Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1652
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 199341
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
File 3 of 4
Found at i:105276 original size:33 final size:33
Alignment explanation
Indices: 105117--105282 Score: 226
Period size: 33 Copynumber: 5.0 Consensus size: 33
105107 TTTGACCCTT
* *
105117 TCTAAAGCCCACACAAGTCGGTGGCAAACATTC
1 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
*
105150 TCTAAAGCCCACACAAGTCGGTGGCAAACC-TTC
1 TCTAAAGCCCACACAAGTTGGTGGC-AACCATTC
* * ***
105183 CCTAAAGCCCACACAAGTTAGTGGCAACCCCAC
1 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
105216 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
1 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
* *
105249 TCTAAAGCCCACGCAAGTTGGTGGCAACCCTTC
1 TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
105282 T
1 T
105283 AAGCCCAATA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.03
33 111 0.94
34 3 0.03
ACGTcount: A:0.30, C:0.33, G:0.18, T:0.19
Consensus pattern (33 bp):
TCTAAAGCCCACACAAGTTGGTGGCAACCATTC
Found at i:105346 original size:49 final size:48
Alignment explanation
Indices: 105282--105829 Score: 570
Period size: 49 Copynumber: 11.8 Consensus size: 48
105272 GCAACCCTTC
*
105282 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTT
* *
105331 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTT
* *
105375 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA---C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTT
* *
105417 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTT
* * *
105466 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTT
** *
105510 -AAGTGAAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTT
* * *
105558 TATGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTT
* * *
105602 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTT
* *
105650 TAAGTCCAATGTAGCTGGCCTTGAATCAGGATATTGGCACCATCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTT
* * *
105699 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA---C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTT
*
105742 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC---T-CTTCTT
* * * * *
105794 TAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
105830 ACATCCTTTT
Statistics
Matches: 419, Mismatches: 50, Indels: 57
0.80 0.10 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 173 0.41
44 2 0.00
45 1 0.00
46 19 0.05
47 1 0.00
48 3 0.01
49 183 0.44
50 1 0.00
52 34 0.08
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTT
Found at i:105393 original size:43 final size:43
Alignment explanation
Indices: 105277--105784 Score: 512
Period size: 43 Copynumber: 11.1 Consensus size: 43
105267 TGGTGGCAAC
*
105277 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTC-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
105321 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
105370 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
105413 CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
105456 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
** *
105505 CCTTCAAGTGAAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
105548 CCTTCTTCTTTATGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
105597 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
105640 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGGATATTGGCA
1 CC-T--TC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
105689 CCATCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
105738 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
105781 CCTT
1 CCTT
105785 TTCCATCTTT
Statistics
Matches: 393, Mismatches: 45, Indels: 52
0.80 0.09 0.11
Matches are distributed among these distances:
43 179 0.46
44 3 0.01
45 1 0.00
46 24 0.06
47 4 0.01
48 4 0.01
49 175 0.45
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (43 bp):
CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:105471 original size:92 final size:92
Alignment explanation
Indices: 105282--105785 Score: 582
Period size: 92 Copynumber: 5.5 Consensus size: 92
105272 GCAACCCTTC
* *
105282 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
*
105347 GGCCTTGAATCAGCACATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
105375 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
105439 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * ** *
105466 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTGAAATATCGCTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
105531 GAATCAGCATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * * *
105558 TATGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
105623 GAATCAGCATATTGGCACCTTCATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * *
105650 TAAGTCCAATGTAGCTGGCCTTGAATCAGGATATTGGCACCATCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---CA-C--CTTTAAGTCCAATATAGCT
* *
105715 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
105742 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
105786 TCCATCTTTA
Statistics
Matches: 367, Mismatches: 32, Indels: 31
0.85 0.07 0.07
Matches are distributed among these distances:
86 42 0.11
87 1 0.00
88 2 0.01
89 6 0.02
92 276 0.75
94 1 0.00
95 2 0.01
96 1 0.00
98 36 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:105818 original size:52 final size:55
Alignment explanation
Indices: 105739--106076 Score: 185
Period size: 52 Copynumber: 6.1 Consensus size: 55
105729 ACATTGGCAC
* * *
105739 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
105791 CTTTAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * *
105846 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
105911 AT
54 AT
* * * * *
105913 CTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * * *
105965 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
106018 CTTCAAGTCTAATGTCGCT-GATCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTAG-CCTTGAATCAGCACATTGACATCCTTTTTCTCAT
106073 CTTT
1 CTTT
106077 GAACTCAATA
Statistics
Matches: 223, Mismatches: 40, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
51 1 0.00
52 74 0.33
53 41 0.18
54 9 0.04
55 44 0.20
56 1 0.00
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.16
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:105950 original size:67 final size:68
Alignment explanation
Indices: 105842--105968 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
105832 ATCCTTTTTC
* * *
105842 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
105906 TCT
66 TCT
* * * * *
105909 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
105969 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:106088 original size:227 final size:228
Alignment explanation
Indices: 105757--106183 Score: 598
Period size: 227 Copynumber: 1.9 Consensus size: 228
105747 CCAATATAGC
* * *
105757 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCTGTGAATCA
105822 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * *
105886 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAAT-TAGCATA
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCT-GCATA
*
105949 TTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
194 GTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
105984 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCT-GATCGTGAA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTAGCT-GTGAA
* *
106046 TCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CTCAATATCGTTGGCCGTGAATCAACGTAT
63 TCAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATAT
* * * *
106110 TGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCA
127 TGGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCTGCA
106175 TAGTGGCAC
192 TAGTGGCAC
106184 ATTGTAATGA
Statistics
Matches: 176, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
226 9 0.05
227 117 0.66
228 49 0.28
229 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCTGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCTGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:106590 original size:31 final size:31
Alignment explanation
Indices: 106541--106795 Score: 183
Period size: 31 Copynumber: 7.8 Consensus size: 31
106531 TGGGGACGAA
* * *
106541 TTTT-AAGTCCACGACTCCGTCGCACCTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
106571 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C---TT-CC
* * **
106607 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACC---TTCC
*
106641 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
* * * *
106671 TTTCAAAGTCCGCGACTCTGTGGCACCTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCC
*
106701 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C---TT-CC
* *
106738 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
1 TTTTAAAGTCCACAACTCCGTGGCACC-T-TCC
* *
106771 TTTTTAAGTCCACAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
106796 TCTTTGACCC
Statistics
Matches: 183, Mismatches: 27, Indels: 27
0.77 0.11 0.11
Matches are distributed among these distances:
30 15 0.08
31 58 0.32
32 2 0.01
33 42 0.23
34 7 0.04
35 10 0.05
36 44 0.24
37 5 0.03
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (31 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTCC
Found at i:106620 original size:36 final size:34
Alignment explanation
Indices: 106571--106820 Score: 194
Period size: 36 Copynumber: 7.4 Consensus size: 34
106561 CGCACCTTCT
106571 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * * ** *
106607 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
106641 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
106671 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
106701 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
106738 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
106771 TTTTTAAGTCCACAACTTCGTGGCATCTTTGACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
106806 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
106821 CAAGTCGGTG
Statistics
Matches: 174, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
30 11 0.06
31 40 0.23
32 1 0.01
33 43 0.25
34 6 0.03
35 16 0.09
36 52 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:106661 original size:69 final size:68
Alignment explanation
Indices: 106541--106820 Score: 254
Period size: 69 Copynumber: 4.2 Consensus size: 68
106531 TGGGGACGAA
* * * * *
106541 TTTT-AAGTCCACGACTCCGTCGCACCTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
106604 CCC
66 CCC
* * * ** * *
106607 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
106668 T-CC
65 TCCC
* * * * * * **
106671 TTTCAAAGTCCGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
106735 CCC
66 CCC
* * *
106738 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
106802 ACCC
65 TCCC
106806 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
106821 CAAGTCGGTG
Statistics
Matches: 168, Mismatches: 35, Indels: 19
0.76 0.16 0.09
Matches are distributed among these distances:
62 21 0.12
63 1 0.01
64 25 0.15
65 2 0.01
66 6 0.04
67 48 0.29
68 12 0.07
69 53 0.32
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:106779 original size:131 final size:131
Alignment explanation
Indices: 106545--106795 Score: 394
Period size: 131 Copynumber: 1.9 Consensus size: 131
106535 GACGAATTTT
*
106545 AAGTCCACGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* ** *
106610 TAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
106675 A
131 A
* * *
106676 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * *
106741 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
106796 TCTTTGACCC
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 108 1.00
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:106850 original size:33 final size:33
Alignment explanation
Indices: 106804--106973 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
106794 CATCTTTGAC
*
106804 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
106836 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* * * *
106869 CCTTCCCTAAAGCCCACACAAGTTAGTGACAAC
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
**
106902 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
106934 CCATTCTCTAAAGCCCACGCAAGTTGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTTGGTGGCAAA
106968 CCTTCT
1 CCTTCT
106974 AAGCCCAAAA
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
32 6 0.05
33 109 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
Found at i:106853 original size:69 final size:68
Alignment explanation
Indices: 106574--106853 Score: 168
Period size: 69 Copynumber: 4.2 Consensus size: 68
106564 ACCTTCTTTT
** * * * ***
106574 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCATGGTGCCTTGTT
1 TAAAGCCCACAACTCCGTGGCACTCTTTGACCCTTTTAAAGCCCACAACTCCGTGGCAAC-TGTT
106639 CCTT-
65 -CTTC
* * * * * * * * *
106643 TTAAGTCCACGACTCCGTGGCAC-C-TT---CCTTTCAAAGTCCGCGACTCTGTGGC-AC-CTTC
1 TAAAGCCCACAACTCCGTGGCACTCTTTGACCCTTTTAAAGCCCACAACTCCGTGGCAACTGTTC
*
106701 TTT
66 TTC
** *
106704 TCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTGT
1 T-AAAGCCCACAACTCCGTGGCACTCTTTGACCCTTTTAAAGCCCACAACTCCGTGGCAAC-TGT
*
106769 TCTTT
64 TCTTC
* * * * *
106774 TTAAGTCCACAACTTCGTGGCA-TCTTTGACCCTTTCTAAAGCCCACACAAGTCGGTGGCAAAC-
1 TAAAGCCCACAACTCCGTGGCACTCTTTGACCCTTT-TAAAG-CC-CACAACTCCGTGGC-AACT
106837 GTTC-TC
62 GTTCTTC
106843 TAAAGCCCACA
1 TAAAGCCCACA
106854 CAAGTCGGTG
Statistics
Matches: 164, Mismatches: 33, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
60 3 0.02
61 3 0.02
62 19 0.12
63 2 0.01
64 21 0.13
67 23 0.14
68 13 0.08
69 53 0.32
70 13 0.08
71 12 0.07
72 2 0.01
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (68 bp):
TAAAGCCCACAACTCCGTGGCACTCTTTGACCCTTTTAAAGCCCACAACTCCGTGGCAACTGTTC
TTC
Found at i:107038 original size:49 final size:48
Alignment explanation
Indices: 106984--107520 Score: 566
Period size: 43 Copynumber: 11.5 Consensus size: 48
106974 AAGCCCAAAA
106984 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATG
* * *
107033 TAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC---AAGTCTAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATG
* *
107076 TCGCTGGCCTTGAATCAGCATATTGGCA---C--CTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATG
* * *
107119 TAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATG
* * *
107168 TAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC---AAGTCAAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATG
* *
107211 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTATGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATG
* * *
107260 TAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC---AAGTCTAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATG
* *
107303 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATG
* *
107352 TAGCTGGCCTTGAATCAGGATATTGGTACCATCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTCTTTAAGTCCAATG
* * *
107401 TAGCTGGCCTTGAATTAGCACATTGGCA---C--CTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATG
* *
107444 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCACC---T-CTTCTTTAAGTCCAATG
* * *
107496 TAGCTAGCTTTGAATCAGCACATTG
1 TAGCTGGCCTTGAATCAGCATATTG
107521 ACATCCTTTT
Statistics
Matches: 410, Mismatches: 48, Indels: 57
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 174 0.42
44 2 0.00
45 1 0.00
46 19 0.05
47 1 0.00
48 3 0.01
49 173 0.42
50 1 0.00
52 34 0.08
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (48 bp):
TAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTTTAAGTCCAATG
Found at i:107162 original size:92 final size:92
Alignment explanation
Indices: 106984--107476 Score: 587
Period size: 92 Copynumber: 5.4 Consensus size: 92
106974 AAGCCCAAAA
*
106984 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATC
1 TAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATC
* * *
107049 AGCACATTGGCA-C--CTTC---AAGTCTAATA
60 AGCATATTGGCACCTTCTTCTTTAAGTCCAATG
* * *
107076 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTTGAATCAACATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
*
107141 TTGGCACCTTCTTCTTTAAGTCTAATG
66 TTGGCACCTTCTTCTTTAAGTCCAATG
* * * *
107168 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCAAATATCGCTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
*
107233 TTGGCACCTTCTTCTTTATGTCCAATG
66 TTGGCACCTTCTTCTTTAAGTCCAATG
* * * *
107260 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
*
107325 TTGGCACCTTCATCTTTAAGTCCAATG
66 TTGGCACCTTCTTCTTTAAGTCCAATG
* * *
107352 TAGCTGGCCTTGAATCAGGATATTGGTACCATCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATT
1 TAGCTGGCCTTGAATCAGCATATTGG---CA-C--CTTTAAGTCCAATATAGCTGGCCTTGAATC
* *
107417 AGCACATTGGCA----C--CTTTAAGTCCAATA
60 AGCATATTGGCACCTTCTTCTTTAAGTCCAATG
107444 TAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTT
107477 TCCATCTTTA
Statistics
Matches: 361, Mismatches: 28, Indels: 30
0.86 0.07 0.07
Matches are distributed among these distances:
86 42 0.12
87 1 0.00
88 2 0.01
89 6 0.02
92 270 0.75
94 1 0.00
95 2 0.01
96 1 0.00
98 36 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
TTGGCACCTTCTTCTTTAAGTCCAATG
Found at i:107509 original size:52 final size:55
Alignment explanation
Indices: 107430--107767 Score: 185
Period size: 52 Copynumber: 6.1 Consensus size: 55
107420 ACATTGGCAC
* * *
107430 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
107482 CTTTAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * *
107537 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
107602 AT
54 AT
* * * * *
107604 CTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * * *
107656 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
107709 CTTCAAGTCTAATGTCGCT-GATCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTAG-CCTTGAATCAGCACATTGACATCCTTTTTCTCAT
107764 CTTT
1 CTTT
107768 GAACTCAATA
Statistics
Matches: 223, Mismatches: 40, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
51 1 0.00
52 74 0.33
53 41 0.18
54 9 0.04
55 44 0.20
56 1 0.00
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.16
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:107641 original size:67 final size:68
Alignment explanation
Indices: 107533--107659 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
107523 ATCCTTTTTC
* * *
107533 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
107597 TCT
66 TCT
* * * * *
107600 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
107660 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:107779 original size:227 final size:228
Alignment explanation
Indices: 107448--107874 Score: 598
Period size: 227 Copynumber: 1.9 Consensus size: 228
107438 CCAATATAGC
* * *
107448 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCTGTGAATCA
107513 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * *
107577 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAAT-TAGCATA
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCT-GCATA
*
107640 TTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
194 GTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
107675 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCT-GATCGTGAA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTAGCT-GTGAA
* *
107737 TCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CTCAATATCGTTGGCCGTGAATCAACGTAT
63 TCAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATAT
* * * *
107801 TGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCA
127 TGGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCTGCA
107866 TAGTGGCAC
192 TAGTGGCAC
107875 ATTGTAATGA
Statistics
Matches: 176, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
226 9 0.05
227 117 0.66
228 49 0.28
229 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCTGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCTGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:108281 original size:31 final size:32
Alignment explanation
Indices: 108232--108491 Score: 176
Period size: 31 Copynumber: 7.9 Consensus size: 32
108222 TGGGGACGAA
* * *
108232 TTTT-AAGTCCACGACTCCGTCGCAC-TTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACTTTTCC
*
108262 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCA--C-TTTT-CC
* *
108298 TTTTAAAGTCCACAACCCCATGGTGC-CTTGTTCC
1 TTTTAAAGTCCACAACTCCGT-G-GCACTT-TTCC
* *
108332 TTTT-AAGTCCACGACTCCGTGGCAC-CTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACTTTTCC
* * * * *
108362 TTTCAAAGTCCGCGACTCTGTGGCAC-CTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACTTTTCC
*
108392 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCA--C-TTTT-CC
*
108429 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGTCCACAACTCCGTGGCA-CTT-TTCC
* *
108462 TTTTTAAGTCCACAACTTCGTGGCATCTTT
1 TTTTAAAGTCCACAACTCCGTGGCA-CTTT
108492 GACCCTTTCT
Statistics
Matches: 186, Mismatches: 25, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
30 15 0.08
31 58 0.31
32 3 0.02
33 41 0.22
34 10 0.05
35 11 0.06
36 40 0.22
37 6 0.03
38 2 0.01
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.33
Consensus pattern (32 bp):
TTTTAAAGTCCACAACTCCGTGGCACTTTTCC
Found at i:108311 original size:36 final size:34
Alignment explanation
Indices: 108257--108511 Score: 195
Period size: 36 Copynumber: 7.6 Consensus size: 34
108247 TCCGTCGCAC
*
108257 TTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 TTTCCTTTTAAAGCCCACAACTCCGTGGCAC-CTT
* * * **
108292 TTTCCCTTTTAAAGTCCACAACCCCATGGTGCCTT
1 TTT-CCTTTTAAAGCCCACAACTCCGTGGCACCTT
* * *
108327 GTTCCTTTT-AAGTCCACGACTCCGTGGCACC--
1 TTTCCTTTTAAAGCCCACAACTCCGTGGCACCTT
* * * * *
108358 -TTCCTTTCAAAGTCCGCGACTCTGTGGCACC--
1 TTTCCTTTTAAAGCCCACAACTCCGTGGCACCTT
108389 -TT-CTTTTCAAAGCCCACAACTCCGTGGCACTCTT
1 TTTCCTTTT-AAAGCCCACAACTCCGTGGCAC-CTT
108423 TTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTT
1 TTT-CCTTTTAAAGCCCACAACTCCGTGGCACCTT
* * * * *
108458 GTT-CTTTTTAAGTCCACAACTTCGTGGCATCTT
1 TTTCCTTTTAAAGCCCACAACTCCGTGGCACCTT
**
108491 TGACCCTTTCTAAAGCCCACA
1 T-TTCCTTT-TAAAGCCCACA
108512 CAAGTCGGTG
Statistics
Matches: 178, Mismatches: 30, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
30 11 0.06
31 40 0.22
32 1 0.01
33 43 0.24
34 6 0.03
35 19 0.11
36 53 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (34 bp):
TTTCCTTTTAAAGCCCACAACTCCGTGGCACCTT
Found at i:108352 original size:69 final size:68
Alignment explanation
Indices: 108232--108511 Score: 245
Period size: 69 Copynumber: 4.2 Consensus size: 68
108222 TGGGGACGAA
* * * * * *
108232 TTTT-AAGTCCACGACTCCGTCGCACTTTCTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
108295 CCC
66 CCC
* * * ** * *
108298 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGCCCACAACTCCGTGGCACTCTTTT
108359 T-CC
65 TCCC
* * * * * * **
108362 TTTCAAAGTCCGCGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
108426 CCC
66 CCC
* * *
108429 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
*
108493 ACCC
65 TCCC
108497 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
108512 CAAGTCGGTG
Statistics
Matches: 167, Mismatches: 36, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
62 21 0.13
63 1 0.01
64 25 0.15
65 2 0.01
66 6 0.04
67 47 0.28
68 12 0.07
69 53 0.32
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:108470 original size:131 final size:131
Alignment explanation
Indices: 108236--108486 Score: 385
Period size: 131 Copynumber: 1.9 Consensus size: 131
108226 GACGAATTTT
* *
108236 AAGTCCACGACTCCGTCGCACTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* ** *
108301 TAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
108366 A
131 A
* * *
108367 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * *
108432 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
108487 TCTTTGACCC
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 107 1.00
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:108541 original size:33 final size:33
Alignment explanation
Indices: 108495--108664 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
108485 CATCTTTGAC
*
108495 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
108527 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* * *
108560 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
**
108593 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
108625 CCATTCTCTAAAGCCCACGCAAGTTGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTTGGTGGCAAA
108659 CCTTCT
1 CCTTCT
108665 AAGCCCAATA
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
32 6 0.05
33 111 0.93
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
Found at i:108544 original size:69 final size:68
Alignment explanation
Indices: 108232--108544 Score: 168
Period size: 69 Copynumber: 4.7 Consensus size: 68
108222 TGGGGACGAA
* * * * *
108232 TTTT-AAGTCCACGACTCCGTCGC-ACT-TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAAGCCCACAACTCCGTGGCAACTGTTC-TTCTAAAGCCCACAACTCCGTGGCACTCTTTG
*
108294 TCCC
65 ACCC
* * * *** * * *
108298 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCCTT-TTAAGTCCACGACTCCGTGGCAC-C-TT
1 TTTTAAAGCCCACAACTCCGTGGCAAC-TGTT-CTTCTAAAGCCCACAACTCCGTGGCACTCTTT
108360 ---CC
64 GACCC
* * * * * * * *
108362 TTTCAAAGTCCGCGACTCTGTGGC-AC-CTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAAGCCCACAACTCCGTGGCAACTGTTCTTCT-AAAGCCCACAACTCCGTGGCACTCTTTG
*
108425 TCCC
65 ACCC
* * * * *
108429 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCAAC-TGTTCTTCTAAAGCCCACAACTCCGTGGCACTCTTTG
108493 ACCC
65 ACCC
* *
108497 TTTCTAAAGCCCACACAAGTCGGTGGCAAAC-GTTC-TCTAAAGCCCACA
1 TTT-TAAAG-CC-CACAACTCCGTGGC-AACTGTTCTTCTAAAGCCCACA
108545 CAAGTCGGTG
Statistics
Matches: 189, Mismatches: 39, Indels: 35
0.72 0.15 0.13
Matches are distributed among these distances:
60 3 0.02
61 3 0.02
62 19 0.10
63 2 0.01
64 21 0.11
66 4 0.02
67 37 0.20
68 14 0.07
69 54 0.29
70 17 0.09
71 13 0.07
72 2 0.01
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.31
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCAACTGTTCTTCTAAAGCCCACAACTCCGTGGCACTCTTTGA
CCC
Found at i:108728 original size:49 final size:49
Alignment explanation
Indices: 108664--109269 Score: 570
Period size: 49 Copynumber: 12.8 Consensus size: 49
108654 GCAACCCTTC
*
108664 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
108713 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
108757 -AAGTCTAATATCGCTGGCCTTGAATCGGCATATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
108799 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
108848 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
108892 -AAGTCAAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
108940 TATGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * **
108983 GAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTAATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
109032 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
109081 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
109124 TAAGTCCAATATGGCTGGCCTTGAATCAGCATATTAGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * * *
109176 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCT--TCTT
* * * * *
109231 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
109270 TCTTTATCAC
Statistics
Matches: 457, Mismatches: 66, Indels: 62
0.78 0.11 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 173 0.38
45 2 0.00
46 12 0.03
47 1 0.00
48 2 0.00
49 189 0.41
50 1 0.00
52 35 0.08
53 3 0.01
54 4 0.01
55 33 0.07
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:108853 original size:92 final size:92
Alignment explanation
Indices: 108664--109167 Score: 555
Period size: 92 Copynumber: 5.5 Consensus size: 92
108654 GCAACCCTTC
* *
108664 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
*
108729 GGCCTTGAATCAGCACATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
108757 -AAGTCTAATATCGCTGGCCTTGAATCGGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
108821 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * * *
108848 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCAAATATCGCTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
108913 GAATCAGCATATTGGCACTTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * * *
108940 TATGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTGAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
**
109005 GAATCAGCATATTGGCACCTTAATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* *
109032 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
109097 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
109124 TAAGTCCAATATGGCTGGCCTTGAATCAGCATATTAGCACCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
109168 TCCATCTTTA
Statistics
Matches: 362, Mismatches: 37, Indels: 31
0.84 0.09 0.07
Matches are distributed among these distances:
86 42 0.12
87 1 0.00
88 2 0.01
89 4 0.01
92 276 0.76
96 1 0.00
98 36 0.10
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:108911 original size:135 final size:135
Alignment explanation
Indices: 108659--109123 Score: 546
Period size: 135 Copynumber: 3.3 Consensus size: 135
108649 TGGTGGCAAC
* *
108659 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
* *
108724 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCGGCATA
65 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCAAATATCGCTGGCCTTGAATCAGCATA
108789 TTGGCA
130 TTGGCA
* *
108795 CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTTTAAGTCTAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGT
108860 AGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCAAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCAAATATCGCTGGCCTTGAATCAGCATAT
108925 TGGCA
131 TGGCA
* * * *
108930 CTTTCTTCTTTATGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTGAAGTC
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTC
* * * * * *
108989 TAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTAATCTTTAAGTCCAATGTAGCTGGCCTT
60 TAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCAAATATCGCTGGCCTT
109054 GAATCAGCATATTGGCA
119 GAATCAGCATATTGGCA
* * *
109071 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTT
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
109124 TAAGTCCAAT
Statistics
Matches: 292, Mismatches: 21, Indels: 23
0.87 0.06 0.07
Matches are distributed among these distances:
135 165 0.57
136 5 0.02
137 1 0.00
138 2 0.01
139 1 0.00
141 118 0.40
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (135 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCAAATATCGCTGGCCTTGAATCAGCATAT
TGGCA
Found at i:109133 original size:184 final size:184
Alignment explanation
Indices: 108664--109166 Score: 685
Period size: 184 Copynumber: 2.7 Consensus size: 184
108654 GCAACCCTTC
* *
108664 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
* * * *
108729 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCGGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
* **
108794 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
131 ACCTTGAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTAATCTT
* * * * *
108848 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCAAATATCGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
* * * *
108907 GGCCTTGAATCAGCATATTGGCACTTTCTTCTTTATGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
* ** *
108972 ATTGGCACCTTGAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTAATCTT
125 ATTGGCACCTTGAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTAATCTT
109032 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
* * *
109097 GGCCTTGAATTAGCACATTGGCACCTTTAAGTCCAATATGGCTGGCCTTGAATCAGCATATTAGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
109162 ACCTT
131 ACCTT
109167 TTCCATCTTT
Statistics
Matches: 273, Mismatches: 34, Indels: 24
0.82 0.10 0.07
Matches are distributed among these distances:
178 34 0.12
181 4 0.01
182 1 0.00
183 1 0.00
184 194 0.71
185 1 0.00
186 1 0.00
187 4 0.01
190 33 0.12
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (184 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
ACCTTGAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTAATCTT
Found at i:109256 original size:55 final size:56
Alignment explanation
Indices: 109121--109380 Score: 219
Period size: 55 Copynumber: 4.6 Consensus size: 56
109111 ACATTGGCAC
* *
109121 CTTTAAGTCCAATATGGCTGGCCTTGAATCAGCATATT-AGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGAGCATCCTTTTTCTCAT
* * * *
109173 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGA-CATCCTTTTTCTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGAGCATCCTTTTTCTCAT
* * * * * *
109228 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATT-G-AGC---ATC-C-TTT-T--TC-TC
109293 AT
55 AT
*
109295 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGA-CATCCTTTTTCTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGAGCATCCTTTTTCTCAT
* * *
109350 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATCGCTGGCCTTGAATCA
109381 ACGTATTGGT
Statistics
Matches: 167, Mismatches: 24, Indels: 31
0.75 0.11 0.14
Matches are distributed among these distances:
52 35 0.21
53 3 0.02
54 5 0.03
55 60 0.36
56 5 0.03
57 1 0.01
58 2 0.01
59 3 0.02
60 1 0.01
61 6 0.04
62 1 0.01
63 3 0.02
64 2 0.01
65 1 0.01
66 3 0.02
67 36 0.22
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (56 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGAGCATCCTTTTTCTCAT
Found at i:109388 original size:122 final size:123
Alignment explanation
Indices: 109170--109447 Score: 400
Period size: 122 Copynumber: 2.3 Consensus size: 123
109160 GCACCTTTTC
* * *
109170 CATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG
1 CATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG
** *
109235 CCCAATATCGTTGGCCGTGAATCAACATATTGG-CATCTTTATCACTTTTC-TCATCTT
66 CCCAATATCGTTGGCCGTGAATCAACATATTGGTCAT-TTTATCACTCGTCATCATCAT
*
109292 CATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA
1 CATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AA
* * *
109357 -CCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCTTTTATCACTCGTCATCCTCAT
65 GCCCAATATCGTTGGCCGTGAATCAACATATTGGTCATTTTATCACTCGTCATCATCAT
* * *
109415 CATCTTTAAGTCTAGTGTTGCAGGCCTTGAATC
1 CATCTTTAAGTCCAATGTTGCTGGCCTTGAATC
109448 TGCATAGTGG
Statistics
Matches: 139, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
122 101 0.73
123 38 0.27
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (123 bp):
CATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG
CCCAATATCGTTGGCCGTGAATCAACATATTGGTCATTTTATCACTCGTCATCATCAT
Found at i:109868 original size:31 final size:31
Alignment explanation
Indices: 109818--110013 Score: 153
Period size: 36 Copynumber: 6.0 Consensus size: 31
109808 TGGGGACGAA
* *
109818 TTTT-AAGTCCACGACTCCGTGGCACCTTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCT
*
109848 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-C---TT-CT
* * * *
109884 TTTTAAAGTCCGCGACTCTGTGGCACCTTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCT
* *
109915 TTTCAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTCT
109947 TCCCTTTCAAAGCCCACAACTCCGTGGCACCTTATTCT
1 T---TTT-AAAGCCCACAACTCCGTGGCACC---TTCT
* * *
109985 TTTT-AAGTCCACAACTTCGTGGCATCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTC
110014 GACCCTTTCT
Statistics
Matches: 133, Mismatches: 19, Indels: 28
0.74 0.11 0.16
Matches are distributed among these distances:
30 7 0.05
31 41 0.31
32 8 0.06
33 19 0.14
35 9 0.07
36 45 0.34
38 4 0.03
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (31 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTCT
Found at i:109907 original size:36 final size:36
Alignment explanation
Indices: 109848--110033 Score: 176
Period size: 36 Copynumber: 5.4 Consensus size: 36
109838 GGCACCTTCT
109848 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
* * * *
109884 TTTTAAAGTCCGCGACTCTGTGGCAC-C---TT--C
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
109914 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCCC
* *
109951 TTTCAAAGCCCACAACTCCGTGGCAC-CTTATT--C
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
* * * ***
109984 TTTTTAAGTCCACAACTTCGTGGCA-TCTTCGACCC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
110019 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
110034 CAAGTCGGTG
Statistics
Matches: 120, Mismatches: 19, Indels: 22
0.75 0.12 0.14
Matches are distributed among these distances:
30 5 0.04
31 18 0.15
32 3 0.03
33 25 0.21
35 12 0.10
36 53 0.44
37 4 0.03
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (36 bp):
TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
Found at i:109930 original size:67 final size:67
Alignment explanation
Indices: 109818--109979 Score: 263
Period size: 67 Copynumber: 2.4 Consensus size: 67
109808 TGGGGACGAA
*
109818 TTTT-AAGTCCACGACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TTTTAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
109882 CC
66 CC
* *
109884 TTTTAAAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TTTTAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
109949 CC
66 CC
* * *
109951 TTTCAAAGCCCACAACTCCGTGGCACCTT
1 TTTTAAAGTCCACGACTCCGTGGCACCTT
109980 ATTCTTTTTA
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
66 4 0.05
67 83 0.95
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.31
Consensus pattern (67 bp):
TTTTAAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
CC
Found at i:110028 original size:69 final size:67
Alignment explanation
Indices: 109826--110033 Score: 251
Period size: 67 Copynumber: 3.1 Consensus size: 67
109816 AATTTTAAGT
*
109826 CCACGACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT-TAA
1 CCACAACTCCGTGGCACCTTCTTTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTCTAA
*
109890 AGT
65 AGC
* * * *
109893 CCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTC-AA
1 CCACAACTCCGTGGCACCTTCTTTT-TAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTCTAA
109957 AGC
65 AGC
* * ***
109960 CCACAACTCCGTGGCACCTTATTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTCGACCCTTTCT
1 CCACAACTCCGTGGCACC---TTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTCT
110024 AAAGC
63 AAAGC
110029 CCACA
1 CCACA
110034 CAAGTCGGTG
Statistics
Matches: 122, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
67 76 0.62
68 11 0.09
69 28 0.23
70 7 0.06
ACGTcount: A:0.20, C:0.36, G:0.13, T:0.31
Consensus pattern (67 bp):
CCACAACTCCGTGGCACCTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTCTAAA
GC
Found at i:110058 original size:33 final size:33
Alignment explanation
Indices: 110017--110185 Score: 236
Period size: 33 Copynumber: 5.2 Consensus size: 33
110007 CATCTTCGAC
*
110017 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
*
110049 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
110082 CCTTCCCTAAA-CCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
**
110114 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
110146 CCATTCTCTAAAGCCCACGCAAGTTGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTTGGTGGCAAA
110180 CCTTCT
1 CCTTCT
110186 AAACCCAATA
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
32 34 0.28
33 85 0.70
34 3 0.02
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
Found at i:110109 original size:65 final size:66
Alignment explanation
Indices: 110022--110185 Score: 242
Period size: 65 Copynumber: 2.5 Consensus size: 66
110012 TCGACCCTTT
* *
110022 CTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACC-TT
1 CTAAAGCCCACACAAGTTGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACCATT
110086 CC
65 CC
** *
110088 CTAAA-CCCACACAAGTTGGTGGCAACCCCACTCTAAAGCCCACACAAGTTGGTGGCAACCATTC
1 CTAAAGCCCACACAAGTTGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCATTC
*
110152 T
66 C
*
110153 CTAAAGCCCACGCAAGTTGGTGGCAACCCTTCT
1 CTAAAGCCCACACAAGTTGGTGGCAACCCTTCT
110186 AAACCCAATA
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
64 4 0.05
65 54 0.62
66 29 0.33
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.18
Consensus pattern (66 bp):
CTAAAGCCCACACAAGTTGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCATTC
C
Found at i:110253 original size:49 final size:48
Alignment explanation
Indices: 110190--110742 Score: 553
Period size: 49 Copynumber: 11.8 Consensus size: 48
110180 CCTTCTAAAC
* * * *
110190 CCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTGTTCTTTAACT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTTTAAGT
*
110239 CCAGTGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC---AAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTTTAAGT
* * *
110282 CTAATATCGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTTTAAGT
* * *
110325 CCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTTTAAGT
*
110374 CTAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC---AAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTTTAAGT
* * * *
110417 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTCTTCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTTTAAGT
110466 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TTC---AAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTTTAAGT
* * * * * *
110509 CTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGC
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTTTAAGT
*
110558 CCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTTTAAGT
*
110607 CCAATGTAGCTGGCCTTGAATTAGCACATTGGCA-C----CTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTTTAAGT
* ** * *
110650 CTAATACAGCTAGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTT---TCTTTAAGT
* * *
110702 TCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTTT
110743 TCTCATCTTT
Statistics
Matches: 420, Mismatches: 53, Indels: 62
0.79 0.10 0.12
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 174 0.41
44 2 0.00
46 14 0.03
48 1 0.00
49 188 0.45
52 37 0.09
53 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (48 bp):
CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTTTAAGT
Found at i:110276 original size:21 final size:21
Alignment explanation
Indices: 110252--110319 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
110242 GTGTAGCTGG
110252 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** **
110273 CCTTCAAGTCTAATATCGCTGGC-
1 CCTTGAA-TC-AGCA-CATTGGCA
110296 -CTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
110316 CCTT
1 CCTT
110320 TAAGTCCAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 11 0.34
22 7 0.22
23 2 0.06
24 5 0.16
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:110308 original size:43 final size:43
Alignment explanation
Indices: 110245--110687 Score: 463
Period size: 43 Copynumber: 9.7 Consensus size: 43
110235 AACTCCAGTG
*
110245 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* *
110288 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * * *
110331 TAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
110380 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * *
110423 TCGCTGGCCTTGAATCAGCATATTGGCACATTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCAC---CTTC---AAGTCCAATA
*
110472 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * * *
110515 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGCCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATA
* *
110564 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
* * *
110613 TAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * *
110656 CAGCTAGCCTTGAATCAGCATATTGGCACCTT
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTT
110688 TTCCATCTTT
Statistics
Matches: 343, Mismatches: 36, Indels: 42
0.81 0.09 0.10
Matches are distributed among these distances:
43 172 0.50
44 2 0.01
46 20 0.06
48 2 0.01
49 144 0.42
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
Found at i:110374 original size:92 final size:92
Alignment explanation
Indices: 110231--110688 Score: 553
Period size: 92 Copynumber: 5.0 Consensus size: 92
110221 GCACCTTGTT
* * * * * *
110231 CTTTAACTCCAGTGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
110290 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
110317 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
110382 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
110409 CTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
110474 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * * * *
110501 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGCCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
*
110566 GCTGGCCTTGAATCAGCATATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
110597 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTTTAAGTCTAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
* * *
110656 CAGCTAGCCTTGAATCAGCATATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
110685 CTTT
1 CTTT
110689 TCCATCTTTA
Statistics
Matches: 332, Mismatches: 28, Indels: 24
0.86 0.07 0.06
Matches are distributed among these distances:
86 41 0.12
87 1 0.00
88 1 0.00
89 4 0.01
92 247 0.74
94 1 0.00
96 1 0.00
98 36 0.11
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:110577 original size:141 final size:141
Alignment explanation
Indices: 110247--110732 Score: 560
Period size: 141 Copynumber: 3.5 Consensus size: 141
110237 CTCCAGTGTA
* * * *
110247 GCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCTAATATCGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
* * *
110306 CACATTGG--CA--C--CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCT
66 CACATTGGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CT
* *
110365 TCTTTAAGTCTAATGTA
128 TC---AAGTCTAATATC
* * *
110382 GCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
*
110441 CATATTGGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
66 CACATTGGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
110506 AGTCTAATATC
131 AGTCTAATATC
*
110517 GCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGCCCAATGTAGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
* * * *
110582 CATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTA
66 CACATTGGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
110647 AGTCTAATA-C
131 AGTCTAATATC
* * *
110657 AGCTAGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAA
1 -GCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAA
110722 TCAGCACATTG
62 TCAGCACATTG
110733 ACATCCTTTT
Statistics
Matches: 316, Mismatches: 19, Indels: 23
0.88 0.05 0.06
Matches are distributed among these distances:
135 102 0.32
136 1 0.00
137 2 0.01
138 6 0.02
139 1 0.00
140 2 0.01
141 162 0.51
143 2 0.01
144 38 0.12
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (141 bp):
GCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
CACATTGGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
AGTCTAATATC
Found at i:110728 original size:95 final size:93
Alignment explanation
Indices: 110192--110741 Score: 404
Period size: 92 Copynumber: 5.9 Consensus size: 93
110182 TTCTAAACCC
* * * ** * *
110192 AATATAGCTGGCCTTGAATCAACATATTGGCACCTTGTTCTTTAACTCCAGTGTAGCTGGCCTTG
1 AATACAGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* *
110257 AATCAGCACATTGGCA-CCTTCAAGTCT
66 AATCAGCACATTGACATCCTTTAAGTCT
* * * *
110284 AATATC-GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAACTGGCCTT
1 AATA-CAGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
* *
110342 GAATCAGCATATTGGCACCTTCTTCTTTAAGTCT
65 GAATCAGCACATT-G-A-CATC--CTTTAAGTCT
** * * * *
110376 AATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCGCTGGCCTTG
1 AATACAGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* *
110435 AATCAGCATATTGGCACATTCTTCTTTAAGTCC
66 AATCAGCACATT-G-ACA-TC--CTTTAAGTCT
** * * * * *
110468 AATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCTAATATCGCTGGCCTTG
1 AATACAGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* * * *
110527 AATCAGCATATTGGCACCTTCATCTTTAAGCCC
66 AATCAGCACATT-G-A-CATC--CTTTAAGTCT
** * *
110560 AATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATACAGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* *
110625 AATTAGCACATTGGCA-CCTTTAAGTCT
66 AATCAGCACATTGACATCCTTTAAGTCT
* *
110652 AATACAGCTAGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCT
1 AATACAGCTAGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGCC
110717 TTGAATCAGCACATTGACATCCTTT
63 TTGAATCAGCACATTGACATCCTTT
110742 TTCTCATCTT
Statistics
Matches: 394, Mismatches: 40, Indels: 44
0.82 0.08 0.09
Matches are distributed among these distances:
86 33 0.08
87 1 0.00
89 1 0.00
90 1 0.00
91 1 0.00
92 273 0.69
93 2 0.01
94 3 0.01
95 44 0.11
96 5 0.01
97 1 0.00
98 29 0.07
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (93 bp):
AATACAGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
AATCAGCACATTGACATCCTTTAAGTCT
Found at i:110777 original size:55 final size:55
Alignment explanation
Indices: 110666--111006 Score: 200
Period size: 55 Copynumber: 6.1 Consensus size: 55
110656 CAGCTAGCCT
* * ** * * * **
110666 TGAATCAGCATATTGGCA-CC-TTTTC-CATCTTTAAGTTCAATGTAGCTGGCTT
1 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
* *
110718 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCGAATATCGTTGGCAG
1 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
* * * * *
110773 TGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATTGCTGGC
1 TGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TCATCTTTAAGCCCAATATCGTTGGC
*
110838 CT
54 CG
* * * * * *
110840 TGAATCAGCATATTGGCA-CC---TTCATCATCTTTAAAACCCAATGTTGTTGGCCT
1 TGAATCAGCACATTGACATCCTTTTTC-TCATCTTT-AAGCCCAATATCGTTGGCCG
* * * * * * *
110893 TGAATCAGCACATTGGCA---TTTTTCTCATCTTCAAGTCTAATGTCGCTGACCG
1 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
110945 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCG
1 TGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCG
111000 TGAATCA
1 TGAATCA
111007 ACGTATTGGT
Statistics
Matches: 225, Mismatches: 41, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
52 56 0.25
53 42 0.19
54 9 0.04
55 63 0.28
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 35 0.16
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (55 bp):
TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
Found at i:110853 original size:67 final size:68
Alignment explanation
Indices: 110745--110871 Score: 168
Period size: 67 Copynumber: 1.9 Consensus size: 68
110735 ATCCTTTTTC
* * *
110745 TCATCTTTAAGCCGAATATCGTTGGCAGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCGAATATCGCTGGCAGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
110809 TCT
66 TCT
* ** *
110812 TCATCTTTAAGTCC-AATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAG-CCGAATATCGCTGGCAGTGAATCAACATATTGGCACCTTCATCATCTTT
110872 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 45 0.88
68 6 0.12
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCGAATATCGCTGGCAGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:110921 original size:53 final size:52
Alignment explanation
Indices: 110812--111006 Score: 158
Period size: 53 Copynumber: 3.7 Consensus size: 52
110802 TTTCTCATCT
** * * * **
110812 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTC
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC
* * * *
110863 ATCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTC
1 -TCATCTTT-AAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC
* ** * * * *
110917 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTC
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCA---TTTTTC
* *
110972 TCATCTTTGAACCCAATATCGTTGGCCGTGAATCA
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCA
111007 ACGTATTGGT
Statistics
Matches: 114, Mismatches: 24, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
52 38 0.33
53 40 0.35
54 3 0.03
55 33 0.29
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC
Found at i:110992 original size:227 final size:228
Alignment explanation
Indices: 110662--111086 Score: 590
Period size: 227 Copynumber: 1.9 Consensus size: 228
110652 AATACAGCTA
* * * **
110662 GCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGC
1 GCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCAGC
*
110727 ACATTGACATCCTTTTTCTCATCTTTAAGCCGAATATCGTTGGCAGTGAATCAACATATTGG-CA
66 ACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCAGTGAATCAACATATTGGTCA
** * * * *
110791 TCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
131 T-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCGTGAATCAGCATAGTG
110855 GCACCTTCATCATCTTTAAAACCCAATGTTGTTG
195 GCACCTTCATCATCTTTAAAACCCAATGTTGTTG
* *
110889 GCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAATCA
1 GCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAATCA
* *
110952 GCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATTGG
64 GCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCAGTGAATCAACATATTGG
* * * * *
111016 TCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCGTGAATCTGCATAG
128 TCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCGTGAATCAGCATAG
111081 TGGCAC
193 TGGCAC
111087 ATTGCAATGA
Statistics
Matches: 172, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
226 7 0.04
227 116 0.67
228 49 0.28
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.36
Consensus pattern (228 bp):
GCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCAGC
ACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCAGTGAATCAACATATTGGTCA
TTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCGTGAATCAGCATAGTGG
CACCTTCATCATCTTTAAAACCCAATGTTGTTG
Found at i:111523 original size:36 final size:34
Alignment explanation
Indices: 111444--111703 Score: 179
Period size: 31 Copynumber: 7.9 Consensus size: 34
111434 TGGGGACGAA
* * *
111444 TTTT-AAGTCCACGACTCCGTCGCACC---TTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
*
111474 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-CTTTTT-CC
* * ** *
111510 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
* *
111544 TTTT-AAGTCCACGACACCGTGGCACC---TTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
* * * *
111574 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
* *
111604 TTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTTTT-CC
*
111641 TTTTAAAG-CCTACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGTCC-ACAACTCCGTGGCACCTTTTTCC
* * *
111674 TTTTTAAGTCCACAACTTCGTGGCATCTTT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTT
111704 GACCCTTTCT
Statistics
Matches: 185, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
30 15 0.08
31 58 0.31
32 2 0.01
33 41 0.22
34 8 0.04
35 16 0.09
36 40 0.22
37 5 0.03
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.33
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTTTTCC
Found at i:111682 original size:131 final size:131
Alignment explanation
Indices: 111448--111686 Score: 372
Period size: 131 Copynumber: 1.8 Consensus size: 131
111438 GACGAATTTT
*
111448 AAGTCCACGACTCCGTCGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
**
111513 TAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACACCGTGGCACCTTCCTTTC
66 TAAAGTCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACGACACCGTGGCACCTTCCTTTC
111578 A
131 A
* * * *
111579 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
111644 TAAAG-CCTACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCAC
66 TAAAGTCC-ACAACCCCATGGCACCTTGTTCCTTTTAAGTCCAC
111687 AACTTCGTGG
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
130 2 0.02
131 95 0.98
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGTCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACGACACCGTGGCACCTTCCTTTC
A
Found at i:111717 original size:69 final size:69
Alignment explanation
Indices: 111444--111723 Score: 237
Period size: 69 Copynumber: 4.2 Consensus size: 69
111434 TGGGGACGAA
* *
111444 TTTT-AAGTCCACGACTCCGTCGCACC---TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCTTTTT-AAGCCCACAACTCCGTGGCACTCTTT
111505 TTCCC
65 TTCCC
* * ** * * * *
111510 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACACCGTGGCAC-C---T
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTT
111571 T-CC
66 TCCC
* * * * * *
111574 TTTCAAAGTCCGCGACTCTGTGGCACC---TTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCTTTT-TAAGCCCACAACTCCGTGGCACTCTTT
111636 TTCCC
65 TTCCC
* *
111641 TTTTAAAG-CCTACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTT
1 TTTTAAAGTCC-ACAACTCCGTGGCACCTTGTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTT
**
111704 GACCC
65 TTCCC
*
111709 TTTCTAAAGCCCACA
1 TTT-TAAAGTCCACA
111724 CAAGTCGGTG
Statistics
Matches: 164, Mismatches: 34, Indels: 29
0.72 0.15 0.13
Matches are distributed among these distances:
61 6 0.04
62 17 0.10
63 1 0.01
64 21 0.13
65 2 0.01
66 8 0.05
67 38 0.23
68 12 0.07
69 43 0.26
70 16 0.10
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.33
Consensus pattern (69 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTT
TCCC
Found at i:111748 original size:33 final size:33
Alignment explanation
Indices: 111707--111876 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
111697 CATCTTTGAC
111707 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
111739 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
111772 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
111805 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
111837 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
111871 CCTTCT
1 CCTTCT
111877 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
32 6 0.05
33 110 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:111940 original size:49 final size:49
Alignment explanation
Indices: 111876--112481 Score: 633
Period size: 49 Copynumber: 12.8 Consensus size: 49
111866 GCAACCCTTC
*
111876 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
111925 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
111969 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
112011 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
112060 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
112104 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
112152 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
112196 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
112244 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
112293 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
112336 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * * *
112388 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCT--TCTT
* * * * *
112443 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
112482 TCTTTATCAC
Statistics
Matches: 468, Mismatches: 55, Indels: 62
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 174 0.37
44 2 0.00
45 1 0.00
46 19 0.04
47 1 0.00
48 3 0.01
49 188 0.40
50 1 0.00
52 37 0.08
53 3 0.01
54 4 0.01
55 33 0.07
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:111987 original size:43 final size:43
Alignment explanation
Indices: 111871--112378 Score: 539
Period size: 43 Copynumber: 11.1 Consensus size: 43
111861 CGGTGGCAAC
*
111871 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTC-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
111915 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
111964 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
112007 CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
112050 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
112099 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
112142 CCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
112191 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
112234 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA
1 CC-T--TC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
112283 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA
1 -C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
112332 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
112375 CCTT
1 CCTT
112379 TTCCATCTTT
Statistics
Matches: 398, Mismatches: 40, Indels: 52
0.81 0.08 0.11
Matches are distributed among these distances:
43 180 0.45
44 3 0.01
45 1 0.00
46 24 0.06
47 4 0.01
48 4 0.01
49 179 0.45
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
CCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:112065 original size:92 final size:92
Alignment explanation
Indices: 111876--112379 Score: 609
Period size: 92 Copynumber: 5.5 Consensus size: 92
111866 GCAACCCTTC
* *
111876 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
*
111941 GGCCTTGAATCAGCACATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
111969 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
112033 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
112060 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
112125 GAATCAGCATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * * *
112152 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
112217 GAATCAGCATATTGGCACCTTCATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* *
112244 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
112309 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
112336 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
112380 TCCATCTTTA
Statistics
Matches: 372, Mismatches: 27, Indels: 31
0.87 0.06 0.07
Matches are distributed among these distances:
86 42 0.11
87 1 0.00
88 2 0.01
89 4 0.01
92 285 0.77
94 1 0.00
96 1 0.00
98 36 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:112412 original size:52 final size:55
Alignment explanation
Indices: 112333--112697 Score: 239
Period size: 52 Copynumber: 6.6 Consensus size: 55
112323 ACATTGGCAC
* *
112333 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
112385 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
112440 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
112505 AT
54 AT
* * *
112507 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * * *
112559 CTTTAAAACCCAATGTTGTTCGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
112612 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
112667 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCA
112698 ACGTACTGGT
Statistics
Matches: 247, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 76 0.31
53 41 0.17
54 9 0.04
55 64 0.26
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 37 0.15
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:112544 original size:67 final size:68
Alignment explanation
Indices: 112436--112562 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
112426 ATCCTTTTTC
* * *
112436 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
112500 TCT
66 TCT
* * * *
112503 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
112563 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:112680 original size:227 final size:228
Alignment explanation
Indices: 112353--112777 Score: 599
Period size: 227 Copynumber: 1.9 Consensus size: 228
112343 AATATAGCTG
* * * **
112353 GCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGC
1 GCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCAGC
*
112418 ACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-CA
66 ACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATACTGGTCA
** * * *
112482 TCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
131 T-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGTG
112546 GCACCTTCATCATCTTTAAAACCCAATGTTGTTC
195 GCACCTTCATCATCTTTAAAACCCAATGTTGTTC
* *
112580 GCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAATCA
1 GCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAATCA
*
112643 GCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTACTGG
64 GCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATACTGG
* * * * * *
112707 TCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCTAGTGTTGCAGGCCTTGAATCTGCATAG
128 TCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
112772 TGGCAC
193 TGGCAC
112778 ATTGCAATGA
Statistics
Matches: 173, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
226 7 0.04
227 117 0.68
228 49 0.28
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (228 bp):
GCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCAGC
ACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATACTGGTCA
TTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGTGG
CACCTTCATCATCTTTAAAACCCAATGTTGTTC
Found at i:112692 original size:55 final size:52
Alignment explanation
Indices: 112555--112697 Score: 142
Period size: 55 Copynumber: 2.7 Consensus size: 52
112545 GGCACCTTCA
* * * *
112555 TCATCTTTAAAACCCAATGTTGTTCGCCTTGAATCAGCACATTGGCATTTTTC
1 TCATCTTT-AAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACATTTTTC
* ** * * *
112608 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTC
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACA---TTTTTC
* *
112663 TCATCTTTGAACCCAATATCGTTGGCCGTGAATCA
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCA
112698 ACGTACTGGT
Statistics
Matches: 69, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
52 29 0.42
53 7 0.10
55 33 0.48
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACATTTTTC
Found at i:113214 original size:36 final size:33
Alignment explanation
Indices: 113135--113389 Score: 181
Period size: 31 Copynumber: 7.8 Consensus size: 33
113125 TGGGGACGAA
* * *
113135 TTTT-AAGTCCACGACTCTGTGGCAGC--TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
*
113164 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCAC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTTC-C
*
113201 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTT-TTCC
* * *
113235 ATTTAAA-TCCACGACTCCGTGGTACC--TTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
* ** * *
113265 TTTCAAAGTCTGCGACTCTGTGGCACC--TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
*
113295 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTT-CC
* *
113332 TTTCAAAGCCCACAACTCCGTGGCACCTTATT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTT-TTCC
* *
113365 TTTTTAAGTCCACAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
113390 TCTTCGACCC
Statistics
Matches: 181, Mismatches: 27, Indels: 32
0.75 0.11 0.13
Matches are distributed among these distances:
29 4 0.02
30 13 0.07
31 51 0.28
32 2 0.01
33 38 0.21
34 11 0.06
35 11 0.06
36 42 0.23
37 9 0.05
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.32
Consensus pattern (33 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
Found at i:113255 original size:33 final size:35
Alignment explanation
Indices: 113169--113389 Score: 128
Period size: 36 Copynumber: 6.6 Consensus size: 35
113159 GCTTCTTTTC
* * *
113169 AAAGCCCACAACTCCGTGGCACTCTTTTTCACTTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTGTTCACATTT
*
113205 AAAGTCCACAACCCCGTGGCACCTTGTTC-CATTT
1 AAAGTCCACAACTCCGTGGCACCTTGTTCACATTT
* *
113239 AAA-TCCACGACTCCGTGGTACC---TTC-C-TTT
1 AAAGTCCACAACTCCGTGGCACCTTGTTCACATTT
** * * * *
113268 CAAAGTCTGCGACTCTGTGGCACCTTCTT----TTC
1 -AAAGTCCACAACTCCGTGGCACCTTGTTCACATTT
* * *
113300 AAAGCCCACAACTCCGTGGCACTCTTTTTC-CCTTT
1 AAAGTCCACAACTCCGTGGCAC-CTTGTTCACATTT
* * *
113335 CAAAGCCCACAACTCCGTGGCACCTTATT--CTTTT
1 -AAAGTCCACAACTCCGTGGCACCTTGTTCACATTT
* *
113369 TAAGTCCACAACTTCGTGGCA
1 AAAGTCCACAACTCCGTGGCA
113390 TCTTCGACCC
Statistics
Matches: 151, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
29 3 0.02
30 7 0.05
31 32 0.21
32 7 0.05
33 34 0.23
34 13 0.09
35 13 0.09
36 42 0.28
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (35 bp):
AAAGTCCACAACTCCGTGGCACCTTGTTCACATTT
Found at i:113377 original size:131 final size:131
Alignment explanation
Indices: 113146--113387 Score: 385
Period size: 131 Copynumber: 1.8 Consensus size: 131
113136 TTTAAGTCCA
* * *
113146 CGACTCTGTGGCAGCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCACTTTTAAAGTC
1 CGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCACTTTCAAAGCC
* *
113211 CACAACCCCGTGGCACCTTGTTCCATTTAAATCCACGACTCCGTGGTACCTTCCTTTCAAAGTCT
66 CACAACCCCGTGGCACCTTATTCCATTTAAATCCACAACTCCGTGGTACCTTCCTTTCAAAGTCT
113276 G
131 G
*
113277 CGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTCAAAGCC
1 CGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCACTTTCAAAGCC
* ** * *
113342 CACAACTCCGTGGCACCTTATTCTTTTTAAGTCCACAACTTCGTGG
66 CACAACCCCGTGGCACCTTATTCCATTTAAATCCACAACTCCGTGG
113388 CATCTTCGAC
Statistics
Matches: 100, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 100 1.00
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.31
Consensus pattern (131 bp):
CGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCACTTTCAAAGCC
CACAACCCCGTGGCACCTTATTCCATTTAAATCCACAACTCCGTGGTACCTTCCTTTCAAAGTCT
G
Found at i:113439 original size:33 final size:33
Alignment explanation
Indices: 113398--113560 Score: 240
Period size: 33 Copynumber: 5.0 Consensus size: 33
113388 CATCTTCGAC
*
113398 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
*
113430 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
113463 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
**
113496 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
*
113528 CCATTCTCTAAAGCCCACGCAAGTTGGTGGCAA
1 CC-TTCTCTAAAGCCCACACAAGTTGGTGGCAA
113561 CCCGTCTAAG
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
32 7 0.06
33 110 0.93
34 1 0.01
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.18
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
Found at i:113635 original size:49 final size:49
Alignment explanation
Indices: 113567--114106 Score: 564
Period size: 49 Copynumber: 11.6 Consensus size: 49
113557 GCAACCCGTC
* * * *
113567 TAAGCCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
113616 TAACTCCAGTGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
113660 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
113702 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
113751 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * *
113795 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
113843 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * * *
113887 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
113935 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
113984 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* ** * *
114027 TAAGTCTAATACAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CTTCTT
* *
114079 TAAGTTCAATGTAGCTGGCTTTGAATCA
1 TAAGTCCAATGTAGCTGGCCTTGAATCA
114107 ATACATTGAC
Statistics
Matches: 412, Mismatches: 49, Indels: 57
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 172 0.42
44 1 0.00
45 1 0.00
46 19 0.05
47 1 0.00
48 2 0.00
49 187 0.45
50 1 0.00
52 26 0.06
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
Found at i:113658 original size:21 final size:21
Alignment explanation
Indices: 113634--113701 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
113624 GTGTAGCTGG
113634 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** **
113655 CCTTCAAGTCTAATATCGCTGGC-
1 CCTTGAA-TC-AGCA-CATTGGCA
113678 -CTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
113698 CCTT
1 CCTT
113702 TAAGTCCAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 11 0.34
22 7 0.22
23 2 0.06
24 5 0.16
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:113690 original size:43 final size:43
Alignment explanation
Indices: 113627--114069 Score: 481
Period size: 43 Copynumber: 9.7 Consensus size: 43
113617 AACTCCAGTG
*
113627 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* *
113670 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * * *
113713 TAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
113762 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * *
113805 TCGCTGGCCTTGAATCAGCATATTGGCACATTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCAC---CTTC---AAGTCCAATA
*
113854 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * *
113897 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATA
* *
113946 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
* * *
113995 TAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* *
114038 CAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTT
114070 TTCCATCTTT
Statistics
Matches: 346, Mismatches: 33, Indels: 42
0.82 0.08 0.10
Matches are distributed among these distances:
43 173 0.50
44 2 0.01
46 20 0.06
48 2 0.01
49 146 0.42
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (43 bp):
TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
Found at i:113756 original size:92 final size:92
Alignment explanation
Indices: 113613--114070 Score: 571
Period size: 92 Copynumber: 5.0 Consensus size: 92
113603 GCACCTTCTT
* * * * * *
113613 CTTTAACTCCAGTGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
113672 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
113699 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
113764 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
113791 CTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
113856 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
113883 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
*
113948 GCTGGCCTTGAATCAGCATATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
113979 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTTTAAGTCTAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
* *
114038 CAGCTGGCCTTGAATCAGCATATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
114067 CTTT
1 CTTT
114071 TCCATCTTTA
Statistics
Matches: 335, Mismatches: 25, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
86 41 0.12
87 1 0.00
88 1 0.00
89 4 0.01
92 250 0.75
94 1 0.00
96 1 0.00
98 36 0.11
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:113955 original size:141 final size:135
Alignment explanation
Indices: 113629--114069 Score: 581
Period size: 141 Copynumber: 3.2 Consensus size: 135
113619 CTCCAGTGTA
* * *
113629 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
* * *
113694 GG--CA--C--CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTA
66 GGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---A
* *
113753 AGTCTAATGTA
125 AGTCTAATATC
*
113764 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
113829 GGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTA
66 GGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTA
113894 ATATC
131 ATATC
* *
113899 GCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATAGCTGGCCTTGAATCAG
* * *
113964 CATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTA
60 CATATTGGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCA
114029 AGTCTAATA-C
125 AGTCTAATATC
*
114039 AGCTGGCCTTGAATCAGCATATTGGCACCTT
1 -GCTGGCCTTGAATCAGCACATTGGCACCTT
114070 TTCCATCTTT
Statistics
Matches: 280, Mismatches: 13, Indels: 23
0.89 0.04 0.07
Matches are distributed among these distances:
135 102 0.36
136 1 0.00
137 2 0.01
138 7 0.03
139 1 0.00
140 3 0.01
141 164 0.59
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (135 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
GGCACATTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTA
ATATC
Found at i:114159 original size:55 final size:55
Alignment explanation
Indices: 114100--114390 Score: 184
Period size: 55 Copynumber: 5.2 Consensus size: 55
114090 TAGCTGGCTT
*
114100 TGAATCAATACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
1 TGAATCAACACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
* * * *
114155 TGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATTGCTGGC
1 TGAATCAACACATT-G-A-C---ATC-C-TTT-T--TC-TCATCTTTAAGCCCAATATCGTTGGC
*
114220 CT
54 CG
* * * * * * *
114222 TGAATCAGCATATTGGCA-CC---TTCATCATCTTTAAAACCCAATGTTGTTGGCCT
1 TGAATCAACACATTGACATCCTTTTTC-TCATCTTT-AAGCCCAATATCGTTGGCCG
* * * * * * * *
114275 TGAATCAGCACATTGGCA---TTTTTCTCATCTTCAAGTCTAATGTCGCTGACCG
1 TGAATCAACACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
* *
114327 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGTCG
1 TGAATCAACACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCG
114382 TGAATCAAC
1 TGAATCAAC
114391 GTATTGGTCC
Statistics
Matches: 185, Mismatches: 31, Indels: 40
0.72 0.12 0.16
Matches are distributed among these distances:
52 40 0.22
53 40 0.22
54 4 0.02
55 44 0.24
56 3 0.02
57 1 0.01
58 1 0.01
59 1 0.01
60 1 0.01
61 4 0.02
62 1 0.01
63 3 0.02
64 2 0.01
66 3 0.02
67 37 0.20
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (55 bp):
TGAATCAACACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
Found at i:114235 original size:67 final size:68
Alignment explanation
Indices: 114127--114253 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
114117 ATCCTTTTTC
* * *
114127 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
114191 TCT
66 TCT
* * * *
114194 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
114254 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:114371 original size:227 final size:228
Alignment explanation
Indices: 114042--114468 Score: 585
Period size: 227 Copynumber: 1.9 Consensus size: 228
114032 CTAATACAGC
* * * **
114042 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
*
114107 ATACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 ACACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * * * *
114171 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCGTGAATCAGCATAG
114235 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
114269 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
* * *
114332 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGTCGTGAATCAACGTATT
64 CAACACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * *
114396 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCGTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCGTGAATCAGCAT
114461 AGTGGCAC
193 AGTGGCAC
114469 ATTGCAATGA
Statistics
Matches: 173, Mismatches: 22, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
226 7 0.04
227 117 0.68
228 49 0.28
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
ACACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCGTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:114879 original size:31 final size:31
Alignment explanation
Indices: 114826--115080 Score: 163
Period size: 31 Copynumber: 7.8 Consensus size: 31
114816 TGGGGATGAA
* *
114826 TTTT-AAGTCCACGACTTCGTGGCACCTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCT
* *
114856 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C---TT-CT
* *
114892 TTTTAAAGTCCACAACCCCGTGGCACCTTGT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCT
* ** *
114923 TCCTTTTAAGTCCATGACTCCGTGGCACCTTCC
1 T--TTTAAAGTCCACAACTCCGTGGCACCTTCT
* * * **
114956 TTTCAAAGTCCGCGACTCTATGGCACCTTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCT
* * * *
114987 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C---TT-CT
* *
115023 TTTTAAAGCCCACAACTACGTGGCACCTTATTCT
1 TTTTAAAGTCCACAACTCCGTGGCACC---TTCT
*
115057 TTTT-AAGTCCACAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
115081 TCTTTCACCC
Statistics
Matches: 179, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
30 4 0.02
31 64 0.36
32 4 0.02
33 43 0.24
34 5 0.03
35 10 0.06
36 49 0.27
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.33
Consensus pattern (31 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTCT
Found at i:114905 original size:36 final size:34
Alignment explanation
Indices: 114856--115105 Score: 185
Period size: 36 Copynumber: 7.4 Consensus size: 34
114846 GGCACCTTCT
114856 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * *
114892 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* **
114926 TTTT-AAGTCCATGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
114956 TTTCAAAGTCCGCGACTCTATGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
114986 TTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* *
115023 TTTTAAAGCCCACAACTACGTGGCACCTTATT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
115056 TTTTTAAGTCCACAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
115091 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
115106 CAAGTCAGTG
Statistics
Matches: 175, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
30 11 0.06
31 38 0.22
32 1 0.01
33 45 0.26
34 6 0.03
35 16 0.09
36 53 0.30
37 5 0.03
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:115078 original size:131 final size:131
Alignment explanation
Indices: 114845--115080 Score: 382
Period size: 131 Copynumber: 1.8 Consensus size: 131
114835 CACGACTTCG
* * *
114845 TGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCC
1 TGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACCA
* **
114910 CGTGGCACCTTGTTCCTTTTAAGTCCATGACTCCGTGGCACCTTCCTTTCAAAGTCCGCGACTCT
66 CGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCCGCGACTCT
114975 A
131 A
* *
114976 TGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTA
1 TGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACCA
* *
115041 CGTGGCACCTTATTCTTTTTAAGTCCACAACTTCGTGGCA
66 CGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCA
115081 TCTTTCACCC
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 95 1.00
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.33
Consensus pattern (131 bp):
TGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACCA
CGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCCGCGACTCT
A
Found at i:115135 original size:33 final size:33
Alignment explanation
Indices: 115089--115258 Score: 209
Period size: 33 Copynumber: 5.2 Consensus size: 33
115079 CATCTTTCAC
*
115089 CCTT-TCTAAAGCCCACACAAGTCAGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
115121 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * ** *
115154 CCTTCCCTAAAGCCCACAAAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
115187 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
115219 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
115253 CCTTCT
1 CCTTCT
115259 AAGCCCAATA
Statistics
Matches: 116, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
32 6 0.05
33 107 0.92
34 3 0.03
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:115323 original size:49 final size:49
Alignment explanation
Indices: 115258--115805 Score: 571
Period size: 49 Copynumber: 11.7 Consensus size: 49
115248 GCAACCCTTC
* * *
115258 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
115307 TAACTCCAGTGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
115351 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
115393 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
115442 TAAGTCTAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
115486 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
115534 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * * *
115578 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
115626 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
115675 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* ** * * *
115718 TAAGTCTAATACAGCTAGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CTTCTT
* * *
115770 TAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
115806 ACATCATTTT
Statistics
Matches: 419, Mismatches: 50, Indels: 57
0.80 0.10 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 170 0.41
44 2 0.00
45 1 0.00
46 19 0.05
47 1 0.00
48 3 0.01
49 187 0.45
50 1 0.00
52 33 0.08
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
Found at i:115349 original size:21 final size:21
Alignment explanation
Indices: 115325--115392 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
115315 GTGTAGCTGG
115325 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** **
115346 CCTTCAAGTCTAATATCGCTGGC-
1 CCTTGAA-TC-AGCA-CATTGGCA
115369 -CTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
115389 CCTT
1 CCTT
115393 TAAGTCCAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 11 0.34
22 7 0.22
23 2 0.06
24 5 0.16
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:115381 original size:43 final size:43
Alignment explanation
Indices: 115318--115760 Score: 463
Period size: 43 Copynumber: 9.7 Consensus size: 43
115308 AACTCCAGTG
*
115318 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* *
115361 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * * *
115404 TAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
*
115453 TAGCTAGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * *
115496 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
*
115545 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * *
115588 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATA
* *
115637 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATA
* * *
115686 TAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
* * *
115729 CAGCTAGCCTTGAATCAGCATATTGGCACCTT
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTT
115761 TTCCATCTTT
Statistics
Matches: 343, Mismatches: 36, Indels: 42
0.81 0.09 0.10
Matches are distributed among these distances:
43 170 0.50
44 3 0.01
46 20 0.06
48 3 0.01
49 144 0.42
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATA
Found at i:115447 original size:92 final size:92
Alignment explanation
Indices: 115304--115761 Score: 562
Period size: 92 Copynumber: 5.0 Consensus size: 92
115294 GCACCTTCTT
* * * * * *
115304 CTTTAACTCCAGTGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
115363 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
115390 CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
*
115455 GCTAGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
115482 CTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
115547 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * * *
115574 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
*
115639 GCTGGCCTTGAATCAGCATATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
115670 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTTTAAGTCTAATA
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
* * *
115729 CAGCTAGCCTTGAATCAGCATATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
115758 CTTT
1 CTTT
115762 TCCATCTTTA
Statistics
Matches: 334, Mismatches: 26, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
86 41 0.12
87 1 0.00
88 1 0.00
89 4 0.01
92 249 0.75
94 1 0.00
96 1 0.00
98 36 0.11
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:115646 original size:141 final size:135
Alignment explanation
Indices: 115324--115760 Score: 564
Period size: 141 Copynumber: 3.2 Consensus size: 135
115314 AGTGTAGCTG
* *
115324 GCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA
1 GCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* * *
115389 ----C--CTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTC
66 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTC
* *
115448 TAATGTAGCTA
125 TAATATCGCTA
* *
115459 GCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 GCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
115524 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATAT
66 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATAT
*
115589 CGCTG
131 CGCTA
* * *
115594 GCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATA
1 GCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATAGCTGGCCTTGAATCAGCACA
* *
115659 TTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTC
60 TTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTC
115724 TAATA-CAGCTA
125 TAATATC-GCTA
*
115735 GCCTTGAATCAGCATATTGGCACCTT
1 GCCTTGAATCAGCACATTGGCACCTT
115761 TTCCATCTTT
Statistics
Matches: 275, Mismatches: 14, Indels: 23
0.88 0.04 0.07
Matches are distributed among these distances:
135 99 0.36
136 1 0.00
138 7 0.03
139 1 0.00
140 3 0.01
141 164 0.60
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (135 bp):
GCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATAT
CGCTA
Found at i:115721 original size:184 final size:184
Alignment explanation
Indices: 115258--115760 Score: 703
Period size: 184 Copynumber: 2.7 Consensus size: 184
115248 GCAACCCTTC
* * * *
115258 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAACTCCAGTGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
* *
115323 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATAGCTGGCCTTGAATCAGCACATTGGC
* *
115388 ACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
131 ACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
115442 TAAGTCTAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATATCGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
* * *
115501 GGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCTAATATAGCTGGCCTTGAATCAGCAC
* **
115566 ATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
125 ATTGGCACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
115626 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
* * * *
115691 GGCCTTGAATTAGCACATTGGCACCTTTAAGTCTAATACAGCTAGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATAGCTGGCCTTGAATCAGCACATTGGC
115756 ACCTT
131 ACCTT
115761 TTCCATCTTT
Statistics
Matches: 276, Mismatches: 31, Indels: 24
0.83 0.09 0.07
Matches are distributed among these distances:
178 33 0.12
181 4 0.01
182 1 0.00
183 1 0.00
184 197 0.71
185 1 0.00
186 1 0.00
187 4 0.01
190 34 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (184 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATAGCTGGCCTTGAATCAGCACATTGGC
ACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:115850 original size:55 final size:54
Alignment explanation
Indices: 115791--116079 Score: 178
Period size: 55 Copynumber: 5.1 Consensus size: 54
115781 TAGCTAGCTT
*
115791 TGAATCAGCACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
1 TGAATCAGCATATTGACATCATTTTTCTCATCTTTAA-CCCAATATCGTTGGCCG
* * * **
115846 TGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATTGCAGGC
1 TGAATCAGCATATT-G-A-C---ATCA--TTT-T--TC-TCATCTTTAA-CCCAATATCGTTGGC
*
115911 CT
53 CG
* * * * *
115913 TGAATCAGCATATTGGCA-C---CTTCATCATCTTTAAAACCCAATGTTGTTGGCCT
1 TGAATCAGCATATTGACATCATTTTTC-TCATCTTT--AACCCAATATCGTTGGCCG
* * * * * * *
115966 TGAATCAGCACATTG---GCATTTTTCTCATCTTCAACTCTAATGTCGCTGACCG
1 TGAATCAGCATATTGACATCATTTTTCTCATCTTTAAC-CCAATATCGTTGGCCG
*
116018 TGAATCAGCATATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCG
1 TGAATCAGCATATTGACATCATTTTTCTCATCTTT-AACCCAATATCGTTGGCCG
116073 TGAATCA
1 TGAATCA
116080 ACGTATTGGT
Statistics
Matches: 180, Mismatches: 31, Indels: 46
0.70 0.12 0.18
Matches are distributed among these distances:
51 4 0.02
52 35 0.19
53 34 0.19
54 6 0.03
55 45 0.25
56 4 0.02
57 1 0.01
58 1 0.01
60 1 0.01
61 5 0.03
63 3 0.02
64 2 0.01
66 3 0.02
67 36 0.20
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (54 bp):
TGAATCAGCATATTGACATCATTTTTCTCATCTTTAACCCAATATCGTTGGCCG
Found at i:115926 original size:67 final size:68
Alignment explanation
Indices: 115818--115944 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
115808 ATCATTTTTC
** * *
115818 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCAGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
115882 TCT
66 TCT
* * * *
115885 TCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCAGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
115945 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCAGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:116062 original size:227 final size:228
Alignment explanation
Indices: 115735--116159 Score: 583
Period size: 227 Copynumber: 1.9 Consensus size: 228
115725 AATACAGCTA
* * * **
115735 GCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCTTTGAATCAGC
1 GCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAACTTCAATGTAGCTAGCCGTGAATCAGC
115800 ACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-CA
66 ACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGTCA
** * *
115864 TCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATATTG
131 T-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGTG
115928 GCACCTTCATCATCTTTAAAACCCAATGTTGTTG
195 GCACCTTCATCATCTTTAAAACCCAATGTTGTTG
* *
115962 GCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAC-TCTAATGTCGCT-GACCGTGAATC
1 GCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAACTTC-AATGTAGCTAG-CCGTGAATC
* * *
116024 AGCATATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATTG
63 AGCACATTGACATCATTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATTG
* * * * * *
116088 GTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCTAGTGTTGCAGGCCTTGAATCTGCATA
127 GTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATA
116153 GTGGCAC
192 GTGGCAC
116160 ATTGCAATGA
Statistics
Matches: 172, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
226 8 0.05
227 114 0.66
228 50 0.29
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (228 bp):
GCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAACTTCAATGTAGCTAGCCGTGAATCAGC
ACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGTCA
TTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGTGG
CACCTTCATCATCTTTAAAACCCAATGTTGTTG
Found at i:116571 original size:31 final size:31
Alignment explanation
Indices: 116517--116771 Score: 176
Period size: 31 Copynumber: 7.8 Consensus size: 31
116507 TGGGGATGAA
* * *
116517 TTTT-AAGTCCACGACTCCGTGGCACCTTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCC
*
116547 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-C---TT-CC
* *
116583 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACC---TTCC
* *
116617 TTTT-AAGTCCACGACTCCGTGGCACCTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCC
* * * **
116647 TTTCAAAG-TCAGCGACTCTATGGCACCTT-C
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTCC
116677 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-C---TT-CC
*
116714 TTTTAAAGCCCACAACTCCGTGGCACCTTATTC
1 TTTTAAAGCCCACAACTCCGTGGCACC-T-TCC
* * *
116747 TTTTTAAGTCCACAACTTCGTGGCA
1 TTTTAAAGCCCACAACTCCGTGGCA
116772 TCTTTCACCC
Statistics
Matches: 185, Mismatches: 23, Indels: 31
0.77 0.10 0.13
Matches are distributed among these distances:
30 17 0.09
31 51 0.28
32 4 0.02
33 45 0.24
34 7 0.04
35 10 0.05
36 46 0.25
37 5 0.03
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.32
Consensus pattern (31 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTCC
Found at i:116596 original size:36 final size:34
Alignment explanation
Indices: 116517--116796 Score: 201
Period size: 36 Copynumber: 8.4 Consensus size: 34
116507 TGGGGATGAA
* * *
116517 TTTT-AAGTCCACGACTCCGTGGCACC---TTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
116547 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * *
116583 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
116617 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * **
116647 TTTCAAAG-TCAGCGACTCTATGGCACC---TT-C
1 TTTTAAAGCCCA-CAACTCCGTGGCACCTTTTTCC
116677 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
*
116714 TTTTAAAGCCCACAACTCCGTGGCACCTTATT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
116747 TTTTTAAGTCCACAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
116782 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
116797 CAAGTCGGTG
Statistics
Matches: 202, Mismatches: 29, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
30 17 0.08
31 51 0.25
32 4 0.02
33 46 0.23
34 6 0.03
35 18 0.09
36 55 0.27
37 5 0.02
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:116755 original size:131 final size:131
Alignment explanation
Indices: 116536--116771 Score: 400
Period size: 131 Copynumber: 1.8 Consensus size: 131
116526 CACGACTCCG
* * *
116536 TGGCACCTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCC
1 TGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACCC
* *
116601 CGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCAGCGACTCT
66 CGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCAGCGACTCT
116666 A
131 A
*
116667 TGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTC
1 TGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACCC
* *
116732 CGTGGCACCTTATTCTTTTTAAGTCCACAACTTCGTGGCA
66 CGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCA
116772 TCTTTCACCC
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 97 1.00
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.32
Consensus pattern (131 bp):
TGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACCC
CGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGTCAGCGACTCT
A
Found at i:116826 original size:33 final size:33
Alignment explanation
Indices: 116780--116949 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
116770 CATCTTTCAC
116780 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
116812 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
116845 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
116878 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
116910 CCATTCTCTAAAGCCCGCGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
116944 CCTTCT
1 CCTTCT
116950 AAGCCCAATA
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
32 6 0.05
33 109 0.92
34 3 0.03
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:117013 original size:49 final size:49
Alignment explanation
Indices: 116949--117496 Score: 566
Period size: 49 Copynumber: 11.7 Consensus size: 49
116939 GCAACCCTTC
* * *
116949 TAAGCCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
116998 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
117042 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
117084 TAAGTCCAATATAACTGGCCTTGAATCAACATC-TTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCA-CATTGGCACCTTCTTCTT
* *
117133 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
117177 -AAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATAT-AGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
117225 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * *
117269 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
117317 TAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
117366 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
** *
117409 TAAGTCCAATATAGCTGGCCTTGAATCAGCATGTTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CTTCTT
* * *
117461 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
117497 ACATCCTTTT
Statistics
Matches: 419, Mismatches: 46, Indels: 65
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 170 0.41
44 4 0.01
45 1 0.00
46 19 0.05
47 1 0.00
48 5 0.01
49 182 0.43
50 1 0.00
52 34 0.08
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
Found at i:117040 original size:21 final size:21
Alignment explanation
Indices: 117016--117083 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
117006 ATGTAGCTGG
117016 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** **
117037 CCTTCAAGTCTAATATCGCTGGC-
1 CCTTGAA-TC-AGCA-CATTGGCA
117060 -CTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
117080 CCTT
1 CCTT
117084 TAAGTCCAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 11 0.34
22 7 0.22
23 2 0.06
24 5 0.16
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:117139 original size:92 final size:92
Alignment explanation
Indices: 116999--117451 Score: 527
Period size: 92 Copynumber: 5.0 Consensus size: 92
116989 CTTCTTCTTT
* * * * *
116999 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATCGCTG
1 AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
*
117058 GCCTTGAATCAGCACATTGGCACCTTT
66 GCCTTGAATCAGCACATTGGCACCTTC
* *
117085 AAGTCCAATATAACTGGCCTTGAATCAACATCTTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
1 AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
117150 GCCTTGAATCAGCACATTGGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
* *
117177 AAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTG
1 AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
*
117242 GCCTTGAATCAGCACATTAGCACCTTC
66 GCCTTGAATCAGCACATTGGCACCTTC
* ** *
117269 AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGT-TCAATGTAGCT
1 AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCT-AATGTAGCT
*
117333 GGCCTTGAATCAGCATATTGGCACCTTCTTC
65 GGCCTTGAATCAGCACATTGGCA-C--CTTC
* * * * * * *
117364 TTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCA----C--CTTTAAGTCCAATATAG
1 ---AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAG
**
117423 CTGGCCTTGAATCAGCATGTTGGCACCTT
63 CTGGCCTTGAATCAGCACATTGGCACCTT
117452 TTCCATCTTT
Statistics
Matches: 325, Mismatches: 28, Indels: 25
0.86 0.07 0.07
Matches are distributed among these distances:
86 33 0.10
87 1 0.00
89 7 0.02
91 1 0.00
92 245 0.75
93 1 0.00
94 1 0.00
95 4 0.01
98 32 0.10
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
AAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTG
GCCTTGAATCAGCACATTGGCACCTTC
Found at i:117175 original size:21 final size:21
Alignment explanation
Indices: 117151--117218 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
117141 ATGTAGCTGG
117151 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
117172 CCTTCAAGTCCAATATCACTGG--
1 CCTTGAA-T-CAGCA-CATTGGCA
*
117194 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCACATTGGCA
117215 CCTT
1 CCTT
117219 CTTCTTTAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 11 0.33
22 7 0.21
23 3 0.09
24 5 0.15
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:117196 original size:135 final size:136
Alignment explanation
Indices: 116937--117451 Score: 513
Period size: 135 Copynumber: 3.8 Consensus size: 136
116927 CGCAAGTCGG
* * *
116937 TGGCAACCCTTCTAAGCCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCTTCTTTAAG
1 TGGC-ACCCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCTTCTTTAAG
* * *
117002 TCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAAT
64 TCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCACTGGCCTTGAAT
117067 CAGCACAT
129 CAGCACAT
* *
117075 TGGCA-CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATCTTGGCACCTTCTTCTTTAAGTC
1 TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCTTCTTTAAGTC
117139 TAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCACTGGCCTTGAATCA
66 TAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCACTGGCCTTGAATCA
*
117204 GCATAT
131 GCACAT
* *
117210 TGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCA-CATTAGCA-C--CTTC--
1 TGGCA-C--C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATC-TTGGCACCTTCTTCTT
* * * * *
117269 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGT-AGC
60 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCA-C
*
117332 TGGCCTTGAATCAGCATAT
118 TGGCCTTGAATCAGCACAT
* * *
117351 TGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCA-CATCGGCA----C--CTT
1 TGGCA-C--C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATC-TTGGCACCTTCTTCTT
* * **
117409 TAAGTCCAATATAGCTGGCCTTGAATCAGCATGTTGGCACCTT
60 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
117452 TTCCATCTTT
Statistics
Matches: 336, Mismatches: 24, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
135 159 0.47
136 5 0.01
137 1 0.00
138 12 0.04
139 1 0.00
140 5 0.01
141 153 0.46
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (136 bp):
TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCTTCTTTAAGTC
TAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCACTGGCCTTGAATCA
GCACAT
Found at i:117346 original size:141 final size:135
Alignment explanation
Indices: 116949--117451 Score: 538
Period size: 141 Copynumber: 3.6 Consensus size: 135
116939 GCAACCCTTC
* * * * * *
116949 TAAGCCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATAGCT
*
117014 GGCCTTGAATCAGCACATTGGCACCTTCAAG-TCTAATATCGCTGGCCTTGAATCAGCACATTGG
60 GGCCTTGAATCAGCACATTGGCACCTTCAAGTTC-AATATAGCTGGCCTTGAATCAGCACATTGG
117078 CA----C--CTT
124 CACCTTCTTCTT
* * * *
117084 TAAGTCCAATATAACTGGCCTTGAATCAACATC-TTGGCACCTTCTTCTTTAAGTCTAATGTAGC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCA-CATTGGCA-C--CTTC---AAGTCTAATATAGC
* *
117148 TGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTG
59 TGGCCTTGAATCAGCACATTGGCACCTTCAAGTTCAATAT-AGCTGGCCTTGAATCAGCACATTG
117212 GCACCTTCTTCTT
123 GCACCTTCTTCTT
* *
117225 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATAGCTGGCCTT
* * *
117290 GAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGC
66 GAATCAGCACATTGGCACC-T--TC---AAGTTCAATATAGCTGGCCTTGAATCAGCACATTGGC
117355 ACCTTCTTCTT
125 ACCTTCTTCTT
* * * *
117366 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCACCTTTAAGTCCAATATAGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATAGCTGGCCTT
**
117431 GAATCAGCATGTTGGCACCTT
66 GAATCAGCACATTGGCACCTT
117452 TTCCATCTTT
Statistics
Matches: 326, Mismatches: 25, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
135 155 0.48
136 2 0.01
138 7 0.02
139 1 0.00
140 4 0.01
141 157 0.48
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (135 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATAGCTGGCCTT
GAATCAGCACATTGGCACCTTCAAGTTCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
TTCTT
Found at i:117452 original size:43 final size:43
Alignment explanation
Indices: 116944--117452 Score: 471
Period size: 43 Copynumber: 11.1 Consensus size: 43
116934 CGGTGGCAAC
* *
116944 CCTTCTAAGCCCAATATAGCTGGCCTTGAATTAGCATATTGGCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
116988 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
117037 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
117080 CCTTTAAGTCCAATATAACTGGCCTTGAATCAACATCTTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
117123 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
117172 CCTTCAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCA
* * *
117215 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
117264 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
117307 CCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
117356 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
117405 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATGTTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
117448 CCTTT
1 CCTTT
117453 TCCATCTTTA
Statistics
Matches: 389, Mismatches: 50, Indels: 49
0.80 0.10 0.10
Matches are distributed among these distances:
43 188 0.48
44 1 0.00
45 4 0.01
47 3 0.01
48 2 0.01
49 188 0.48
50 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:117485 original size:52 final size:55
Alignment explanation
Indices: 117406--117770 Score: 230
Period size: 52 Copynumber: 6.6 Consensus size: 55
117396 ACATCGGCAC
** *
117406 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATGTTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
117458 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
117513 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
117578 AT
54 AT
* * *
117580 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * *
117632 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * *
117685 CTTCAACTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
117740 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCA
117771 ACGTATTGGT
Statistics
Matches: 248, Mismatches: 42, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
52 76 0.31
53 42 0.17
54 9 0.04
55 64 0.26
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 37 0.15
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:117617 original size:67 final size:68
Alignment explanation
Indices: 117509--117635 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
117499 ATCCTTTTTC
* * *
117509 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
117573 TCT
66 TCT
* * * *
117576 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
117636 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:117753 original size:227 final size:228
Alignment explanation
Indices: 117424--117850 Score: 587
Period size: 227 Copynumber: 1.9 Consensus size: 228
117414 CCAATATAGC
** * * * **
117424 TGGCCTTGAATCAGCATGTTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAACTTCAATGTAGCTGACCGTGAATCA
117489 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
* * *
117553 CATCTTTATCACTT-TTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATA
131 CAT-TTTATCA-TTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATA
*
117616 TTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
194 GTGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
117651 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAC-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAACTTC-AATGTAGCTGACCGTGAAT
*
117714 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * * *
117778 GGTCCTTTTATCATTCGTCATCCTCATCATCTTTAAGTCTAGTGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCATTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
117843 AGTGGCAC
193 AGTGGCAC
117851 ATTGCAATGA
Statistics
Matches: 174, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
226 9 0.05
227 116 0.67
228 49 0.28
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAACTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCATTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:118260 original size:31 final size:31
Alignment explanation
Indices: 118211--118425 Score: 171
Period size: 31 Copynumber: 6.6 Consensus size: 31
118201 GATGAATTTT
* *
118211 AAGTCCACGACTCTGTGGCACCTTCTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCTTTTCA
*
118242 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-A
1 AAGTCCACAACTCCGTGGCAC-C---TT--CTTTTCA
* * **
118278 AAGTCCACAACCCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTCTT--TTCA
* *
118311 AAGTCCACGACTCCGTGGCACCTTCCTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCTTTTCA
* * * *
118342 AAGTCCGCGACTCTGTGGCACTTTCTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCTTTTCA
* * **
118373 AAGCCCACAACTCCGTGGCACCTTGTTCTATTT
1 AAGTCCACAACTCCGTGGCACCTTCTT-T-TCA
*
118406 AAGTCCACAACTTCGTGGCA
1 AAGTCCACAACTCCGTGGCA
118426 TCTTTCACCC
Statistics
Matches: 146, Mismatches: 27, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
30 2 0.01
31 68 0.47
32 6 0.04
33 42 0.29
35 3 0.02
36 20 0.14
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.30
Consensus pattern (31 bp):
AAGTCCACAACTCCGTGGCACCTTCTTTTCA
Found at i:118423 original size:95 final size:97
Alignment explanation
Indices: 118207--118425 Score: 268
Period size: 95 Copynumber: 2.2 Consensus size: 97
118197 TGGGGATGAA
*
118207 TTTTAAGTCCACGAC-TCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TTTTAAGTCCACGACTTC-GTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCAC-C-TTTT-
*
118271 CCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
62 CCTTTTAAAGCCCACAACCCCGTGGCACCTTGTTCC
* * * * *
118307 TTTTAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGTCCGCGACTCTGTGGCA-C-TTT-CTT
1 TTTTAAGTCCACGACTTCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACCTTTTCCTT
*
118369 TTCAAAGCCCACAACTCCGTGGCACCTTGTT-C
66 TT-AAAGCCCACAACCCCGTGGCACCTTGTTCC
*
118401 TATTTAAGTCCACAACTTCGTGGCA
1 T-TTTAAGTCCACGACTTCGTGGCA
118426 TCTTTCACCC
Statistics
Matches: 106, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
94 7 0.07
95 47 0.44
96 3 0.03
98 1 0.01
100 47 0.44
101 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.16, T:0.32
Consensus pattern (97 bp):
TTTTAAGTCCACGACTTCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACCTTTTCCTT
TTAAAGCCCACAACCCCGTGGCACCTTGTTCC
Found at i:118480 original size:33 final size:33
Alignment explanation
Indices: 118434--118519 Score: 165
Period size: 33 Copynumber: 2.6 Consensus size: 33
118424 CATCTTTCAC
118434 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
118466 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
118499 CCTTCTCTAAAGCCCACACAA
1 CCTTCTCTAAAGCCCACACAA
118520 ATGGTTTTTC
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 4 0.08
33 49 0.92
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:118745 original size:13 final size:13
Alignment explanation
Indices: 118727--118783 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
118717 CATAAAGTGT
118727 TGTATCGATACAA
1 TGTATCGATACAA
118740 TGTATCGATACATAA
1 TGTATCGATAC--AA
118755 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
*
118772 TGTATCAATACA
1 TGTATCGATACA
118784 TAAGTTTTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 22 0.59
15 2 0.05
17 2 0.05
19 11 0.30
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:118762 original size:32 final size:32
Alignment explanation
Indices: 118707--118804 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
118697 TTCAACGATT
118707 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
118740 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* * *
118772 TGTATCAATACATAAGTTTTGTATTGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
118804 T
1 T
118805 TTAAGCTACT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 49 0.79
33 13 0.21
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:118864 original size:13 final size:13
Alignment explanation
Indices: 118846--118870 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118836 ATTACTCAAA
118846 TGTATCGATACAT
1 TGTATCGATACAT
118859 TGTATCGATACA
1 TGTATCGATACA
118871 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:118901 original size:19 final size:20
Alignment explanation
Indices: 118858--118909 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
118848 TATCGATACA
*
118858 TTGTATCGATACACTGATCT
1 TTGTATCGATACACTAATCT
118878 TTGTATCGATACA-TAAGT-T
1 TTGTATCGATACACTAA-TCT
118897 TTGTATCGATACA
1 TTGTATCGATACA
118910 ATTTAAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACACTAATCT
Found at i:118927 original size:107 final size:107
Alignment explanation
Indices: 118772--118998 Score: 411
Period size: 107 Copynumber: 2.1 Consensus size: 107
118762 ATCGATACAA
* *
118772 TGTATCAATACATAAGTTTTGTATTGATACAATTTAAGCTACTACCAAAAAAATGTATCGATACA
1 TGTATCGATACATAAGTTTTGTATCGATACAATTTAAGCTACTACCAAAAAAATGTATCGATACA
118837 TTACTCAAATGTATCG-ATACATTGTATCGATACACTGATCTT
66 TTACTCAAATGTATCGAAT-CATTGTATCGATACACTGATCTT
*
118879 TGTATCGATACATAAGTTTTGTATCGATACAATTTAAGCTACTGCCAAAAAAATGTATCGATACA
1 TGTATCGATACATAAGTTTTGTATCGATACAATTTAAGCTACTACCAAAAAAATGTATCGATACA
118944 TTACTCAAATGTATCGAATCATTGTATCGATACACTGATCTT
66 TTACTCAAATGTATCGAATCATTGTATCGATACACTGATCTT
118986 TGTATCGATACAT
1 TGTATCGATACAT
118999 GCAGGCAAAT
Statistics
Matches: 116, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
107 114 0.98
108 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (107 bp):
TGTATCGATACATAAGTTTTGTATCGATACAATTTAAGCTACTACCAAAAAAATGTATCGATACA
TTACTCAAATGTATCGAATCATTGTATCGATACACTGATCTT
Found at i:119042 original size:52 final size:52
Alignment explanation
Indices: 118986--119111 Score: 234
Period size: 52 Copynumber: 2.4 Consensus size: 52
118976 CACTGATCTT
*
118986 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
119038 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
119090 TGTATCGATACATGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
119112 ATTTCATATT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:129103 original size:13 final size:13
Alignment explanation
Indices: 129085--129111 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
129075 AGGGTAGCTT
129085 TGTATCGATACAA
1 TGTATCGATACAA
129098 TGTATCGATACAA
1 TGTATCGATACAA
129111 T
1 T
129112 ACTTATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:129121 original size:19 final size:20
Alignment explanation
Indices: 129097--129150 Score: 74
Period size: 19 Copynumber: 2.7 Consensus size: 20
129087 TATCGATACA
129097 ATGTATCGATACAATACT-T
1 ATGTATCGATACAATACTGT
*
129116 ATGTATCGATACATTTACTGT
1 ATGTATCGATACA-ATACTGT
*
129137 TTGTATCGATACAA
1 ATGTATCGATACAA
129151 ATTGTTGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACAATACTGT
Found at i:129994 original size:49 final size:49
Alignment explanation
Indices: 129929--130157 Score: 209
Period size: 49 Copynumber: 4.7 Consensus size: 49
129919 GATGCCAATA
* * *
129929 TGCTGATTCAAGGCCAGTGATTTTGGACATAAAGGTGAAGGTGCTAATG
1 TGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCTAATG
** ** * *
129978 TGCTGATTCAAGGCCAGTGGCATTGGACTTAAAGATGACAAAGGCACCAATT
1 TGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATG---AAGGTGCTAATG
* * *
130030 TGCTGATTCAAGGTCAGCGATATTGGACTTAAAGATGGAGGTGCTAATG
1 TGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCTAATG
* * * * *
130079 TGCTGATTCAAGGCCAGCGACATCGGACTT----A--AAGGTGCCAATA
1 TGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCTAATG
**
130122 TGCTGATTCAAGGCCAACGATATTGGACTTAGAAGA
1 TGCTGATTCAAGGCCAGTGATATTGGACTTA-AAGA
130158 AGATGCCACC
Statistics
Matches: 145, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
43 36 0.25
45 1 0.01
48 1 0.01
49 66 0.46
52 41 0.28
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCTAATG
Found at i:130003 original size:101 final size:100
Alignment explanation
Indices: 129873--130149 Score: 277
Period size: 101 Copynumber: 2.8 Consensus size: 100
129863 GAAAAATGCC
** * * *
129873 AATGTGCTGATTCAAGGCCAGCGAAATTGGGTTTAGGAATG-TTACAGATG-CCAATATGCTGAT
1 AATGTGCTGATTCAAGGCCAGCGAAATTGGACTTA--AA-GATGACAAAGGACCAATATGCTGAT
* * *
129936 TCAAGGCCAGTGATTTTGGACATAAAGGTGAAGGTGCT
63 TCAAGGCCAGCGATATTGGACATAAAGATGAAGGTGCT
* ** *
129974 AATGTGCTGATTCAAGGCCAGTGGCATTGGACTTAAAGATGACAAAGGCACCAATTTGCTGATTC
1 AATGTGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGATGACAAAGG-ACCAATATGCTGATTC
* * *
130039 AAGGTCAGCGATATTGGACTTAAAGATGGAGGTGCT
65 AAGGCCAGCGATATTGGACATAAAGATGAAGGTGCT
* * *
130075 AATGTGCTGATTCAAGGCCAGCGACATCGGACTTAAAG--G-----TG-CCAATATGCTGATTCA
1 AATGTGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGATGACAAAGGACCAATATGCTGATTCA
*
130132 AGGCCAACGATATTGGAC
66 AGGCCAGCGATATTGGAC
130150 TTAGAAGAAG
Statistics
Matches: 151, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
92 31 0.21
94 1 0.01
98 1 0.01
99 9 0.06
101 109 0.72
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (100 bp):
AATGTGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGATGACAAAGGACCAATATGCTGATTCA
AGGCCAGCGATATTGGACATAAAGATGAAGGTGCT
Found at i:130129 original size:43 final size:43
Alignment explanation
Indices: 130068--130152 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
130058 TTAAAGATGG
* * *
130068 AGGTGCTAATGTGCTGATTCAAGGCCAGCGACATCGGACTTAA
1 AGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAA
* *
130111 AGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTA
1 AGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTA
130153 GAAGAAGATG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (43 bp):
AGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAA
Found at i:130321 original size:57 final size:56
Alignment explanation
Indices: 130210--130474 Score: 324
Period size: 57 Copynumber: 4.7 Consensus size: 56
130200 ACTTGTGTGT
** **
130210 TTTTGAAGGTTGCCACTGCCTTGTAAGCTTTG--AAGGTTGCCACTGACTTATGGGC
1 TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTATGGGC
* *
130265 -TTTGAAAAGGTT-CCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC
1 TTTTG--AAGGTTGCCACTAACTTGTGGGC-TTTGAAAAGGTGCCACTGACTTATGGGC
*
130322 TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGC
1 TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGACTTATGGGC
* *** *
130378 GTTTGAAAAAATGCCACTAACTTGTGGCCTTTGAAAAGGGTGCCACTGACTTATGGGC
1 TTTTG-AAGGTTGCCACTAACTTGTGGGCTTTGAAAA-GGTGCCACTGACTTATGGGC
*
130436 TTTTGAAGGTTGCCACTGACTTGTGGGCTTTG-AAAGGTG
1 TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGGTG
130475 AGGAATGTCT
Statistics
Matches: 180, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
54 4 0.02
55 16 0.09
56 48 0.27
57 81 0.45
58 31 0.17
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (56 bp):
TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGACTTATGGGC
Found at i:130351 original size:85 final size:84
Alignment explanation
Indices: 130176--130470 Score: 305
Period size: 85 Copynumber: 3.5 Consensus size: 84
130166 CCAACTTGTG
* * * * * * * * *
130176 TGGGCTTTTGAAAGGGTTGCACCAACTTGTGTGTTTTTG-AAGGTTGCCACTGCCTTGTAAGCTT
1 TGGGCTTTTGAAAAGGTTCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGT-GGCTT
130240 TGAAGGTTGCCACTGACTTA
65 TGAAGGTTGCCACTGACTTA
130260 TGGGC-TTTGAAAAGGTTCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGGGCTTTTGAAAAGGTTCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGT-GGC-T
* *
130324 TTGAAGGTTGCCACTAACTTG
64 TTGAAGGTTGCCACTGACTTA
* * * * * * *
130345 TGGGC-TTTGAAAGGGTGCCACTGACTTATGGGCGTTTGAAAAAATGCCACTAACTTGTGGCCTT
1 TGGGCTTTTGAAAAGGTTCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGG-CTT
*
130409 TGAAAAGGGTGCCACTGACTTA
65 TG--AAGGTTGCCACTGACTTA
*
130431 TGGGCTTTTG--AAGGTTGCCACTGACTTGTGGGC-TTTGAAA
1 TGGGCTTTTGAAAAGGTT-CCACTAACTTGTGGGCTTTTGAAA
130471 GGTGAGGAAT
Statistics
Matches: 179, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
83 28 0.16
84 29 0.16
85 83 0.46
86 35 0.20
87 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.33
Consensus pattern (84 bp):
TGGGCTTTTGAAAAGGTTCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGCTTT
GAAGGTTGCCACTGACTTA
Found at i:130435 original size:114 final size:113
Alignment explanation
Indices: 130210--130472 Score: 395
Period size: 114 Copynumber: 2.3 Consensus size: 113
130200 ACTTGTGTGT
* ** * *
130210 TTTTGAAGGTTGCCACTGCCTTGTAAGCTTTG-AAGGTTGCCACTGACTTATGGGCTTTGAAAAG
1 TTTTGAAGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTGAAAAA
* * * *
130274 GTTCCACTAACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC
66 ATGCCACTAACTTGTGGGCCTTTGAAAAGATGCCACTGACTTATGGGC
*
130322 TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGCGTTTGAAAA
1 TTTTGAAGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGC-TTTGAAAA
*
130387 AATGCCACTAACTTGT-GGCCTTTGAAAAGGGTGCCACTGACTTATGGGC
65 AATGCCACTAACTTGTGGGCCTTTGAAAA-GATGCCACTGACTTATGGGC
130436 TTTTGAAGGTTGCCACTGACTTGTGGGCTTTGAAAGG
1 TTTTGAAGGTTGCCACTGACTTGTGGGCTTTGAAAGG
130473 TGAGGAATGT
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
112 28 0.21
113 33 0.24
114 75 0.55
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (113 bp):
TTTTGAAGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTGAAAAA
ATGCCACTAACTTGTGGGCCTTTGAAAAGATGCCACTGACTTATGGGC
Found at i:130472 original size:28 final size:28
Alignment explanation
Indices: 130174--130473 Score: 288
Period size: 28 Copynumber: 10.6 Consensus size: 28
130164 CACCAACTTG
**
130174 TGTGGGCTTTTGAAAGGGTTG-CACCAACT
1 TGTGGGC-TTTGAAA-GGTTGCCACTGACT
** *
130203 TGTGTGTTTTTG-AAGGTTGCCACTGCCT
1 TGTG-GGCTTTGAAAGGTTGCCACTGACT
**
130231 TGTAAGCTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAGGTTGCCACTGACT
* *
130258 TATGGGCTTTGAAAAGGTT-CCACTAACT
1 TGTGGGCTTTG-AAAGGTTGCCACTGACT
* *
130286 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAGGTTGCCACTGACT
*
130315 TGTGGGCTTTTG-AAGGTTGCCACTAACT
1 TGTGGGC-TTTGAAAGGTTGCCACTGACT
*
130343 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGTTGCCACTGACT
* *** *
130371 TATGGGCGTTTGAAAAAATGCCACTAACT
1 TGTGGGC-TTTGAAAGGTTGCCACTGACT
* *
130400 TGTGGCCTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGTTGCCACTGACT
*
130429 TATGGGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGC-TTTGAAAGGTTGCCACTGACT
130457 TGTGGGCTTTGAAAGGT
1 TGTGGGCTTTGAAAGGT
130474 GAGGAATGTC
Statistics
Matches: 222, Mismatches: 38, Indels: 23
0.78 0.13 0.08
Matches are distributed among these distances:
27 40 0.18
28 99 0.45
29 78 0.35
30 5 0.02
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGTTGCCACTGACT
Found at i:130874 original size:37 final size:37
Alignment explanation
Indices: 130832--130916 Score: 170
Period size: 37 Copynumber: 2.3 Consensus size: 37
130822 AAAGATGAAG
130832 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
1 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
130869 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
1 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
130906 CACAAATGCAT
1 CACAAATGCAT
130917 GATTGTAGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (37 bp):
CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
Found at i:131981 original size:8 final size:8
Alignment explanation
Indices: 131961--132006 Score: 58
Period size: 8 Copynumber: 5.6 Consensus size: 8
131951 ATCCGGACCC
131961 TTTTTATT
1 TTTTTATT
131969 ATTTTT-TT
1 -TTTTTATT
*
131977 CTTTTTGTT
1 -TTTTTATT
131986 TTTTTATT
1 TTTTTATT
131994 TTTTTATT
1 TTTTTATT
132002 TTTTT
1 TTTTT
132007 TGTCTCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
8 27 0.79
9 7 0.21
ACGTcount: A:0.09, C:0.02, G:0.02, T:0.87
Consensus pattern (8 bp):
TTTTTATT
Found at i:131987 original size:22 final size:22
Alignment explanation
Indices: 131962--132004 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
131952 TCCGGACCCT
*
131962 TTTTATTATTTTTTTCTTTTTG
1 TTTTATTATTTTTTTATTTTTG
*
131984 TTTTTTTATTTTTTTATTTTT
1 TTTTATTATTTTTTTATTTTT
132005 TTTGTCTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.02, G:0.02, T:0.86
Consensus pattern (22 bp):
TTTTATTATTTTTTTATTTTTG
Found at i:131989 original size:25 final size:25
Alignment explanation
Indices: 131961--132009 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
131951 ATCCGGACCC
131961 TTTTTATTATTTTT-TTCTTTTTGTT
1 TTTTTATT-TTTTTATTCTTTTTGTT
*
131986 TTTTTATTTTTTTATTTTTTTTGT
1 TTTTTATTTTTTTATTCTTTTTGT
132010 CTCTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.08, C:0.02, G:0.04, T:0.86
Consensus pattern (25 bp):
TTTTTATTTTTTTATTCTTTTTGTT
Found at i:135615 original size:52 final size:52
Alignment explanation
Indices: 135530--135706 Score: 327
Period size: 52 Copynumber: 3.4 Consensus size: 52
135520 ATATGAAAAG
* * *
135530 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
135582 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
135634 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
135686 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
135707 AAGATCAGTG
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 122 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
Found at i:135719 original size:104 final size:104
Alignment explanation
Indices: 135530--135726 Score: 315
Period size: 104 Copynumber: 1.9 Consensus size: 104
135520 ATATGAAAAG
* *
135530 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
***
135595 TCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
66 TCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
*
135634 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
*
135699 TCGATACA-AAGATCAGTGTATCGATACA
66 TCGATACATAAGAT-AATGTATCGATACA
135727 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
103 2 0.02
104 83 0.98
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (104 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
TCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
Done.