Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold166
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2719372
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 17868 characters in sequence are not A, C, G, or T
File 13 of 18
Found at i:2225960 original size:52 final size:52
Alignment explanation
Indices: 2225882--2226009 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
2225872 CGAAATATGA
*
2225882 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
2225934 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
2225986 AAA-TTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
2226010 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 21 0.28
52 48 0.65
53 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:2226036 original size:13 final size:13
Alignment explanation
Indices: 2226018--2226042 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2226008 CAAAGATCAG
2226018 TGTATCGATACAA
1 TGTATCGATACAA
2226031 TGTATCGATACA
1 TGTATCGATACA
2226043 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2226120 original size:33 final size:33
Alignment explanation
Indices: 2226083--2226149 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2226073 AGTAGCTTAA
2226083 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
2226116 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
2226149 A
1 A
2226150 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:2226123 original size:13 final size:13
Alignment explanation
Indices: 2226105--2226129 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2226095 CAAAAAAATA
2226105 TGTATCGATACAT
1 TGTATCGATACAT
2226118 TGTATCGATACA
1 TGTATCGATACA
2226130 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2226494 original size:28 final size:28
Alignment explanation
Indices: 2226454--2226665 Score: 298
Period size: 28 Copynumber: 7.4 Consensus size: 28
2226444 AGTGTCTACA
*
2226454 GTGGGCTTTGAAAGGATGCCATTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
*
2226482 GTGGGCTTTGAAAGGATGCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* * *
2226510 GTGGGCTTTGAAAAGAGTTACCACCGACTCGT
1 GTGGGCTTTG-AAAG-GATGCCACTGACT--T
*
2226542 GTGGGCTTTGAAAGGGTGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
*
2226570 GTGGGCTTTGAAAGAATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
*
2226598 GTGGGCTTTGAAAGGATGCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* *
2226626 GTGGGCTTTGAAAGGAAGCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
2226654 GTGGGCTTTGAA
1 GTGGGCTTTGAA
2226666 TGAGGAGTTT
Statistics
Matches: 166, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
28 128 0.77
29 4 0.02
30 19 0.11
31 4 0.02
32 11 0.07
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
GTGGGCTTTGAAAGGATGCCACTGACTT
Found at i:2231100 original size:32 final size:36
Alignment explanation
Indices: 2231026--2231103 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 36
2231016 TAAGAGGTTA
**
2231026 TATCTTAGCCTTTGAAAAAGATAGGGAGAGAGATTC
1 TATCTTAGCCCGTGAAAAAGATAGGGAGAGAGATTC
*
2231062 TATCTTAGCCCGT-AAAAAGATA-GG-GAG-GTTTC
1 TATCTTAGCCCGTGAAAAAGATAGGGAGAGAGATTC
2231094 TATCTTAGCC
1 TATCTTAGCC
2231104 TTAAAAGAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
32 14 0.36
33 3 0.08
34 2 0.05
35 9 0.23
36 11 0.28
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.29
Consensus pattern (36 bp):
TATCTTAGCCCGTGAAAAAGATAGGGAGAGAGATTC
Found at i:2234282 original size:13 final size:13
Alignment explanation
Indices: 2234264--2234288 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2234254 CAAAGATCAG
2234264 TGTATCGATACAA
1 TGTATCGATACAA
2234277 TGTATCGATACA
1 TGTATCGATACA
2234289 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2234369 original size:13 final size:13
Alignment explanation
Indices: 2234351--2234375 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2234341 CAAAAAAATA
2234351 TGTATCGATACAT
1 TGTATCGATACAT
2234364 TGTATCGATACA
1 TGTATCGATACA
2234376 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2235476 original size:16 final size:16
Alignment explanation
Indices: 2235455--2235486 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
2235445 CAGATTAATT
2235455 ATTCGGATCATTTCGA
1 ATTCGGATCATTTCGA
2235471 ATTCGGATCATTTCGA
1 ATTCGGATCATTTCGA
2235487 GTTCAAATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (16 bp):
ATTCGGATCATTTCGA
Found at i:2235598 original size:20 final size:21
Alignment explanation
Indices: 2235553--2235598 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
2235543 AGTTCAAATG
**
2235553 TAAATTAATTAATTAAAATTTT
1 TAAATTAA-TAATTAAAATTAA
2235575 TAAATTAA-AATTAAAATTAA
1 TAAATTAATAATTAAAATTAA
2235595 TAAA
1 TAAA
2235599 CCTAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
22 8 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAATTAATAATTAAAATTAA
Found at i:2236388 original size:14 final size:14
Alignment explanation
Indices: 2236369--2236399 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
2236359 TTGCAGTGCT
2236369 TATATATATGTATG
1 TATATATATGTATG
*
2236383 TATATATATTTATG
1 TATATATATGTATG
2236397 TAT
1 TAT
2236400 TAATTCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TATATATATGTATG
Found at i:2238174 original size:13 final size:13
Alignment explanation
Indices: 2238156--2238181 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2238146 CAATTTTTTG
2238156 TGTATCGATACAT
1 TGTATCGATACAT
2238169 TGTATCGATACAT
1 TGTATCGATACAT
2238182 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2239219 original size:20 final size:20
Alignment explanation
Indices: 2239150--2239222 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
2239140 CTTCAAATAA
*
2239150 AATTGAATATATAAAACTAT
1 AATTGAATATATATAACTAT
* *
2239170 AAATAAATATTCATATAACTAT
1 AATTGAATA-T-ATATAACTAT
** *
2239192 AACCGAATATATATAACTTT
1 AATTGAATATATATAACTAT
2239212 AATTGAATATA
1 AATTGAATATA
2239223 AATATGATCA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
20 25 0.60
21 2 0.05
22 15 0.36
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.36
Consensus pattern (20 bp):
AATTGAATATATATAACTAT
Found at i:2239329 original size:105 final size:105
Alignment explanation
Indices: 2239212--2239439 Score: 282
Period size: 105 Copynumber: 2.2 Consensus size: 105
2239202 ATATAACTTT
*
2239212 AATTGAATATAAATATGATCATAACTGA-ATGTACATATAACTAAAAATAATATTTTT-AGTTTA
1 AATTGAATATAAATATGATCATAACT-ATATGTACATATAACTAAAAATAATATTTTTGA-CTTA
* **
2239275 AAGAGTT-AGTTATTTTCATAGAGGGTTGATTCCTTCGAATAA
64 AAGAGTTGA-TTATTTTCATAGAGAGTTGATTCCTTAAAATAA
* * * * *
2239317 AATTAAATATAAATATAATTATAACTATATGTGCATATAACTGAAAATAATATTTTTGACTTAAA
1 AATTGAATATAAATATGATCATAACTATATGTACATATAACTAAAAATAATATTTTTGACTTAAA
* * * *
2239382 GAGTTGATTCTTTTCATGGAGAGTTGGTTTCTTAAAATAA
66 GAGTTGATTATTTTCATAGAGAGTTGATTCCTTAAAATAA
*
2239422 AATTGAATATATATATGA
1 AATTGAATATAAATATGA
2239440 CAATAACAGG
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
104 1 0.01
105 101 0.97
106 2 0.02
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.39
Consensus pattern (105 bp):
AATTGAATATAAATATGATCATAACTATATGTACATATAACTAAAAATAATATTTTTGACTTAAA
GAGTTGATTATTTTCATAGAGAGTTGATTCCTTAAAATAA
Found at i:2239659 original size:20 final size:22
Alignment explanation
Indices: 2239610--2239664 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
2239600 GAATAAAATT
* *
2239610 GAATGTATATATTATTATAATC
1 GAATATATATAATATTATAATC
2239632 GAATATATATAATATTATAA-C
1 GAATATATATAATATTATAATC
*
2239653 TAAATATATATA
1 -GAATATATATA
2239665 TATGACTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (22 bp):
GAATATATATAATATTATAATC
Found at i:2239816 original size:22 final size:22
Alignment explanation
Indices: 2239765--2239810 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
2239755 AAATTAAACT
*
2239765 TACATATGACTATAACTAAATA
1 TACATATAACTATAACTAAATA
2239787 TACATATAACTATAAC-AATATA
1 TACATATAACTATAACTAA-ATA
2239809 TA
1 TA
2239811 TTTATATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (22 bp):
TACATATAACTATAACTAAATA
Found at i:2240217 original size:20 final size:20
Alignment explanation
Indices: 2240194--2240232 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
2240184 TAATTATGAG
2240194 ATTTAATATAAAATATTTTA
1 ATTTAATATAAAATATTTTA
2240214 ATTTAATATAAAATATTTT
1 ATTTAATATAAAATATTTT
2240233 TTTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTAATATAAAATATTTTA
Found at i:2240330 original size:53 final size:50
Alignment explanation
Indices: 2240213--2240353 Score: 140
Period size: 54 Copynumber: 2.6 Consensus size: 50
2240203 AAAATATTTT
* * *
2240213 AATTTAATATAAAATATTTTTTTTATTTTTTATTATTTTTAAATAGTTATAAG
1 AATTTAATATAAAATA---TTTTTAATTTTTATTATTTTTAAATAATAATAAG
2240266 ATATTTAATATAAAATACTTTTTAATTGTTTATTAGTTTTTAAATAATAATTCAAG
1 A-ATTTAATATAAAATA-TTTTTAATT-TTTATTA-TTTTTAAATAATAA-T-AAG
*
2240322 -ATTTATATACAAAATATTTTTAATCTTTTATT
1 AATTTA-ATATAAAATATTTTTAAT-TTTTATT
2240354 TAATAATTTA
Statistics
Matches: 76, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
52 8 0.11
53 8 0.11
54 46 0.61
55 11 0.14
56 3 0.04
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.55
Consensus pattern (50 bp):
AATTTAATATAAAATATTTTTAATTTTTATTATTTTTAAATAATAATAAG
Found at i:2240373 original size:2 final size:2
Alignment explanation
Indices: 2240362--2240399 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
2240352 TTTAATAATT
*
2240362 TA TA TA -A TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2240400 TTGGGATTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2243183 original size:70 final size:70
Alignment explanation
Indices: 2243061--2243191 Score: 190
Period size: 70 Copynumber: 1.9 Consensus size: 70
2243051 AAATTGGCAG
* * * * *
2243061 CATCGAAATTTACCTTAGCGATGCCTTCCCTCGGTAGCTTCCAAGTAGAATTAACAGGAGGCCTG
1 CATCAAAATTTACCTTAGCAATACCGTCCCTCGGTAGCTTCCAAGTAAAATTAACAGGAGGCCTG
2243126 TCTGC
66 TCTGC
* * *
2243131 CATCAAAATTTACCTTAGCAATACCGTCCCTCGGTGGCTTCCCAGTAAAATTAACTGGAGG
1 CATCAAAATTTACCTTAGCAATACCGTCCCTCGGTAGCTTCCAAGTAAAATTAACAGGAGG
2243192 TTTGTTCTCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (70 bp):
CATCAAAATTTACCTTAGCAATACCGTCCCTCGGTAGCTTCCAAGTAAAATTAACAGGAGGCCTG
TCTGC
Found at i:2245011 original size:21 final size:21
Alignment explanation
Indices: 2244985--2245033 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
2244975 AAATGTATTG
2244985 ATACATTTACTAT-TTATATCA
1 ATACATTTA-TATATTATATCA
* *
2245006 ATACA-TTATTTATTGTATCA
1 ATACATTTATATATTATATCA
2245026 ATACATTT
1 ATACATTT
2245034 TGGATTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 15 0.62
21 7 0.29
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (21 bp):
ATACATTTATATATTATATCA
Found at i:2246005 original size:20 final size:20
Alignment explanation
Indices: 2245982--2246054 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2245972 ACAATTCAAA
2245982 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2246002 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2246023 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2246043 GTATCGATACAT
1 GTATCGATACAT
2246055 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2246026 original size:21 final size:21
Alignment explanation
Indices: 2246000--2246075 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2245990 ACATGTTGCA
2246000 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2246021 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2246041 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
2246062 TTGTATCGATACAT
1 ATGTATCGATACAT
2246076 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2246028 original size:41 final size:41
Alignment explanation
Indices: 2245982--2246075 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2245972 ACAATTCAAA
*
2245982 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
2246023 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2246064 GTATCGATACAT
1 GTATCGATACAT
2246076 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2246132 original size:13 final size:13
Alignment explanation
Indices: 2246114--2246139 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2246104 TACAGCAAGT
2246114 ATGTATCGATACA
1 ATGTATCGATACA
2246127 ATGTATCGATACA
1 ATGTATCGATACA
2246140 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2250218 original size:15 final size:15
Alignment explanation
Indices: 2250198--2250228 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2250188 TAAAAATGTC
*
2250198 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2250213 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2250228 C
1 C
2250229 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2252321 original size:20 final size:21
Alignment explanation
Indices: 2252242--2252320 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
2252232 AATGTCCAAA
*
2252242 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
2252262 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
2252287 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
2252307 TTGTATCGATACAT
1 ATGTATCGATACAT
2252321 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:2252325 original size:13 final size:13
Alignment explanation
Indices: 2252307--2252345 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2252297 ACATTTTTCT
2252307 TTGTATCGATACA
1 TTGTATCGATACA
2252320 TTGTATCGATACA
1 TTGTATCGATACA
*
2252333 CTGTATCGATACA
1 TTGTATCGATACA
2252346 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2254285 original size:8 final size:8
Alignment explanation
Indices: 2254272--2254301 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
2254262 GTAAAATTTA
2254272 TTTTTATT
1 TTTTTATT
2254280 TTTTTATT
1 TTTTTATT
2254288 TTTATTATT
1 TTT-TTATT
2254297 TTTTT
1 TTTTT
2254302 TAAGGGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTATT
Found at i:2254287 original size:14 final size:15
Alignment explanation
Indices: 2254268--2254299 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
2254258 ATTCGTAAAA
2254268 TTTATTTTTATT-TT
1 TTTATTTTTATTATT
2254282 TTTATTTTTATTATT
1 TTTATTTTTATTATT
2254297 TTT
1 TTT
2254300 TTTAAGGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTATTTTTATTATT
Found at i:2254861 original size:20 final size:20
Alignment explanation
Indices: 2254838--2254910 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2254828 ACAATTCAAA
2254838 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2254858 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2254879 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2254899 GTATCGATACAT
1 GTATCGATACAT
2254911 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2254882 original size:21 final size:21
Alignment explanation
Indices: 2254856--2254931 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2254846 ACATGTTGCA
2254856 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2254877 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2254897 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
2254918 TTGTATCGATACAT
1 ATGTATCGATACAT
2254932 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2254889 original size:41 final size:41
Alignment explanation
Indices: 2254838--2254931 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2254828 ACAATTCAAA
*
2254838 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
2254879 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2254920 GTATCGATACAT
1 GTATCGATACAT
2254932 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2254988 original size:13 final size:13
Alignment explanation
Indices: 2254970--2254995 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2254960 TACAGCAAGT
2254970 ATGTATCGATACA
1 ATGTATCGATACA
2254983 ATGTATCGATACA
1 ATGTATCGATACA
2254996 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2257155 original size:13 final size:13
Alignment explanation
Indices: 2257137--2257162 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2257127 TACAGCAAGT
2257137 ATGTATCGATACA
1 ATGTATCGATACA
2257150 ATGTATCGATACA
1 ATGTATCGATACA
2257163 TGAAAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2257160 original size:86 final size:86
Alignment explanation
Indices: 2257062--2257235 Score: 348
Period size: 86 Copynumber: 2.0 Consensus size: 86
2257052 ATACATGTTG
2257062 CAATGTATCGATACATGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACATGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
2257127 TACAGCAAGTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
2257148 CAATGTATCGATACATGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACATGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
2257213 TACAGCAAGTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
2257234 CA
1 CA
2257236 CAAAAAATTG
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (86 bp):
CAATGTATCGATACATGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
TACAGCAAGTATGTATCGATA
Found at i:2259483 original size:21 final size:21
Alignment explanation
Indices: 2259450--2259494 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2259440 TTGCAAGTTG
*
2259450 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
2259472 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
2259492 AAA
1 AAA
2259495 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:2261318 original size:15 final size:15
Alignment explanation
Indices: 2261298--2261328 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2261288 TAAAAATGTC
*
2261298 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2261313 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2261328 C
1 C
2261329 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2264704 original size:19 final size:20
Alignment explanation
Indices: 2264652--2264705 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
2264642 CTGCCAGTTT
**
2264652 CATGTATCGATACAATTGTG
1 CATGTATCGATACAATTGAA
*
2264672 CATGTTTCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
*
2264691 CATGTATCGGTACAA
1 CATGTATCGATACAA
2264706 AGCATAATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2268810 original size:20 final size:20
Alignment explanation
Indices: 2268785--2268838 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
2268775 GTTAGAAGCA
* *
2268785 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATGTACC
2268805 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
2268825 ATGTATCGATACAA
1 ATGTATCGATACAA
2268839 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:2268892 original size:20 final size:20
Alignment explanation
Indices: 2268867--2268926 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
2268857 CTACCAGTTT
2268867 CATGTATCGATACAATTATC
1 CATGTATCGATACAATTATC
* *
2268887 CATGTATCGATATAATGAT-
1 CATGTATCGATACAATTATC
*
2268906 CATGTACCGATACAATATATC
1 CATGTATCGATACAAT-TATC
2268927 GATACAAAGC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
19 14 0.42
20 19 0.58
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTATC
Found at i:2269594 original size:44 final size:47
Alignment explanation
Indices: 2269546--2269645 Score: 134
Period size: 48 Copynumber: 2.2 Consensus size: 47
2269536 TAAAAGAGAT
2269546 TTTCTCCCTCTAGAT-AAA-AAAA-TTATTTTATTTTCAAAGCAATA
1 TTTCTCCCTCTAGATCAAACAAAATTTATTTTATTTTCAAAGCAATA
*** *
2269590 TTTCTCCCTCTTTTTCAAAGCAAAATTTATTTTATTTTCAAAGCAATG
1 TTTCTCCCTCTAGATCAAA-CAAAATTTATTTTATTTTCAAAGCAATA
2269638 TTTCTCCC
1 TTTCTCCC
2269646 CTTTTTTGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 12 0.25
45 3 0.06
47 4 0.08
48 29 0.60
ACGTcount: A:0.31, C:0.20, G:0.05, T:0.44
Consensus pattern (47 bp):
TTTCTCCCTCTAGATCAAACAAAATTTATTTTATTTTCAAAGCAATA
Found at i:2269609 original size:25 final size:25
Alignment explanation
Indices: 2269576--2269651 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
2269566 AATTATTTTA
2269576 TTTTCAAAGCAATATTTCTCCCTCT
1 TTTTCAAAGCAATATTTCTCCCTCT
* * *
2269601 TTTTCAAAGCAAAATTTAT---TTT
1 TTTTCAAAGCAATATTTCTCCCTCT
*
2269623 ATTTTCAAAGCAATGTTTCTCCC-CT
1 -TTTTCAAAGCAATATTTCTCCCTCT
2269648 TTTT
1 TTTT
2269652 TGTTATAGCA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
22 2 0.05
23 16 0.40
24 4 0.10
25 18 0.45
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.47
Consensus pattern (25 bp):
TTTTCAAAGCAATATTTCTCCCTCT
Found at i:2269650 original size:23 final size:23
Alignment explanation
Indices: 2269576--2269650 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
2269566 AATTATTTTA
2269576 TTTTCAAAGCAATATTTCTCCCTC
1 TTTTCAAAGCAATATTTCTCCC-C
* * ****
2269600 TTTTTCAAAGCAAAATTTATTTTA
1 -TTTTCAAAGCAATATTTCTCCCC
*
2269624 TTTTCAAAGCAATGTTTCTCCCC
1 TTTTCAAAGCAATATTTCTCCCC
2269647 TTTT
1 TTTT
2269651 TTGTTATAGC
Statistics
Matches: 37, Mismatches: 13, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
23 20 0.54
25 17 0.46
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.47
Consensus pattern (23 bp):
TTTTCAAAGCAATATTTCTCCCC
Found at i:2273169 original size:21 final size:21
Alignment explanation
Indices: 2273136--2273176 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2273126 CTAAGTAAAA
2273136 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
2273157 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
2273177 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:2273241 original size:20 final size:19
Alignment explanation
Indices: 2273216--2273286 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
2273206 ACCCTGAAAA
2273216 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* * **
2273236 GTATCGGTACAAATTGCAT
1 GTATCGATACACATTAAAT
**
2273255 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
2273276 GTATCGATACA
1 GTATCGATACA
2273287 GGACATTGGC
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
19 4 0.10
20 33 0.85
21 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:2273382 original size:10 final size:10
Alignment explanation
Indices: 2273363--2273393 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
2273353 AATCTCATTT
2273363 TCACTGTTCA
1 TCACTGTTCA
*
2273373 TCACTATTCA
1 TCACTGTTCA
2273383 TCACTGTTCA
1 TCACTGTTCA
2273393 T
1 T
2273394 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:2273415 original size:21 final size:22
Alignment explanation
Indices: 2273381--2273436 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
2273371 CATCACTATT
2273381 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
2273403 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
2273424 CATCACTGTTCAT
1 CATCACTGTTCAT
2273437 ACTGTTCACG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.38
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:2273530 original size:13 final size:13
Alignment explanation
Indices: 2273512--2273537 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2273502 ACATATTTGT
2273512 GTGTATCGATACA
1 GTGTATCGATACA
2273525 GTGTATCGATACA
1 GTGTATCGATACA
2273538 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:2274079 original size:34 final size:35
Alignment explanation
Indices: 2274016--2274082 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2274006 CTAAGTGATT
2274016 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
2274052 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
2274083 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:2279764 original size:15 final size:15
Alignment explanation
Indices: 2279746--2279782 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
2279736 TTCGAGTCAA
2279746 CATCATCATTATCAT
1 CATCATCATTATCAT
*
2279761 CATCATCATTATCTT
1 CATCATCATTATCAT
2279776 CATCATC
1 CATCATC
2279783 TTTGATGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (15 bp):
CATCATCATTATCAT
Found at i:2281404 original size:13 final size:13
Alignment explanation
Indices: 2281386--2281415 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2281376 ACAATTCTTC
*
2281386 ATGTATCGATACA
1 ATGTATCAATACA
2281399 ATGTATCAATACA
1 ATGTATCAATACA
2281412 ATGT
1 ATGT
2281416 GTCATGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (13 bp):
ATGTATCAATACA
Found at i:2282937 original size:20 final size:21
Alignment explanation
Indices: 2282893--2282947 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
2282883 TTCTATAATT
*
2282893 TGTATCGATATAAACAGTAAA
1 TGTATCGATACAAACAGTAAA
* *
2282914 TGTATCGATACATA-AGTGAA
1 TGTATCGATACAAACAGTAAA
2282934 TGTATCGATACAAA
1 TGTATCGATACAAA
2282948 ACCACACTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (21 bp):
TGTATCGATACAAACAGTAAA
Found at i:2282995 original size:20 final size:20
Alignment explanation
Indices: 2282970--2283067 Score: 83
Period size: 20 Copynumber: 4.8 Consensus size: 20
2282960 ATTGCCAAGG
*
2282970 AAATGTATCGATACATTAGT
1 AAATGTATCGATACATTATT
*
2282990 AAATGTATCGGTACA-TACTT
1 AAATGTATCGATACATTA-TT
*
2283010 AAAATTGTATTGATACATT-TCT
1 -AAA-TGTATCGATACATTAT-T
* * *
2283032 CATTGTATCGATACATTCTT
1 AAATGTATCGATACATTATT
*
2283052 CAATGTATCGATACAT
1 AAATGTATCGATACAT
2283068 GCAGACAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
19 2 0.03
20 44 0.69
21 6 0.09
22 11 0.17
23 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (20 bp):
AAATGTATCGATACATTATT
Found at i:2284067 original size:13 final size:15
Alignment explanation
Indices: 2284044--2284075 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
2284034 TTTTGTTATG
2284044 ATTTATGCTAT-GAA
1 ATTTATGCTATGGAA
2284058 ATTT-TGCTATGGAA
1 ATTTATGCTATGGAA
2284072 ATTT
1 ATTT
2284076 CAGCATGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (15 bp):
ATTTATGCTATGGAA
Found at i:2291747 original size:79 final size:79
Alignment explanation
Indices: 2291615--2291841 Score: 273
Period size: 79 Copynumber: 2.9 Consensus size: 79
2291605 TTGTTGATGT
* *
2291615 TTTTATTCCTAAAACATCGATTTGCCACCATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACATCAATTTGCCACCATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGA
*
2291680 TACTCTAACCCCGA
66 TACTCCAACCCCGA
* **
2291694 TTTTATTTCTAAAACA-CTAATTTTCCACCATCGGGGATACTTTAA-CCCTGTTATTTTCGAGGG
1 TTTTATTTCTAAAACATC-AATTTGCCACCATCGGGGATACTCCAATCCC-GTTATTTTCGAGGG
*
2291757 GATACTCCAACCCTGA
64 GATACTCCAACCCCGA
* ** * **
2291773 TTTTATTTCTAAAACATCGATTTTTCACTATTAGGGATACTCCAA-CCTCGTTA-TTTCTGAGGG
1 TTTTATTTCTAAAACATCAATTTGCCACCATCGGGGATACTCCAATCC-CGTTATTTTC-GAGGG
2291836 GATACT
64 GATACT
2291842 TATCGCAACG
Statistics
Matches: 129, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 8 0.06
79 119 0.92
80 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (79 bp):
TTTTATTTCTAAAACATCAATTTGCCACCATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGA
TACTCCAACCCCGA
Found at i:2292581 original size:14 final size:15
Alignment explanation
Indices: 2292550--2292584 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
2292540 AGAGTTGTAT
*
2292550 AAAATAATTCATACA
1 AAAATAATTAATACA
*
2292565 AAAATAATTAATAAA
1 AAAATAATTAATACA
2292580 AAAAT
1 AAAAT
2292585 GAGGGACGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATAATTAATACA
Found at i:2295053 original size:20 final size:20
Alignment explanation
Indices: 2295028--2295112 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 20
2295018 AATTAACTAG
2295028 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
2295048 ATGTATTGATACATCTGGGTAAAAAA
1 ATGTATCGATACAT-T--G---AAAA
2295074 ATAGAATGTATCGATACATTGAAAA
1 AT-G--T--ATCGATACATTGAAAA
2295099 ATGTATCGATACAT
1 ATGTATCGATACAT
2295113 CAAGGTAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 22
0.68 0.03 0.29
Matches are distributed among these distances:
20 23 0.44
21 1 0.02
22 1 0.02
23 1 0.02
24 1 0.02
25 6 0.12
26 6 0.12
27 1 0.02
28 1 0.02
29 1 0.02
30 1 0.02
31 9 0.17
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:2295085 original size:51 final size:50
Alignment explanation
Indices: 2295028--2295142 Score: 178
Period size: 51 Copynumber: 2.3 Consensus size: 50
2295018 AATTAACTAG
* **
2295028 ATGTATCGATACATTGAAAAATGTATTGATACATCTGGGTAAAAAA-ATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCAAGGTAAAAAACA-A-A
2295079 ATGTATCGATACATTGAAAAATGTATCGATACATCAAGGTAAAAAACAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCAAGGTAAAAAACAAA
2295129 ATGTATCGATACAT
1 ATGTATCGATACAT
2295143 ATACTATTCA
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
50 15 0.25
51 44 0.73
52 1 0.02
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (50 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCAAGGTAAAAAACAAA
Found at i:2296018 original size:79 final size:78
Alignment explanation
Indices: 2295826--2296515 Score: 664
Period size: 79 Copynumber: 8.8 Consensus size: 78
2295816 TGTCTACAAC
* * * * ** *
2295826 ACTCCAACCCCTG-TTTCATTCCTAAAACA-CTAATTTTCACCATTGGGGATACTCCAACCTCGT
1 ACTCCAACCTC-GATTTTATTCCTAAAACATCGATTTTTCACCATCAGGGATACTCCAACCCCGT
2295889 TATTTTGAGGGGAT
65 TATTTTGAGGGGAT
* * * * * *
2295903 ACTCCAACCTCGGTTTGATTCCTAAAGCACCGATTTTTCACCATCGGGGATACTCCAACCCTGTT
1 ACTCCAACCTCGATTTTATTCCTAAAACATCGATTTTTCACCATCAGGGATACTCCAACCCCGTT
*
2295968 ATTTTGGAGGGAAT
66 ATTTT-GAGGGGAT
* * * * * *
2295982 ACTCCAACCTCGGTTTGATTCCTAAAACA-CTAATTTTCCACCATTAGGGATACTCCAACCCCAT
1 ACTCCAACCTCGATTTTATTCCTAAAACATC-GATTTTTCACCATCAGGGATACTCCAACCCCGT
*
2296046 TATTTTTGAGGGCAT
65 TA-TTTTGAGGGGAT
* * * * * *
2296061 ACTTCAACCCCGATTTTATTTCTAAAACATCGA-TTTCCACCATCAGAGATACTCTAACCCCGTT
1 ACTCCAACCTCGATTTTATTCCTAAAACATCGATTTTTCACCATCAGGGATACTCCAACCCCGTT
*
2296125 ATTTCTAAGGGGAT
66 ATTT-TGAGGGGAT
* * * * *
2296139 ACTCCAACCTTGATTTTATTCCTAAAACATCGATTTTCCACCATTAGAGATACTCTAACCCCGTT
1 ACTCCAACCTCGATTTTATTCCTAAAACATCGATTTTTCACCATCAGGGATACTCCAACCCCGTT
*
2296204 ATTTCTTA-GGGAT
66 ATTT-TGAGGGGAT
* * ** * *
2296217 ACTCCAACCTTGATTTTATTCCTAAAACATCAATTTTTCACCATCAATGATACTCCAATCTCGTT
1 ACTCCAACCTCGATTTTATTCCTAAAACATCGATTTTTCACCATCAGGGATACTCCAACCCCGTT
**
2296282 ACTTTCAAGGGGAT
66 A-TTTTGAGGGGAT
* * * * *
2296296 ACTCTAACC-CTGATTTTATTCCAAAAACATCGATTTTTCACTATC-GAAGATATTCCAACCCCG
1 ACTCCAACCTC-GATTTTATTCCTAAAACATCGATTTTTCACCATCAG-GGATACTCCAACCCCG
2296359 TTATTTTCGAGGGGAT
64 TTATTTT-GAGGGGAT
* * * *
2296375 ATTCCAACC-CTAGTTTTATTTCTAAAACATCAATTTTTC-CTCATCAGGGATACTCCAACCCCG
1 ACTCCAACCTCGA-TTTTATTCCTAAAACATCGATTTTTCAC-CATCAGGGATACTCCAACCCCG
*
2296438 TAATTTTGGAGGGGAT
64 TTATTTT-GAGGGGAT
* * * *
2296454 ACTCCAACC-CTGATTTTATTTCC-AAAATATCGACTTTTCACCATCGGGGATACTCTAACCCC
1 ACTCCAACCTC-GATTTTA-TTCCTAAAACATCGATTTTTCACCATCAGGGATACTCCAACCCC
2296516 ATTTTTATTT
Statistics
Matches: 518, Mismatches: 76, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
76 1 0.00
77 27 0.05
78 169 0.33
79 310 0.60
80 11 0.02
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (78 bp):
ACTCCAACCTCGATTTTATTCCTAAAACATCGATTTTTCACCATCAGGGATACTCCAACCCCGTT
ATTTTGAGGGGAT
Found at i:2296112 original size:157 final size:158
Alignment explanation
Indices: 2295826--2296473 Score: 633
Period size: 157 Copynumber: 4.1 Consensus size: 158
2295816 TGTCTACAAC
* * * * *
2295826 ACTCCAACCCCTG-TTTCATTCCTAAAACA-CTAATTTT-CACCATTGGGGATACTCCAACCTCG
1 ACTCCAACCTC-GATTTTATTCCTAAAACATC-AATTTTCCACCATTAGAGATACTCCAACCCCG
* * * * * * * * *
2295888 TTA-TTTTGAGGGGATACTCCAACCTCGGTTTGATTCCTAAAGCACCGATTTTTCACCATCGGGG
64 TTATTTTTGAGGGGATACTCCAACCCCGATTTTATTCCTAAAACATCAATTTTCCACCATCAGAG
* * *
2295952 ATACTCCAACCCTGTTATTTTGGAGGGAAT
129 ATACTCCAACCCCGTTATTTTGAAGGGGAT
* * * *
2295982 ACTCCAACCTCGGTTTGATTCCTAAAACA-CTAATTTTCCACCATTAGGGATACTCCAACCCCAT
1 ACTCCAACCTCGATTTTATTCCTAAAACATC-AATTTTCCACCATTAGAGATACTCCAACCCCGT
* * * *
2296046 TATTTTTGAGGGCATACTTCAACCCCGATTTTATTTCTAAAACATCGA-TTTCCACCATCAGAGA
65 TATTTTTGAGGGGATACTCCAACCCCGATTTTATTCCTAAAACATCAATTTTCCACCATCAGAGA
*
2296110 TACTCTAACCCCGTTATTTCT-AAGGGGAT
130 TACTCCAACCCCGTTATTT-TGAAGGGGAT
* * *
2296139 ACTCCAACCTTGATTTTATTCCTAAAACATCGATTTTCCACCATTAGAGATACTCTAACCCCGTT
1 ACTCCAACCTCGATTTTATTCCTAAAACATCAATTTTCCACCATTAGAGATACTCCAACCCCGTT
** *
2296204 ATTTCTT-A-GGGATACTCCAACCTTGATTTTATTCCTAAAACATCAATTTTTCACCATCA-ATG
66 ATTT-TTGAGGGGATACTCCAACCCCGATTTTATTCCTAAAACATCAATTTTCCACCATCAGA-G
* * * *
2296266 ATACTCCAATCTCGTTACTTTCAAGGGGAT
129 ATACTCCAACCCCGTTATTTTGAAGGGGAT
* * * * * * *
2296296 ACTCTAACC-CTGATTTTATTCCAAAAACATCGATTTTTCACTA-TCGAAGATATTCCAACCCCG
1 ACTCCAACCTC-GATTTTATTCCTAAAACATCAATTTTCCACCATTAG-AGATACTCCAACCCCG
* * * * *
2296359 TTATTTTCGAGGGGATATTCCAA-CCCTAGTTTTATTTCTAAAACATCAATTTTTCC-TCATCAG
64 TTATTTTTGAGGGGATACTCCAACCCCGA-TTTTATTCCTAAAACATCAA-TTTTCCACCATCAG
* * *
2296422 GGATACTCCAACCCCGTAATTTTGGAGGGGAT
127 AGATACTCCAACCCCGTTATTTTGAAGGGGAT
2296454 ACTCCAACC-CTGATTTTATT
1 ACTCCAACCTC-GATTTTATT
2296474 TCCAAAATAT
Statistics
Matches: 414, Mismatches: 62, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
155 1 0.00
156 70 0.17
157 218 0.53
158 120 0.29
159 5 0.01
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (158 bp):
ACTCCAACCTCGATTTTATTCCTAAAACATCAATTTTCCACCATTAGAGATACTCCAACCCCGTT
ATTTTTGAGGGGATACTCCAACCCCGATTTTATTCCTAAAACATCAATTTTCCACCATCAGAGAT
ACTCCAACCCCGTTATTTTGAAGGGGAT
Found at i:2296508 original size:51 final size:52
Alignment explanation
Indices: 2296448--2296615 Score: 218
Period size: 51 Copynumber: 3.3 Consensus size: 52
2296438 TAATTTTGGA
*
2296448 GGGGATACTCCAACCCTGA-TTTTATTTCCAAAATATCGACTTTTCACCATC
1 GGGGATACTCCAACCCTCATTTTTATTTCCAAAATATCGACTTTTCACCATC
* * *
2296499 GGGGATACTCTAACCC-CATTTTTATTTCCAAAATATCAACTTTTTACCATC
1 GGGGATACTCCAACCCTCATTTTTATTTCCAAAATATCGACTTTTCACCATC
* * ** *
2296550 GAGGATACTCCAA-ACTCATTTTTATTTTTAAAATATCGA-TTTACACCATC
1 GGGGATACTCCAACCCTCATTTTTATTTCCAAAATATCGACTTTTCACCATC
*
2296600 AGGGATACTCCAACCC
1 GGGGATACTCCAACCC
2296616 CGTTGTTTTT
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
50 22 0.22
51 77 0.78
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (52 bp):
GGGGATACTCCAACCCTCATTTTTATTTCCAAAATATCGACTTTTCACCATC
Found at i:2298776 original size:79 final size:78
Alignment explanation
Indices: 2298680--2299156 Score: 415
Period size: 79 Copynumber: 6.1 Consensus size: 78
2298670 TTTAGAGATA
** * *
2298680 AAAAT-GGGGTTGGAGTATCCCCTTGGAAATAACAGGGTTGCAGTATCCCCGATGGTGGAAAATC
1 AAAATCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTG-AGTATCCCCAATTGTGGAAAATC
2298744 -GATGTTTTGAAAAT
65 AG-TGTTTTGAAAAT
* * * * *
2298758 AAAATCGGGGTTGGAGTATCCCCTCATAAATAACGGGGTTAGAGTATCCTCGATTGTGAAAAATC
1 AAAATCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTT-GAGTATCCCCAATTGTGGAAAATC
* *
2298823 ATTGTTTTGGAAAT
65 AGTGTTTTGAAAAT
* * * * * * * *
2298837 AAAACCAGGGTTGGAGTATCCTCTCAAAAATAACAGGGTTAAAGTATTCCCAATTATGGAAAACC
1 AAAATCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTT-GAGTATCCCCAATTGTGGAAAATC
* * *
2298902 AGTGCTTTGGAAGT
65 AGTGTTTTGAAAAT
** * * * **
2298916 AAAATTTGGGTTGGAGTATCCCTTCAGAAATAACAGGGTTAGAGTATCCCTAATTATGGATGATC
1 AAAATCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTT-GAGTATCCCCAATTGTGGAAAATC
* *
2298981 GGTGTTTTAAAAAT
65 AGTGTTTTGAAAAT
* * * * *
2298995 AAAACCGAGGTTAGAGTATCCCCTCAGAAATAACAGGTTTGGAGTATCCCCAATTGTGGAAAATT
1 AAAATCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTT-GAGTATCCCCAATTGTGGAAAATC
* *
2299060 AGTGCTTTGGAAAT
65 AGTGTTTTGAAAAT
* * * * * * * *
2299074 AAAA-CTAGGATTAGAGTATCTCCTC-GAAAATAACGGGGTTTAAGTATCCCCGATTGTGAAAAA
1 AAAATC-GGGGTTGGAGTATCCCCTCAG-AAATAACAGGG-TTGAGTATCCCCAATTGTGGAAAA
2299137 TCAGTGTTTT-AGAAAT
63 TCAGTGTTTTGA-AAAT
2299153 AAAA
1 AAAA
2299157 ATATTAATGA
Statistics
Matches: 322, Mismatches: 70, Indels: 13
0.80 0.17 0.03
Matches are distributed among these distances:
78 7 0.02
79 312 0.97
80 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (78 bp):
AAAATCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGAGTATCCCCAATTGTGGAAAATCA
GTGTTTTGAAAAT
Found at i:2299106 original size:237 final size:237
Alignment explanation
Indices: 2298670--2299156 Score: 575
Period size: 237 Copynumber: 2.1 Consensus size: 237
2298660 ATTTTAATAT
* * * * * *
2298670 TTTAGAGATAAAAATGGGGTTGGAGTATCCCCTTGGAAATAACAGGGTTGCAGTATCCCCGATGG
1 TTTAGAAATAAAATTTGGGTTGGAGTATCCCCTTAGAAATAACAGGGTTGCAGTATCCCCAATGA
* * * * * *
2298735 TGGAAAATCGATGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCTCATAAATAACGGGGTTAG
66 TGGAAAATCGATGTTTTAAAAATAAAACCGAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTAG
* * * * * *
2298800 AGTATCCTCGATTGTGAAAAATCATTGTTTTGGAAATAAAACCAGGGTTGGAGTATCCTCTCAAA
131 AGTATCCCCAATTGTGAAAAATCAGTGCTTTGGAAATAAAACCAGGATTAGAGTATCCTCTCAAA
* *
2298865 AATAACAGGGTTAAAGTATTCCCAATTATGGAAAACCAGTGC
196 AATAACAGGGTTAAAGTATCCCCAATTATGAAAAACCAGTGC
* * *
2298907 TTTGGAAGTAAAATTTGGGTTGGAGTAT-CCCTTCAGAAATAACAGGGTTAG-AGTATCCCTAAT
1 TTTAGAAATAAAATTTGGGTTGGAGTATCCCCTT-AGAAATAACAGGGTT-GCAGTATCCCCAAT
* ** * *
2298970 TATGGATGATCGGTGTTTTAAAAATAAAACCGAGGTTAGAGTATCCCCTCAGAAATAACAGGTTT
64 GATGGAAAATCGATGTTTTAAAAATAAAACCGAGGTTAGAGTATCCCCTCAGAAATAACAGGGTT
* * * *
2299035 GGAGTATCCCCAATTGTGGAAAATTAGTGCTTTGGAAATAAAACTAGGATTAGAGTAT-CTCCTC
129 AGAGTATCCCCAATTGTGAAAAATCAGTGCTTTGGAAATAAAACCAGGATTAGAGTATCCT-CTC
* * * * * * *
2299099 GAAAATAACGGGGTTTAAGTATCCCCGATTGTGAAAAATCAGTGT
193 AAAAATAACAGGGTTAAAGTATCCCCAATTATGAAAAACCAGTGC
2299144 TTTAGAAATAAAA
1 TTTAGAAATAAAA
2299157 ATATTAATGA
Statistics
Matches: 206, Mismatches: 41, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
236 7 0.03
237 198 0.96
238 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (237 bp):
TTTAGAAATAAAATTTGGGTTGGAGTATCCCCTTAGAAATAACAGGGTTGCAGTATCCCCAATGA
TGGAAAATCGATGTTTTAAAAATAAAACCGAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTAG
AGTATCCCCAATTGTGAAAAATCAGTGCTTTGGAAATAAAACCAGGATTAGAGTATCCTCTCAAA
AATAACAGGGTTAAAGTATCCCCAATTATGAAAAACCAGTGC
Found at i:2301529 original size:20 final size:19
Alignment explanation
Indices: 2301504--2301559 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
2301494 AAAAATGCCT
*
2301504 AAATGTATTGATACAATGA
1 AAATGTATCGATACAATGA
2301523 GAAATGTATCGATACAATGA
1 -AAATGTATCGATACAATGA
*
2301543 AGAATGTATCAATACAA
1 A-AATGTATCGATACAA
2301560 ATTGTGAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (19 bp):
AAATGTATCGATACAATGA
Found at i:2304805 original size:27 final size:27
Alignment explanation
Indices: 2304768--2304825 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
2304758 CCTTTTTCCC
*
2304768 TTTTAAATCCACAACTCCGTGTCACCT
1 TTTTAAATCCACAACTCCGTGACACCT
* *
2304795 TTTTAAGTCCACAACTCTGTGACACCT
1 TTTTAAATCCACAACTCCGTGACACCT
2304822 TTTT
1 TTTT
2304826 CCCTTTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.29, G:0.09, T:0.38
Consensus pattern (27 bp):
TTTTAAATCCACAACTCCGTGACACCT
Found at i:2304895 original size:60 final size:60
Alignment explanation
Indices: 2304829--2304952 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 60
2304819 CCTTTTTCCC
* * * * *
2304829 TTTTAAGTCTACAACTCT-AGGCACATTTTTCCCTTTTAAGTCCATAACTCCGTGGCACCT
1 TTTTAAGTCCACAACTCTGAGGCAC-CTTTTCCCTATTAAGTCCACAACTCCATGGCACCT
* * * *
2304889 TTTTAAGTCCACAACTTTGTGGTACCTTTTCCCTATTAAGTCCACAACTCTATGGCACCT
1 TTTTAAGTCCACAACTCTGAGGCACCTTTTCCCTATTAAGTCCACAACTCCATGGCACCT
2304949 TTTT
1 TTTT
2304953 CCCTATTAAG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 50 0.93
61 4 0.07
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (60 bp):
TTTTAAGTCCACAACTCTGAGGCACCTTTTCCCTATTAAGTCCACAACTCCATGGCACCT
Found at i:2304897 original size:27 final size:27
Alignment explanation
Indices: 2304862--2305013 Score: 97
Period size: 27 Copynumber: 5.1 Consensus size: 27
2304852 CATTTTTCCC
*
2304862 TTTTAAGTCCATAACTCCGTGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
** *
2304889 TTTTAAGTCCACAACTTTGTGGTACCTTT
1 TTTTAAGTCCACAACTCCGTGGCACC--T
**
2304918 TCCCTATTAAGTCCACAACTCTATGGCACCTTTT
1 T---T-TTAAGTCCACAACTCCGTGGCACC---T
2304952 TCCCTATTAAGTCCACAACTCCGTGGCACCT
1 T---T-TTAAGTCCACAACTCCGTGGCACCT
* * * *
2304983 TTTGAAGCCCACAACTCTGTGACACCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
2305010 TTTT
1 TTTT
2305014 CCCTTTTAAG
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
27 46 0.44
28 1 0.01
29 2 0.02
31 2 0.02
32 1 0.01
33 21 0.20
34 31 0.30
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.35
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCT
Found at i:2304946 original size:94 final size:95
Alignment explanation
Indices: 2304760--2305038 Score: 436
Period size: 94 Copynumber: 3.0 Consensus size: 95
2304750 CCGTGTCACC
* *
2304760 TTTTTCCCTTTTAAATCCACAACTCCGTGTCACCTTTTTAAGTCCACAACTCTGTGACACCTTTT
1 TTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGTGACACCTTTT
*
2304825 TCCCTTTTAAGTCTACAACTCTA-GGCACA
66 TCCCTTTTAAGTCCACAACTCTATGGCACA
* * **
2304854 TTTTTCCCTTTTAAGTCCATAACTCCGTGGCACCTTTTTAAGTCCACAACTTTGTGGTACC-TTT
1 TTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGTGACACCTTTT
* *
2304918 TCCCTATTAAGTCCACAACTCTATGGCACC
66 TCCCTTTTAAGTCCACAACTCTATGGCACA
* * *
2304948 TTTTTCCCTATTAAGTCCACAACTCCGTGGCACCTTTTGAAGCCCACAACTCTGTGACACCTTTT
1 TTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGTGACACCTTTT
2305013 TCCCTTTTAAGTCCACAACTCTATGG
66 TCCCTTTTAAGTCCACAACTCTATGG
2305039 TATCGTTTTA
Statistics
Matches: 166, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
93 24 0.14
94 114 0.69
95 28 0.17
ACGTcount: A:0.22, C:0.31, G:0.11, T:0.36
Consensus pattern (95 bp):
TTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGTGACACCTTTT
TCCCTTTTAAGTCCACAACTCTATGGCACA
Found at i:2305237 original size:32 final size:32
Alignment explanation
Indices: 2305199--2305479 Score: 233
Period size: 32 Copynumber: 8.8 Consensus size: 32
2305189 ATCTCTTATC
*
2305199 TAAGTCCACAACTTTGTGGCACATTTTCCTTT
1 TAAGTCCACAACTCTGTGGCACATTTTCCTTT
* * *
2305231 TAAGTCCACAACTCCGTGCCACATTTTCCTTC
1 TAAGTCCACAACTCTGTGGCACATTTTCCTTT
* *
2305263 TAAGTCCACAACTC-CTGGCACCCTTTTTCCTTT
1 TAAGTCCACAACTCTGTGGCA--CATTTTCCTTT
** * * *
2305296 TAAGTCCACAACTCCATGGCACCTTTTTCTTC
1 TAAGTCCACAACTCTGTGGCACATTTTCCTTT
* * * * *
2305328 CAAGTGCACGACTCAGTGG--CA-TCT-CTTAT
1 TAAGTCCACAACTCTGTGGCACATTTTCCTT-T
* *
2305357 CTGAGTCCACAACTCTGTGGCACCTTTTTCCCTTT
1 -TAAGTCCACAACTCTGTGGCA-CATTTT-CCTTT
2305392 TAAGTCCACAACTCTGTGG--CA----CCTTT
1 TAAGTCCACAACTCTGTGGCACATTTTCCTTT
2305418 TGAAGTCCACAACTCTGTGGCACCATTTTCCTTGT
1 T-AAGTCCACAACTCTGTGGCA-CATTTTCCTT-T
*
2305453 TAAGTCCACAACTCTGTGGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACATTTT
2305480 TCAATACACA
Statistics
Matches: 199, Mismatches: 30, Indels: 39
0.74 0.11 0.15
Matches are distributed among these distances:
26 6 0.03
27 18 0.09
28 3 0.02
29 2 0.01
30 17 0.09
31 5 0.03
32 64 0.32
33 29 0.15
34 49 0.25
35 3 0.02
36 3 0.02
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.34
Consensus pattern (32 bp):
TAAGTCCACAACTCTGTGGCACATTTTCCTTT
Found at i:2305346 original size:159 final size:157
Alignment explanation
Indices: 2305159--2305481 Score: 438
Period size: 159 Copynumber: 2.0 Consensus size: 157
2305149 CAGAGGCATT
* * *
2305159 CTTTTGCTTCCAAGTCCACGACTTAGTGGCATCTCTTATCTAAGTCCACAACTTTGTGGCA-CAT
1 CTTTTTCTTCCAAGTCCACGACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCAT
* *
2305223 TTT-CCTTTTAAGTCCACAACTCCGTGCCACATTTTCCTTCTAAGTCCACAACTC-CTGGCACCC
66 TTTCCCTTTTAAGTCCACAACTCCGTGCCAC--CTT--TT-GAAGTCCACAACTCTCTGGCA-CC
*
2305286 TTTTTCCTT-TTAAGTCCACAACTCCATGGCAC
125 ATTTTCCTTGTTAAGTCCACAACTCCATGGCAC
* * *
2305318 CTTTTTCTTCCAAGTGCACGACTCAGTGGCATCTCTTATCTGAGTCCACAACTCTGTGGCACCTT
1 CTTTTTCTTCCAAGTCCACGACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCAT
* * *
2305383 TTTCCCTTTTAAGTCCACAACTCTGTGGCACCTTTTGAAGTCCACAACTCTGTGGCACCATTTTC
66 TTTCCCTTTTAAGTCCACAACTCCGTGCCACCTTTTGAAGTCCACAACTCTCTGGCACCATTTTC
**
2305448 CTTGTTAAGTCCACAACTCTGTGGCAC
131 CTTGTTAAGTCCACAACTCCATGGCAC
2305475 CTTTTTC
1 CTTTTTC
2305482 AATACACAAC
Statistics
Matches: 146, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
156 23 0.16
157 35 0.24
159 58 0.40
160 5 0.03
161 25 0.17
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.35
Consensus pattern (157 bp):
CTTTTTCTTCCAAGTCCACGACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCAT
TTTCCCTTTTAAGTCCACAACTCCGTGCCACCTTTTGAAGTCCACAACTCTCTGGCACCATTTTC
CTTGTTAAGTCCACAACTCCATGGCAC
Found at i:2305425 original size:27 final size:26
Alignment explanation
Indices: 2305387--2305579 Score: 131
Period size: 27 Copynumber: 6.7 Consensus size: 26
2305377 CACCTTTTTC
2305387 CCTTTTAAGTCCACAACTCTGTGGCA
1 CCTTTTAAGTCCACAACTCTGTGGCA
2305413 CCTTTTGAAGTCCACAACTCTGTGGCACCA
1 CCTTTT-AAGTCCACAACTCTGTGG---CA
2305443 TTTTCCTTGTTAAGTCCACAACTCTGTGGCA
1 ----CCTT-TTAAGTCCACAACTCTGTGGCA
*
2305474 CCTTTTTCAA-TACACAACT-TCGTGGCA
1 CC-TTTT-AAGTCCACAACTCT-GTGGCA
*
2305501 CCTTGTTCCTTAAAGTCCACAACT-TCGTGACA
1 CC---TT--TT-AAGTCCACAACTCT-GTGGCA
* *
2305533 TCCTTTTAAGTCCAAAACTCCGTGGCA
1 -CCTTTTAAGTCCACAACTCTGTGGCA
*
2305560 CCCTTTAAAGTCCACAACTC
1 -CCTTTTAAGTCCACAACTC
2305580 AGTCGCATCT
Statistics
Matches: 137, Mismatches: 11, Indels: 37
0.74 0.06 0.20
Matches are distributed among these distances:
26 7 0.05
27 71 0.52
28 6 0.04
29 2 0.01
30 4 0.03
31 6 0.04
32 15 0.11
33 2 0.01
34 22 0.16
35 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.31
Consensus pattern (26 bp):
CCTTTTAAGTCCACAACTCTGTGGCA
Found at i:2305433 original size:61 final size:60
Alignment explanation
Indices: 2304756--2305998 Score: 457
Period size: 61 Copynumber: 20.1 Consensus size: 60
2304746 AAGTCCGTGT
* * * *
2304756 CACCTTTTTCCCTTTTAAATCCACAACTCCGTGTCACCTTTTTAAGTCCACAACTCTGTGA
1 CACCTTTTT-CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGG
* * * * *
2304817 CACCTTTTTCCCTTTTAAGTCTACAACTCTAG-GCACATTTTTCCCTTTTAAGTCCATAACTCCG
1 CACCTTTTT-CCTTTTAAGTCCACAACTCT-GTG-GCA-----CCTTTTTAAGTCCACAACTCTG
2304881 TGG
58 TGG
* * *
2304884 CACC----T--TTTTAAGTCCACAACTTTGTGGTACCTTTTCCCTATTAAGTCCACAACTCTATG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACC--TT---T-TTAAGTCCACAACTCTGTG
2304943 G
60 G
* * * * *
2304944 CACCTTTTTCCCTATTAAGTCCACAACTCCGTGGCACCTTTTGAAGCCCACAACTCTGTGA
1 CACCTTTTT-CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGG
* * * * * * *
2305005 CACCTTTTTCCCTTTTAAGTCCACAACTCTATGGTATCGTTTTAGGTACACAACTCCGTGG
1 CACCTTTTT-CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGG
* * * * * ** ** *
2305066 CACCTTATTCC-TTAAAGTCCATAACTCTATGGCACCCTTCAAAGTCCATTACTCAGTGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGG
* * *** * * * * *
2305125 CATCTCTTCTCC----AAGTCCTTGACCCAGAGGCATTCTTTTGCTTCCAAGTCCACGACT-TAG
1 CACCT-TTTTCCTTTTAAGTCCACAACTCTGTGGCA--CCTTT--TT--AAGTCCACAACTCT-G
2305185 TGG
58 TGG
* * * * *
2305188 CATCTCTTAT-C---TAAGTCCACAACTTTGTGGCACATTTTCCTTTTAAGTCCACAACTCCGTG
1 CACCT-TTTTCCTTTTAAGTCCACAACTCTGTGGCAC-----CTTTTTAAGTCCACAACTCTGTG
*
2305249 C
60 G
* * * **
2305250 CA-CATTTTCCTTCTAAGTCCACAACTC-CTGGCACCCTTTTTCCTTTTAAGTCCACAACTCCAT
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-CC----T--TTTTAAGTCCACAACTCTGT
2305313 GG
59 GG
** * * * * *
2305315 CACCTTTTT-CTTCCAAGTGCACGACTCAGTGGCATCTCTTATCTGAGTCCACAACTCTGTGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-C-CTT-TTTAAGTCCACAACTCTGTGG
*
2305377 CACCTTTTTCCCTTTTAAGTCCACAACTCTGTGGCACCTTTTGAAGTCCACAACTCTGTGG
1 CACCTTTTT-CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGG
* *
2305438 CACCATTTTCCTTGTTAAGTCCACAACTCTGTGGCACCTTTTTCAA-TACACAACT-TCGTGG
1 CACCTTTTTCCTT-TTAAGTCCACAACTCTGTGGCACCTTTTT-AAGTCCACAACTCT-GTGG
* * * * *
2305499 CACCTTGTTCC-TTAAAGTCCACAACT-TCGTGACATCC-TTTTAAGTCCAAAACTCCGTGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCT-GTGGCA-CCTTTTTAAGTCCACAACTCTGTGG
* * * * * **
2305558 CA-C-----CCTTTAAAGTCCACAACTCAGTCGCATCTCTTCTCAAGTCCATGACT-TAGTGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-C-CTTTTTAAGTCCACAACTCT-GTGG
* ** *
2305614 CATTCTTTTT-CTTCCAAAAGTCCACAACT-TAGTGGCATCTTTTTTCTCCCAAAGTCCACAACT
1 CA-CCTTTTTCCTT--TTAAGTCCACAACTCT-GTGGCA-C-CTTTT-T----AAGTCCACAACT
*
2305677 -TAGTGA
55 CT-GTGG
* * * * * ** * *
2305683 CATC-TCTT-C-TCTGAGTCCATAACTCCATGGCACCTTTTCCTTTTAAGTCTACAACT-TCGCG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACC---T--TTTTAAGTCCACAACTCT-GTG
2305744 G
60 G
* * * * *
2305745 CACC-TTTTCCTTTTAAGTCTACCACTCCGTAGCACCTTTTTAAGTCCACAACTCCGTGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGG
* * * * * * * *
2305804 CACCTTTATCCCTTTAAAGTGCATAACTCCGTGGCAACTCTTTCCCTTTTTAGTCCATAACTCCG
1 CACCTTT-TTCCTTTTAAGTCCACAACTCTGTGGC-AC-C--T---TTTTAAGTCCACAACTCTG
2305869 TGG
58 TGG
* * * *
2305872 CACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACTTTTTTAAGTGCATAACT-TCGTGG
1 CACCTTTTT-CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCT-GTGG
* * * **
2305933 CACCTTATTCC-TTTAAGTCCATAACTCTGTGGCATCC-TTTTAAGTTCACAACTCCATGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-CCTTTTTAAGTCCACAACTCTGTGG
2305992 CACCTTT
1 CACCTTT
2305999 CAAAATCCAT
Statistics
Matches: 900, Mismatches: 180, Indels: 206
0.70 0.14 0.16
Matches are distributed among these distances:
53 2 0.00
54 23 0.03
55 1 0.00
56 19 0.02
57 14 0.02
58 5 0.01
59 148 0.16
60 60 0.07
61 227 0.25
62 77 0.09
63 47 0.05
64 95 0.11
65 41 0.05
66 15 0.02
67 58 0.06
68 51 0.06
69 17 0.02
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (60 bp):
CACCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGG
Found at i:2305476 original size:95 final size:93
Alignment explanation
Indices: 2305226--2305481 Score: 267
Period size: 95 Copynumber: 2.7 Consensus size: 93
2305216 GGCACATTTT
* * * *
2305226 CCTTTTAAGTCCACAACTCCGTGCCA-CATTTTCCTTCTAAGTCCACAACTC-CTGGCACCCTTT
1 CCTTTTAAGTCCACAACTCAGTGGCACCATTTTCCTTGTAAGTCCACAACTCTGTGGCA-CCTTT
2305289 TT-CCTTTTAAGTCCACAACTCCATGGCA
65 TTCCCTTTTAAGTCCACAACTCCATGGCA
* * *
2305317 CCTTTTTCTTCCAAGTGCACGACTCAGTGGCATCTC-TTAT-C-TG--AGTCCACAACTCTGTGG
1 CC---TT-TT--AAGTCCACAACTCAGTGGCA-C-CATTTTCCTTGTAAGTCCACAACTCTGTGG
**
2305377 CACCTTTTTCCCTTTTAAGTCCACAACTCTGTGGCA
58 CACCTTTTTCCCTTTTAAGTCCACAACTCCATGGCA
*
2305413 CCTTTTGAAGTCCACAACTCTGTGGCACCATTTTCCTTGTTAAGTCCACAACTCTGTGGCACCTT
1 CCTTTT-AAGTCCACAACTCAGTGGCACCATTTTCCTTG-TAAGTCCACAACTCTGTGGCACCTT
2305478 TTTC
64 TTTC
2305482 AATACACAAC
Statistics
Matches: 134, Mismatches: 14, Indels: 30
0.75 0.08 0.17
Matches are distributed among these distances:
89 1 0.01
90 4 0.03
91 20 0.15
92 4 0.03
93 2 0.01
94 2 0.01
95 48 0.36
96 31 0.23
97 17 0.13
98 1 0.01
99 3 0.02
100 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (93 bp):
CCTTTTAAGTCCACAACTCAGTGGCACCATTTTCCTTGTAAGTCCACAACTCTGTGGCACCTTTT
TCCCTTTTAAGTCCACAACTCCATGGCA
Found at i:2305527 original size:32 final size:30
Alignment explanation
Indices: 2304796--2305973 Score: 330
Period size: 34 Copynumber: 37.9 Consensus size: 30
2304786 GTGTCACCTT
*
2304796 TTTAAGTCCACAACTCTGTGACACCTTTTTCCC
1 TTTAAGTCCACAACTC-GTGGCACC-TTTT-CC
* *
2304829 TTTTAAGTCTACAACTC-TAGGCACATTTTTCCC
1 -TTTAAGTCCACAACTCGT-GGCAC-CTTTT-CC
*
2304862 TTTTAAGTCCATAACTCCGTGGCACC--TT--
1 -TTTAAGTCCACAACT-CGTGGCACCTTTTCC
* *
2304890 TTTAAGTCCACAACTTTGTGGTACCTTTTCCC
1 TTTAAGTCCACAAC-TCGTGGCACCTTTT-CC
*
2304922 TATTAAGTCCACAACTCTATGGCACCTTTTTCCC
1 T-TTAAGTCCACAACTC-GTGGCACC-TTTT-CC
2304956 TATTAAGTCCACAACTCCGTGGCACC--TT--
1 T-TTAAGTCCACAACT-CGTGGCACCTTTTCC
* * *
2304984 TTGAAGCCCACAACTCTGTGACACCTTTTTCCC
1 TTTAAGTCCACAACTC-GTGGCACC-TTTT-CC
* * **
2305017 TTTTAAGTCCACAACTCTATGGTA--TCGT--
1 -TTTAAGTCCACAACTC-GTGGCACCTTTTCC
* *
2305045 TTTAGGTACACAACTCCGTGGCACCTTATTCC
1 TTTAAGTCCACAACT-CGTGGCACCTT-TTCC
* * * *
2305077 TTAAAGTCCATAACTCTATGGCACC-CTT-C
1 TTTAAGTCCACAACTC-GTGGCACCTTTTCC
* ** * *
2305106 --AAAGTCCATTACTCAGTGGCATCTCTT-C
1 TTTAAGTCCACAACTC-GTGGCACCTTTTCC
** *** * * * *
2305134 TCCAAGTCCTTGACCCAGAGGCATTCTTTTGC
1 TTTAAGTCCACAACTC-GTGGCA-CCTTTTCC
* * * * * *
2305166 TTCCAAGTCCACGACTTAGTGGCATCTCTT-A
1 TT-TAAGTCCACAAC-TCGTGGCACCTTTTCC
* * *
2305197 TCTAAGTCCACAACTTTGTGGCACATTTTCC
1 TTTAAGTCCACAAC-TCGTGGCACCTTTTCC
* *
2305228 TTTTAAGTCCACAACTCCGTGCCACATTTTCC
1 -TTTAAGTCCACAACT-CGTGGCACCTTTTCC
*
2305260 TTCTAAGTCCACAACTCCTGGCACCCTTTTTCC
1 TT-TAAGTCCACAACTCGTGGCA-CC-TTTTCC
* *
2305293 TTTTAAGTCCACAACTCCATGGCACCTTTTTC
1 -TTTAAGTCCACAACT-CGTGGCACCTTTTCC
* * * * * *
2305325 TTCCAAGTGCACGACTCAGTGGCATCTCTT-A
1 TT-TAAGTCCACAACTC-GTGGCACCTTTTCC
* *
2305356 TCTGAGTCCACAACTCTGTGGCACCTTTTTCCC
1 TTTAAGTCCACAACTC-GTGGCACC-TTTT-CC
2305389 TTTTAAGTCCACAACTCTGTGGCACC--TT--
1 -TTTAAGTCCACAACTC-GTGGCACCTTTTCC
*
2305417 TTGAAGTCCACAACTCTGTGGCACCATTTTCC
1 TTTAAGTCCACAACTC-GTGGCACC-TTTTCC
2305449 TTGTTAAGTCCACAACTCTGTGGCACC-TTT--
1 -T-TTAAGTCCACAACTC-GTGGCACCTTTTCC
* *
2305479 TTCAA-TACACAACTTCGTGGCACCTTGTTCC
1 TTTAAGTCCACAAC-TCGTGGCACCTT-TTCC
* *
2305510 TTAAAGTCCACAACTTCGT-G-A-C--ATCC
1 TTTAAGTCCACAAC-TCGTGGCACCTTTTCC
*
2305536 TTTTAAGTCCAAAACTCCGTGGCA-C----CC
1 -TTTAAGTCCACAACT-CGTGGCACCTTTTCC
* * *
2305563 TTTAAAGTCCACAACTCAGTCGCATCTCTT-C
1 TTT-AAGTCCACAACTC-GTGGCACCTTTTCC
* ** * * *
2305594 -TCAAGTCCATGACTTAGTGGCATTCTTTTTC
1 TTTAAGTCCACAAC-TCGTGGCA-CCTTTTCC
* * *
2305625 TTCCAAAAGTCCACAACTTAGTGGCATCTTTTTTCTC
1 TT---TAAGTCCACAAC-TCGTGGCA-C-CTTTTC-C
*** * * * *
2305662 CCAAAGTCCACAACTTAGTGACATCTCTT-C
1 TTTAAGTCCACAAC-TCGTGGCACCTTTTCC
* * * *
2305692 TCTGAGTCCATAACTCCATGGCACCTTTTCC
1 TTTAAGTCCACAACT-CGTGGCACCTTTTCC
* *
2305723 TTTTAAGTCTACAACTTCGCGGCACCTTTTCC
1 -TTTAAGTCCACAAC-TCGTGGCACCTTTTCC
* * *
2305755 TTTTAAGTCTACCACTCCGTAGCACC--TT--
1 -TTTAAGTCCACAACT-CGTGGCACCTTTTCC
2305783 TTTAAGTCCACAACTCCGTGGCACCTTTATCCC
1 TTTAAGTCCACAACT-CGTGGCACCTTT-T-CC
* * *
2305816 TTTAAAGTGCATAACTCCGTGGCAACTCTTTCCC
1 TTT-AAGTCCACAACT-CGTGGC-AC-CTTTTCC
* *
2305850 TTTTTAGTCCATAACTCCGTGGCACCTTTTTCCC
1 -TTTAAGTCCACAACT-CGTGGCACC-TTTT-CC
2305884 TTTTAAGTCCACAACTCCGTGGCA-C-TTT--
1 -TTTAAGTCCACAACT-CGTGGCACCTTTTCC
* *
2305912 TTTAAGTGCATAACTTCGTGGCACCTTATTCC
1 TTTAAGTCCACAAC-TCGTGGCACCTT-TTCC
*
2305944 TTTAAGTCCATAACTCTGTGGCATCCTTTT
1 TTTAAGTCCACAACTC-GTGGCA-CCTTTT
2305974 AAGTTCACAA
Statistics
Matches: 888, Mismatches: 148, Indels: 218
0.71 0.12 0.17
Matches are distributed among these distances:
26 9 0.01
27 188 0.21
28 17 0.02
29 27 0.03
30 93 0.10
31 44 0.05
32 177 0.20
33 95 0.11
34 203 0.23
35 26 0.03
36 8 0.01
37 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (30 bp):
TTTAAGTCCACAACTCGTGGCACCTTTTCC
Found at i:2305671 original size:433 final size:425
Alignment explanation
Indices: 2304925--2306125 Score: 1226
Period size: 433 Copynumber: 2.8 Consensus size: 425
2304915 TTTTCCCTAT
* *
2304925 TAAGTCCACAACTCTATGGCACCTTTTTCCCTATTAAGTCCACAACTCCGTGGCACCTTTTGAAG
1 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTGAAG
* * * * * *
2304990 CCCACAACTCTGTGACACCTTTTTCCCTTTTAAGTCCACAACTCTATGGTATCGTTTTAGGTACA
66 TCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCTGTGGCA-CTTTTTA-ATACA
* * * ** **
2305055 CAACTCCGTGGCACCTTATTCCTTAAAGTCCATAACTCTATGGCACCCTTCAAAGTCCATTACTC
129 CAACTTCGTGGCACCTTATTCCTTAAAGTCCATAACTCTGTGGCATCCTTTTAAGTCCAAAACTC
* * * * * *
2305120 AGTGGCATCTCTTCTCCAAGTCCTTGACCCAGAGGCATTCTTTTGCTTCCAAGTCCACGACTTAG
194 CGTGGCA-CCCTT-TCAAAGTCCATGACTCAGAGGCA-TCTCTT-CTTCCAAGTCCACGACTTAG
* * * * ***
2305185 TGGCA-TCTCTTATCT--AAGTCCACAACTTTGTGGCA-CATTTTCCT-TTTAAGTCCACAACTC
255 TGGCATTCT-TTTTCTCCAAGTCCACAACTTAGTGGCATCTTTTTTCTCCAAAAGTCCACAACTC
*
2305245 CGTGCCACAT-T-TTCCTTCTAAGTCCACAACTCC-TGGCACCCTTTTTCCTTTTAAGTCCACAA
319 AGTG--ACATCTCTT-C-TCTAAGTCCACAACTCCATGGCA-CC-TTTTCCTTTTAAGTCCACAA
* * * *
2305307 CTCCATGGCACCTTTTTCTTCCAAGTGC-ACGACTCAGTGGCATCTCTTATC
378 CTCCACGGCACCTTTTCCTTCCAAGT-CTACCACTCAGTAGCA-C-CTT-TC
* *
2305358 TGAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCTGTGGCACCTTTTGAAG
1 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTGAAG
*
2305423 TCCACAACTCTGTGGCACCATTTT-CCTTGTTAAGTCCACAACTCTGTGGCACCTTTTTCAATAC
66 TCCACAACTCTGTGGCACCTTTTTCCCTT-TTAAGTCCACAACTCTGTGGCA-CTTTTT-AATAC
* * *
2305487 ACAACTTCGTGGCACCTTGTTCCTTAAAGTCCACAACT-TCGTGACATCCTTTTAAGTCCAAAAC
128 ACAACTTCGTGGCACCTTATTCCTTAAAGTCCATAACTCT-GTGGCATCCTTTTAAGTCCAAAAC
** ** *
2305551 TCCGTGGCACCCTTT-AAAGTCCACAACTCAGTCGCATCTCTTC-T-CAAGTCCATGACTTAGTG
192 TCCGTGGCACCCTTTCAAAGTCCATGACTCAGAGGCATCTCTTCTTCCAAGTCCACGACTTAGTG
* *
2305613 GCATTCTTTTTCTTCCAAAAGTCCACAACTTAGTGGCATCTTTTTTCTCCCAAAGTCCACAACTT
257 GCATTCTTTTTC-TCC--AAGTCCACAACTTAGTGGCATCTTTTTTCTCCAAAAGTCCACAACTC
* * * * *
2305678 AGTGACATCTCTTCTCTGAGTCCATAACTCCATGGCACCTTTTCCTTTTAAGTCTACAACTTCGC
319 AGTGACATCTCTTCTCTAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGTCCACAACTCCAC
** * *
2305743 GGCACCTTTTCCTTTTAAGTCTACCACTCCGTAGCACCTTTT
384 GGCACCTTTTCCTTCCAAGTCTACCACTCAGTAGCACCTTTC
* * * * *
2305785 TAAGTCCACAACTCCGTGGCACCTTTATCCCTTTAAAGTGCATAACTCCGTGGCAACTCTTTCCC
1 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGC-AC-C--T---
** * * *
2305850 TTTTTAGTCCATAACTCCGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACTTTTTT
59 TTTGAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCTGTGGCAC-TTTTT
* * * *
2305915 AAGTGCATAACTTCGTGGCACCTTATTCCTTTAAGTCCATAACTCTGTGGCATCCTTTTAAGTTC
123 AA-TACACAACTTCGTGGCACCTTATTCCTTAAAGTCCATAACTCTGTGGCATCCTTTTAAGTCC
* * * * *
2305980 ACAACTCCATGGCA-CCTTTCAAAATCCATGACTTAGAGGCATCCTCTAACTTCCAAAAGTCCAC
187 AAAACTCCGTGGCACCCTTTCAAAGTCCATGACTCAGAGGCAT-CTCT-TCTTCC--AAGTCCAC
* * *
2306044 GGCTTAGTGGCATCCTTTTTCTCCCAAGTCCACAACTCAGTGGCATCTTTTTTCGTCCAAAAGTC
248 GACTTAGTGGCATTCTTTTTCT-CCAAGTCCACAACTTAGTGGCATCTTTTTTC-TCCAAAAGTC
* * *
2306109 CACGACTTAGTGCCATC
311 CACAACTCAGTGACATC
2306126 CTTTTTGTCC
Statistics
Matches: 642, Mismatches: 91, Indels: 64
0.81 0.11 0.08
Matches are distributed among these distances:
426 24 0.04
427 53 0.08
428 6 0.01
429 8 0.01
430 64 0.10
431 42 0.07
432 23 0.04
433 195 0.30
434 134 0.21
435 9 0.01
436 1 0.00
437 1 0.00
438 29 0.05
439 25 0.04
440 28 0.04
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (425 bp):
TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTGAAG
TCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCTGTGGCACTTTTTAATACACA
ACTTCGTGGCACCTTATTCCTTAAAGTCCATAACTCTGTGGCATCCTTTTAAGTCCAAAACTCCG
TGGCACCCTTTCAAAGTCCATGACTCAGAGGCATCTCTTCTTCCAAGTCCACGACTTAGTGGCAT
TCTTTTTCTCCAAGTCCACAACTTAGTGGCATCTTTTTTCTCCAAAAGTCCACAACTCAGTGACA
TCTCTTCTCTAAGTCCACAACTCCATGGCACCTTTTCCTTTTAAGTCCACAACTCCACGGCACCT
TTTCCTTCCAAGTCTACCACTCAGTAGCACCTTTC
Found at i:2305790 original size:27 final size:27
Alignment explanation
Indices: 2305755--2305810 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
2305745 CACCTTTTCC
* *
2305755 TTTTAAGTCTACCACTCCGTAGCACCT
1 TTTTAAGTCCACAACTCCGTAGCACCT
*
2305782 TTTTAAGTCCACAACTCCGTGGCACCT
1 TTTTAAGTCCACAACTCCGTAGCACCT
2305809 TT
1 TT
2305811 ATCCCTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.34
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTAGCACCT
Found at i:2305866 original size:68 final size:63
Alignment explanation
Indices: 2305696--2305998 Score: 216
Period size: 59 Copynumber: 4.9 Consensus size: 63
2305686 CTCTTCTCTG
* * * * * * * *
2305696 AGTCCATAACTCCATGGCACCTTTTCCTTTTAAGTCTACAACTTCGCGGCACCTTT-TCCTTTTA
1 AGTCCATAACTCCGTGGCAAC--TTCCTTTTTAGTCCATAACTCCGTGGCACCTTTATCCCTTTA
* ** * *
2305760 AGTCTACCACTCCGTAGC-A---CCTTTTTAAGTCCACAACTCCGTGGCACCTTTATCCCTTTAA
1 AGTCCATAACTCCGTGGCAACTTCCTTTTT-AGTCCATAACTCCGTGGCACCTTTATCCCTTT-A
* *
2305821 AGTGCATAACTCCGTGGCAACTCTTTCCCTTTTTAGTCCATAACTCCGTGGCACCTTTTTCCCTT
1 AGTCCATAACTCCGTGGCAA--C-TT-CCTTTTTAGTCCATAACTCCGTGGCACCTTTATCCC-T
2305886 TTA
61 TTA
* * * * *
2305889 AGTCCACAACTCCGTGGC-ACTT--TTTTAAGTGCATAACTTCGTGGCACC-TTATTCCTTTA
1 AGTCCATAACTCCGTGGCAACTTCCTTTTTAGTCCATAACTCCGTGGCACCTTTATCCCTTTA
* * * * *
2305948 AGTCCATAACTCTGTGGC-A--TCCTTTTAAGTTCACAACTCCATGGCACCTTT
1 AGTCCATAACTCCGTGGCAACTTCCTTTTTAGTCCATAACTCCGTGGCACCTTT
2305999 CAAAATCCAT
Statistics
Matches: 193, Mismatches: 31, Indels: 34
0.75 0.12 0.13
Matches are distributed among these distances:
57 1 0.01
58 6 0.03
59 64 0.33
60 13 0.07
61 37 0.19
62 1 0.01
64 15 0.08
65 1 0.01
67 1 0.01
68 44 0.23
69 10 0.05
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (63 bp):
AGTCCATAACTCCGTGGCAACTTCCTTTTTAGTCCATAACTCCGTGGCACCTTTATCCCTTTA
Found at i:2305914 original size:129 final size:124
Alignment explanation
Indices: 2305696--2305972 Score: 340
Period size: 129 Copynumber: 2.2 Consensus size: 124
2305686 CTCTTCTCTG
* * * *
2305696 AGTCCATAACTCCATGGC-ACCTTTTCCTTTTAAGTCTACAACTTCGCGGCACCTTTTCCTTTTA
1 AGTCCATAACTCCGTGGCAACCTTTCCCTTTTAAGTCCACAACTCCGCGGCACCTTTTCCTTTTA
* *
2305760 AGTCTACCACTCCGTAGCACCTTTTTAAGTCCACAACTCCGTGGCACCTTTATCCCTTTAA
66 AGTCCACAACTCCGTAGCACCTTTTTAAGTCCACAACTCCGTGGCACC-TTATCCCTTT-A
* * * *
2305821 AGTGCATAACTCCGTGGCAACTCTTTCCCTTTTTAGTCCATAACTCCGTGGCACCTTTTTCCCTT
1 AGTCCATAACTCCGTGGCAAC-CTTTCCCTTTTAAGTCCACAACTCCGCGGCACC-TTTT-CCTT
* * * * * *
2305886 TTAAGTCCACAACTCCGTGGCACTTTTTTAAGTGCATAACTTCGTGGCACCTTATTCCTTTA
63 TTAAGTCCACAACTCCGTAGCACCTTTTTAAGTCCACAACTCCGTGGCACCTTATCCCTTTA
* *
2305948 AGTCCATAACTCTGTGGCATCCTTT
1 AGTCCATAACTCCGTGGCAACCTTT
2305973 TAAGTTCACA
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
125 16 0.12
126 6 0.05
127 46 0.36
128 13 0.10
129 48 0.37
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.36
Consensus pattern (124 bp):
AGTCCATAACTCCGTGGCAACCTTTCCCTTTTAAGTCCACAACTCCGCGGCACCTTTTCCTTTTA
AGTCCACAACTCCGTAGCACCTTTTTAAGTCCACAACTCCGTGGCACCTTATCCCTTTA
Found at i:2305926 original size:27 final size:28
Alignment explanation
Indices: 2305884--2305994 Score: 91
Period size: 27 Copynumber: 3.9 Consensus size: 28
2305874 CCTTTTTCCC
2305884 TTTTAAGTCCACAACTCCGTGGCACT-T
1 TTTTAAGTCCACAACTCCGTGGCACTAT
* * *
2305911 TTTTAAGTGCATAACTTCGTGGCACCTTAT
1 TTTTAAGTCCACAACTCCGTGGCA-C-TAT
* * **
2305941 TCCTTTAAGTCCATAACTCTGTGGCA-TCC
1 T--TTTAAGTCCACAACTCCGTGGCACTAT
* *
2305970 TTTTAAGTTCACAACTCCATGGCAC
1 TTTTAAGTCCACAACTCCGTGGCAC
2305995 CTTTCAAAAT
Statistics
Matches: 66, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
27 40 0.61
28 1 0.02
29 3 0.05
30 2 0.03
32 20 0.30
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.35
Consensus pattern (28 bp):
TTTTAAGTCCACAACTCCGTGGCACTAT
Found at i:2306126 original size:68 final size:69
Alignment explanation
Indices: 2306031--2306158 Score: 204
Period size: 68 Copynumber: 1.9 Consensus size: 69
2306021 TCCTCTAACT
* * *
2306031 TCCAAAAGTCCACGGCTTAGTGGCATCCTTTTTCTCCC-AAGTCCACAACTCAGTGGCATCTTTT
1 TCCAAAAGTCCACGACTTAGTGCCATCCTTTTTCTCCCAAAGTCCACAACTCAATGGCATCTTTT
2306095 TTCG
66 TTCG
* *
2306099 TCCAAAAGTCCACGACTTAGTGCCATCCTTTTTGTCCCAAAGTCCACGACTCAATGGCAT
1 TCCAAAAGTCCACGACTTAGTGCCATCCTTTTTCTCCCAAAGTCCACAACTCAATGGCAT
2306159 TTCTTCTTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
68 35 0.65
69 19 0.35
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (69 bp):
TCCAAAAGTCCACGACTTAGTGCCATCCTTTTTCTCCCAAAGTCCACAACTCAATGGCATCTTTT
TTCG
Found at i:2306131 original size:35 final size:35
Alignment explanation
Indices: 2305999--2306158 Score: 157
Period size: 35 Copynumber: 4.7 Consensus size: 35
2305989 TGGCACCTTT
* * * ** *
2305999 CAAAA-TCCATGACTTAGAGGCATCCTCTAACTTC
1 CAAAAGTCCACGACTTAGTGGCATCCTTTTTCGTC
*
2306033 CAAAAGTCCACGGCTTAGTGGCATCCTTTTTC-TC
1 CAAAAGTCCACGACTTAGTGGCATCCTTTTTCGTC
* * * *
2306067 C-CAAGTCCACAACTCAGTGGCATCTTTTTTCGTC
1 CAAAAGTCCACGACTTAGTGGCATCCTTTTTCGTC
*
2306101 CAAAAGTCCACGACTTAGTGCCATCCTTTTT-GTC
1 CAAAAGTCCACGACTTAGTGGCATCCTTTTTCGTC
* * *
2306135 CCAAAGTCCACGACTCAATGGCAT
1 CAAAAGTCCACGACTTAGTGGCAT
2306159 TTCTTCTTTA
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
33 25 0.24
34 34 0.33
35 44 0.43
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.29
Consensus pattern (35 bp):
CAAAAGTCCACGACTTAGTGGCATCCTTTTTCGTC
Found at i:2306294 original size:27 final size:26
Alignment explanation
Indices: 2306228--2306392 Score: 107
Period size: 27 Copynumber: 6.0 Consensus size: 26
2306218 CACCTTTTCC
* *
2306228 TTTTAAGTCCACAACTCTATGCCTCCT
1 TTTTAAGTCCACAACTC-ATGGCACCT
* *
2306255 TTTTAAG-CTACAACTGCATGGCACCA
1 TTTTAAGTCCACAACT-CATGGCACCT
* * *
2306281 TTTTAAGTCCACAACTCCGTGGTACTT
1 TTTTAAGTCCACAACT-CATGGCACCT
* * *
2306308 TTTTAAGTCCACAACTCCGTGACACATTTTT
1 TTTTAAGTCCACAACT-CATGGCAC----CT
* * *
2306339 CTTTTAAGTTCACAACTCTGTGGCATCT
1 -TTTTAAGTCCACAACTC-ATGGCACCT
2306367 TTTTAAGTCCACAACTCCATGGCACC
1 TTTTAAGTCCACAACT-CATGGCACC
2306393 CTTCCAATTC
Statistics
Matches: 110, Mismatches: 19, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
26 20 0.18
27 65 0.59
28 2 0.02
31 3 0.03
32 20 0.18
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (26 bp):
TTTTAAGTCCACAACTCATGGCACCT
Found at i:2306469 original size:35 final size:34
Alignment explanation
Indices: 2306430--2306517 Score: 140
Period size: 35 Copynumber: 2.6 Consensus size: 34
2306420 TCTTCTCAAC
2306430 TCCACGACTTAGTGGCATCCTTTTTCTTCCAAAAG
1 TCCACGACTTAGTGGCATCCTTTTTCTTCC-AAAG
* * *
2306465 TCCACAACATAGTGGCATCTTTTTTCTTCCAAAG
1 TCCACGACTTAGTGGCATCCTTTTTCTTCCAAAG
2306499 TCCACGACTTAGTGGCATC
1 TCCACGACTTAGTGGCATC
2306518 TCTTCTCTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 21 0.44
35 27 0.56
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (34 bp):
TCCACGACTTAGTGGCATCCTTTTTCTTCCAAAG
Found at i:2306551 original size:64 final size:62
Alignment explanation
Indices: 2306430--2306615 Score: 153
Period size: 63 Copynumber: 2.9 Consensus size: 62
2306420 TCTTCTCAAC
* * * *
2306430 TCCACGACTTAGTGGCATCCTTTTTCTTCCAAAAGTCCACAACA-TAGTGGCATCTTTTTTCTTC
1 TCCACGACTTAGTGGCAT-C-TCTTC-T-C-TAAGTCCACAACACT-GTGGCA-CCTTTTCCTT-
2306494 CAAAG
58 CAAAG
**
2306499 TCCACGACTTAGTGGCATCTCTTCTCTAAGTCCACAACACTGTGGCACCTTTTCCTTTTAAG
1 TCCACGACTTAGTGGCATCTCTTCTCTAAGTCCACAACACTGTGGCACCTTTTCCTTCAAAG
* * * *
2306561 CCCACAACTTCGTGGCACCATCTCTT-T-TAAGTCCACAACTCTGTGGCACCCTTTT
1 TCCACGACTTAGTGG---CATCTCTTCTCTAAGTCCACAACACTGTGGCA-CCTTTT
2306616 AAGTCTACAA
Statistics
Matches: 102, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
62 15 0.15
63 28 0.27
64 25 0.25
65 10 0.10
66 1 0.01
67 4 0.04
68 1 0.01
69 18 0.18
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.33
Consensus pattern (62 bp):
TCCACGACTTAGTGGCATCTCTTCTCTAAGTCCACAACACTGTGGCACCTTTTCCTTCAAAG
Found at i:2306605 original size:63 final size:63
Alignment explanation
Indices: 2306514--2306829 Score: 186
Period size: 61 Copynumber: 5.3 Consensus size: 63
2306504 GACTTAGTGG
* *
2306514 CATCTCTTCTCTAAGTCCACAACACTGTGGCACCTTTTCCTTTTAAGCCCACAACTTCGTGGCAC
1 CATCTCTT-T-TAAGTCCACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTTCGTGGCAC
* * *
2306579 CATCTCTTTTAAGTCCACAACTCTGTGGCA-C----CCTTTTAAGTCTACAAC-TCTATTGCA-
1 CATCTCTTTTAAGTCCACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTTC-GTGGCAC
* * *
2306636 C--CT-TTTTAATTCTACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCATAACTTCGTGGCA-
1 CATCTCTTTTAAGTCCACAACTCTGTGGCACC-TTTT-CCTTTTAAGTCCACAACTTCGTGGCAC
* * * * * *
2306697 C--CT-ATTTAACTCCACAACTCCGGGGTACC---T--TTTTAAGTCCACAAC-TCTATGGCA-
1 CATCTCTTTTAAGTCCACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTTC-GTGGCAC
* * *
2306751 C--CT-TTTTAAG-CAAACAACTCTGTGACACCTTTTTCCCTTTTAAGTCCAAAACTTCGT-G-A
1 CATCTCTTTTAAGTC-CACAACTCTGTGGCACC-TTTT-CCTTTTAAGTCCACAACTTCGTGGCA
2306810 -
63 C
*
2306810 CA-CTTTTTTAAGTCCACAAC
1 CATCTCTTTTAAGTCCACAAC
2306830 CCCATGGTAC
Statistics
Matches: 200, Mismatches: 29, Indels: 48
0.72 0.10 0.17
Matches are distributed among these distances:
53 3 0.01
54 61 0.31
55 3 0.01
57 4 0.02
58 20 0.10
59 2 0.01
60 3 0.01
61 69 0.34
62 6 0.03
63 20 0.10
64 1 0.00
65 8 0.04
ACGTcount: A:0.24, C:0.30, G:0.11, T:0.34
Consensus pattern (63 bp):
CATCTCTTTTAAGTCCACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTTCGTGGCAC
Found at i:2306625 original size:27 final size:27
Alignment explanation
Indices: 2306525--2306899 Score: 236
Period size: 27 Copynumber: 13.0 Consensus size: 27
2306515 ATCTCTTCTC
*
2306525 TAAGTCCACAACACTGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTCTGTGGCACC---T--TTT
*
2306557 TAAGCCCACAACT-TCGTGGCACCATCTCTTT
1 TAAGTCCACAACTCT-GTGGCA-C--CT-TTT
*
2306588 TAAGTCCACAACTCTGTGGCACCCTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
* * *
2306615 TAAGTCTACAACTCTATTGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
* *
2306642 TAATTCTACAACTCTGTGGCACCTTTTTCCCTTT
1 TAAGTCCACAACTCTGTGGCACC----T---TTT
* *
2306676 TAAGTCCATAACT-TCGTGGCACCTATT
1 TAAGTCCACAACTCT-GTGGCACCTTTT
* * * *
2306703 TAACTCCACAACTCCGGGGTACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
*
2306730 TAAGTCCACAACTCTATGGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
* *
2306757 TAAG-CAAACAACTCTGTGACACCTTTTTCCCTTT
1 TAAGTC-CACAACTCTGTGGCACC----T---TTT
* * *
2306791 TAAGTCCAAAACT-TCGTGACACTTTTT
1 TAAGTCCACAACTCT-GTGGCACCTTTT
* ** *
2306818 TAAGTCCACAACCCCATGGTACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
2306845 TAAGTCCACAACTCTGTGGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
* * *
2306872 TATGTCCATAACTCTGTGGCACTTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
2306899 T
1 T
2306900 TCCTTCAACT
Statistics
Matches: 272, Mismatches: 46, Indels: 55
0.73 0.12 0.15
Matches are distributed among these distances:
26 1 0.00
27 178 0.65
28 1 0.00
30 3 0.01
31 25 0.09
32 19 0.07
33 3 0.01
34 40 0.15
35 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.35
Consensus pattern (27 bp):
TAAGTCCACAACTCTGTGGCACCTTTT
Found at i:2306698 original size:88 final size:88
Alignment explanation
Indices: 2306584--2306757 Score: 217
Period size: 88 Copynumber: 2.0 Consensus size: 88
2306574 GGCACCATCT
* * * ** *
2306584 CTTTTAAGTCCACAACTCTGTGGCACCCT-TTTAAGTCTACAACTCTATTGCACCTTTTTAATTC
1 CTTTTAAGTCCACAACTCTGTGGCA-CCTATTTAACTCCACAACTCCAGGGCACCTTTTTAAGTC
* *
2306648 TACAACTCTGTGGCACCTTTTTCC
65 CACAACTCTATGGCACCTTTTTCC
* * *
2306672 CTTTTAAGTCCATAACT-TCGTGGCACCTATTTAACTCCACAACTCCGGGGTACCTTTTTAAGTC
1 CTTTTAAGTCCACAACTCT-GTGGCACCTATTTAACTCCACAACTCCAGGGCACCTTTTTAAGTC
2306736 CACAACTCTATGGCACCTTTTT
65 CACAACTCTATGGCACCTTTTT
2306758 AAGCAAACAA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 4 0.05
88 69 0.95
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.37
Consensus pattern (88 bp):
CTTTTAAGTCCACAACTCTGTGGCACCTATTTAACTCCACAACTCCAGGGCACCTTTTTAAGTCC
ACAACTCTATGGCACCTTTTTCC
Found at i:2306741 original size:115 final size:115
Alignment explanation
Indices: 2306532--2306950 Score: 454
Period size: 115 Copynumber: 3.6 Consensus size: 115
2306522 CTCTAAGTCC
* * *
2306532 ACAACACTGTGGCACC-TTTT-CCTTTTAAGCCCACAACTTCGTGGCACCATCTCTTTTAAGTCC
1 ACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCAAAACTTCGTGGCA-C--CT-TTTTAAGTCC
* * * * * *
2306595 ACAACTCTGTGGCACCCTTTTAAGTCTACAACTCTATTGCACCTTTTTAATTCT
62 ACAACTCCGTGGTACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTAATTCA
* * *
2306649 ACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCATAACTTCGTGGCACCTATTTAACTCCACAA
1 ACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCAAAACTTCGTGGCACCTTTTTAAGTCCACAA
* *
2306714 CTCCGGGGTACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTAA-GCAA
66 CTCCGTGGTACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTAATTC-A
* * *
2306764 ACAACTCTGTGACACCTTTTTCCCTTTTAAGTCCAAAACTTCGTGACACTTTTTTAAGTCCACAA
1 ACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCAAAACTTCGTGGCACCTTTTTAAGTCCACAA
* * * *
2306829 CCCCATGGTACCTTTTTAAGTCCACAACTCTGTGGCACCTTTTT-ATGTCC
66 CTCCGTGGTACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTAAT-TCA
* * * * * * * * * *
2306879 ATAACTCTGTGGCACTTTTTTTCC-TTCAACTCCACAACTCCGTGGGATCC-TTTTATGTCCACT
1 ACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCAAAACTTCGTGGCA-CCTTTTTAAGTCCACA
2306942 ACTCCGTGG
65 ACTCCGTGG
2306951 CACCCTTCAA
Statistics
Matches: 256, Mismatches: 40, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
114 37 0.14
115 172 0.67
116 3 0.01
117 15 0.06
118 5 0.02
119 24 0.09
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (115 bp):
ACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCAAAACTTCGTGGCACCTTTTTAAGTCCACAA
CTCCGTGGTACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTAATTCA
Found at i:2306793 original size:88 final size:88
Alignment explanation
Indices: 2306701--2306872 Score: 220
Period size: 88 Copynumber: 2.0 Consensus size: 88
2306691 GTGGCACCTA
* ** * *
2306701 TTTAACTCCACAACTCCGGGGTACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTAAG-CAAA
1 TTTAACTCCAAAACTCCGGGACACCTTTTTAAGTCCACAACCCCATGGCACCTTTTTAAGTC-AA
2306765 CAACTCTGTGACACCTTTTTCCCT
65 CAACTCTGTGACACCTTTTTCCCT
* * * * * *
2306789 TTTAAGTCCAAAACTTCGTGACACTTTTTTAAGTCCACAACCCCATGGTACCTTTTTAAGTCCAC
1 TTTAACTCCAAAACTCCGGGACACCTTTTTAAGTCCACAACCCCATGGCACCTTTTTAAGTCAAC
*
2306854 AACTCTGTGGCACCTTTTT
66 AACTCTGTGACACCTTTTT
2306873 ATGTCCATAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 70 0.99
89 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (88 bp):
TTTAACTCCAAAACTCCGGGACACCTTTTTAAGTCCACAACCCCATGGCACCTTTTTAAGTCAAC
AACTCTGTGACACCTTTTTCCCT
Found at i:2306909 original size:25 final size:28
Alignment explanation
Indices: 2306838--2306910 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 28
2306828 ACCCCATGGT
*
2306838 ACCTTTTTAAGTCCA-CAACTCTGTGGC
1 ACCTTTTTATGTCCATCAACTCTGTGGC
2306865 ACCTTTTTATGTCCAT-AACTCTGTGGC
1 ACCTTTTTATGTCCATCAACTCTGTGGC
*
2306892 A-CTTTTT-T-TCCTTCAACTC
1 ACCTTTTTATGTCCATCAACTC
2306911 CACAACTCCG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.10
25 6 0.14
26 6 0.14
27 26 0.62
ACGTcount: A:0.19, C:0.29, G:0.11, T:0.41
Consensus pattern (28 bp):
ACCTTTTTATGTCCATCAACTCTGTGGC
Found at i:2307185 original size:27 final size:27
Alignment explanation
Indices: 2307147--2307475 Score: 137
Period size: 27 Copynumber: 11.5 Consensus size: 27
2307137 GGCACCTTCT
*
2307147 CCTTTTAAGTCCATAACTCTATGGCAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
** *
2307174 CCTTTTAAGTCCACAACTCCGTGGTAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
* * *
2307201 CTTTTTAAGTCCACAACTTTGTGGCAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
* *
2307228 CTTTTTGTCTTTTAAGTCCAAAACT-TCATGGCAT
1 C-------CTTTTAAGTCCACAACTCT-ATGGCAC
** *
2307262 TTTTTTAAGTCCCCAACTCTATGGCAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
* *
2307289 CTTTTTAAGTCC-CTAACTCTATAGCAC
1 CCTTTTAAGTCCAC-AACTCTATGGCAC
* * * *
2307316 CTTTTTATGTACACAACTCTGTGGCACATTTTTC
1 CCTTTTAAGTCCACAACTCTATGG--CA-----C
*
2307350 CCTTTTAAGTCCACAACTCTGTGGCA-
1 CCTTTTAAGTCCACAACTCTATGGCAC
* * *
2307376 CTTTTTCAAGTCCATAACTCCAT-GCAAC
1 CCTTTT-AAGTCCACAACTCTATGGC-AC
* * * *
2307404 CTTTTTCCTTTAAGTCCACAACTCTGTGGTAT
1 C-----CTTTTAAGTCCACAACTCTATGGCAC
* * *
2307436 CC-TTTAAGTCCATAACTCTGTGCCAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
**
2307462 CCTTCAAAGTCCAC
1 CCTTTTAAGTCCAC
2307476 GACTTAGTGC
Statistics
Matches: 230, Mismatches: 44, Indels: 56
0.70 0.13 0.17
Matches are distributed among these distances:
26 30 0.13
27 131 0.57
28 3 0.01
29 2 0.01
32 17 0.07
33 5 0.02
34 42 0.18
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCTATGGCAC
Found at i:2307270 original size:61 final size:61
Alignment explanation
Indices: 2307175--2307427 Score: 177
Period size: 61 Copynumber: 4.3 Consensus size: 61
2307165 CTATGGCACC
* * * * *
2307175 CTTTTAAGTCCACAACTCCGTGGTACCTTTTTAAGTCCACAACTTTGTGGCACCTTTTTGT
1 CTTTTAAGTCCAAAACTCCATGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTGT
* ** *
2307236 CTTTTAAGTCCAAAACTTCATGGCATTTTTTTAAGTCCCCAACTCTATGGCACC------T
1 CTTTTAAGTCCAAAACTCCATGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTGT
** * * * * * * **
2307291 -TTTTAAGTCCCTAACTCTATAGCACCTTTTTATGTACACAACTCTGTGGCACATTTTTCC
1 CTTTTAAGTCCAAAACTCCATGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTGT
* ** * *
2307351 CTTTTAAGTCCACAACTCTGTGGCA-CTTTTTCAAGTCCATAACTCCAT-GCAACC-TTTT-T
1 CTTTTAAGTCCAAAACTCCATGGCACCTTTTT-AAGTCCACAACTCTATGGC-ACCTTTTTGT
* *
2307410 CCTTTAAGTCCACAACTC
1 CTTTTAAGTCCAAAACTC
2307428 TGTGGTATCC
Statistics
Matches: 149, Mismatches: 34, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
54 41 0.28
55 1 0.01
59 17 0.11
60 12 0.08
61 78 0.52
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (61 bp):
CTTTTAAGTCCAAAACTCCATGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTTTGT
Found at i:2307271 original size:88 final size:86
Alignment explanation
Indices: 2307117--2307300 Score: 226
Period size: 88 Copynumber: 2.1 Consensus size: 86
2307107 TCCTTTTTCC
*
2307117 TTTTAAGTCCACAACTGCGTGGCACCTTCTCCTTTTAAGTCCATAACTCTATGGCACCCTTTTAA
1 TTTTAAGTCCACAACTGCGTGGCACCTTCTCCTTTTAAGTCCAAAACTCTATGGCACCCTTTTAA
* *
2307182 GTCCACAACTCCGTGGTACCT
66 GTCCACAACTCCATGGCACCT
** * * ***
2307203 TTTTAAGTCCACAACTTTGTGGCACCTTTTTGTCTTTTAAGTCCAAAACT-TCATGGCATTTTTT
1 TTTTAAGTCCACAACTGCGTGGCACC-TTCT-CCTTTTAAGTCCAAAACTCT-ATGGCACCCTTT
* *
2307267 TAAGTCCCCAACTCTATGGCACCT
63 TAAGTCCACAACTCCATGGCACCT
2307291 TTTTAAGTCC
1 TTTTAAGTCC
2307301 CTAACTCTAT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 24 0.29
87 4 0.05
88 55 0.66
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.37
Consensus pattern (86 bp):
TTTTAAGTCCACAACTGCGTGGCACCTTCTCCTTTTAAGTCCAAAACTCTATGGCACCCTTTTAA
GTCCACAACTCCATGGCACCT
Found at i:2307316 original size:88 final size:88
Alignment explanation
Indices: 2307148--2307321 Score: 217
Period size: 88 Copynumber: 2.0 Consensus size: 88
2307138 GCACCTTCTC
* * *
2307148 CTTTTAAGTCCATAACTCTATGGCACCCTTTTAAGTCCACAACTCCGTGGTACCTTTTTAAGTCC
1 CTTTTAAGTCCAAAACTCTATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTTAAGTCC
* * *
2307213 ACAACTTTGTGGCACCTTTTTGT
66 ACAACTCTATAGCACCTTTTTGT
*** * *
2307236 CTTTTAAGTCCAAAACT-TCATGGCATTTTTTTAAGTCCCCAACTCTATGGCACCTTTTTAAGTC
1 CTTTTAAGTCCAAAACTCT-ATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTTAAGTC
2307300 C-CTAACTCTATAGCACCTTTTT
65 CAC-AACTCTATAGCACCTTTTT
2307322 ATGTACACAA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 2 0.03
88 71 0.97
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (88 bp):
CTTTTAAGTCCAAAACTCTATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTTAAGTCC
ACAACTCTATAGCACCTTTTTGT
Found at i:2307365 original size:34 final size:33
Alignment explanation
Indices: 2307318--2307382 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
2307308 TATAGCACCT
*
2307318 TTTTATGTACACAACTCTGTGGCACATTTTTCCC
1 TTTTAAGTACACAACTCTGTGGCAC-TTTTTCCC
*
2307352 TTTTAAGTCCACAACTCTGTGGCACTTTTTC
1 TTTTAAGTACACAACTCTGTGGCACTTTTTC
2307383 AAGTCCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 6 0.21
34 23 0.79
ACGTcount: A:0.20, C:0.26, G:0.12, T:0.42
Consensus pattern (33 bp):
TTTTAAGTACACAACTCTGTGGCACTTTTTCCC
Found at i:2307409 original size:115 final size:114
Alignment explanation
Indices: 2307110--2307409 Score: 320
Period size: 115 Copynumber: 2.6 Consensus size: 114
2307100 CTTATGGTCC
2307110 TTTTTCCTTTTAAGTCCACAACTGC-GTGGCACCTTCTCCTTTTAAGTCCATAACTCTATGGCAC
1 TTTTTCCTTTTAAGTCCACAACT-CTGTGGCA-C-T-T--TTTTAAGTCCATAACTCTATGGCAC
* * * * * * *
2307174 CCTTTTAAGTCCACAACTCCGTGGTACCTTTTTAAGTCCACAACTTTGTGGCACC
60 CTTTTTAAGTCCACAACTCCATAGCACCTTTTTAAGTACACAACTCTGTGGCACA
* * * * **
2307229 TTTTTGTCTTTTAAGTCCAAAACT-TCATGGCATTTTTTTAAGTCCCCAACTCTATGGCACCTTT
1 TTTTT-CCTTTTAAGTCCACAACTCT-GTGGCACTTTTTTAAGTCCATAACTCTATGGCACCTTT
* *
2307293 TTAAGTCC-CTAACTCTATAGCACCTTTTTATGTACACAACTCTGTGGCACA
64 TTAAGTCCAC-AACTCCATAGCACCTTTTTAAGTACACAACTCTGTGGCACA
* *
2307344 TTTTTCCCTTTTAAGTCCACAACTCTGTGGCACTTTTTCAAGTCCATAACTCCAT-GCAACCTTT
1 TTTTT-CCTTTTAAGTCCACAACTCTGTGGCACTTTTTTAAGTCCATAACTCTATGGC-ACCTTT
2307408 TT
64 TT
2307410 CCTTTAAGTC
Statistics
Matches: 151, Mismatches: 24, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
114 3 0.02
115 119 0.79
116 1 0.01
117 1 0.01
118 1 0.01
119 5 0.03
120 21 0.14
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (114 bp):
TTTTTCCTTTTAAGTCCACAACTCTGTGGCACTTTTTTAAGTCCATAACTCTATGGCACCTTTTT
AAGTCCACAACTCCATAGCACCTTTTTAAGTACACAACTCTGTGGCACA
Found at i:2307465 original size:26 final size:26
Alignment explanation
Indices: 2307410--2307475 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
2307400 CAACCTTTTT
** *
2307410 CCTTTAAGTCCACAACTCTGTGGTAT
1 CCTTTAAGTCCACAACTCTGTGCCAC
*
2307436 CCTTTAAGTCCATAACTCTGTGCCAC
1 CCTTTAAGTCCACAACTCTGTGCCAC
*
2307462 CCTTCAAAGTCCAC
1 CCTT-TAAGTCCAC
2307476 GACTTAGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 26 0.79
27 7 0.21
ACGTcount: A:0.24, C:0.33, G:0.12, T:0.30
Consensus pattern (26 bp):
CCTTTAAGTCCACAACTCTGTGCCAC
Found at i:2307604 original size:32 final size:32
Alignment explanation
Indices: 2307568--2307649 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
2307558 CTCTTTTCTT
2307568 AGTCCATAACTCTGTGGCT-CATTTTCCTTTTA
1 AGTCCATAACTCTGTGGCTAC-TTTTCCTTTTA
* *
2307600 AGTCCATAACTCCGAGG-TAGCTTTTCCTTTTA
1 AGTCCATAACTCTGTGGCTA-CTTTTCCTTTTA
*
2307632 AGTCCACAACTCTGTGGC
1 AGTCCATAACTCTGTGGC
2307650 ACCCTTTCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
31 1 0.02
32 40 0.95
33 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.37
Consensus pattern (32 bp):
AGTCCATAACTCTGTGGCTACTTTTCCTTTTA
Found at i:2307663 original size:27 final size:28
Alignment explanation
Indices: 2307625--2307772 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 28
2307615 GGTAGCTTTT
2307625 CCTTTTAAGTCCACAACTCT-GTGGCAC
1 CCTTTTAAGTCCACAACTCTCGTGGCAC
*
2307652 CCTTTCAAGTCCACAACT-TCGTGGCAC
1 CCTTTTAAGTCCACAACTCTCGTGGCAC
* * *
2307679 CTTTTTAAGTCCATAACTCTC-TGCCACC
1 CCTTTTAAGTCCACAACTCTCGTGGCA-C
2307707 TTTTTTCCTTTTAAGTCCACAACT-TCGTGGCAC
1 ------CCTTTTAAGTCCACAACTCTCGTGGCAC
* * *
2307740 CTTTTTAAGTCTACAACTCT-ATGGCAC
1 CCTTTTAAGTCCACAACTCTCGTGGCAC
*
2307767 CTTTTT
1 CCTTTT
2307773 CCTTTAAGTC
Statistics
Matches: 99, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.01
27 71 0.72
28 4 0.04
33 3 0.03
34 20 0.20
ACGTcount: A:0.21, C:0.31, G:0.11, T:0.36
Consensus pattern (28 bp):
CCTTTTAAGTCCACAACTCTCGTGGCAC
Found at i:2307722 original size:34 final size:34
Alignment explanation
Indices: 2307681--2307745 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
2307671 CGTGGCACCT
*
2307681 TTTTAAGTCCATAACTCTC-TGCCACCTTTTTTCC
1 TTTTAAGTCCACAACT-TCGTGCCACCTTTTTTCC
*
2307715 TTTTAAGTCCACAACTTCGTGGCACCTTTTT
1 TTTTAAGTCCACAACTTCGTGCCACCTTTTT
2307746 AAGTCTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 2 0.07
34 26 0.93
ACGTcount: A:0.18, C:0.29, G:0.09, T:0.43
Consensus pattern (34 bp):
TTTTAAGTCCACAACTTCGTGCCACCTTTTTTCC
Found at i:2307808 original size:59 final size:60
Alignment explanation
Indices: 2307652--2307830 Score: 209
Period size: 61 Copynumber: 3.0 Consensus size: 60
2307642 TCTGTGGCAC
* * * *
2307652 CCTTTCAAGTCCACAACTTCGTGGCACCTTTTTAAGTCCATAACTCTCTGCCACCTTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTTAAGTCCACAACTCTATGGCACC-TTTTT
*
2307713 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTTAAGTCTACAACTCTATGGCACCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTTT
*** * * * * *
2307773 CC-TTTAAGTCTGTAATTTGGTGGCATCC-TTTTAAGTCCAGAACTTTATTGCACCTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCA-CCTTTTTAAGTCCACAACTCTATGGCACCTTTT
2307831 CAAGTCTACG
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
59 44 0.43
60 9 0.09
61 50 0.49
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (60 bp):
CCTTTTAAGTCCACAACTTCGTGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTTT
Found at i:2307947 original size:33 final size:33
Alignment explanation
Indices: 2307877--2307953 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
2307867 TACTATTTAA
*
2307877 TGGCATCC-TTTTTCTTCCAAGTCCACGACTCAT
1 TGGCA-CCTTTTTTCTTCCAAGTCCACGACTCAG
* * *
2307910 TGGCACCTTTTTTCTTCCAAGTTCATGACTTAG
1 TGGCACCTTTTTTCTTCCAAGTCCACGACTCAG
*
2307943 TGGCATCTTTT
1 TGGCACCTTTT
2307954 ATCTAAGTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
32 2 0.05
33 36 0.95
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (33 bp):
TGGCACCTTTTTTCTTCCAAGTCCACGACTCAG
Found at i:2307999 original size:32 final size:32
Alignment explanation
Indices: 2307957--2308316 Score: 226
Period size: 27 Copynumber: 11.7 Consensus size: 32
2307947 ATCTTTTATC
**
2307957 TAAGTCCACAACAACGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* * ** *
2307989 TAAGTTCACAACTCCGCGAAACTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* *
2308021 TAA-TCCATAACTCCGTAGCACCTTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACC--TTTTCCTTT
*
2308054 TAAGTTCACAACTCCGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* *
2308086 TAAGTCCATAACTCTGTGGCACCTTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACC--TTTTCCTTT
*** *
2308120 TAAGTCCACAACTTTATGGCA---TAT--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
*
2308147 TAACTCCACAAC-CCTGTGGCACCTTTTTCCCTTT
1 TAAGTCCACAACTCC-GTGGCACC-TTTT-CCTTT
* * *
2308181 TAAGTCCATAACTCCGTCGTA-C--TT--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
*
2308208 TATGTCCACAACTCCGTGGCACC---T--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* * *
2308235 TAAGTCCACAACTCTGTGGCACATTTTTCC-GT
1 TAAGTCCACAACTCCGTGGCAC-CTTTTCCTTT
* * *
2308267 TAAGTCTATAACTCTGTGGCA---TTT--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* *
2308294 TAAGTCCACAGCTCTGTGGCACC
1 TAAGTCCACAACTCCGTGGCACC
2308317 CTTCAAAGTC
Statistics
Matches: 257, Mismatches: 47, Indels: 51
0.72 0.13 0.14
Matches are distributed among these distances:
27 82 0.32
28 4 0.02
29 2 0.01
30 2 0.01
31 15 0.06
32 77 0.30
33 13 0.05
34 60 0.23
35 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.38
Consensus pattern (32 bp):
TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
Found at i:2308076 original size:34 final size:33
Alignment explanation
Indices: 2307957--2308287 Score: 224
Period size: 32 Copynumber: 10.6 Consensus size: 33
2307947 ATCTTTTATC
**
2307957 TAAGTCCACAACAACGTGGCACC-TTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* * * *
2307989 TAAGTTCACAACTCCG-CGAAACTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2308021 TAA-TCCATAACTCCGTAGCACCTTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACC-TTTTTCCTTT
*
2308054 TAAGTTCACAACTCCGTGGCACC-TTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* *
2308086 TAAGTCCATAACTCTGTGGCACCTTTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACC-TTTTTCCTTT
*** *
2308120 TAAGTCCACAACTTTATGGCA----TAT--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
*
2308147 TAACTCCACAAC-CCTGTGGCACCTTTTTCCCTTT
1 TAAGTCCACAACTCC-GTGGCACCTTTTT-CCTTT
* * *
2308181 TAAGTCCATAACTCCGTCGTA-C---TT--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
*
2308208 TATGTCCACAACTCCGTGGCACC----T--TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* * *
2308235 TAAGTCCACAACTCTGTGGCACATTTTTCC-GT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
* * *
2308267 TAAGTCTATAACTCTGTGGCA
1 TAAGTCCACAACTCCGTGGCA
2308288 TTTTTTTAAG
Statistics
Matches: 237, Mismatches: 40, Indels: 44
0.74 0.12 0.14
Matches are distributed among these distances:
27 63 0.27
28 1 0.00
29 2 0.01
30 2 0.01
31 16 0.07
32 77 0.32
33 14 0.06
34 60 0.25
35 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (33 bp):
TAAGTCCACAACTCCGTGGCACCTTTTTCCTTT
Found at i:2308116 original size:66 final size:64
Alignment explanation
Indices: 2307972--2308235 Score: 240
Period size: 61 Copynumber: 4.2 Consensus size: 64
2307962 CCACAACAAC
* * ** *
2307972 GTGGCACC--TTTTCCTTTTAAGTTCACAACTCCGCGAAACTTTTTCCTTTTAATCCATAACTCC
1 GTGGCACCTTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC-TTTTCCTTTTAATCCATAACTCT
* *
2308035 GTAGCACCTTTTTTCCTTTTAAGTTCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCATAACTC
1 GTGGCACCTTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-CTTTTCCTTTTAA-TCCATAACTC
2308100 T
64 T
*** * * *
2308101 GTGGCACCTTTTTTCCTTTTAAGTCCACAACTTTATGGCA--TAT--TTTTAACTCCACAACCCT
1 GTGGCACCTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTCCTTTTAA-TCCATAACTCT
* * * * * * * *
2308162 GTGGCACCTTTTTCCCTTTTAAGTCCATAACTCCGTCGTACTTTT--TTAT-GTCCACAACTCC
1 GTGGCACCTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTCCTTTTAATCCATAACTCT
2308223 GTGGCACCTTTTT
1 GTGGCACCTTTTT
2308236 AAGTCCACAA
Statistics
Matches: 169, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
61 70 0.41
63 14 0.08
65 39 0.23
66 46 0.27
ACGTcount: A:0.20, C:0.29, G:0.11, T:0.40
Consensus pattern (64 bp):
GTGGCACCTTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTCCTTTTAATCCATAACTCT
Found at i:2308208 original size:61 final size:61
Alignment explanation
Indices: 2307942--2308235 Score: 215
Period size: 61 Copynumber: 4.7 Consensus size: 61
2307932 TCATGACTTA
* *
2307942 GTGGCATCTTTTATCTAAGTCCACAACAAC-GTGGCACC--TTTTCCTTTTAAGTTCACAACTCC
1 GTGGCA-CTTTT-T-TAAGTCCACAAC-CCTGTGGCACCTTTTTTCCTTTTAAGTCCACAACTCC
* ** * * *
2308004 GCGAAACTTTTTCCTTTTAA-TCCATAACTCC-GTAGCACCTTTTTTCCTTTTAAGTTCACAACT
1 GTGGCAC---TT--TTTTAAGTCCACAAC-CCTGTGGCACCTTTTTTCCTTTTAAGTCCACAACT
2308067 CC
60 CC
* * *
2308069 GTGGCACCTTTTCCTTTTAAGTCCATAACTCTGTGGCACCTTTTTTCCTTTTAAGTCCACAACTT
1 GTGGCA-C--TT--TTTTAAGTCCACAACCCTGTGGCACCTTTTTTCCTTTTAAGTCCACAACTC
*
2308134 T
61 C
* * * *
2308135 ATGGCA-TATTTTTAACTCCACAACCCTGTGGCACCTTTTTCCCTTTTAAGTCCATAACTCC
1 GTGGCACT-TTTTTAAGTCCACAACCCTGTGGCACCTTTTTTCCTTTTAAGTCCACAACTCC
* * *
2308196 GTCGTACTTTTTTATGTCCACAACTCC-GTGGCACCTTTTT
1 GTGGCACTTTTTTAAGTCCACAAC-CCTGTGGCACCTTTTT
2308236 AAGTCCACAA
Statistics
Matches: 191, Mismatches: 28, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
61 76 0.40
62 7 0.04
63 16 0.08
64 5 0.03
65 41 0.21
66 46 0.24
ACGTcount: A:0.21, C:0.29, G:0.11, T:0.39
Consensus pattern (61 bp):
GTGGCACTTTTTTAAGTCCACAACCCTGTGGCACCTTTTTTCCTTTTAAGTCCACAACTCC
Found at i:2308292 original size:30 final size:31
Alignment explanation
Indices: 2308234--2308312 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 31
2308224 TGGCACCTTT
2308234 TTAAGTCCACAACTCTGTGGCACATTTTTCCG
1 TTAAGTCCACAACTCTGTGG-ACATTTTTCCG
* *
2308266 TTAAGTCTATAACTCTGTGG-CATTTTT---
1 TTAAGTCCACAACTCTGTGGACATTTTTCCG
*
2308293 TTAAGTCCACAGCTCTGTGG
1 TTAAGTCCACAACTCTGTGG
2308313 CACCCTTCAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
27 17 0.40
30 7 0.17
32 18 0.43
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.38
Consensus pattern (31 bp):
TTAAGTCCACAACTCTGTGGACATTTTTCCG
Found at i:2308316 original size:86 final size:88
Alignment explanation
Indices: 2308117--2308316 Score: 242
Period size: 88 Copynumber: 2.3 Consensus size: 88
2308107 CCTTTTTTCC
* * ** * *
2308117 TTTTAAGTCCACAACTTTATGGCATATTTTTAACTCCACAACCCTGTGGCACCTTTTTCCCTTTT
1 TTTTAAGTCCACAACTCTGTGGCACCTTTTTAACTCCACAACCCTGTGGCACATTTTTCCCTGTT
*
2308182 AAGTCCATAACTCCGTCGTACTT
66 AAGTCCATAACTCCGTCGCACTT
* * * *
2308205 TTTTATGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGTGGCACATTTTT-CC-GTT
1 TTTTAAGTCCACAACTCTGTGGCACCTTTTTAACTCCACAACCCTGTGGCACATTTTTCCCTGTT
* * * *
2308268 AAGTCTATAACTCTGTGGCATTT
66 AAGTCCATAACTCCGTCGCACTT
*
2308291 TTTTAAGTCCACAGCTCTGTGGCACC
1 TTTTAAGTCCACAACTCTGTGGCACC
2308317 CTTCAAAGTC
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
86 43 0.46
87 2 0.02
88 49 0.52
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.38
Consensus pattern (88 bp):
TTTTAAGTCCACAACTCTGTGGCACCTTTTTAACTCCACAACCCTGTGGCACATTTTTCCCTGTT
AAGTCCATAACTCCGTCGCACTT
Found at i:2308341 original size:86 final size:88
Alignment explanation
Indices: 2308151--2308328 Score: 216
Period size: 86 Copynumber: 2.0 Consensus size: 88
2308141 TATTTTTAAC
* * * * *
2308151 TCCACAACCCTGTGGCACCTTTTTCCCTTTTAAGTCCATAACTCCGTCGTACTTTTTTATGTCCA
1 TCCACAACTCTGTGGCACATTTTTCCCTGTTAAGTCCATAACTCCGTCGCACTTTTTTAAGTCCA
* **
2308216 CAACTCCGTGGCACCTTTTTAAG
66 CAACTCCGTGGCACCCTTCAAAG
* * * *
2308239 TCCACAACTCTGTGGCACATTTTT-CC-GTTAAGTCTATAACTCTGTGGCATTTTTTTAAGTCCA
1 TCCACAACTCTGTGGCACATTTTTCCCTGTTAAGTCCATAACTCCGTCGCACTTTTTTAAGTCCA
* *
2308302 CAGCTCTGTGGCACCCTTCAAAG
66 CAACTCCGTGGCACCCTTCAAAG
2308325 TCCA
1 TCCA
2308329 TGACTTAGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
86 52 0.68
87 2 0.03
88 22 0.29
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (88 bp):
TCCACAACTCTGTGGCACATTTTTCCCTGTTAAGTCCATAACTCCGTCGCACTTTTTTAAGTCCA
CAACTCCGTGGCACCCTTCAAAG
Found at i:2308373 original size:35 final size:33
Alignment explanation
Indices: 2308320--2308503 Score: 122
Period size: 33 Copynumber: 5.4 Consensus size: 33
2308310 TGGCACCCTT
*
2308320 CAAAGTCCATGACTTAGTGGCATCTTTGTACTTC
1 CAAAGTCCACGACTTAGTGGCATCTTTGTAC-TC
* * * * *
2308354 CAAAAGTCCACGACGTAGTGGTAACTTTTTTCTC
1 C-AAAGTCCACGACTTAGTGGCATCTTTGTACTC
* * *
2308388 CCAAGTCCACGACTTAGTGGCATCTTTTTTCTC
1 CAAAGTCCACGACTTAGTGGCATCTTTGTACTC
* ** *
2308421 CCAAGTCCACGACCCAAGT-GCATCCTTT-TTCTTC
1 CAAAGTCCACGA-CTTAGTGGCAT-CTTTGTAC-TC
* * * *
2308455 TAAAAGTTCGCGACTTAGTGGCATCCTTT-TTCTC
1 -CAAAGTCCACGACTTAGTGGCAT-CTTTGTACTC
2308489 TCAAAGTCCACGACT
1 -CAAAGTCCACGACT
2308504 CAGAGCATCT
Statistics
Matches: 123, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
33 47 0.38
34 32 0.26
35 44 0.36
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (33 bp):
CAAAGTCCACGACTTAGTGGCATCTTTGTACTC
Found at i:2308398 original size:33 final size:33
Alignment explanation
Indices: 2308357--2308433 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
2308347 GTACTTCCAA
*
2308357 AAGTCCACGACGTAGTGGTAACTTTTTTCTCCC
1 AAGTCCACGACGTAGTGGCAACTTTTTTCTCCC
* *
2308390 AAGTCCACGACTTAGTGGCATCTTTTTTCTCCC
1 AAGTCCACGACGTAGTGGCAACTTTTTTCTCCC
2308423 AAGTCCACGAC
1 AAGTCCACGAC
2308434 CCAAGTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (33 bp):
AAGTCCACGACGTAGTGGCAACTTTTTTCTCCC
Found at i:2308560 original size:32 final size:32
Alignment explanation
Indices: 2308520--2308672 Score: 154
Period size: 32 Copynumber: 4.8 Consensus size: 32
2308510 ATCTCATATC
2308520 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
*
2308552 TAAATCCACAACTCCGTGGCACCTTTTTCCCTTT
1 TAAGTCCACAACTCCGTGGCACC-TTTT-CCTTT
* ** *
2308586 TAAGTCCATAACTCTATGGCACC---T--ATT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* *
2308613 TAAGTCTACAACTCCGTGGCACCTTTTTCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
* * *
2308645 TAAGTCTACAACTTCATGGCATCCTTTT
1 TAAGTCCACAACTCCGTGGCA-CCTTTT
2308673 AAGTCCACAA
Statistics
Matches: 100, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
27 21 0.21
30 2 0.02
32 43 0.43
33 10 0.10
34 24 0.24
ACGTcount: A:0.22, C:0.30, G:0.11, T:0.37
Consensus pattern (32 bp):
TAAGTCCACAACTCCGTGGCACCTTTTCCTTT
Found at i:2308625 original size:27 final size:26
Alignment explanation
Indices: 2308581--2308684 Score: 75
Period size: 27 Copynumber: 3.7 Consensus size: 26
2308571 CACCTTTTTC
*
2308581 CCTTTTAAGTCCATAACTCTATGGCA
1 CCTTTTAAGTCCACAACTCTATGGCA
* **
2308607 CCTATTTAAGTCTACAACTCCGTGGCA
1 CCT-TTTAAGTCCACAACTCTATGGCA
*
2308634 CCTTTTTCTTTTAAGTCTACAACT-TCATGGCA
1 -C-----CTTTTAAGTCCACAACTCT-ATGGCA
2308666 TCCTTTTAAGTCCACAACT
1 -CCTTTTAAGTCCACAACT
2308685 TCACGACACC
Statistics
Matches: 62, Mismatches: 8, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
26 3 0.05
27 35 0.56
28 1 0.02
32 21 0.34
33 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (26 bp):
CCTTTTAAGTCCACAACTCTATGGCA
Found at i:2308697 original size:59 final size:60
Alignment explanation
Indices: 2308546--2308684 Score: 194
Period size: 59 Copynumber: 2.3 Consensus size: 60
2308536 TGGCACCTTT
* *
2308546 TCCTTTTAAATCCACAACTCCGTGGCACCTTTTTCCCTTTTAAGTCCATAACTCTATGGCA
1 TCCTTTTAAGTCCACAACTCCGTGGCACCTTTTT-CCTTTTAAGTCCACAACTCTATGGCA
* *
2308607 -CCTATTTAAGTCTACAACTCCGTGGCACCTTTTT-CTTTTAAGTCTACAACT-TCATGGCA
1 TCCT-TTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCT-ATGGCA
2308666 TCCTTTTAAGTCCACAACT
1 TCCTTTTAAGTCCACAACT
2308685 TCACGACACC
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
58 1 0.01
59 35 0.50
60 6 0.09
61 28 0.40
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.37
Consensus pattern (60 bp):
TCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCTATGGCA
Found at i:2308703 original size:27 final size:27
Alignment explanation
Indices: 2308641--2308704 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
2308631 GCACCTTTTT
* * * *
2308641 CTTTTAAGTCTACAACTTCATGGCATC
1 CTTTAAAGTCCACAACTTCACGACATC
*
2308668 CTTTTAAGTCCACAACTTCACGACA-C
1 CTTTAAAGTCCACAACTTCACGACATC
2308694 CTTTCAAAGTC
1 CTTT-AAAGTC
2308705 TACGACTCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (27 bp):
CTTTAAAGTCCACAACTTCACGACATC
Found at i:2308782 original size:35 final size:34
Alignment explanation
Indices: 2308698--2308820 Score: 119
Period size: 35 Copynumber: 3.7 Consensus size: 34
2308688 CGACACCTTT
* * *
2308698 CAAAGTCTACGACTCAGTGGCAT-C-TCTCCT-C
1 CAAAGTCCACGACTCAGTGGCATCCTTTTTCTCC
*
2308729 C-AAGTCCACGACTTAGTGGCATCCTTTTTCTTCC
1 CAAAGTCCACGACTCAGTGGCATCCTTTTTC-TCC
* * *
2308763 CAAAGTCCACAACTGAGTGGCATCTTTTTTCTCC
1 CAAAGTCCACGACTCAGTGGCATCCTTTTTCTCC
* * *
2308797 TAAAGCCCACGACTCAATGGCATC
1 CAAAGTCCACGACTCAGTGGCATC
2308821 TCTTATCTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
30 19 0.25
31 2 0.03
32 3 0.04
33 1 0.01
34 24 0.32
35 26 0.35
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (34 bp):
CAAAGTCCACGACTCAGTGGCATCCTTTTTCTCC
Found at i:2308818 original size:34 final size:35
Alignment explanation
Indices: 2308734--2308821 Score: 106
Period size: 34 Copynumber: 2.5 Consensus size: 35
2308724 TCCTCCAAGT
* * *
2308734 CCACGACTTAGTGGCATCCTTTTTCTTCCCAAAGT
1 CCACGACTCAGTGGCATCTTTTTTCTTCCCAAAGC
* * *
2308769 CCACAACTGAGTGGCATCTTTTTTC-TCCTAAAGC
1 CCACGACTCAGTGGCATCTTTTTTCTTCCCAAAGC
*
2308803 CCACGACTCAATGGCATCT
1 CCACGACTCAGTGGCATCT
2308822 CTTATCTAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 23 0.51
35 22 0.49
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.31
Consensus pattern (35 bp):
CCACGACTCAGTGGCATCTTTTTTCTTCCCAAAGC
Found at i:2308865 original size:32 final size:31
Alignment explanation
Indices: 2308828--2308903 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 31
2308818 ATCTCTTATC
*
2308828 TAAGTCCATAATTCCATGGCACCTTTTCCTTT
1 TAAGTCCACAATTCCATGGCACCTTTTCC-TT
* * *
2308860 TAAGTCCACAACTCCGTGGTACCTTTTCCTT
1 TAAGTCCACAATTCCATGGCACCTTTTCCTT
2308891 TAAGTCCACAATT
1 TAAGTCCACAATT
2308904 TTGTGGCATC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 14 0.36
32 25 0.64
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.37
Consensus pattern (31 bp):
TAAGTCCACAATTCCATGGCACCTTTTCCTT
Found at i:2308884 original size:26 final size:26
Alignment explanation
Indices: 2308855--2309024 Score: 151
Period size: 27 Copynumber: 6.2 Consensus size: 26
2308845 GGCACCTTTT
*
2308855 CCTTTTAAGTCCACAACTCCGTGGTA
1 CCTTTTAAGTCCACAACTCCGTGGCA
* **
2308881 CCTTTTCCTTTAAGTCCACAATTTTGTGGCA
1 CC---T--TTTAAGTCCACAACTCCGTGGCA
**
2308912 TCCTTTTAAGTCCACAACTTTGTGGCA
1 -CCTTTTAAGTCCACAACTCCGTGGCA
* **
2308939 CCCTTTTAACTCCACAACTCTTTGGCA
1 -CCTTTTAAGTCCACAACTCCGTGGCA
* *
2308966 CCTTTTTAAGTCCAAAACTCCATGGCA
1 CC-TTTTAAGTCCACAACTCCGTGGCA
* *
2308993 CCTTTTAAGTCCAAAACTCCTTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCA
2309019 CCTTTT
1 CCTTTT
2309025 TCCTTTAAGT
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
26 33 0.27
27 67 0.54
29 2 0.02
31 19 0.15
32 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (26 bp):
CCTTTTAAGTCCACAACTCCGTGGCA
Done.