Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1656
Parameters: 2 7 7 80 10 50 1000
Length:  116196

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
641--670
15
1.9
16
93
6
53
6
13
3
76
1.11
8342--8403
23
2.7
23
89
0
88
20
12
20
45
1.84
9502--9529
2
14.0
2
100
0
56
50
0
0
50
1.00
18030--18060
2
15.5
2
93
0
53
51
0
0
48
1.00
25315--25360
23
2.0
23
100
0
92
30
17
17
34
1.93
26031--26062
13
2.5
13
94
0
55
75
3
9
12
1.16
30650--30681
10
3.2
10
90
0
55
34
12
0
53
1.39
30804--30955
76
2.0
76
85
1
207
39
13
4
42
1.65
30879--31089
95
2.2
95
84
7
259
40
10
6
43
1.64
31508--31545
2
19.5
2
94
5
69
47
0
0
52
1.00
32374--32421
13
3.5
13
76
18
53
29
2
2
66
1.14
34368--34418
24
2.1
24
82
7
59
58
1
0
39
1.09
34391--34452
32
2.0
29
84
9
79
64
0
0
35
0.94
34404--34451
19
2.6
19
87
9
64
66
0
0
33
0.92
34413--34451
18
2.2
17
83
16
53
66
0
0
33
0.92
35269--35379
55
2.1
54
81
6
127
45
2
0
51
1.21
35653--35723
31
2.3
31
100
0
142
22
23
23
29
1.99
35830--35871
22
1.9
22
90
0
66
42
0
2
54
1.13
36079--36141
25
2.6
24
80
12
74
41
0
3
55
1.16
36587--36617
16
1.9
16
93
0
53
22
3
6
67
1.28
36628--36733
35
3.0
34
72
18
83
35
0
4
59
1.18
36692--36746
22
2.7
20
78
15
58
27
0
3
69
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36628--36748
18
6.6
18
66
20
63
34
0
4
61
1.15
37818--37902
24
3.5
24
75
20
79
42
1
0
56
1.07
43432--43473
22
1.9
22
85
9
59
61
2
0
35
1.09
45374--45430
22
2.6
22
84
13
73
63
0
0
36
0.95
45536--45579
20
2.2
20
100
0
88
36
13
0
50
1.42
51208--51241
3
11.7
3
93
6
61
29
0
0
70
0.87
51211--51258
9
5.6
8
85
7
51
27
0
2
70
0.98
51794--52060
142
1.9
141
89
2
419
28
15
20
35
1.93
54094--54121
2
14.0
2
100
0
56
50
0
0
50
1.00
55160--55202
3
14.3
3
100
0
86
32
0
0
67
0.91
56062--56168
37
2.8
36
76
10
99
37
23
15
23
1.93
56141--56288
31
4.8
31
80
0
161
33
22
15
28
1.95
61780--61894
38
3.1
36
82
9
124
33
19
20
26
1.96
61865--62003
30
4.6
30
78
6
127
31
23
15
29
1.95
61865--62016
61
2.5
61
81
0
169
30
23
17
28
1.97
65633--65711
32
2.5
32
87
0
122
40
7
15
36
1.75
66794--66836
17
2.6
16
92
7
68
20
2
0
76
0.89
67634--67683
14
3.3
15
83
10
50
40
0
0
60
0.97
73039--73076
2
19.5
2
94
5
69
52
0
0
47
1.00
73893--73942
24
2.2
23
76
13
59
48
0
6
46
1.27
75188--75480
148
2.0
148
93
1
507
33
12
13
40
1.82
75763--75792
3
10.0
3
100
0
60
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77127--77183
29
2.0
29
83
13
73
31
3
10
54
1.51
78945--78984
15
2.7
16
85
11
50
52
2
2
42
1.28
80204--80269
19
3.3
19
72
24
64
31
3
1
63
1.19
80197--80283
41
2.1
41
85
8
115
33
2
1
63
1.15
80204--80268
17
4.0
17
69
22
50
32
3
1
63
1.19
80208--80287
41
1.9
42
90
7
128
31
2
1
65
1.14
82966--82996
13
2.4
13
94
0
53
54
0
3
41
1.16
83403--83446
19
2.5
19
85
10
58
45
2
0
52
1.13
88223--88272
25
2.0
25
96
0
91
28
10
20
42
1.84
95407--95485
32
2.5
32
87
0
122
40
7
15
36
1.75
96562--96604
17
2.6
16
88
7
59
23
2
0
74
0.93
98560--98608
22
2.3
22
82
13
66
36
6
0
57
1.24
98633--98657
13
1.9
13
100
0
50
56
0
0
44
0.99
105103--105395
148
2.0
148
93
1
507
33
12
13
40
1.82
105678--105707
3
10.0
3
100
0
60
33
0
0
66
0.92
107041--107097
29
2.0
29
83
13
73
31
3
10
54
1.51
108860--108899
15
2.7
16
85
11
50
52
2
2
42
1.28
110118--110183
19
3.3
19
72
24
64
31
3
1
63
1.19
110111--110197
41
2.1
41
85
8
115
33
2
1
63
1.15
110118--110182
17
4.0
17
69
22
50
32
3
1
63
1.19
110122--110201
41
1.9
42
90
7
128
31
2
1
65
1.14
112875--112905
13
2.4
13
94
0
53
54
0
3
41
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113310--113354
19
2.5
19
86
10
60
44
2
0
53
1.13

Tables:   1

The End!