genome.fa.s1659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1659
Parameters: 2 7 7 80 10 50 1000
Length:  75837

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
819--863	21	2.1	21	84	8	56	22	20	4	53	1.63
3133--3249	21	5.7	21	79	4	148	29	18	11	40	1.87
3153--3267	20	5.7	20	79	4	140	30	20	13	36	1.90
3133--3267	41	3.3	41	100	0	270	29	19	12	38	1.88
5043--5074	11	2.8	12	86	13	50	65	6	6	21	1.38
24561--24624	33	2.0	32	87	3	92	29	14	17	39	1.88
24666--24718	20	2.6	21	76	8	56	32	15	15	37	1.88
25286--25330	22	2.0	22	87	8	65	33	28	0	37	1.58
27070--27116	23	2.0	24	84	12	62	61	19	4	14	1.49
30203--30228	13	2.0	13	100	0	52	30	15	15	38	1.88
33889--34003	52	2.2	52	84	1	142	44	9	13	33	1.76
34041--34092	20	2.5	21	81	3	61	28	15	15	40	1.88
36657--36691	2	17.5	2	100	0	70	48	0	0	51	1.00
37787--37828	22	1.9	22	85	9	59	52	30	7	9	1.61
39914--39961	23	2.3	21	86	13	64	10	18	0	70	1.15
43774--43800	13	2.1	13	100	0	54	37	14	14	33	1.88
43841--43865	13	1.9	13	100	0	50	32	16	16	36	1.90
43854--43992	52	2.7	53	83	5	160	32	19	15	32	1.93
43874--43992	52	2.3	51	89	4	177	33	19	15	31	1.93
52261--52285	13	1.9	13	100	0	50	36	16	16	32	1.90
52274--52336	19	3.6	19	66	24	57	30	12	11	46	1.77
52260--52338	32	2.5	32	93	4	133	31	12	11	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53317--53342	13	2.0	13	100	0	52	30	15	15	38	1.88
55889--55927	13	3.0	13	100	0	78	38	15	15	30	1.88
55913--55991	20	3.7	20	76	15	77	44	15	13	26	1.84
58000--58030	15	2.1	15	93	0	53	12	22	16	48	1.80
59834--59878	21	2.1	21	84	8	56	22	20	4	53	1.63
62098--62123	13	2.0	13	100	0	52	30	15	15	38	1.88
73160--73231	28	2.6	28	88	0	99	23	19	34	22	1.96
73220--73389	52	3.3	51	77	11	157	32	12	24	30	1.93
73153--73558	212	1.9	212	87	3	593	31	13	26	28	1.94

Tables:   1

The End!