Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1654
Parameters: 2 7 7 80 10 50 1000
Length:  42614

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1567--1637
28
2.5
28
88
0
97
23
18
35
22
1.96
1646--1748
53
1.9
54
92
2
172
36
9
23
30
1.87
4110--4135
13
2.0
13
100
0
52
38
15
15
30
1.88
4175--4274
19
5.9
18
71
26
94
38
15
13
34
1.85
4179--4272
32
2.9
32
96
0
170
37
15
13
32
1.88
4229--4253
13
1.9
13
100
0
50
32
16
16
36
1.90
4330--4407
21
3.7
21
96
0
138
38
19
10
32
1.85
11798--11859
16
3.9
16
75
8
63
32
3
8
56
1.44
12073--12112
18
2.2
18
90
0
62
50
0
2
47
1.14
13044--13069
13
2.0
13
100
0
52
38
15
15
30
1.88
13022--13089
33
2.1
32
94
2
118
32
16
14
36
1.89
13169--13193
13
1.9
13
100
0
50
36
16
16
32
1.90
13203--13243
20
2.0
20
95
0
73
29
12
24
34
1.91
15670--15694
13
1.9
13
100
0
50
32
20
16
32
1.94
21868--21919
20
2.7
20
91
8
81
28
15
17
38
1.90
22000--22024
13
1.9
13
100
0
50
36
16
16
32
1.90
21983--22045
33
1.9
32
87
3
90
30
15
20
33
1.94
25995--26044
26
1.9
26
87
0
73
38
2
0
60
1.09
26025--26053
15
1.9
15
100
0
58
48
3
0
48
1.18
26014--26099
35
2.4
36
83
11
97
43
3
0
53
1.18
29576--29627
22
2.4
21
81
9
68
75
0
0
25
0.81
29967--30034
28
2.4
28
90
0
109
44
22
22
11
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30867--30937
15
5.4
13
84
15
69
76
0
0
23
0.79
30880--30928
3
16.7
3
91
4
82
71
0
0
28
0.86
31610--31638
13
2.1
14
93
6
51
79
0
0
20
0.74

Tables:   1

The End!