignment explanation
Indices: 104885--105075 Score: 141
Period size: 31 Copynumber: 5.8 Consensus size: 31
104875 GACGAATTTT
*
104885 AAGTCCACGACTCCGTGGCACTCTTTTTCCCTTTTA
1 AAGTCCACGACTCCGTGGCAC-C---TT-CCTTTCA
* * * *
104921 AAGTCCACAACCCCGTGGCGCCTTGTTCCTTT-T
1 AAGTCCACGACTCCGTGGCACC---TTCCTTTCA
104954 AAGTCCACGACTCCGTGGCACCTTCCTTTCA
1 AAGTCCACGACTCCGTGGCACCTTCCTTTCA
* * *
104985 AAGTCCGCGACTCTGTGGCACCTTCTTTTCA
1 AAGTCCACGACTCCGTGGCACCTTCCTTTCA
* * *
105016 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTA
1 AAGTCCACGACTCCGTGGCAC-C---TT-CCTTTCA
* *
105052 AAGCCCACAACTCCGTGGCACCTT
1 AAGTCCACGACTCCGTGGCACCTT
105076 GTTCTTTTTA
Statistics
Matches: 131, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
30 7 0.05
31 45 0.34
32 3 0.02
33 19 0.15
34 5 0.04
35 8 0.06
36 44 0.34
ACGTcount: A:0.18, C:0.36, G:0.16, T:0.30
Consensus pattern (31 bp):
AAGTCCACGACTCCGTGGCACCTTCCTTTCA
Found at i:105104 original size:69 final size:69
Alignment explanation
Indices: 104881--105129 Score: 273
Period size: 69 Copynumber: 3.7 Consensus size: 69
104871 TGGGGACGAA
* * * *
104881 TTTTAAGTCCACGACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCGCCTTG
1 TTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTG
*
104946 TTCC
66 TTCT
* * * * * *
104950 TTTTAAGTCCACGACTCCGTGGCAC-C---TT-CCTTTCAAAGTCCGCGACTCTGTGGCACC---
1 TTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTG
105007 TTCT
66 TTCT
* *
105011 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTT
1 TTT-TAAGTCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTT
105076 GTTCT
65 GTTCT
* **
105081 TTTTAAGTCCACAACTTCGTGGCA-TCTTTGACCCTTTCTAAAGCCCACA
1 TTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCCTTT-TAAAGCCCACA
105130 CAAGTCGGTG
Statistics
Matches: 150, Mismatches: 20, Indels: 20
0.79 0.11 0.11
Matches are distributed among these distances:
61 6 0.04
62 19 0.13
63 1 0.01
64 23 0.15
65 2 0.01
66 2 0.01
67 24 0.16
68 12 0.08
69 54 0.36
70 7 0.05
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (69 bp):
TTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTG
TTCT
Done.