Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold166
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2719372
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 17868 characters in sequence are not A, C, G, or T
File 14 of 18
Found at i:2309194 original size:35 final size:34
Alignment explanation
Indices: 2309083--2309245 Score: 149
Period size: 33 Copynumber: 4.9 Consensus size: 34
2309073 TGGCACCCTT
* *
2309083 CAAAGTCCACGACTTAGTGGCATCTCTTCTC-T-
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTCTTC
* ** * *
2309115 --AAGTCCAGGACTTGGTGCCATCTTTTTTCTTC
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTCTTC
2309147 C-AAGTCCACGACTCAGTGGCATCTTTTCTCTTC
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTCTTC
* * * * *
2309180 CAAAAGTCTACGACTTAGTGGTATC-TTTGTCTAC
1 C-AAAGTCCACGACTCAGTGGCATCTTTTCTCTTC
* *
2309214 CAAAGTCCACGACTCAGTAGAATCTTTTCTCT
1 CAAAGTCCACGACTCAGTGGCATCTTTTCTCT
2309246 AATTCCACAA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
30 24 0.23
31 1 0.01
33 47 0.45
34 14 0.13
35 19 0.18
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (34 bp):
CAAAGTCCACGACTCAGTGGCATCTTTTCTCTTC
Found at i:2309337 original size:418 final size:420
Alignment explanation
Indices: 2308727--2309597 Score: 1040
Period size: 427 Copynumber: 2.1 Consensus size: 420
2308717 GCATCTCTCC
* * *
2308727 TCCAAGTCCACGACTTAGTGGCATCCTTTTTCTTCCCAAAGTCCACAACTGAGTGGCATCTTTTT
1 TCCAAGTCCACGACTCAGTGGCAT-CTTTTTCTTCCAAAAGTCCACAACTGAGTGGCATCTTTTG
* * * * *
2308792 TCTCCTAAAGCCCACGACTCAATGGCATCTCTTATCTAAGTCCATAATTCCATGGCACCTTTTCC
65 TCTCCTAAAGCCCACGACTCAATAGAATCTCTTATCTAAGTCCACAACTCCAGGGCACCTTTTCC
* * *
2308857 TTTTAAGTCCACAACTCCGTGGTACCTTTTCCTTTAAGTCCACAATTTTGTGGCATCCTTTTAAG
130 TTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTAAGTCCACAACTTTGTGGCACCCTTTTAAG
** * ** *
2308922 TCCACAACTTTGTGGCACCCTTTTAACTCCACAACTCTTTGGCACC-T-TTTTAAGTCCAAAACT
195 TCCACAACCCTATGGCACCCTTTTAACTCCACAACTCCGTGACACCTTCTTTTAAGTCCAAAACT
* * *
2308985 CCATGGCA-CCTTTTAAGTCCAAAACTCCTTGGCACC-TTTTTCCTTTAAGTTCATAATTTTGTG
260 CCACGGCACCCTTTTAAGTCCAAAACTCCATGGCACCATTTTT-CTTTAAGTCCATAATTTTGTG
* * *
2309048 GCATCCTTTTAAGCCCACAACTCCATGGCACCCTTCAAAGTCCACGACTTAGTGGCATCTCTTCT
324 GCATCATTTTAAGCCCACAACTCCATAGCACCCTTCAAAGTCCACGACTTAGTGGCATATCTTCT
* ** *
2309113 CTAAGTCCAGGACTTGGTGCCATCTTTTTTCT
389 CCAAGTCCACAACTTAGTGCCATCTTTTTTCT
* * * *
2309145 TCCAAGTCCACGACTCAGTGGCATCTTTTCTCTTCCAAAAGTCTACGACTTAGTGGTATC-TTTG
1 TCCAAGTCCACGACTCAGTGGCATCTTTT-TCTTCCAAAAGTCCACAACTGAGTGGCATCTTTTG
* * * * * * **
2309209 TCTACC-AAAGTCCACGACTCAGTAGAATCTTTTCTCTAATTCCACAACTCTAGGGTGCCATTTT
65 TCT-CCTAAAGCCCACGACTCAATAGAATCTCTTATCTAAGTCCACAACTCCAGGGCACC-TTTT
* *
2309273 -CTTTTAAGTCCATAACTCCAG-GGCACCTTTTCCTTTTAAGTCCATAACTTTGTGGCACCCTTT
128 CCTTTTAAGTCCACAACTCC-GTGGCACCTTTTCC-TTTAAGTCCACAACTTTGTGGCACCCTTT
* * *
2309336 TAAGTCCATAACCCTATGGCACCTTTTTAAGTCCACAACTCCGTGACACCTTTTTTCCATTTTAA
191 TAAGTCCACAACCCTATGGCACCCTTTTAACTCCACAACTCCGTGACACC----TT-C-TTTTAA
* * *
2309401 GTCCACAACTTCACGGCACCCTTTTAAGTCCACAACTCCATGGCACCATTTTTCTTTAAGTCCAT
250 GTCCAAAACTCCACGGCACCCTTTTAAGTCCAAAACTCCATGGCACCATTTTTCTTTAAGTCCAT
* * *** * *
2309466 AATTTTGTGGCATCATTTTAAGTCCACAATTTTGTAGCACCCTTCAAATTCCATGACTTAGTGGC
315 AATTTTGTGGCATCATTTTAAGCCCACAACTCCATAGCACCCTTCAAAGTCCACGACTTAGTGGC
* *
2309531 ATATCTTCTCCATGTCCACAACTTAGTGGCATCTTTTTTCT
380 ATATCTTCTCCAAGTCCACAACTTAGTGCCATCTTTTTTCT
*
2309572 TCCAAG-CACACGACTCAGTGTCATCT
1 TCCAAGTC-CACGACTCAGTGGCATCT
2309598 CTTATCTAAG
Statistics
Matches: 380, Mismatches: 57, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
417 80 0.21
418 122 0.32
423 1 0.00
426 22 0.06
427 150 0.39
428 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (420 bp):
TCCAAGTCCACGACTCAGTGGCATCTTTTTCTTCCAAAAGTCCACAACTGAGTGGCATCTTTTGT
CTCCTAAAGCCCACGACTCAATAGAATCTCTTATCTAAGTCCACAACTCCAGGGCACCTTTTCCT
TTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTAAGTCCACAACTTTGTGGCACCCTTTTAAGT
CCACAACCCTATGGCACCCTTTTAACTCCACAACTCCGTGACACCTTCTTTTAAGTCCAAAACTC
CACGGCACCCTTTTAAGTCCAAAACTCCATGGCACCATTTTTCTTTAAGTCCATAATTTTGTGGC
ATCATTTTAAGCCCACAACTCCATAGCACCCTTCAAAGTCCACGACTTAGTGGCATATCTTCTCC
AAGTCCACAACTTAGTGCCATCTTTTTTCT
Found at i:2309385 original size:27 final size:27
Alignment explanation
Indices: 2309274--2309390 Score: 103
Period size: 27 Copynumber: 4.1 Consensus size: 27
2309264 TGCCATTTTC
2309274 TTTTAAGTCCATAACTCCAG-GGCACCTTTT
1 TTTTAAGTCCATAACTCC-GTGGCACC---T
** *
2309304 CCTTTTAAGTCCATAACTTTGTGGCACCC
1 --TTTTAAGTCCATAACTCCGTGGCACCT
*
2309333 TTTTAAGTCCATAAC-CCTATGGCACCT
1 TTTTAAGTCCATAACTCC-GTGGCACCT
* *
2309360 TTTTAAGTCCACAACTCCGTGACACCT
1 TTTTAAGTCCATAACTCCGTGGCACCT
2309387 TTTT
1 TTTT
2309391 TCCATTTTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
27 47 0.65
28 2 0.03
31 1 0.01
32 22 0.31
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (27 bp):
TTTTAAGTCCATAACTCCGTGGCACCT
Found at i:2309423 original size:89 final size:87
Alignment explanation
Indices: 2309274--2309453 Score: 231
Period size: 89 Copynumber: 2.0 Consensus size: 87
2309264 TGCCATTTTC
* * * ***
2309274 TTTTAAGTCCATAACTCCAGGGCACCTTTTCCTTTTAAGTCCATAACTTTGTGGCACCCTTTTAA
1 TTTTAAGTCCACAACTCCAGGACACCTTTTCCTTTTAAGTCCACAACTTCACGGCACCCTTTTAA
*
2309339 GTCCATAAC-CCTATGGCACC-T
66 GTCCACAACTCC-ATGGCACCAT
2309360 TTTTAAGTCCACAACTCC-GTGACACCTTTTTTCCATTTTAAGTCCACAACTTCACGGCACCCTT
1 TTTTAAGTCCACAACTCCAG-GACACC--TTTTCC-TTTTAAGTCCACAACTTCACGGCACCCTT
2309424 TTAAGTCCACAACTCCATGGCACCAT
62 TTAAGTCCACAACTCCATGGCACCAT
2309450 TTTT
1 TTTT
2309454 CTTTAAGTCC
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
85 1 0.01
86 22 0.27
88 6 0.07
89 45 0.56
90 7 0.09
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.34
Consensus pattern (87 bp):
TTTTAAGTCCACAACTCCAGGACACCTTTTCCTTTTAAGTCCACAACTTCACGGCACCCTTTTAA
GTCCACAACTCCATGGCACCAT
Found at i:2309433 original size:27 final size:27
Alignment explanation
Indices: 2309392--2309452 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
2309382 CACCTTTTTT
*
2309392 CCATTTTAAGTCCACAACTTCACGGCA
1 CCATTTTAAGTCCACAACTCCACGGCA
* *
2309419 CCCTTTTAAGTCCACAACTCCATGGCA
1 CCATTTTAAGTCCACAACTCCACGGCA
2309446 CCATTTT
1 CCATTTT
2309453 TCTTTAAGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.34, G:0.10, T:0.30
Consensus pattern (27 bp):
CCATTTTAAGTCCACAACTCCACGGCA
Found at i:2309489 original size:59 final size:61
Alignment explanation
Indices: 2309353--2309494 Score: 162
Period size: 62 Copynumber: 2.3 Consensus size: 61
2309343 ATAACCCTAT
* * *
2309353 GGCACCTTTTTAAGTCCACAACTCCGTGACACCTTTTTTCCATTTTAAGTCCACAACTTCAC
1 GGCACCATTTTAAGTCCACAACTCCATGACACCATTTTTCCA-TTTAAGTCCACAACTTCAC
* * * * ***
2309415 GGCACCCTTTTAAGTCCACAACTCCATGGCACCATTTTT-C-TTTAAGTCCATAATTTTGT
1 GGCACCATTTTAAGTCCACAACTCCATGACACCATTTTTCCATTTAAGTCCACAACTTCAC
*
2309474 GGCATCATTTTAAGTCCACAA
1 GGCACCATTTTAAGTCCACAA
2309495 TTTTGTAGCA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
59 33 0.48
61 1 0.01
62 35 0.51
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (61 bp):
GGCACCATTTTAAGTCCACAACTCCATGACACCATTTTTCCATTTAAGTCCACAACTTCAC
Found at i:2309710 original size:27 final size:27
Alignment explanation
Indices: 2309604--2309777 Score: 125
Period size: 27 Copynumber: 6.0 Consensus size: 27
2309594 ATCTCTTATC
*
2309604 TAAGTCCACAACTCTGTGGCACTTTTTCCTT
1 TAAGTCCACAACTCTGTGGCAC--CTT--TT
* *
2309635 GTAAGTCCACAACTCTATGGCACCCTTT
1 -TAAGTCCACAACTCTGTGGCACCTTTT
* *
2309663 TAAGT-CAAAACTCCGTGGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
** *
2309689 TAAGTCCACAACTCTGCAGCACTTTTTTCCCTTT
1 TAAGTCCACAACTCTGTGGCA-------CCTTTT
*
2309723 TAAGTCCACAACTTTGTGGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
* * *
2309750 TAAGTCTACATCTCCGTGGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
2309777 T
1 T
2309778 CCTTTAAGTC
Statistics
Matches: 114, Mismatches: 20, Indels: 21
0.74 0.13 0.14
Matches are distributed among these distances:
26 22 0.19
27 45 0.39
28 2 0.02
30 1 0.01
32 21 0.18
34 23 0.20
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (27 bp):
TAAGTCCACAACTCTGTGGCACCTTTT
Found at i:2309750 original size:34 final size:34
Alignment explanation
Indices: 2309686--2309750 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
2309676 CGTGGCACCT
*
2309686 TTTTAAGTCCACAACTCTGCAGCACTTTTTTCCC
1 TTTTAAGTCCACAACTCTGCAGCACCTTTTTCCC
* **
2309720 TTTTAAGTCCACAACTTTGTGGCACCTTTTT
1 TTTTAAGTCCACAACTCTGCAGCACCTTTTT
2309751 AAGTCTACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.20, C:0.28, G:0.11, T:0.42
Consensus pattern (34 bp):
TTTTAAGTCCACAACTCTGCAGCACCTTTTTCCC
Found at i:2309751 original size:61 final size:61
Alignment explanation
Indices: 2309657--2309823 Score: 198
Period size: 61 Copynumber: 2.8 Consensus size: 61
2309647 CTCTATGGCA
* * * *
2309657 CCCTTTTAAGT-CAAAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGCAGCACTTTTTT
1 CCCTTTTAAGTCCACAACTTCGTGGCACCTTTTTAAGTCCACAACTCCGCAGCACCTTTTT
* * * **
2309717 CCCTTTTAAGTCCACAACTTTGTGGCACCTTTTTAAGTCTACATCTCCGTGGCACCTTTTT
1 CCCTTTTAAGTCCACAACTTCGTGGCACCTTTTTAAGTCCACAACTCCGCAGCACCTTTTT
* *
2309778 -CC-TTTAAGTCCACAACTTCGTGGCATCC-TTCTAAGTTCACAACTCC
1 CCCTTTTAAGTCCACAACTTCGTGGCA-CCTTTTTAAGTCCACAACTCC
2309824 AAGGCATACT
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
59 36 0.40
60 15 0.16
61 40 0.44
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (61 bp):
CCCTTTTAAGTCCACAACTTCGTGGCACCTTTTTAAGTCCACAACTCCGCAGCACCTTTTT
Found at i:2309751 original size:87 final size:86
Alignment explanation
Indices: 2309604--2309777 Score: 251
Period size: 87 Copynumber: 2.0 Consensus size: 86
2309594 ATCTCTTATC
**
2309604 TAAGTCCACAACTCTGTGGCACTTTTTCCTTGTAAGTCCACAACTCTATGGCACCCTTTTAAGTC
1 TAAGTCCACAACTCTGCAGCACTTTTTCCTTGTAAGTCCACAACTCTATGGCACCCTTTTAAGTC
2309669 -AAAACTCCGTGGCACCTTTT
66 TAAAACTCCGTGGCACCTTTT
* * * *
2309689 TAAGTCCACAACTCTGCAGCACTTTTTTCCCTTTTAAGTCCACAACTTTGTGGCACCTTTTTAAG
1 TAAGTCCACAACTCTGCAGCAC-TTTTT-CCTTGTAAGTCCACAACTCTATGGCACCCTTTTAAG
* *
2309754 TCTACATCTCCGTGGCACCTTTT
64 TCTAAAACTCCGTGGCACCTTTT
2309777 T
1 T
2309778 CCTTTAAGTC
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
85 20 0.26
86 5 0.06
87 34 0.44
88 19 0.24
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (86 bp):
TAAGTCCACAACTCTGCAGCACTTTTTCCTTGTAAGTCCACAACTCTATGGCACCCTTTTAAGTC
TAAAACTCCGTGGCACCTTTT
Found at i:2309829 original size:27 final size:26
Alignment explanation
Indices: 2309777--2309843 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
2309767 GGCACCTTTT
* **
2309777 TCCTTTAAGTCCACAACTTCGTGGCA
1 TCCTTTAAGTCCACAACTCCAAGGCA
*
2309803 TCCTTCTAAGTTCACAACTCCAAGGCA
1 TCCTT-TAAGTCCACAACTCCAAGGCA
*
2309830 TACTTTAAAGTCCA
1 TCCTTT-AAGTCCA
2309844 TGACACAGTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 6 0.18
27 27 0.82
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (26 bp):
TCCTTTAAGTCCACAACTCCAAGGCA
Found at i:2309846 original size:325 final size:324
Alignment explanation
Indices: 2309277--2310446 Score: 1015
Period size: 325 Copynumber: 3.5 Consensus size: 324
2309267 CATTTTCTTT
* * *
2309277 TAAGTCCATAACTCCAG-GGCACCTTTTCCTTTTAAGTCCATAACTTTGTGGCACCCTTTTAAGT
1 TAAGTCCACAACT-CAGTGGCACATTTTCCTTTTAAGTCCACAAC-TTGTGGCACCCTTTTAAGT
* *
2309341 CCATAAC-CCTATGGCACCTTTTTAAGTCCACAACTCCGTGA-CACCTTTTTTCCATTTTAAGTC
64 CCATAACTCC-GTGGCACCTTTTTAAGTCCACAACT-C-TGAGCA-CTTTTTTCCCTTTTAAGTC
*** * *
2309404 CACAACTTCACGGCACCCTTTTAAGTCCACAACTCCATGGCACCATTTTT-CTTTAAGTCCATAA
125 CACAACTTTGTGGCACCTTTTTAAGTCCACAACTCCATGGCACC-TTTTTCCTTTAAGTCCAAAA
* * * * * *** * * **
2309468 TTTTGTGGCATCATTTTAAGTCCACAATTTTGTAGCACCCTTCAAATTCCATGACTTAGTGGCAT
189 CTTCGTGGCATCCTTCTAAGTCCACAATCTCCAAGCACACTTCAAAGTCCATGACACAGTGGCAT
* * * *
2309533 ATCTTCTCC-ATGTCCACAACTTAG-TGGCATCTTTTTTCTTCCAAG-CACACGACTCAGTGTCA
254 ATCTTC-CCTAAGTCCACAAC-TAGATGGCATCCTTTTTCTTCCAAGTC-CACGACTCAATGGCA
*
2309595 TCTCTTATC
316 TCTCGTATC
* * * *
2309604 TAAGTCCACAACTCTGTGGCACTTTTTCCTTGTAAGTCCACAACTCTATGGCACCCTTTTAAGT-
1 TAAGTCCACAACTCAGTGGCACATTTTCCTTTTAAGTCCACAACT-TGTGGCACCCTTTTAAGTC
*
2309668 CAAAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGCAGCACTTTTTTCCCTTTTAAGTCCACA
65 CATAACTCCGTGGCACCTTTTTAAGTCCACAACTCTG-AGCACTTTTTTCCCTTTTAAGTCCACA
* * * *
2309733 ACTTTGTGGCACCTTTTTAAGTCTACATCTCCGTGGCACCTTTTTCCTTTAAGTCCACAACTTCG
129 ACTTTGTGGCACCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCCTTTAAGTCCAAAACTTCG
* * * * *
2309798 TGGCATCCTTCTAAGTTCACAA-CTCCAAGGCATACTTTAAAGTCCATGACACAGTGGCATCTTT
194 TGGCATCCTTCTAAGTCCACAATCTCCAA-GCACACTTCAAAGTCCATGACACAGTGGCATATCT
*** *
2309862 TCCCTAAGTCCATGGCTCGATGGCATCCTTTTTCTTCCAAGTCCACGACTCAATGGCATCTCGTA
258 TCCCTAAGTCCACAACTAGATGGCATCCTTTTTCTTCCAAGTCCACGACTCAATGGCATCTCGTA
2309927 TC
323 TC
* * *
2309929 TATGTCCACAACTCCGTGGCACATTTTCCTTTTAAGTCCACAACTTCGTGGCACCATTTTTCCCT
1 TAAGTCCACAACTCAGTGGCACATTTTCCTTTTAAGTCCACAACTT-GTGGCA-C------CCTT
* * *
2309994 TTAAGTCCATAACTCTGTGGCA-CTTTTTGAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTA
58 TTAAGTCCATAACTCCGTGGCACCTTTTT-AAGTCCACAACTCTG-AGCACTTTTTTCCCTTTTA
* *
2310058 AGTCCACACCTTTGTGACACCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCCTTTAAGTCCA
121 AGTCCACAACTTTGTGGCACCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCCTTTAAGTCCA
* * * * *** * * * ** *
2310123 AAACTCCGTGGCATCCTTTTATGTCCACAAACTTCGTGGCACCCTTCAAAGTCCACGGCTTAGTT
186 AAACTTCGTGGCATCCTTCTAAGTCCACAATC-TCCAAGCACACTTCAAAGTCCATGACACAGTG
* ** * ** * *
2310188 ACATCCCTTCTCTAAGTCCATGACGTACG--GGCATCCTTTTTCTTCCAAAAGTCCACAACTTAA
250 GCATATCTTCCCTAAGTCCACAAC-TA-GATGGCATCCTTTTTCTTCC--AAGTCCACGACTCAA
* *
2310251 TGGCATC-CTTTTTC
311 TGGCATCTC-GTATC
* * * *
2310265 TCCCAAAGTCCACGACTCAGTGG--CATCTCTCC-TCTAAGTCCACAACTCCGTGGCACCTTTTC
1 T----AAGTCCACAACTCAGTGGCACAT-TTTCCTTTTAAGTCCACAACT-TGTGGCA-C----C
* * ** *
2310327 CTTTTAAGTCCATAACTCCATAGCA-CTGTTTTAAGTCCACAACTCCAAGACACCTTTTTCCCTT
55 CTTTTAAGTCCATAACTCCGTGGCACCT-TTTTAAGTCCACAACTCTGAG-CACTTTTTTCCCTT
**** * **
2310391 TTAAGTCCACAAAACCGTGGCACCATTTTAAGTCCACAACTCTGTGGCACCTTTTT
118 TTAAGTCCACAACTTTGTGGCACCTTTTTAAGTCCACAACTCCATGGCACCTTTTT
2310447 AAGTACACAA
Statistics
Matches: 701, Mismatches: 107, Indels: 61
0.81 0.12 0.07
Matches are distributed among these distances:
324 14 0.02
325 215 0.31
326 36 0.05
327 55 0.08
332 15 0.02
333 130 0.19
334 56 0.08
335 5 0.01
336 127 0.18
337 4 0.01
338 25 0.04
339 4 0.01
340 15 0.02
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (324 bp):
TAAGTCCACAACTCAGTGGCACATTTTCCTTTTAAGTCCACAACTTGTGGCACCCTTTTAAGTCC
ATAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGAGCACTTTTTTCCCTTTTAAGTCCACAAC
TTTGTGGCACCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCCTTTAAGTCCAAAACTTCGTG
GCATCCTTCTAAGTCCACAATCTCCAAGCACACTTCAAAGTCCATGACACAGTGGCATATCTTCC
CTAAGTCCACAACTAGATGGCATCCTTTTTCTTCCAAGTCCACGACTCAATGGCATCTCGTATC
Found at i:2309968 original size:32 final size:33
Alignment explanation
Indices: 2309932--2310135 Score: 166
Period size: 34 Copynumber: 6.5 Consensus size: 33
2309922 TCGTATCTAT
2309932 GTCCACAACTCCGTGGCA-CATTTTCCTTTTAA
1 GTCCACAACTCCGTGGCACCATTTTCCTTTTAA
* *
2309964 GTCCACAACTTCGTGGCACCATTTTTCCCTTTAA
1 GTCCACAACTCCGTGGCACCA-TTTTCCTTTTAA
* * *
2309998 GTCCATAACTCTGTGGCA-C---TT--TTTGAA
1 GTCCACAACTCCGTGGCACCATTTTCCTTTTAA
* *
2310025 GTCCACAACTCTGTGGCACCTTTTTCCCTTTTAA
1 GTCCACAACTCCGTGGCACCATTTT-CCTTTTAA
* ** *
2310059 GTCCACACCTTTGTGACACC----T--TTTTAA
1 GTCCACAACTCCGTGGCACCATTTTCCTTTTAA
* *
2310086 GTCCACAACTCCATGGCACCTTTTTCC-TTTAA
1 GTCCACAACTCCGTGGCACCATTTTCCTTTTAA
*
2310118 GTCCAAAACTCCGTGGCA
1 GTCCACAACTCCGTGGCA
2310136 TCCTTTTATG
Statistics
Matches: 138, Mismatches: 19, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
27 42 0.30
28 1 0.01
29 2 0.01
30 1 0.01
31 3 0.02
32 38 0.28
33 3 0.02
34 48 0.35
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (33 bp):
GTCCACAACTCCGTGGCACCATTTTCCTTTTAA
Found at i:2309997 original size:34 final size:31
Alignment explanation
Indices: 2309932--2310142 Score: 154
Period size: 32 Copynumber: 6.8 Consensus size: 31
2309922 TCGTATCTAT
* *
2309932 GTCCACAACTCCGTGGCACATTTTCCTTTTAA
1 GTCCACAACTTCGTGGCACCTTTTCC-TTTAA
2309964 GTCCACAACTTCGTGGCACCATTTTTCCCTTTAA
1 GTCCACAACTTCGTGGCACC--TTTT-CCTTTAA
* *
2309998 GTCCATAAC-TCTGTGGCA-C-TTT--TTGAA
1 GTCCACAACTTC-GTGGCACCTTTTCCTTTAA
2310025 GTCCACAAC-TCTGTGGCACCTTTTTCCCTTTTAA
1 GTCCACAACTTC-GTGGCACC-TTTT-CC-TTTAA
* * *
2310059 GTCCACACCTTTGTGACACC--TT--TTTAA
1 GTCCACAACTTCGTGGCACCTTTTCCTTTAA
* *
2310086 GTCCACAACTCCATGGCACCTTTTTCCTTTAA
1 GTCCACAACTTCGTGGCACC-TTTTCCTTTAA
* *
2310118 GTCCAAAACTCCGTGGCATCCTTTT
1 GTCCACAACTTCGTGGCA-CCTTTT
2310143 ATGTCCACAA
Statistics
Matches: 145, Mismatches: 16, Indels: 36
0.74 0.08 0.18
Matches are distributed among these distances:
27 41 0.28
28 1 0.01
30 8 0.06
31 2 0.01
32 43 0.30
33 5 0.03
34 42 0.29
35 3 0.02
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.36
Consensus pattern (31 bp):
GTCCACAACTTCGTGGCACCTTTTCCTTTAA
Found at i:2310027 original size:27 final size:28
Alignment explanation
Indices: 2309996--2310110 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 28
2309986 TTTTCCCTTT
*
2309996 AAGTCCATAACTCTGTGGCA-CTTTTTG
1 AAGTCCACAACTCTGTGGCACCTTTTTG
*
2310023 AAGTCCACAACTCTGTGGCACCTTTTTCCCTTTT
1 AAGTCCACAACTCTGTGGCACC---TT---TTTG
* * *
2310057 AAGTCCACACCTTTGTGACACCTTTTT-
1 AAGTCCACAACTCTGTGGCACCTTTTTG
**
2310084 AAGTCCACAACTCCATGGCACCTTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTT
2310111 CCTTTAAGTC
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
27 41 0.58
28 4 0.06
31 4 0.06
34 22 0.31
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.36
Consensus pattern (28 bp):
AAGTCCACAACTCTGTGGCACCTTTTTG
Found at i:2310041 original size:61 final size:60
Alignment explanation
Indices: 2309958--2310165 Score: 253
Period size: 61 Copynumber: 3.4 Consensus size: 60
2309948 CACATTTTCC
*
2309958 TTTTAAGTCCACAACTTCGTGGCACCATTTTTCCCTTTAAGTCCATAACTCTGTGGCA-CT
1 TTTTAAGTCCACAACTTCGTGGCACC-TTTTTCCCTTTAAGTCCAAAACTCTGTGGCACCT
* * * *
2310018 TTTTGAAGTCCACAAC-TCTGTGGCACCTTTTTCCCTTTTAAGTCCACACCTTTGTGACACCT
1 TTTT-AAGTCCACAACTTC-GTGGCACCTTTTTCCC-TTTAAGTCCAAAACTCTGTGGCACCT
* * *
2310080 TTTTAAGTCCACAACTCCATGGCACCTTTTT-CCTTTAAGTCCAAAACTCCGTGGCATCC-
1 TTTTAAGTCCACAACTTCGTGGCACCTTTTTCCCTTTAAGTCCAAAACTCTGTGGCA-CCT
*
2310139 TTTTATGTCCACAAACTTCGTGGCACC
1 TTTTAAGTCCAC-AACTTCGTGGCACC
2310166 CTTCAAAGTC
Statistics
Matches: 127, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
59 29 0.23
60 30 0.24
61 61 0.48
62 7 0.06
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (60 bp):
TTTTAAGTCCACAACTTCGTGGCACCTTTTTCCCTTTAAGTCCAAAACTCTGTGGCACCT
Found at i:2310148 original size:27 final size:28
Alignment explanation
Indices: 2310050--2310178 Score: 84
Period size: 27 Copynumber: 4.5 Consensus size: 28
2310040 GCACCTTTTT
* ** *
2310050 CCCTTTTAAGTCCAC-ACCTTTGTGACA
1 CCCTTTTAAGTCCACAAACTCCGTGGCA
* *
2310077 CCTTTTTAAGTCCAC-AACTCCATGGCA
1 CCCTTTTAAGTCCACAAACTCCGTGGCA
*
2310104 CCTTTTTCCTTTAAGTCCA-AAACTCCGTGGCA
1 CC-----CTTTTAAGTCCACAAACTCCGTGGCA
* * *
2310136 TCCTTTTATGTCCACAAACTTCGTGGCA
1 CCCTTTTAAGTCCACAAACTCCGTGGCA
**
2310164 CCCTTCAAAGTCCAC
1 CCCTTTTAAGTCCAC
2310179 GGCTTAGTTA
Statistics
Matches: 78, Mismatches: 17, Indels: 13
0.72 0.16 0.12
Matches are distributed among these distances:
27 33 0.42
28 23 0.29
32 22 0.28
ACGTcount: A:0.23, C:0.33, G:0.12, T:0.32
Consensus pattern (28 bp):
CCCTTTTAAGTCCACAAACTCCGTGGCA
Found at i:2310178 original size:28 final size:28
Alignment explanation
Indices: 2310116--2310178 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
2310106 TTTTTCCTTT
* **
2310116 AAGTCCA-AAACTCCGTGGCATCCTTTT
1 AAGTCCACAAACTCCGTGGCACCCTTCA
* *
2310143 ATGTCCACAAACTTCGTGGCACCCTTCA
1 AAGTCCACAAACTCCGTGGCACCCTTCA
2310171 AAGTCCAC
1 AAGTCCAC
2310179 GGCTTAGTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.25
Consensus pattern (28 bp):
AAGTCCACAAACTCCGTGGCACCCTTCA
Found at i:2310289 original size:34 final size:35
Alignment explanation
Indices: 2310217--2310291 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 35
2310207 ATGACGTACG
*
2310217 GGCATCCTTTTTCTTCCAAAAGTCCACAACTTAAT
1 GGCATCCTTTTTCTTCCAAAAGTCCACAACTCAAT
* * *
2310252 GGCATCCTTTTTC-TCCCAAAGTCCACGACTCAGT
1 GGCATCCTTTTTCTTCCAAAAGTCCACAACTCAAT
2310286 GGCATC
1 GGCATC
2310292 TCTCCTCTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 23 0.64
35 13 0.36
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.31
Consensus pattern (35 bp):
GGCATCCTTTTTCTTCCAAAAGTCCACAACTCAAT
Found at i:2310442 original size:61 final size:60
Alignment explanation
Indices: 2310299--2310446 Score: 181
Period size: 61 Copynumber: 2.5 Consensus size: 60
2310289 ATCTCTCCTC
* ** **
2310299 TAAGTCCACAACTCCGTGGCACC-TTTTCCTTTTAAGTCCATAACTCCATAGCACTGTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAAAACCATAGCACCATTT
** * * *
2310358 TAAGTCCACAACTCCAAGACACCTTTTTCCCTTTTAAGTCCACAAAACCGTGGCACCATTT
1 TAAGTCCACAACTCCGTGGCACCTTTTT-CCTTTTAAGTCCACAAAACCATAGCACCATTT
*
2310419 TAAGTCCACAACTCTGTGGCACCTTTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTT
2310447 AAGTACACAA
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
59 20 0.27
60 4 0.05
61 49 0.67
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (60 bp):
TAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAAAACCATAGCACCATTT
Found at i:2310447 original size:88 final size:88
Alignment explanation
Indices: 2310328--2310534 Score: 245
Period size: 88 Copynumber: 2.4 Consensus size: 88
2310318 CACCTTTTCC
* ** * *
2310328 TTTTAAGTCCATAACTCCATAGCA-CTGTTTTAAGTCCACAACTCCAAGACACCTTTTTCCCTTT
1 TTTTAAGTCCACAACTCTGTGGCACCT-TTTTAAGTACACAACTCCAAGACACCTTTTTCCCTTT
2310392 TAAGTCCACAAAACCGTGGCACCA
65 TAAGTCCACAAAACCGTGGCACCA
** * *
2310416 TTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTACACAACTCCGTGGCACTTTTTTCCCTTTT
1 TTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTACACAACTCCAAGACACCTTTTTCCCTTTT
* ** * **
2310481 AAGTCCATAACTCCGTGTCACTT
66 AAGTCCACAAAACCGTGGCACCA
* *
2310504 TTTTAAGTCAACAACTCTGCGGCACCTTTTT
1 TTTTAAGTCCACAACTCTGTGGCACCTTTTT
2310535 CCTTTAAGTC
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 99 0.98
89 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (88 bp):
TTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTACACAACTCCAAGACACCTTTTTCCCTTTT
AAGTCCACAAAACCGTGGCACCA
Found at i:2310467 original size:424 final size:419
Alignment explanation
Indices: 2309993--2310758 Score: 1011
Period size: 424 Copynumber: 1.8 Consensus size: 419
2309983 CATTTTTCCC
* * *
2309993 TTTAAGTCCATAACTCTGTGGCACTTTTTGAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTA
1 TTTAAGTCCACAACTCTGTGGCACTTTTTGAAGTACACAACTCCGTGGCACCTTTTTCCCTTTTA
* ** * *
2310058 AGTCCACACCTTTGTGACACCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCCTTTAAGTCCA
66 AGTCCACAACTCCGTGACACCTTTTTAAGTCAACAACTCCACGGCACCTTTTTCCTTTAAGTCCA
* * * * * *
2310123 AAACTCCGTGGCATCCTTTTATGTCCACAAACTTCGTGGCACCCTTCAAAGTCCACGGCTTAGT-
131 AAACTCCATGGCATCCTTTTAAGTCC-CAAACTCCATGGCACCCTTCAAAGACCACGACTTAGTG
* * * *
2310187 TACATCC-CTTCT-CTAAGTCCATGACGTACG-GGCATCCTTTTTCTTCCAAAAGTCCACAACTT
195 TAC--CCTCTTCTCCCAAGTCCACGACGTA-GTGGAATCCTTTTTCTTCAAAAAGTCCACAAC--
* *
2310249 AATGGCATCCTTTTTCTCCCAAAGTCCACGACTCAGTGGCATCTCTCCTCTAAGTCCACAACTCC
255 -ATAG--TCCTTTTTCTCCCAAAATCCACGACTCAGTGGCATCTCTCCTCTAAGTCCACAACTCC
*
2310314 GTGGCACCTTTTCCTTTTAAGTCCATAACTCCATAGCACTGTTTTAAGTCCACAACTCCAAGACA
317 GTGGCACATTTTCCTTTTAAGTCCATAACTCCATAGCACTGTTTTAAGTCCACAACTCCAAGACA
2310379 CCTTTTTCCCTTTTAAGTCCACAAAACCGTGGCACCAT
382 CCTTTTTCCCTTTTAAGTCCACAAAACCGTGGCACCAT
*
2310417 TTTAAGTCCACAACTCTGTGGCACCTTTTT-AAGTACACAACTCCGTGGCACTTTTTTCCCTTTT
1 TTTAAGTCCACAACTCTGTGGCA-CTTTTTGAAGTACACAACTCCGTGGCACCTTTTTCCCTTTT
* * * **
2310481 AAGTCCATAACTCCGTGTCACTTTTTTAAGTCAACAACTCTGCGGCACCTTTTTCCTTTAAGTCC
65 AAGTCCACAACTCCGTGACACCTTTTTAAGTCAACAACTCCACGGCACCTTTTTCCTTTAAGTCC
* * * *
2310546 ATAACTCTATGGCATTCTTTTAAGTCCCCAACTCCATGGCACCCTTCAAAGACCACGACTTAGTG
130 AAAACTCCATGGCATCCTTTTAAGTCCCAAACTCCATGGCACCCTTCAAAGACCACGACTTAGT-
* * * * *
2310611 GTGCCCTTTTTCTCCCAAGTCCACGACTTAGTGGAATCCTTTTTCTTCAAAAAGTCTACGACATA
194 GTACCC-TCTTCTCCCAAGTCCACGACGTAGTGGAATCCTTTTTCTTCAAAAAGTCCACAACATA
* * * * *
2310676 GTCCTTTTTCTCTCAAAATCCATGACTCAGTGGCATCTCTTCTCTAAGTCTATAACTCCGTGGCA
258 GTCCTTTTTCTCCCAAAATCCACGACTCAGTGGCATCTCTCCTCTAAGTCCACAACTCCGTGGCA
*
2310741 CATTTTTCTTTTAAGTCC
323 CATTTTCCTTTTAAGTCC
2310759 CCAACTCTGG
Statistics
Matches: 293, Mismatches: 42, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
421 74 0.25
423 37 0.13
424 130 0.44
425 13 0.04
426 39 0.13
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (419 bp):
TTTAAGTCCACAACTCTGTGGCACTTTTTGAAGTACACAACTCCGTGGCACCTTTTTCCCTTTTA
AGTCCACAACTCCGTGACACCTTTTTAAGTCAACAACTCCACGGCACCTTTTTCCTTTAAGTCCA
AAACTCCATGGCATCCTTTTAAGTCCCAAACTCCATGGCACCCTTCAAAGACCACGACTTAGTGT
ACCCTCTTCTCCCAAGTCCACGACGTAGTGGAATCCTTTTTCTTCAAAAAGTCCACAACATAGTC
CTTTTTCTCCCAAAATCCACGACTCAGTGGCATCTCTCCTCTAAGTCCACAACTCCGTGGCACAT
TTTCCTTTTAAGTCCATAACTCCATAGCACTGTTTTAAGTCCACAACTCCAAGACACCTTTTTCC
CTTTTAAGTCCACAAAACCGTGGCACCAT
Found at i:2310472 original size:27 final size:27
Alignment explanation
Indices: 2310389--2310534 Score: 121
Period size: 27 Copynumber: 5.1 Consensus size: 27
2310379 CCTTTTTCCC
** *
2310389 TTTTAAGTCCACAAAACCGTGGCACCA
1 TTTTAAGTCCACAACTCCGTGGCACCT
*
2310416 TTTTAAGTCCACAACTCTGTGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
* *
2310443 TTTTAAGTACACAACTCCGTGGCACTTTTTTCCC
1 TTTTAAGTCCACAACTCCGTGGCA-------CCT
* * *
2310477 TTTTAAGTCCATAACTCCGTGTCACTT
1 TTTTAAGTCCACAACTCCGTGGCACCT
* * *
2310504 TTTTAAGTCAACAACTCTGCGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
2310531 TTTT
1 TTTT
2310535 CCTTTAAGTC
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
27 71 0.76
34 23 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCT
Found at i:2310481 original size:61 final size:59
Alignment explanation
Indices: 2310416--2310588 Score: 197
Period size: 61 Copynumber: 2.9 Consensus size: 59
2310406 CGTGGCACCA
* * *
2310416 TTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTACACAACTCCGTGGCACTTTTTTCCC
1 TTTTAAGTCCATAACTCTGTGGCACTTTTTTAAGT-CACAACTCCGTGGCACCTTTTT-CC
* * * *
2310477 TTTTAAGTCCATAACTCCGTGTCACTTTTTTAAGTCAACAACTCTGCGGCACCTTTTTCC
1 TTTTAAGTCCATAACTCTGTGGCACTTTTTTAAGTC-ACAACTCCGTGGCACCTTTTTCC
* * *
2310537 -TTTAAGTCCATAACTCTATGGCA-TTCTTTTAAGTCCCCAACTCCATGGCACC
1 TTTTAAGTCCATAACTCTGTGGCACTT-TTTTAAGT-CACAACTCCGTGGCACC
2310589 CTTCAAAGAC
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
58 2 0.02
59 40 0.42
60 4 0.04
61 49 0.52
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (59 bp):
TTTTAAGTCCATAACTCTGTGGCACTTTTTTAAGTCACAACTCCGTGGCACCTTTTTCC
Found at i:2310484 original size:34 final size:34
Alignment explanation
Indices: 2310443--2310507 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
2310433 TGTGGCACCT
2310443 TTTTAAGTACACAACTCCGTGGCACTTTTTTCCC
1 TTTTAAGTACACAACTCCGTGGCACTTTTTTCCC
* * *
2310477 TTTTAAGTCCATAACTCCGTGTCACTTTTTT
1 TTTTAAGTACACAACTCCGTGGCACTTTTTT
2310508 AAGTCAACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (34 bp):
TTTTAAGTACACAACTCCGTGGCACTTTTTTCCC
Found at i:2310806 original size:32 final size:32
Alignment explanation
Indices: 2310720--2310811 Score: 112
Period size: 32 Copynumber: 2.8 Consensus size: 32
2310710 ATCTCTTCTC
* * * * *
2310720 TAAGTCTATAACTCCGTGGCACATTTTTCTTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
* *
2310752 TAAGTCCCCAACTCTGGGGCACCTTTTCCTTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
2310784 TAAGTCCACAACTCTGTGGCACCCTTTT
1 TAAGTCCACAACTCTGTGGCA-CCTTTT
2310812 AAGTTTACAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
32 44 0.88
33 6 0.12
ACGTcount: A:0.20, C:0.29, G:0.14, T:0.37
Consensus pattern (32 bp):
TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
Found at i:2310821 original size:27 final size:27
Alignment explanation
Indices: 2310779--2310886 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 27
2310769 GGCACCTTTT
*
2310779 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
** *
2310806 CCTTTTAAGTTTACAACTCCATGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
2310833 CTTTTTAAGTCCACAACTCCGTAGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
2310860 CATTTTAAATCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
2310887 ATTTTTCGTT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:2311178 original size:383 final size:376
Alignment explanation
Indices: 2310519--2311219 Score: 879
Period size: 383 Copynumber: 1.8 Consensus size: 376
2310509 AGTCAACAAC
* * * * ** *
2310519 TCTGCGGCACCTTTTTCCTTTAAGTCCATAACTCTATGGCATTCTTTTAAGTCCCCAACTCCATG
1 TCTGCGGCACCTTTTTCCTTTAAGTCAATAACTCCATGGCATCCTTTTAAATCCAAAACTCCATA
* *
2310584 GCACCCTTCAAAGACCACGACTTAGTGGTGCCCTTTTTCTCCCAAGTCCACGACTTAGTGGAATC
66 GCACCCTTCAAAGACCACGACTCA--GATGCCCTTTTTCTCCCAAGTCCACGACTTAGTGGAATC
* * * * *
2310649 CTTTTTCTTCAAAAAGTCTACGACATAGTCCTTTTTCTCTCAAAATCCATGACTCAGTGGCATCT
129 CTTTTTCTTCAAAAACTCTACAACATAGTCCATTTTCCCCCAAAATCCATGACTCAGTGGCATCT
* * * * *
2310714 CTTCTCTAAGTCTATAACTCCGTGGCACATTTTTCTTTTAAGTCCCCAACTCTGGGGCACCTTTT
194 CTTCTCTAAGTCCACAACACCGCGGCACATTTTTCTTTTAAGTCCACAACTCTGGGGCACCTTTT
* * * *
2310779 CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTTTACAACTCCATGGCACCTTTTTAAGTC
259 CCTTTTAAGCCCACAACTCTGTGG-AACATTTTAAGTTCAC-ACTCCATGGCACCTTTTTAAGTC
2310844 CACAACTCCGTAGCACCATTTTAAATCCACAACTCCGTGGCACATTTTTCGTTTT
322 CACAACTCCGTAGCACCATTTTAAATCCACAACTCCGTGGCACATTTTTCGTTTT
* * *
2310899 TCTGTGGCACCTTTTTCCTTTAAGTCAATAACTCCGTGGCATCCTTTTAAATCCAAAACTCTATA
1 TCTGCGGCACCTTTTTCCTTTAAGTCAATAACTCCATGGCATCCTTTTAAATCCAAAACTCCATA
** * * * *
2310964 GCACCCTTCAAATTCCACGACTCA-AT-CAC-TTTTCTTCTCCATGTCCATGACTTAGTGGCATT
66 GCACCCTTCAAAGACCACGACTCAGATGCCCTTTTTC-TC-CCAAGTCCACGACTTAGTGG-AAT
** * *
2311026 TTTTTTTCTTCCAAAACTCTACAACTTAGTAGCATCCATTTTCCCCCAAAGTCCATGACTCAGTG
128 CCTTTTTCTTCAAAAACTCTACAAC--A-TAG--TCCATTTTCCCCCAAAATCCATGACTCAGTG
* * *
2311091 GCATCTTTTCTCTAAGTCCACAACACCGCGGCACCTTTTTCTTTTAAGTCCACAACTCTGTGGCA
188 GCATCTCTTCTCTAAGTCCACAACACCGCGGCACATTTTTCTTTTAAGTCCACAACTCTGGGGCA
* **
2311156 -CTTTCTCCTTTTAAGCCCACAACTCTGTTGAACATTTTAAGTTCACACTCTGTGGCACCTTTTT
253 CCTTT-TCCTTTTAAGCCCACAACTCTGTGGAACATTTTAAGTTCACACTCCATGGCACCTTTTT
2311220 TCCCTTTTAT
Statistics
Matches: 270, Mismatches: 42, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
375 5 0.02
376 4 0.01
377 19 0.07
378 22 0.08
380 77 0.29
381 19 0.07
382 17 0.06
383 107 0.40
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (376 bp):
TCTGCGGCACCTTTTTCCTTTAAGTCAATAACTCCATGGCATCCTTTTAAATCCAAAACTCCATA
GCACCCTTCAAAGACCACGACTCAGATGCCCTTTTTCTCCCAAGTCCACGACTTAGTGGAATCCT
TTTTCTTCAAAAACTCTACAACATAGTCCATTTTCCCCCAAAATCCATGACTCAGTGGCATCTCT
TCTCTAAGTCCACAACACCGCGGCACATTTTTCTTTTAAGTCCACAACTCTGGGGCACCTTTTCC
TTTTAAGCCCACAACTCTGTGGAACATTTTAAGTTCACACTCCATGGCACCTTTTTAAGTCCACA
ACTCCGTAGCACCATTTTAAATCCACAACTCCGTGGCACATTTTTCGTTTT
Found at i:2311218 original size:25 final size:26
Alignment explanation
Indices: 2311162--2311218 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
2311152 GGCACTTTCT
*
2311162 CCTTTTAAGCCCACAACTCTGTTGAA
1 CCTTTTAAGCCCACAACTCTGTGGAA
* ** *
2311188 CATTTTAAGTTCAC-ACTCTGTGGCA
1 CCTTTTAAGCCCACAACTCTGTGGAA
2311213 CCTTTT
1 CCTTTT
2311219 TTCCCTTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (26 bp):
CCTTTTAAGCCCACAACTCTGTGGAA
Found at i:2311266 original size:27 final size:26
Alignment explanation
Indices: 2311223--2311347 Score: 90
Period size: 27 Copynumber: 4.5 Consensus size: 26
2311213 CCTTTTTTCC
* *
2311223 CTTTTATGTCCATAACTCTGTGGCAT
1 CTTTTAAGTCCACAACTCTGTGGCAT
*
2311249 CTATTTAAGTCCACAACTCCGTGGCACTTTTTT
1 CT-TTTAAGTCCACAACTCTGTGGCA------T
*
2311282 CTTTTAAGTCCACAACTCTAT-GCAAT
1 CTTTTAAGTCCACAACTCTGTGGC-AT
* *
2311308 CCTTTTAAGTCCACAACTCGGTGGCACC
1 -CTTTTAAGTCCACAACTCTGTGGCA-T
*
2311336 CTTTAAAGTCCA
1 CTTTTAAGTCCA
2311348 TGACTTAGTT
Statistics
Matches: 79, Mismatches: 9, Indels: 21
0.72 0.08 0.19
Matches are distributed among these distances:
26 3 0.04
27 51 0.65
28 2 0.03
31 2 0.03
32 18 0.23
33 3 0.04
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (26 bp):
CTTTTAAGTCCACAACTCTGTGGCAT
Found at i:2311293 original size:32 final size:32
Alignment explanation
Indices: 2311103--2311534 Score: 149
Period size: 32 Copynumber: 14.2 Consensus size: 32
2311093 ATCTTTTCTC
* * * *
2311103 TAAGTCCACAACACCGCGGCACCTTTTTCTTT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
* *
2311135 TAAGTCCACAACTCTGTGGCACTTTCTCCTTT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
* * * *
2311167 TAAGCCCACAACTCTGTTGAAC------ATTT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
*
2311193 TAAGTTCAC-ACTCTGTGGCACCTTTTTTCCCTTT
1 TAAGTCCACAACTCTGTGGCA-CTTTTTT--CTTT
* *
2311227 TATGTCCATAACTCTGTGGCA------TCTATT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCT-TT
*
2311254 TAAGTCCACAACTCCGTGGCACTTTTTTCTTT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
* * *
2311286 TAAGTCCACAACTCTAT-GCA----ATCCTTT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
* *
2311313 TAAGTCCACAACTCGGTGGCAC-----CCTTT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
* ** * * * *
2311340 AAAGTCCATGACT-TAGTTGCA-TCTCTTC-TC
1 TAAGTCCACAACTCT-GTGGCACTTTTTTCTTT
* *
2311370 TAAGTCCACGACT-TAGTGGCAAACTTTTTCCCTTT
1 TAAGTCCACAACTCT-GTGGC--ACTTTTT-TCTTT
**
2311405 TAAGTCCACAACTCCCTGGCAAC----TTC-TT
1 TAAGTCCACAACTCTGTGGC-ACTTTTTTCTTT
* * *
2311433 T-AGTCCACAACTCTATAGCACATTTTTCCCTTT
1 TAAGTCCACAACTCTGTGGCAC-TTTTT-TCTTT
* * *
2311466 TAAGTCCACAACTTTGTGGCACCTTTTTCATT
1 TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
** * *
2311498 TAAGTTTACAACT-TCGTGGCACCTTTTTCATT
1 TAAGTCCACAACTCT-GTGGCACTTTTTTCTTT
2311530 TAAGT
1 TAAGT
2311535 TTACAACACC
Statistics
Matches: 303, Mismatches: 57, Indels: 80
0.69 0.13 0.18
Matches are distributed among these distances:
25 9 0.03
26 15 0.05
27 75 0.25
28 7 0.02
29 1 0.00
30 19 0.06
31 6 0.02
32 100 0.33
33 13 0.04
34 30 0.10
35 28 0.09
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (32 bp):
TAAGTCCACAACTCTGTGGCACTTTTTTCTTT
Found at i:2311548 original size:32 final size:32
Alignment explanation
Indices: 2311481--2311557 Score: 118
Period size: 32 Copynumber: 2.4 Consensus size: 32
2311471 CCACAACTTT
**
2311481 GTGGCACCTTTTTCATTTAAGTTTACAACTTC
1 GTGGCACCTTTTTCATTTAAGTTTACAACACC
2311513 GTGGCACCTTTTTCATTTAAGTTTACAACACC
1 GTGGCACCTTTTTCATTTAAGTTTACAACACC
*
2311545 GTGGGATCCTTTT
1 GTGGCA-CCTTTT
2311558 AAGTCCACAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 35 0.85
33 6 0.15
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.42
Consensus pattern (32 bp):
GTGGCACCTTTTTCATTTAAGTTTACAACACC
Found at i:2311590 original size:244 final size:243
Alignment explanation
Indices: 2311251--2311768 Score: 612
Period size: 244 Copynumber: 2.1 Consensus size: 243
2311241 TGTGGCATCT
* * * *
2311251 ATTTAAGTCCACAACTCCGTGGCACTTTTTTCTTTTAAGTCCACAACTCTATGCAATCCTTTTAA
1 ATTTAAGTCCACAACTCCGTGGCACCTTTTTCATTTAAGTCCACAACACCATGCAATCCTTTTAA
* * *
2311316 GTCCACAACTCGGTGGCACCCTTTAAAGTCCATGACTTAGTTGCATCTCTTCTCTAAGTCCACGA
66 GTCCACAACTCGGTGGCACCCTTCAAAGTCCATGACTTAGTGGCATCACTTCTCTAAGTCCACGA
* ** *
2311381 CTTAGTGGCAAACTTTTTCCCTTTTAAGTCCACAACTCCCTGGCAACT-TCT-T-T-AGTCCACA
131 CTTAGAGG-AAACTTTTT-CCTTCCAAGTCCACAACTCACTGGCAACTCT-TATCTAAGTCCACA
* * *
2311442 ACTCTATAGCACATTTTTCCCTTTTAAGTCCACAACTTTGTGGCACCTTTTTC
193 ACTCTATAGCACA-TTTT-CCTTTTAAGTCCACAACTCTGTGACACCTTTTCC
** * ** * **
2311495 ATTTAAGTTTACAACTTCGTGGCACCTTTTTCATTTAAGTTTACAACACCGTGGGATCCTTTTAA
1 ATTTAAGTCCACAACTCCGTGGCACCTTTTTCATTTAAGTCCACAACACCATGCAATCCTTTTAA
* * * * *
2311560 GTCCACAACTCTGTGGCGCCCTTCAAAGTCCATTAGTTAGTGGCATCACTTCTCTAAGTCCATGA
66 GTCCACAACTCGGTGGCACCCTTCAAAGTCCATGACTTAGTGGCATCACTTCTCTAAGTCCACGA
* * * * * * * *
2311625 CTTAGAGGTAACTTTTTGCTTCCAAGTCCACGACTCAGTGGCATCTCTTATCTAAGTCTATACCT
131 CTTAGAGGAAACTTTTTCCTTCCAAGTCCACAACTCACTGGCAACTCTTATCTAAGTCCACAACT
* * *
2311690 CTGTGGCACATTTTCCTTTTAAGTCCATAACTCTGTGACACCTTTTCC
196 CTATAGCACATTTTCCTTTTAAGTCCACAACTCTGTGACACCTTTTCC
*
2311738 TTTTAAGTCCACAACTCCGTGGCACCTTTTT
1 ATTTAAGTCCACAACTCCGTGGCACCTTTTT
2311769 AAGTTTACAA
Statistics
Matches: 228, Mismatches: 42, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
242 23 0.10
243 67 0.29
244 122 0.54
245 16 0.07
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.36
Consensus pattern (243 bp):
ATTTAAGTCCACAACTCCGTGGCACCTTTTTCATTTAAGTCCACAACACCATGCAATCCTTTTAA
GTCCACAACTCGGTGGCACCCTTCAAAGTCCATGACTTAGTGGCATCACTTCTCTAAGTCCACGA
CTTAGAGGAAACTTTTTCCTTCCAAGTCCACAACTCACTGGCAACTCTTATCTAAGTCCACAACT
CTATAGCACATTTTCCTTTTAAGTCCACAACTCTGTGACACCTTTTCC
Found at i:2311714 original size:32 final size:32
Alignment explanation
Indices: 2311677--2311754 Score: 111
Period size: 32 Copynumber: 2.4 Consensus size: 32
2311667 ATCTCTTATC
* * *
2311677 TAAGTCTATACCTCTGTGGCACATTTTCCTTT
1 TAAGTCCATAACTCTGTGACACATTTTCCTTT
*
2311709 TAAGTCCATAACTCTGTGACACCTTTTCCTTT
1 TAAGTCCATAACTCTGTGACACATTTTCCTTT
*
2311741 TAAGTCCACAACTC
1 TAAGTCCATAACTC
2311755 CGTGGCACCT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.38
Consensus pattern (32 bp):
TAAGTCCATAACTCTGTGACACATTTTCCTTT
Found at i:2311764 original size:32 final size:32
Alignment explanation
Indices: 2311692--2311767 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
2311682 CTATACCTCT
* * *
2311692 GTGGCACATTTTCCTTTTAAGTCCATAACTCT
1 GTGGCACCTTTTCCTTTTAAGTCCACAACTCC
*
2311724 GTGACACCTTTTCCTTTTAAGTCCACAACTCC
1 GTGGCACCTTTTCCTTTTAAGTCCACAACTCC
2311756 GTGGCACCTTTT
1 GTGGCACCTTTT
2311768 TAAGTTTACA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.20, C:0.29, G:0.13, T:0.38
Consensus pattern (32 bp):
GTGGCACCTTTTCCTTTTAAGTCCACAACTCC
Found at i:2311778 original size:27 final size:27
Alignment explanation
Indices: 2311738--2311894 Score: 107
Period size: 27 Copynumber: 5.6 Consensus size: 27
2311728 CACCTTTTCC
*
2311738 TTTTAAGTCCACAACTCCGTGGCACCT
1 TTTTAAGTCCACAACTCCATGGCACCT
** *
2311765 TTTTAAGTTTACAACTCTATGGCACCT
1 TTTTAAGTCCACAACTCCATGGCACCT
* * * * **
2311792 TTTGAAGCCCATAACTCTATAACACCTTTT
1 TTTTAAGTCCACAACTCCATGGCACC---T
* *
2311822 TCCTTTAAGTCCACAACTCCGTGGCATCT
1 T--TTTAAGTCCACAACTCCATGGCACCT
* * *
2311851 TTTTAAGTCCAAAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCATGGCACCT
***
2311878 TCCAAAGTCCACAACTC
1 TTTTAAGTCCACAACTC
2311895 AGTCGCATCT
Statistics
Matches: 99, Mismatches: 26, Indels: 10
0.73 0.19 0.07
Matches are distributed among these distances:
27 78 0.79
29 2 0.02
30 2 0.02
32 17 0.17
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.31
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCATGGCACCT
Found at i:2311867 original size:86 final size:85
Alignment explanation
Indices: 2311704--2311876 Score: 240
Period size: 86 Copynumber: 2.0 Consensus size: 85
2311694 GGCACATTTT
* * *
2311704 CCTTTTAAGTCCATAACTCTGTGACACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
1 CCTTTTAAGCCCATAACTCTATAACACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
** * *
2311769 AAGTTTACAACTCTATGGCA
66 AAGTCCAAAACTCCATGGCA
*
2311789 CCTTTTGAAGCCCATAACTCTATAACACCTTTTTCC-TTTAAGTCCACAACTCCGTGGCATCTTT
1 CCTTTT-AAGCCCATAACTCTATAACACC-TTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTT
*
2311853 TTAAGTCCAAAACTCCGTGGCA
64 TTAAGTCCAAAACTCCATGGCA
2311875 CC
1 CC
2311877 CTCCAAAGTC
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
85 6 0.08
86 65 0.84
87 6 0.08
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (85 bp):
CCTTTTAAGCCCATAACTCTATAACACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
AAGTCCAAAACTCCATGGCA
Found at i:2312060 original size:32 final size:32
Alignment explanation
Indices: 2312012--2312749 Score: 320
Period size: 27 Copynumber: 23.8 Consensus size: 32
2312002 CTCTTCTCAC
* * *
2312012 AGTCCATAACTCCGTGGTACCTTTTCCATTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
*
2312044 AGTCCACAACTTCGTGGCACCTTTTTCCTTTTA
1 AGTCCACAACTCCGTGGCACC-TTTTCCTTTTA
*
2312077 AGTCTACAACTCCGTGGCACC---T--TTTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
**
2312104 AGTCCACAACTTAGTGGCACCTTTATCCCTTTTA
1 AGTCCACAACTCCGTGGCACCTTT-T-CCTTTTA
* * * * *
2312138 AGTTCACAACACCTTGGCACTTTTTTCCTTTCTT
1 AGTCCACAACTCCGTGGCAC-CTTTTCCTTT-TA
2312172 A--CCTACAACTCCGTGGCACC---T--TTTTA
1 AGTCC-ACAACTCCGTGGCACCTTTTCCTTTTA
*
2312198 AGTCCACAACTCTGTGGCACCTTTTTCCCTTTTA
1 AGTCCACAACTCCGTGGCACC-TTTT-CCTTTTA
* **
2312232 AGTCCACAACTCTGTGTTACC---T--TTTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
** *
2312259 AGTCCACAACTTTGTGGCACCTTTTTCCTTTTTC
1 AGTCCACAACTCCGTGGCACC-TTTTCC-TTTTA
** *
2312293 AGTCTGCAACTCTGTGGCACCTTTTCCCTTTTA
1 AGTCCACAACTCCGTGGCACCTTTT-CCTTTTA
* * *
2312326 AGTCCAAAACTCCATGGCACC----CC-TTAA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
* * * * **
2312353 AGTCCACAACTCAGTCGCATCTCTTCC--CCA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
*** ** * * **
2312383 AGTCCTTGACTTAGTGGCATTCTTTTTCTTCCAAA
1 AGTCCACAACTCCGTGGCA-CCTTTTCCTT--TTA
* ** * ***
2312418 AGTACACAACTTAGTGGCACCATTTTTCTCCCAA
1 AGTCCACAACTCCGTGGCACC-TTTTCCT-TTTA
* ** * * * *
2312452 AGTCCACGACTTAGTGGCATCTCTT--ATATA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
* * *
2312482 AGTCGATAACTCCATGGCACCTTTT-CTTTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
* * *
2312513 AGTCTACCACTCCGTGGTACCTTTTCCTTTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
* * **
2312545 AATCTACAACTCCGCAGCACC---T--TTTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
* * *
2312572 TGCCCACAACTTCGTGGCACCTTTATCCCTTTTA
1 AGTCCACAACTCCGTGGCACCTTT-T-CCTTTTA
*
2312606 AGTCCACAACTCCGTGGCACCTTTTTCCCTTCTA
1 AGTCCACAACTCCGTGGCACC-TTTT-CCTTTTA
*
2312640 AGTCCACAACTCCATGGCA-C--TT--TTTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
* *
2312667 AGTCCACAACTTCGTGGCACCTTATTCC-TGTA
1 AGTCCACAACTCCGTGGCACCTT-TTCCTTTTA
* *
2312699 AGTCCATAACTCCATGGCA-----TCCTTTTA
1 AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
*
2312726 AGTCCACAACTTCGTGGCACCTTT
1 AGTCCACAACTCCGTGGCACCTTT
2312750 CAAAATCCAG
Statistics
Matches: 533, Mismatches: 112, Indels: 122
0.69 0.15 0.16
Matches are distributed among these distances:
26 5 0.01
27 142 0.27
28 5 0.01
29 3 0.01
30 36 0.07
31 37 0.07
32 60 0.11
33 75 0.14
34 141 0.26
35 29 0.05
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (32 bp):
AGTCCACAACTCCGTGGCACCTTTTCCTTTTA
Found at i:2312121 original size:60 final size:61
Alignment explanation
Indices: 2312040--2312163 Score: 180
Period size: 61 Copynumber: 2.0 Consensus size: 61
2312030 ACCTTTTCCA
* * *
2312040 TTTAAGTCCACAACTTCGTGGCACCTTT-TTCCTTTTAAG-TCTACAACTCCGTGGCACCTT
1 TTTAAGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTC-ACAACACCGTGGCACCTT
* *
2312100 TTTAAGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTCACAACACCTTGGCACTTT
1 TTTAAGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTCACAACACCGTGGCACCTT
2312161 TTT
1 TTT
2312164 CCTTTCTTAC
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
60 27 0.47
61 28 0.49
62 2 0.04
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (61 bp):
TTTAAGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTCACAACACCGTGGCACCTT
Found at i:2312140 original size:34 final size:33
Alignment explanation
Indices: 2312099--2312336 Score: 136
Period size: 34 Copynumber: 7.5 Consensus size: 33
2312089 CGTGGCACCT
*
2312099 TTTTAAGTCCACAACTTAGTGGCACCTTTATCCC
1 TTTTAAGTCCACAACTT-GTGGCACCTTTTTCCC
* * *
2312133 TTTTAAGTTCACAACACCT-TGGCA-CTTTTTTCC
1 TTTTAAGTCCAC-A-ACTTGTGGCACCTTTTTCCC
* *
2312166 TTTCTTA--CCTACAACTCCGTGGCACC----T---
1 TTT-TAAGTCC-ACAACT-TGTGGCACCTTTTTCCC
2312193 TTTTAAGTCCACAACTCTGTGGCACCTTTTTCCC
1 TTTTAAGTCCACAACT-TGTGGCACCTTTTTCCC
* *
2312227 TTTTAAGTCCACAACTCTGT-G------TTACCT
1 TTTTAAGTCCACAACT-TGTGGCACCTTTTTCCC
*
2312254 TTTTAAGTCCACAACTTTGTGGCACCTTTTTCCT
1 TTTTAAGTCCACAAC-TTGTGGCACCTTTTTCCC
* **
2312288 TTTTCAGTCTGCAACTCTGTGGCACC-TTTTCCC
1 TTTTAAGTCCACAACT-TGTGGCACCTTTTTCCC
*
2312321 TTTTAAGTCCAAAACT
1 TTTTAAGTCCACAACT
2312337 CCATGGCACC
Statistics
Matches: 158, Mismatches: 21, Indels: 51
0.69 0.09 0.22
Matches are distributed among these distances:
26 2 0.01
27 40 0.25
28 4 0.03
30 1 0.01
31 3 0.02
32 2 0.01
33 37 0.23
34 65 0.41
35 1 0.01
36 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.11, T:0.39
Consensus pattern (33 bp):
TTTTAAGTCCACAACTTGTGGCACCTTTTTCCC
Found at i:2312147 original size:94 final size:93
Alignment explanation
Indices: 2312025--2312749 Score: 414
Period size: 94 Copynumber: 7.8 Consensus size: 93
2312015 CCATAACTCC
* * * *
2312025 GTGGTACCTTTT-CCATTTAAGTCCACAACTTCGTGGCACCTTTTTCCTTTTAAGTCTACAACTC
1 GTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTC
2312089 CGTGGCACCTTTTTAAGTCCACAACTTA
66 CGTGGCACCTTTTTAAGTCCACAACTTA
* * * * *
2312117 GTGGCACCTTTATCCCTTTTAAGTTCACAACACCTTGGCACTTTTTTCCTTTCTTA--CCTACAA
1 GTGGCACCTTT-TCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTT-TAAGTCC-ACAA
2312180 CTCCGTGGCACCTTTTTAAGTCCACAACTCT-
63 CTCCGTGGCACCTTTTTAAGTCCACAACT-TA
* **
2312211 GTGGCACCTTTTTCCCTTTTAAGTCCACAACTCTGTGTTACC----T--TTTTAAGTCCACAACT
1 GTGGCACC-TTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACT
** * **
2312270 TTGTGGCACCTTTTTCCTTTTTCAGTCTGCAACTCT-
65 CCGTGGCA-------CCTTTTTAAGTCCACAACT-TA
* * *
2312306 GTGGCACCTTTTCCCTTTTAAGTCCAAAACTCCATGGCACC-----CC-TTAAAGTCCACAACTC
1 GTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTC
* * *** ***
2312365 AGTCGCATCTCTTCCCCAAGTCCTTGACTTA
66 CGTGGCA-C-CTT-TTTAAGTCCACAACTTA
* * ** * ** ***
2312396 GTGGCATTCTTTT-TCTTCCAAAAGTACACAACTTAGTGGCACCATTTTT-CTCCCAAAGTCCAC
1 GTGGCA-CCTTTTCCCTT--TTAAGTCCACAACTCCGTGGCACC-TTTTTCCT-TTTAAGTCCAC
* ** * * * *
2312459 GACTTAGTGGCATCTCTTATATAAGTCGATAACTCCA
61 AACTCCGTGGCA-C-CTT-TTTAAGTCCACAACT-TA
* * * * *
2312496 -TGGCACCTTTT--CTTTTAAGTCTACCACTCCGTGGTACC-TTTTCCTTTTAAATCTACAACTC
1 GTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTC
** * * *
2312557 CGCAGCACCTTTTTATGCCCACAACTTC
66 CGTGGCACCTTTTTAAGTCCACAACTTA
*
2312585 GTGGCACCTTTATCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTCTAAGTCCACAAC
1 GTGGCACCTTT-TCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTT-CCTTTTAAGTCCACAAC
* * *
2312650 TCCATGGCACTTTTTTAAGTCCACAACTTC
64 TCCGTGGCACCTTTTTAAGTCCACAACTTA
* * *
2312680 GTGGCACCTTATT-CC-TGTAAGTCCATAACTCCATGGCA------TCCTTTTAAGTCCACAACT
1 GTGGCACCTT-TTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACT
*
2312737 TCGTGGCACCTTT
65 CCGTGGCACCTTT
2312750 CAAAATCCAG
Statistics
Matches: 487, Mismatches: 106, Indels: 86
0.72 0.16 0.13
Matches are distributed among these distances:
86 27 0.06
87 3 0.01
88 17 0.03
89 6 0.01
90 37 0.08
91 9 0.02
92 28 0.06
93 63 0.13
94 151 0.31
95 97 0.20
96 1 0.00
97 4 0.01
98 5 0.01
99 38 0.08
100 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (93 bp):
GTGGCACCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACTC
CGTGGCACCTTTTTAAGTCCACAACTTA
Found at i:2312254 original size:61 final size:61
Alignment explanation
Indices: 2312176--2312317 Score: 212
Period size: 61 Copynumber: 2.3 Consensus size: 61
2312166 TTTCTTACCT
*
2312176 ACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCC
1 ACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCC
** * * * *
2312237 ACAACTCTGTGTTACCTTTTTAAGTCCACAACTTTGTGGCACCTTTTTCCTTTTTCAGTCT
1 ACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCC
*
2312298 GCAACTCTGTGGCACCTTTT
1 ACAACTCTGTGGCACCTTTT
2312318 CCCTTTTAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 71 1.00
ACGTcount: A:0.18, C:0.30, G:0.13, T:0.39
Consensus pattern (61 bp):
ACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCC
Found at i:2312337 original size:155 final size:155
Alignment explanation
Indices: 2312040--2312749 Score: 415
Period size: 154 Copynumber: 4.6 Consensus size: 155
2312030 ACCTTTTCCA
*
2312040 TTTAAGTCCACAACT-TCGTGGCACCTTTTTCCTTTTAAGTCTACAACTCCGTGGCACCTTTTTA
1 TTTAAGTCCACAACTCTCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTA
* *
2312104 AGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTCACAACACCTTGGCACTTTTTTCCTTT
66 AGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTCACAACACCTTGGCACCTTTTCCCTTT
* * * **
2312169 CTTACCTACAACTCCGTGGCACCTT
131 CTAACCTAAAACTCCATGGCACCCC
* **
2312194 TTTAAGTCCACAACTCT-GTGGCACCTTTTTCCCTTTTAAGTCCACAACTCTGTGTTACCTTTTT
1 TTTAAGTCCACAACTCTCGTGGCACCTTTTT-CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * * * * *
2312258 AAGTCCACAACTTTGTGGCACCTTTTTCCTTTTTCAG-TCTGCAAC-TCTGTGGCACCTTTTCCC
65 AAGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTC-ACAACACCT-TGGCACCTTTTCCC
2312321 TTT-TAAGTCC-AAAACTCCATGGCACCCC
128 TTTCTAA--CCTAAAACTCCATGGCACCCC
* * * * * ** *** ** *
2312349 TTAAAGTCCACAACTC-AGTCGCATC-TCTTCC--CCAAGTCCTTGACTTAGTGGCATTCTTTTT
1 TTTAAGTCCACAACTCTCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA--C-CTTT
* * ** * * ****
2312410 CTTCCAAAAGTACACAACTTAGTGGCACCATTTTTCTCC--CAAAGTCCACGACTTAGTGGCA--
63 -TT----AAGTCCACAACTTAGTGGCACC-TTTATC-CCTTTTAAGTTCACAACACCTTGGCACC
* * * * * *
2312471 ---TCTCTTATATAAGTCGATAACTCCATGGCACCTTTTCT
121 TTTTCCCTT-TCTAA-CCTAAAACTCCATGGCACC----CC
* * * * * **
2312509 TTTAAGTCTACCACTC-CGTGGTACC-TTTTCCTTTTAAATCTACAACTCCGCAGCACCTTTTTA
1 TTTAAGTCCACAACTCTCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTA
* * * * * *
2312572 TGCCCACAACTTCGTGGCACCTTTATCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCC-T
66 AGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTCACAACACCTTGGCACC-TTTTCCCTT
* ***
2312636 TCTAAGTCC-ACAACTCCATGGCACTTT
130 TCTAA--CCTAAAACTCCATGGCACCCC
* * * *
2312663 TTTAAGTCCACAACT-TCGTGGCACCTTATTCC-TGTAAGTCCATAACTCCATGGCATCC-TTTT
1 TTTAAGTCCACAACTCTCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTTT
*
2312725 AAGTCCACAACTTCGTGGCACCTTT
65 AAGTCCACAACTTAGTGGCACCTTT
2312750 CAAAATCCAG
Statistics
Matches: 419, Mismatches: 97, Indels: 80
0.70 0.16 0.13
Matches are distributed among these distances:
151 13 0.03
152 2 0.00
153 8 0.02
154 145 0.35
155 128 0.31
156 20 0.05
158 20 0.05
159 35 0.08
160 36 0.09
161 1 0.00
162 11 0.03
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (155 bp):
TTTAAGTCCACAACTCTCGTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTA
AGTCCACAACTTAGTGGCACCTTTATCCCTTTTAAGTTCACAACACCTTGGCACCTTTTCCCTTT
CTAACCTAAAACTCCATGGCACCCC
Found at i:2312464 original size:34 final size:35
Alignment explanation
Indices: 2312390--2312472 Score: 107
Period size: 34 Copynumber: 2.4 Consensus size: 35
2312380 CCAAGTCCTT
*
2312390 GACTTAGTGGCATTCTTTTTCTTCCAAAAGTACAC
1 GACTTAGTGGCATCCTTTTTCTTCCAAAAGTACAC
* * *
2312425 AACTTAGTGGCA-CCATTTTTC-TCCCAAAGTCCAC
1 GACTTAGTGGCATCC-TTTTTCTTCCAAAAGTACAC
2312459 GACTTAGTGGCATC
1 GACTTAGTGGCATC
2312473 TCTTATATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
34 23 0.56
35 18 0.44
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.33
Consensus pattern (35 bp):
GACTTAGTGGCATCCTTTTTCTTCCAAAAGTACAC
Found at i:2312628 original size:93 final size:93
Alignment explanation
Indices: 2312496--2312724 Score: 252
Period size: 93 Copynumber: 2.5 Consensus size: 93
2312486 GATAACTCCA
* * * * *
2312496 TGGCACCTTT-T-CTTTTAAGTCTACCACTCCGTGGTACCTTTT-CCTTTTAAATCTACAACTCC
1 TGGCACCTTTATCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCCTTCTAAATCCACAACTCC
* *
2312558 GCAGCACCTTTTTATGCCCACAACTTCG
66 ACAGCACCTTTTTAAGCCCACAACTTCG
*
2312586 TGGCACCTTTATCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTCTAAGTCCACAACT
1 TGGCACCTTTAT-CCTTTTAAGTCCACAACTCCGTGGCACC-TTTTCCCTTCTAAATCCACAACT
** * *
2312651 CCATGGCACTTTTTTAAGTCCACAACTTCG
64 CCACAGCACCTTTTTAAGCCCACAACTTCG
* * *
2312681 TGGCACC-TTATTCC-TGTAAGTCCATAACTCCATGGCATCCTTTT
1 TGGCACCTTTA-TCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTT
2312725 AAGTCCACAA
Statistics
Matches: 117, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
90 10 0.09
91 1 0.01
93 48 0.41
94 11 0.09
95 47 0.40
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (93 bp):
TGGCACCTTTATCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCCTTCTAAATCCACAACTCC
ACAGCACCTTTTTAAGCCCACAACTTCG
Found at i:2312711 original size:59 final size:61
Alignment explanation
Indices: 2312599--2312748 Score: 225
Period size: 59 Copynumber: 2.5 Consensus size: 61
2312589 CACCTTTATC
* *
2312599 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTCTAAGTCCACAACTCCATGGCA-
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTATTCCCTTCTAAGTCCACAACTCCATGGCAT
* * *
2312659 CTTTTTTAAGTCCACAACTTCGTGGCACCTTATT-CC-TGTAAGTCCATAACTCCATGGCAT
1 C-CTTTTAAGTCCACAACTTCGTGGCACCTTATTCCCTTCTAAGTCCACAACTCCATGGCAT
2312719 CCTTTTAAGTCCACAACTTCGTGGCACCTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTT
2312749 TCAAAATCCA
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
59 49 0.60
60 4 0.05
61 29 0.35
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.33
Consensus pattern (61 bp):
CCTTTTAAGTCCACAACTTCGTGGCACCTTATTCCCTTCTAAGTCCACAACTCCATGGCAT
Found at i:2312806 original size:35 final size:34
Alignment explanation
Indices: 2312765--2312910 Score: 125
Period size: 35 Copynumber: 4.3 Consensus size: 34
2312755 TCCAGGACTT
* * **
2312765 AGTGGCATCCTCTTACTTCCAAAAGTCCACGGCTTC
1 AGTGGCATCCTTTTTC-TCCAAAAGTCCACAAC-TC
*
2312801 A-TGGCATCCTTTTTCTCC-CAAGTCCACAACTC
1 AGTGGCATCCTTTTTCTCCAAAAGTCCACAACTC
** *
2312833 AGTGGCATCCTTTTTCGTCCAAAAGTCCATGACTT
1 AGTGGCATCCTTTTTC-TCCAAAAGTCCACAACTC
* * * * *
2312868 AGTGCCATCCTTTTTGTCCCAAGGTCCACGACTC
1 AGTGGCATCCTTTTTCTCCAAAAGTCCACAACTC
*
2312902 AATGGCATC
1 AGTGGCATC
2312911 TCTTCTCTAG
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
32 3 0.03
33 23 0.26
34 27 0.30
35 36 0.40
36 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.16, T:0.30
Consensus pattern (34 bp):
AGTGGCATCCTTTTTCTCCAAAAGTCCACAACTC
Found at i:2312877 original size:68 final size:69
Alignment explanation
Indices: 2312765--2312914 Score: 189
Period size: 68 Copynumber: 2.2 Consensus size: 69
2312755 TCCAGGACTT
* * *
2312765 AGTGGCATCCTCTTACTTCCAAAAGTCCACGGCTTCATGGCATCCTTTTTCTCCCAA-GTCCACA
1 AGTGGCATCCTCTTACGTCCAAAAGTCCACGACTTCATGCCATCCTTTTTCTCCCAAGGTCCACA
2312829 ACTC
66 ACTC
* * * *
2312833 AGTGGCATCCTTTTTCGTCCAAAAGTCCATGACTT-AGTGCCATCCTTTTTGTCCCAAGGTCCAC
1 AGTGGCATCCTCTTACGTCCAAAAGTCCACGACTTCA-TGCCATCCTTTTTCTCCCAAGGTCCAC
*
2312897 GACTC
65 AACTC
*
2312902 AATGGCAT-CTCTT
1 AGTGGCATCCTCTT
2312915 CTCTAGGTCC
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 1 0.01
68 52 0.74
69 17 0.24
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.31
Consensus pattern (69 bp):
AGTGGCATCCTCTTACGTCCAAAAGTCCACGACTTCATGCCATCCTTTTTCTCCCAAGGTCCACA
ACTC
Found at i:2313029 original size:438 final size:421
Alignment explanation
Indices: 2312395--2313287 Score: 875
Period size: 438 Copynumber: 2.1 Consensus size: 421
2312385 TCCTTGACTT
* * ** *
2312395 AGTGGCATTCTTTTTCTTCCAAAAGTACACAACTTAGTGGCACCATTTTTCTCCCAAAGTCCACG
1 AGTGGCATCCTTTTTC-TCCAAAAGTCCATGACTTAGTGCCACCATTTTTCTCCCAAAGTCCACG
* * * * * ** * *
2312460 ACTTAGTGGCATCTCTTATATAAGTCGATAACTCCATGGCACCTTTTCTTTTAAGTCTACCACTC
65 ACTCAATGGCATCTCTTATATAAGTCCAAAACTCCATGGCACATTCCCATTTAAGTCCACCACTC
* * * * *
2312525 CGTGGTACCTTTTCCTTTTAAATCTACAACTCCGCAGCACCTTTTTATGCCCACAACTTCGTGGC
130 CGGGGCACCTTTTCCTTTTAAATCCACAACTACGCAGCACCTTTTTAAGCCCACAACTTCGTGGC
* * *
2312590 ACCTTTATCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTCTAAGTCCACAACTCCAT
195 ACC---A----TTTTAAGTCCACAACTCCATGGCA------T-CCTTCTAAGTCCACAACGCCAC
** * * * *
2312655 GGCACTTTTTTAAGTCCACAACTTCGTGGC-ACCTTATTCCTGT-AAGTCCATAACTCCATGGCA
246 GGCACCATTTTAAGTCCACAACTCCATGGCAACCTTATTCCT-TCAACTCCACAACTCCATGGCA
* * * *
2312718 TCCTTTTAAGTCCACAACTTCGTGGCACCTTTCAAAATCCAGGACTTAGTGGCATCCTCTTACTT
310 TCCTTTTAAGTCCACAACTTCGTGGCACCCTTCAAAATCCACGACTCAGTCGCAT-CTCTT-CTT
*
2312783 CCAAAAGTCCACGGCTTCA-TGGCATCCTTTTTC-TCC-CAAGTCCACAACTC
373 ---AAAGTCCACGACTT-AGTGGCATCCTTTTTCTTCCACAAGTCCACAACTC
* *
2312833 AGTGGCATCCTTTTTCGTCCAAAAGTCCATGACTTAGTGCCATCC-TTTTTGTCCCAAGGTCCAC
1 AGTGGCATCCTTTTTC-TCCAAAAGTCCATGACTTAGTGCCA-CCATTTTTCTCCCAAAGTCCAC
* * * * *
2312897 GACTCAATGGCATCTCTTCTCTAGGTCCAAAACTCCGTGGCACATTCCCATTTCAGTCCA-CACC
64 GACTCAATGGCATCTCTTATATAAGTCCAAAACTCCATGGCACATTCCCATTTAAGTCCACCA-C
* * * * ** * *
2312961 TTCGGGGCACCTTTTCTTTTTAAGTCCACAACTATGTGGCACCTTTTTAAGTCTACAAC-TCTGT
128 TCCGGGGCACCTTTTCCTTTTAAATCCACAACTACGCAGCACCTTTTTAAGCCCACAACTTC-GT
* **
2313025 GGCACCATTTTAAGTCCACAACTCCATGGCATCCTTTTAAGTCCACAACGCTGCGGCACCATTTT
192 GGCACCATTTTAAGTCCACAACTCCATGGCATCCTTCTAAGTCCACAACGCCACGGCACCATTTT
* ** * * * *
2313090 ATGTCCACAACTCCATGGCAATTTTTTTCCTTCAACTTCACAACTCCGTGGCATCCTTTTATGTC
257 AAGTCCACAACTCCATGGCAACCTTATTCCTTCAACTCCACAACTCCATGGCATCCTTTTAAGTC
* * * *
2313155 CACAATTTCGTGGCACCCTTCAAATTCCACGACTCAGTCGCATCTCTTCTTTAAGTCCATGACTT
322 CACAACTTCGTGGCACCCTTCAAAATCCACGACTCAGTCGCATCTCTTCTTAAAGTCCACGACTT
* * * * *
2313220 AGTGGCTTCTTTTTTCTTCCAGAAGTCTACAACTT
387 AGTGGCATCCTTTTTCTTCCACAAGTCCACAACTC
* *
2313255 AGAGGCATCCTTTTTCTCCCAAAGTCCATGACT
1 AGTGGCATCCTTTTTCTCCAAAAGTCCATGACT
2313288 CAATGGCATC
Statistics
Matches: 377, Mismatches: 70, Indels: 33
0.79 0.15 0.07
Matches are distributed among these distances:
419 1 0.00
420 23 0.06
421 19 0.05
422 26 0.07
423 3 0.01
424 48 0.13
425 73 0.19
431 23 0.06
435 1 0.00
437 4 0.01
438 154 0.41
439 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.33
Consensus pattern (421 bp):
AGTGGCATCCTTTTTCTCCAAAAGTCCATGACTTAGTGCCACCATTTTTCTCCCAAAGTCCACGA
CTCAATGGCATCTCTTATATAAGTCCAAAACTCCATGGCACATTCCCATTTAAGTCCACCACTCC
GGGGCACCTTTTCCTTTTAAATCCACAACTACGCAGCACCTTTTTAAGCCCACAACTTCGTGGCA
CCATTTTAAGTCCACAACTCCATGGCATCCTTCTAAGTCCACAACGCCACGGCACCATTTTAAGT
CCACAACTCCATGGCAACCTTATTCCTTCAACTCCACAACTCCATGGCATCCTTTTAAGTCCACA
ACTTCGTGGCACCCTTCAAAATCCACGACTCAGTCGCATCTCTTCTTAAAGTCCACGACTTAGTG
GCATCCTTTTTCTTCCACAAGTCCACAACTC
Found at i:2313055 original size:54 final size:54
Alignment explanation
Indices: 2312978--2313109 Score: 185
Period size: 54 Copynumber: 2.4 Consensus size: 54
2312968 CACCTTTTCT
*** * * *
2312978 TTTTAAGTCCACAACTATGTGGCA-CCTTTTTAAGTCTACAACTCTGTGGCACCA
1 TTTTAAGTCCACAACTCCATGGCATCC-TTTTAAGTCCACAACGCTGCGGCACCA
2313032 TTTTAAGTCCACAACTCCATGGCATCCTTTTAAGTCCACAACGCTGCGGCACCA
1 TTTTAAGTCCACAACTCCATGGCATCCTTTTAAGTCCACAACGCTGCGGCACCA
*
2313086 TTTTATGTCCACAACTCCATGGCA
1 TTTTAAGTCCACAACTCCATGGCA
2313110 ATTTTTTTCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
54 68 0.97
55 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (54 bp):
TTTTAAGTCCACAACTCCATGGCATCCTTTTAAGTCCACAACGCTGCGGCACCA
Found at i:2313109 original size:27 final size:27
Alignment explanation
Indices: 2312978--2313102 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
2312968 CACCTTTTCT
* *
2312978 TTTTAAGTCCACAACTATGTGGCACCT
1 TTTTAAGTCCACAACTCTGTGGCACCA
*
2313005 TTTTAAGTCTACAACTCTGTGGCACCA
1 TTTTAAGTCCACAACTCTGTGGCACCA
**
2313032 TTTTAAGTCCACAACTCCATGGCATCC-
1 TTTTAAGTCCACAACTCTGTGGCA-CCA
* *
2313059 TTTTAAGTCCACAACGCTGCGGCACCA
1 TTTTAAGTCCACAACTCTGTGGCACCA
*
2313086 TTTTATGTCCACAACTC
1 TTTTAAGTCCACAACTC
2313103 CATGGCAATT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 80 0.95
28 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.31
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCTGTGGCACCA
Found at i:2313116 original size:27 final size:27
Alignment explanation
Indices: 2312978--2313116 Score: 84
Period size: 27 Copynumber: 5.1 Consensus size: 27
2312968 CACCTTTTCT
*** *
2312978 TTTTAAGTCCACAACTATGTGGCACCT-
1 TTTTAAGTCCACAACTCCATGGCA-ATA
* ** **
2313005 TTTTAAGTCTACAACTCTGTGGCACCA
1 TTTTAAGTCCACAACTCCATGGCAATA
*
2313032 TTTTAAGTCCACAACTCCATGGC-ATCC
1 TTTTAAGTCCACAACTCCATGGCAAT-A
* *** **
2313059 TTTTAAGTCCACAACGCTGCGGCACCA
1 TTTTAAGTCCACAACTCCATGGCAATA
* *
2313086 TTTTATGTCCACAACTCCATGGCAATT
1 TTTTAAGTCCACAACTCCATGGCAATA
2313113 TTTT
1 TTTT
2313117 TCCTTCAACT
Statistics
Matches: 85, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
26 1 0.01
27 84 0.99
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCATGGCAATA
Found at i:2313246 original size:35 final size:34
Alignment explanation
Indices: 2313207--2313305 Score: 99
Period size: 35 Copynumber: 2.9 Consensus size: 34
2313197 TCTCTTCTTT
* *
2313207 AAGTCCATGACTTAGTGGCTTCTTTTTTCTTCCA
1 AAGTCCATGACTTAGTGGCATCTTTTTTCTCCCA
* ** * *
2313241 GAAGTCTACAACTTAGAGGCATCCTTTTTCTCCCA
1 -AAGTCCATGACTTAGTGGCATCTTTTTTCTCCCA
* * *
2313276 AAGTCCATGACTCAATGGCATCTCTTTTCT
1 AAGTCCATGACTTAGTGGCATCTTTTTTCT
2313306 AAGAGCACAG
Statistics
Matches: 49, Mismatches: 15, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
34 22 0.45
35 27 0.55
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.37
Consensus pattern (34 bp):
AAGTCCATGACTTAGTGGCATCTTTTTTCTCCCA
Found at i:2313415 original size:27 final size:27
Alignment explanation
Indices: 2313364--2313752 Score: 141
Period size: 27 Copynumber: 13.5 Consensus size: 27
2313354 GCCACCTTCT
* **
2313364 CCTTTTAAGTCCATAACTCTATGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
2313391 CCTTTTAAATCCACAACTCCGTGGCTC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
2313418 CTTTTTAA-TATCACAACTTCGGGGCACCTTTTTC
1 CCTTTTAAGT-CCACAACTCCGTGGCA-------C
* *
2313452 CCTTTTAAGTCCACAACTTCATGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
** * *
2313479 TTTTTTAAGTCCCCAACTCCATGGCATC
1 CCTTTTAAGTCCACAACTCCGTGGCA-C
* * * * *
2313507 ACTTCTCTAAATCCATAATTTCGTGGCACC
1 CCTT-T-TAAGTCCACAACTCCGTGGCA-C
*
2313537 TTTTCCTTTTAAGTCCACAACTCCATGGCAC
1 ----CCTTTTAAGTCCACAACTCCGTGGCAC
* * *** *
2313568 CTTTTCCTTTAAGTCCACAATTTTTTGGCAT
1 C----CTTTTAAGTCCACAACTCCGTGGCAC
* *
2313599 CCTTTTAAGTCCAAAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * *
2313626 CTTTTTAAGTCCACAACTCCGCGACAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
** *
2313653 TTTTTTAAGTCCAAAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * ** *
2313680 CTTTTTCTTTTAAGTCCATAATTTTGTGGCAT
1 C-----CTTTTAAGTCCACAACTCCGTGGCAC
* * *
2313712 CCTTTTAAGCCCACAACTCCATAGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
**
2313739 CCTTCAAAGTCCAC
1 CCTTTTAAGTCCAC
2313753 GACTTAGTGG
Statistics
Matches: 265, Mismatches: 72, Indels: 50
0.68 0.19 0.13
Matches are distributed among these distances:
26 1 0.00
27 159 0.60
28 3 0.01
29 1 0.00
30 16 0.06
31 22 0.08
32 37 0.14
33 1 0.00
34 24 0.09
35 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.11, T:0.35
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:2313476 original size:88 final size:89
Alignment explanation
Indices: 2313356--2313572 Score: 248
Period size: 88 Copynumber: 2.5 Consensus size: 89
2313346 AACTACGTGC
* * *
2313356 CACCTTCTCCTTTTAAGTCCATAAC-TCTATGGCACCCTTTTAAATCCACAACTCCGTGGC-TC-
1 CACCTTTTCCTTTTAAGTCCACAACTTC-ATGGCACCCTTTTAAATCCACAACTCCATGGCATCA
*
2313418 CTT-TTTAATAT-CACAACTTCGGGG
65 CTTCTCTAA-ATCCACAACTTCGGGG
** * *
2313442 CACCTTTTTCCCTTTTAAGTCCACAACTTCATGGCACTTTTTTAAGTCCCCAACTCCATGGCATC
1 CACC-TTTT-CCTTTTAAGTCCACAACTTCATGGCACCCTTTTAAATCCACAACTCCATGGCATC
* * *
2313507 ACTTCTCTAAATCCATAATTTCGTGG
64 ACTTCTCTAAATCCACAACTTCGGGG
*
2313533 CACCTTTTCCTTTTAAGTCCACAACTCCATGGCA-CCTTTT
1 CACCTTTTCCTTTTAAGTCCACAACTTCATGGCACCCTTTT
2313573 CCTTTAAGTC
Statistics
Matches: 110, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
86 4 0.04
87 3 0.03
88 47 0.43
89 29 0.26
90 9 0.08
91 18 0.16
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (89 bp):
CACCTTTTCCTTTTAAGTCCACAACTTCATGGCACCCTTTTAAATCCACAACTCCATGGCATCAC
TTCTCTAAATCCACAACTTCGGGG
Found at i:2313604 original size:32 final size:32
Alignment explanation
Indices: 2313318--2313587 Score: 135
Period size: 27 Copynumber: 8.9 Consensus size: 32
2313308 GAGCACAGCC
** * *
2313318 CCATGGCATTTTTTCCTTCTAAGTCTACAACT
1 CCATGGCACCTTTTCCTTTTAAGTCCACAACT
* * * * *
2313350 ACGTGCCACCTTCTCCTTTTAAGTCCATAACT
1 CCATGGCACCTTTTCCTTTTAAGTCCACAACT
* *
2313382 CTATGGCA-C----CCTTTTAAATCCACAACT
1 CCATGGCACCTTTTCCTTTTAAGTCCACAACT
* * **
2313409 CCGTGGCTCCTTTT--TAAT-A-T-CACAACT
1 CCATGGCACCTTTTCCTTTTAAGTCCACAACT
* **
2313436 TCGGGGCACCTTTTTCCCTTTTAAGTCCACAACT
1 CCATGGCACC-TTTT-CCTTTTAAGTCCACAACT
* *
2313470 TCATGGCA-C--TT--TTTTAAGTCCCCAACT
1 CCATGGCACCTTTTCCTTTTAAGTCCACAACT
* ** * * * *
2313497 CCATGGCATCACTT-C-TCTAAATCCATAATT
1 CCATGGCACCTTTTCCTTTTAAGTCCACAACT
* *
2313527 TCGTGGCACCTTTTCCTTTTAAGTCCACAACT
1 CCATGGCACCTTTTCCTTTTAAGTCCACAACT
2313559 CCATGGCACCTTTTCC-TTTAAGTCCACAA
1 CCATGGCACCTTTTCCTTTTAAGTCCACAA
2313588 TTTTTTGGCA
Statistics
Matches: 175, Mismatches: 45, Indels: 37
0.68 0.18 0.14
Matches are distributed among these distances:
27 57 0.33
28 7 0.04
29 1 0.01
30 25 0.14
31 17 0.10
32 53 0.30
33 2 0.01
34 13 0.07
ACGTcount: A:0.23, C:0.31, G:0.10, T:0.35
Consensus pattern (32 bp):
CCATGGCACCTTTTCCTTTTAAGTCCACAACT
Found at i:2313709 original size:32 final size:33
Alignment explanation
Indices: 2313655--2313717 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
2313645 CGCGACACTT
2313655 TTTTAAGTCCAAAACTCCGTGGCA-CCTTTTTC
1 TTTTAAGTCCAAAACTCCGTGGCATCCTTTTTC
* * **
2313687 TTTTAAGTCCATAATTTTGTGGCATCCTTTT
1 TTTTAAGTCCAAAACTCCGTGGCATCCTTTT
2313718 AAGCCCACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (33 bp):
TTTTAAGTCCAAAACTCCGTGGCATCCTTTTTC
Found at i:2313749 original size:113 final size:112
Alignment explanation
Indices: 2313543--2313752 Score: 294
Period size: 113 Copynumber: 1.9 Consensus size: 112
2313533 CACCTTTTCC
* *
2313543 TTTTAAGTCCACAACTCCATGGCACCTTTTCCTTTAAGTCCACAATTTTTTGGCATCCTTTTAAG
1 TTTTAAGTCCAAAACTCCATGGCACCTTTTCCTTTAAGTCCACAATTTTGTGGCATCCTTTTAAG
* ** * * **
2313608 TCCAAAACTCTGTGGCACCTTTTTAAGTCCACAACTCCGCGACACTT
66 CCCAAAACTCCATAGCACCCTTCAAAGTCCACAACTCCGCGACACTT
* * *
2313655 TTTTAAGTCCAAAACTCCGTGGCACCTTTTTCTTTTAAGTCCATAATTTTGTGGCATCCTTTTAA
1 TTTTAAGTCCAAAACTCCATGGCACC-TTTTCCTTTAAGTCCACAATTTTGTGGCATCCTTTTAA
*
2313720 GCCCACAACTCCATAGCACCCTTCAAAGTCCAC
65 GCCCAAAACTCCATAGCACCCTTCAAAGTCCAC
2313753 GACTTAGTGG
Statistics
Matches: 84, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
112 24 0.29
113 60 0.71
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (112 bp):
TTTTAAGTCCAAAACTCCATGGCACCTTTTCCTTTAAGTCCACAATTTTGTGGCATCCTTTTAAG
CCCAAAACTCCATAGCACCCTTCAAAGTCCACAACTCCGCGACACTT
Found at i:2313779 original size:30 final size:30
Alignment explanation
Indices: 2313745--2313906 Score: 107
Period size: 33 Copynumber: 5.3 Consensus size: 30
2313735 GCACCCTTCA
2313745 AAGTCCACGACTTAGTGGCATCTCTTCTCT
1 AAGTCCACGACTTAGTGGCATCTCTTCTCT
* * * *
2313775 AAGTCCCCGACTTAGTGCCATCCTTTTTCTTCC
1 AAGTCCACGACTTAGTGGCAT-C-TCTTC-TCT
* * * *
2313808 AAGTCCACGACTCAGTGACATCCTTTTTCTTCCAA
1 AAGTCCACGACTTAGTGGCAT-C-TCTTC-T-C-T
2313843 AAGTCCACGACTTAGTGGCATC-C-T-T-T
1 AAGTCCACGACTTAGTGGCATCTCTTCTCT
* * * *
2313869 ATGTCCACGACTCAATAGCATCTCTTCTCT
1 AAGTCCACGACTTAGTGGCATCTCTTCTCT
*
2313899 AATTCCAC
1 AAGTCCAC
2313907 AACTCCAGGT
Statistics
Matches: 105, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
26 18 0.17
27 1 0.01
28 1 0.01
29 2 0.02
30 26 0.25
31 2 0.02
32 4 0.04
33 30 0.29
34 2 0.02
35 19 0.18
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (30 bp):
AAGTCCACGACTTAGTGGCATCTCTTCTCT
Found at i:2313819 original size:33 final size:33
Alignment explanation
Indices: 2313740--2313868 Score: 156
Period size: 33 Copynumber: 3.9 Consensus size: 33
2313730 CCATAGCACC
* *
2313740 CTTCAAAGTCCACGACTTAGTGGCAT-C-TCTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* * *
2313771 C-TCTAAGTCCCCGACTTAGTGCCATCCTTTTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* *
2313803 CTTCCAAGTCCACGACTCAGTGACATCCTTTTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
2313836 CTTCCAAAAGTCCACGACTTAGTGGCATCCTTT
1 CTTCC--AAGTCCACGACTTAGTGGCATCCTTT
2313869 ATGTCCACGA
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.25
31 2 0.02
32 4 0.05
33 32 0.39
35 24 0.29
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.33
Consensus pattern (33 bp):
CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
Found at i:2314087 original size:27 final size:27
Alignment explanation
Indices: 2314032--2314092 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
2314022 CACCTTTTTT
*
2314032 CCATTTTAAGTCCACAACTCCACGACA
1 CCATTTTAAGTCCACAACTCAACGACA
* * *
2314059 CCCTTTTAAGTCCACAACTCAATGGCA
1 CCATTTTAAGTCCACAACTCAACGACA
2314086 CCATTTT
1 CCATTTT
2314093 TCTTTAAGTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.34, G:0.08, T:0.28
Consensus pattern (27 bp):
CCATTTTAAGTCCACAACTCAACGACA
Found at i:2314168 original size:27 final size:30
Alignment explanation
Indices: 2314138--2314200 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
2314128 TCCATAACTC
2314138 TGTGGCA-C-CTT-TCAAAGTCCACGACTT
1 TGTGGCATCTCTTCTCAAAGTCCACGACTT
* *
2314165 TGTGGCATCTCTTCTCCAAGTTCACGACTT
1 TGTGGCATCTCTTCTCAAAGTCCACGACTT
*
2314195 AGTGGC
1 TGTGGC
2314201 GTCTTTTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 7 0.23
28 1 0.03
29 3 0.10
30 19 0.63
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.32
Consensus pattern (30 bp):
TGTGGCATCTCTTCTCAAAGTCCACGACTT
Found at i:2314344 original size:27 final size:27
Alignment explanation
Indices: 2314307--2314437 Score: 122
Period size: 27 Copynumber: 4.6 Consensus size: 27
2314297 CCCTTTTTCT
*
2314307 TTTTATGTCCACAACTCTATGGCACCC
1 TTTTAAGTCCACAACTCTATGGCACCC
*
2314334 TTTTAAATCCACAACT-T-TGCAGCACCTTTTTCC
1 TTTTAAGTCCACAACTCTATG--GCA-C-----CC
*
2314367 TTTTAAGTCCACAACTCTATTGCACCC
1 TTTTAAGTCCACAACTCTATGGCACCC
* *
2314394 TTTTAAGTCCACAACACTATGGCACCT
1 TTTTAAGTCCACAACTCTATGGCACCC
*
2314421 TTTTAAGTCCAAAACTC
1 TTTTAAGTCCACAACTC
2314438 CGCGGCATTT
Statistics
Matches: 85, Mismatches: 9, Indels: 20
0.75 0.08 0.18
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 58 0.68
28 1 0.01
32 1 0.01
33 20 0.24
34 1 0.01
35 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCTATGGCACCC
Found at i:2314419 original size:60 final size:58
Alignment explanation
Indices: 2314292--2314424 Score: 176
Period size: 60 Copynumber: 2.2 Consensus size: 58
2314282 CACAACTCCG
* * *
2314292 TGGCACCCTTTTTCTTTTTATGTCCACAACTCTATGGCACCCTTTTAAATCCACAACTT
1 TGGCA-CCTTTTTCCTTTTAAGTCCACAACTCTATGGCACCCTTTTAAATCCACAACTA
* *
2314351 TGCAGCACCTTTTTCCTTTTAAGTCCACAACTCTATTGCACCCTTTTAAGTCCACAACACTA
1 TG--GCACCTTTTTCCTTTTAAGTCCACAACTCTATGGCACCCTTTTAAATCCAC-A-ACTA
2314413 TGGCACCTTTTT
1 TGGCACCTTTTT
2314425 AAGTCCAAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
59 2 0.03
60 54 0.83
61 4 0.06
62 5 0.08
ACGTcount: A:0.23, C:0.31, G:0.09, T:0.38
Consensus pattern (58 bp):
TGGCACCTTTTTCCTTTTAAGTCCACAACTCTATGGCACCCTTTTAAATCCACAACTA
Found at i:2314529 original size:27 final size:27
Alignment explanation
Indices: 2314367--2314575 Score: 105
Period size: 27 Copynumber: 7.4 Consensus size: 27
2314357 ACCTTTTTCC
* * *
2314367 TTTTAAGTCCACAACTCTATTGCACCC
1 TTTTAAGTCCACAACTCTATGGCATCT
* *
2314394 TTTTAAGTCCACAACACTATGGCACCT
1 TTTTAAGTCCACAACTCTATGGCATCT
* *** *
2314421 TTTTAAGTCCAAAACTCCGCGGCATTT
1 TTTTAAGTCCACAACTCTATGGCATCT
* ** * *
2314448 TTTTAAGTCCAAAACTCCGTAGCACCTTTT
1 TTTTAAGTCCACAACTCTATGGCA---TCT
* * * *
2314478 TCCTTTAAGTCCATAATTTTGTGGCATCT
1 T--TTTAAGTCCACAACTCTATGGCATCT
* * *
2314507 TTTTAAGCCCACAACTCTATGGCACCC
1 TTTTAAGTCCACAACTCTATGGCATCT
** *
2314534 TTCAAAGTCCACGACT-TAGTGGCATCT
1 TTTTAAGTCCACAACTCTA-TGGCATCT
2314561 CTTCTCTAAGTCCAC
1 -TT-T-TAAGTCCAC
2314576 GACTGAGTGC
Statistics
Matches: 140, Mismatches: 33, Indels: 15
0.74 0.18 0.08
Matches are distributed among these distances:
26 2 0.01
27 103 0.74
28 2 0.01
29 3 0.02
30 12 0.09
32 18 0.13
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCTATGGCATCT
Found at i:2314543 original size:793 final size:798
Alignment explanation
Indices: 2313564--2315117 Score: 2489
Period size: 814 Copynumber: 1.9 Consensus size: 798
2313554 CAACTCCATG
* * * * *
2313564 GCACCTTTTCCTTTAAGTCCACAATTTTTTGGCATCCTTTTAAGTCCAAAACTCTGTGGCACCTT
1 GCACCTTTTCCTTTAAGTCCACAATCTATTGGCACCCTTTTAAGTCCAAAACACTATGGCACCTT
* * *
2313629 TTTAAGTCCACAACTCCGCGACACTTTTTTAAGTCCAAAACTCCGTGGCACCTTTTTCTTTTAAG
66 TTTAAGTCCAAAACTCCGCGACACTTTTTTAAGTCCAAAACTCCGTAGCACCTTTTTCCTTTAAG
2313694 TCCATAATTTTGTGGCATCCTTTTAAGCCCACAACTCCATAGCACCCTTCAAAGTCCACGACTTA
131 TCCATAATTTTGTGGCATCCTTTTAAGCCCACAACTCCATAGCACCCTTCAAAGTCCACGACTTA
* *
2313759 GTGGCATCTCTTCTCTAAGTCCCCGACTTAGTGCCATCCTTTTTCTTCCAAGTCCACGACTCAGT
196 GTGGCATCTCTTCTCTAAGTCCACGACTGAGTGCCATCCTTTTTCTTCCAAGTCCACGACTCAGT
* *
2313824 GACATCCTTTTTCTTCCAAAAGTCCACGACTTAGTGGCATCC-T-T-T-ATGTCCACGACTCAAT
261 GACATCCTTTTTCTTCCAAAAGTCCACGACTTAGTAGCATCCTTGTCTCAAGTCCACGACTCAAT
*
2313885 AGCATCTCTTCTCTAATTCCACAACTCCAGGTCGCCATTTCCTTTTAAGTCCATAACTCCGAGGC
326 AGCATCTCTTCTCTAATTCCACAACTCCAGGGCGCCATTTCCTTTTAAGTCCATAACTCCGAGGC
*
2313950 ACCTTTTGCTTTTAAGTCCACAACTTTGT-G-G-CCATAACCCTATGGCACCTTTTTTAGTCCAC
391 ACCTTTTCCTTTTAAGTCCACAACTTTGTGGCGTCCATAACCCTATGGCACCTTTTTTAGTCCAC
2314012 AACTTCGTGGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAAC
456 AACTTCGTGGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAAC
* *
2314077 TCAATGGCACCATTTTTCTTTAAGTCCATAA-TTTCGTGGTATACTTTTAAGTCCATAACTCTGT
521 TCAATGGCACCATTTTTCTTTAAGTCCATAATTTTC-TAGCATACTTTTAAGTCCATAACTCTGT
* * * *
2314141 GGCAC-CTTTCAAAGTCCACGACTTTGTGGCATCTCTTCTCCAAGTTCACGACTTAGTGGCGTCT
585 GGCACAC-TTCAAAGTCCACAACTTTGTGGCATCTCTTCTCCAAATCCACGACTTAGTGGCATCT
* *
2314205 TTTTTCTTCCAAGTACATGACTTAGTGTTATCTCTTATCTAAGTCCACAACTTCGTACCACTTTT
649 TTTTTCTTCCAAGTACATGACTTAGTGTCATCTCTTATCTAAGTCCACAACTCCGTACCACTTTT
2314270 TCCTTGTAAGTTCACAACTCCGTGGCACCCTTTTTCTTTTTATGTCCACAACTCTATGGCACCCT
714 TCCTTGTAAGTTCACAACTCCGTGGCACCCTTTTTCTTTTTATGTCCACAACTCTATGGCACCCT
2314335 TTTAAATCCACAACTTTGCA
779 TTTAAATCCACAACTTTGCA
*
2314355 GCACCTTTTTCCTTTTAAGTCCACAACTCTATT-GCACCCTTTTAAGTCCACAACACTATGGCAC
1 GCACC-TTTTCC-TTTAAGTCCACAA-TCTATTGGCACCCTTTTAAGTCCAAAACACTATGGCAC
* *
2314419 CTTTTTAAGTCCAAAACTCCGCGGCATTTTTTTAAGTCCAAAACTCCGTAGCACCTTTTTCCTTT
63 CTTTTTAAGTCCAAAACTCCGCGACACTTTTTTAAGTCCAAAACTCCGTAGCACCTTTTTCCTTT
* * *
2314484 AAGTCCATAATTTTGTGGCATCTTTTTAAGCCCACAACTCTATGGCACCCTTCAAAGTCCACGAC
128 AAGTCCATAATTTTGTGGCATCCTTTTAAGCCCACAACTCCATAGCACCCTTCAAAGTCCACGAC
2314549 TTAGTGGCATCTCTTCTCTAAGTCCACGACTGAGTGCCATCCTTTTTCTTCCAAGTCCACGACTC
193 TTAGTGGCATCTCTTCTCTAAGTCCACGACTGAGTGCCATCCTTTTTCTTCCAAGTCCACGACTC
* * *
2314614 AGTGGCATCTTTTTTCTTCCAAAAGTCCACGACTTAGTAGCATCCTTTGTCTCCCAAAGTCCATG
258 AGTGACATCCTTTTTCTTCCAAAAGTCCACGACTTAGTAGCATCC-TTGTCT--C-AAGTCCACG
* *
2314679 ACTCAGTAGCATCTCTTCTCTAATTCCACAACTCCAGGGCGCCATTTTCTTTTAAGTCCATAACT
319 ACTCAATAGCATCTCTTCTCTAATTCCACAACTCCAGGGCGCCATTTCCTTTTAAGTCCATAACT
*
2314744 CCGGGGCACCTTTTCCTTTTAAGTCCACAACTTTGTGGCACCCTTTTAAGTCCATAACCCTATGG
384 CCGAGGCACCTTTTCCTTTTAAGTCCACAACTTTGTGG----C------GTCCATAACCCTATGG
*
2314809 CACCTTTTTTAGTCCACAACTTCGTGGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGGCAC
439 CACCTTTTTTAGTCCACAACTTCGTGGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACAC
* * *
2314874 CTTTTTAAGTCCACAACTCCATGGCACCATTTTTCTTTAAGTCCATAATTTTCTAGCATCCTTTT
504 CCTTTTAAGTCCACAACTCAATGGCACCATTTTTCTTTAAGTCCATAATTTTCTAGCATACTTTT
*
2314939 AAGTCTATAACTCTGTGGCACACTTCAAAGTCCACAACTTTGTGGCATCTCTTCTCCAAATCCAC
569 AAGTCCATAACTCTGTGGCACACTTCAAAGTCCACAACTTTGTGGCATCTCTTCTCCAAATCCAC
2315004 GACTTAGTGGCATCTTTTTTCTTCCAAGTACATGACTTAGTGTCATCTCTTATCTAAGTCCACAA
634 GACTTAGTGGCATCTTTTTTCTTCCAAGTACATGACTTAGTGTCATCTCTTATCTAAGTCCACAA
** *
2315069 CTCCGTGGCACTTTTTCCTTGTAAGTTCACAACTCTGTGGCACCCTTTT
699 CTCCGTACCACTTTTTCCTTGTAAGTTCACAACTCCGTGGCACCCTTTT
2315118 AAATCCACAA
Statistics
Matches: 695, Mismatches: 42, Indels: 29
0.91 0.05 0.04
Matches are distributed among these distances:
791 5 0.01
792 6 0.01
793 267 0.38
794 4 0.01
795 1 0.00
796 1 0.00
797 1 0.00
801 103 0.15
802 1 0.00
813 1 0.00
814 300 0.43
815 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.35
Consensus pattern (798 bp):
GCACCTTTTCCTTTAAGTCCACAATCTATTGGCACCCTTTTAAGTCCAAAACACTATGGCACCTT
TTTAAGTCCAAAACTCCGCGACACTTTTTTAAGTCCAAAACTCCGTAGCACCTTTTTCCTTTAAG
TCCATAATTTTGTGGCATCCTTTTAAGCCCACAACTCCATAGCACCCTTCAAAGTCCACGACTTA
GTGGCATCTCTTCTCTAAGTCCACGACTGAGTGCCATCCTTTTTCTTCCAAGTCCACGACTCAGT
GACATCCTTTTTCTTCCAAAAGTCCACGACTTAGTAGCATCCTTGTCTCAAGTCCACGACTCAAT
AGCATCTCTTCTCTAATTCCACAACTCCAGGGCGCCATTTCCTTTTAAGTCCATAACTCCGAGGC
ACCTTTTCCTTTTAAGTCCACAACTTTGTGGCGTCCATAACCCTATGGCACCTTTTTTAGTCCAC
AACTTCGTGGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAAC
TCAATGGCACCATTTTTCTTTAAGTCCATAATTTTCTAGCATACTTTTAAGTCCATAACTCTGTG
GCACACTTCAAAGTCCACAACTTTGTGGCATCTCTTCTCCAAATCCACGACTTAGTGGCATCTTT
TTTCTTCCAAGTACATGACTTAGTGTCATCTCTTATCTAAGTCCACAACTCCGTACCACTTTTTC
CTTGTAAGTTCACAACTCCGTGGCACCCTTTTTCTTTTTATGTCCACAACTCTATGGCACCCTTT
TAAATCCACAACTTTGCA
Found at i:2314609 original size:33 final size:33
Alignment explanation
Indices: 2314533--2314691 Score: 153
Period size: 33 Copynumber: 4.8 Consensus size: 33
2314523 CTATGGCACC
* *
2314533 CTTCAAAGTCCACGACTTAGTGGCAT-C-TCTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* * *
2314564 C-TCTAAGTCCACGACTGAGTGCCATCCTTTTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* *
2314596 CTTCCAAGTCCACGACTCAGTGGCATCTTTTTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* *
2314629 CTTCCAAAAGTCCACGACTTAGTAGCATCCTTTGT
1 CTTCC--AAGTCCACGACTTAGTGGCATCCTTTTT
* * * *
2314664 CTCCCAAAGTCCATGACTCAGTAGCATC
1 CTTCC-AAGTCCACGACTTAGTGGCATC
2314692 TCTTCTCTAA
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
30 21 0.19
31 2 0.02
32 4 0.04
33 32 0.30
34 21 0.19
35 28 0.26
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (33 bp):
CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
Found at i:2314763 original size:32 final size:32
Alignment explanation
Indices: 2314703--2314918 Score: 121
Period size: 27 Copynumber: 7.1 Consensus size: 32
2314693 CTTCTCTAAT
*
2314703 TCCACAACTCCAGGGCGCCATTTTCTTTTAAG
1 TCCACAACTCCAGGGCACCATTTTCTTTTAAG
* *
2314735 TCCATAACTCCGGGGCACC-TTTTCCTTTTAAG
1 TCCACAACTCCAGGGCACCATTTT-CTTTTAAG
**
2314767 TCCACAACT-TTGTGGCACC-----CTTTTAAG
1 TCCACAACTCCAG-GGCACCATTTTCTTTTAAG
* *
2314794 TCCATAAC-CCTATGGCACC---TT-TTTT-AG
1 TCCACAACTCC-AGGGCACCATTTTCTTTTAAG
* *
2314821 TCCACAACTTC-GTGGCACCTTTTTTCCATTTTAAG
1 TCCACAACTCCAG-GGCACC-ATTTT-C-TTTTAAG
*
2314856 TCCACAACTCCACGGCACC----T-TTTTAAG
1 TCCACAACTCCAGGGCACCATTTTCTTTTAAG
*
2314883 TCCACAACTCCATGGCACCATTTT-TCTTTAAG
1 TCCACAACTCCAGGGCACCATTTTCT-TTTAAG
2314915 TCCA
1 TCCA
2314919 TAATTTTCTA
Statistics
Matches: 146, Mismatches: 16, Indels: 44
0.71 0.08 0.21
Matches are distributed among these distances:
27 61 0.42
28 5 0.03
30 1 0.01
31 9 0.06
32 48 0.33
34 4 0.03
35 18 0.12
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.34
Consensus pattern (32 bp):
TCCACAACTCCAGGGCACCATTTTCTTTTAAG
Found at i:2314811 original size:59 final size:54
Alignment explanation
Indices: 2314727--2314906 Score: 146
Period size: 62 Copynumber: 3.1 Consensus size: 54
2314717 GCGCCATTTT
* *
2314727 CTTTTAAGTCCATAACTCCGGGGCACCTTTTCCTTTTAAGTCCACAACTTTGTGGCACC
1 CTTTTAAGTCCATAACTCCAGGGCACC--TT--TTTT-AGTCCACAACTTCGTGGCACC
*
2314786 CTTTTAAGTCCATAAC-CCTATGGCACCTTTTTTAGTCCACAACTTCGTGGCACCTTTTTTC
1 CTTTTAAGTCCATAACTCC-AGGGCACCTTTTTTAGTCCACAACTTCGTGGCA-C------C
* * * * *
2314847 CATTTTAAGTCCACAACTCCACGGCACCTTTTTAAGTCCACAACTCCATGGCACC
1 C-TTTTAAGTCCATAACTCCAGGGCACCTTTTTTAGTCCACAACTTCGTGGCACC
*
2314902 ATTTT
1 CTTTT
2314907 TCTTTAAGTC
Statistics
Matches: 102, Mismatches: 9, Indels: 25
0.75 0.07 0.18
Matches are distributed among these distances:
54 22 0.22
55 6 0.06
57 2 0.02
58 2 0.02
59 22 0.22
61 3 0.03
62 43 0.42
63 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.34
Consensus pattern (54 bp):
CTTTTAAGTCCATAACTCCAGGGCACCTTTTTTAGTCCACAACTTCGTGGCACC
Found at i:2314873 original size:62 final size:62
Alignment explanation
Indices: 2314787--2314908 Score: 174
Period size: 62 Copynumber: 2.0 Consensus size: 62
2314777 TGTGGCACCC
* * * * * *
2314787 TTTTAAGTCCATAACCCTATGGCACCTTTTTTAGTCCACAACTTCGTGGCACCTTTTTTCCA
1 TTTTAAGTCCACAACCCTACGGCACCTTTTTAAGTCCACAACTCCATGGCACCATTTTTCCA
2314849 TTTTAAGTCCACAACTCC-ACGGCACCTTTTTAAGTCCACAACTCCATGGCACCATTTTTC
1 TTTTAAGTCCACAAC-CCTACGGCACCTTTTTAAGTCCACAACTCCATGGCACCATTTTTC
2314909 TTTAAGTCCA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 51 0.96
63 2 0.04
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.35
Consensus pattern (62 bp):
TTTTAAGTCCACAACCCTACGGCACCTTTTTAAGTCCACAACTCCATGGCACCATTTTTCCA
Found at i:2314881 original size:89 final size:86
Alignment explanation
Indices: 2314728--2314907 Score: 218
Period size: 89 Copynumber: 2.1 Consensus size: 86
2314718 CGCCATTTTC
* * ****
2314728 TTTTAAGTCCATAACTCCGGGGCACCTTTTCCTTTTAAGTCCACAACTTTGTGGCACCCTTTTAA
1 TTTTTAGTCCACAACTCCGGGGCACCTTTTCCTTTTAAGTCCACAACTCCACGGCACCCTTTTAA
* *
2314793 GTCCATAAC-CCTATGGCACCT
66 GTCCACAACTCC-ATGGCACCA
* * *
2314814 TTTTTAGTCCACAACTTCGTGGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGGCACCTTTT
1 TTTTTAGTCCACAACTCCGGGGCACC--TTTTCC-TTTTAAGTCCACAACTCCACGGCACCCTTT
2314879 TAAGTCCACAACTCCATGGCACCA
63 TAAGTCCACAACTCCATGGCACCA
2314903 TTTTT
1 TTTTT
2314908 CTTTAAGTCC
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
86 22 0.28
88 6 0.08
89 49 0.62
90 2 0.03
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (86 bp):
TTTTTAGTCCACAACTCCGGGGCACCTTTTCCTTTTAAGTCCACAACTCCACGGCACCCTTTTAA
GTCCACAACTCCATGGCACCA
Found at i:2315014 original size:30 final size:31
Alignment explanation
Indices: 2314964--2315054 Score: 85
Period size: 33 Copynumber: 2.9 Consensus size: 31
2314954 TGGCACACTT
* *
2314964 CAAAGTCCACAACTTTGTGGCATCTCTTC-TC
1 CAAA-TCCACGACTTAGTGGCATCTCTTCTTC
*
2314995 CAAATCCACGACTTAGTGGCATCTTTTTTCTTC
1 CAAATCCACGACTTAGTGGCATC--TCTTCTTC
* * * *
2315028 CAAGTACATGACTTAGTGTCATCTCTT
1 CAAATCCACGACTTAGTGGCATCTCTT
2315055 ATCTAAGTCC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
30 17 0.35
31 7 0.14
32 4 0.08
33 21 0.43
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.36
Consensus pattern (31 bp):
CAAATCCACGACTTAGTGGCATCTCTTCTTC
Found at i:2315129 original size:59 final size:59
Alignment explanation
Indices: 2314785--2315253 Score: 276
Period size: 59 Copynumber: 7.8 Consensus size: 59
2314775 TTTGTGGCAC
* * * * *
2314785 CCTTTTAAGTCCATAACCCTATGGCACCTTTTTTAGTCCACAACT-TCGTGGCACCTTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCT-ATGGCA-C-TTTTT
*** *
2314846 CCATTTTAAGTCCACAACTCCACGGCACCTTTTTAAGTCCACAACTCCATGGCACCATTTTT
1 CC-TTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTATGGCA-C-TTTTT
* * * * * * * *
2314908 -C-TTTAAGTCCATAATTTTCTAGCATCC-TTTTAAGTCTATAACTCTGTGGCAC-----
1 CCTTTTAAGTCCACAACTCTGTGGCA-CCTTTTTAAGTCCACAACTCTATGGCACTTTTT
* ** * ** * *
2314960 ACTTCAAAGTCCACAACTTTGTGGCATCTCTTCTCCAAATCCACGACT-TAGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCA-C-CTT-TTTAAGTCCACAACTCTA-TGGCA-CTTTTT
* ** * ** * * **
2315023 TCTTCCAAGTACATGACT-TAGTGTCATCTCTTATCTAAGTCCACAACTCCGTGGCACTTTTT
1 CCTTTTAAGTCCACAACTCT-GTGGCA-C-CTT-TTTAAGTCCACAACTCTATGGCACTTTTT
* * * * **
2315085 CCTTGTAAGTTCACAACTCTGTGGCACCCTTTTAAATCCACAACTCTACAGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTATGGCA-CTTTTT
* * *
2315145 CCCTTTTAAGTCCACAACTTTGTGGTACCTTTTTAAGTCCACAACTCTATGGCACCTTTT
1 -CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTATGGCACTTTTT
* * *
2315205 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTTAAGTCCACAAGTCTAT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTAT
2315254 AGAACCCTTC
Statistics
Matches: 316, Mismatches: 72, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
53 1 0.00
54 19 0.06
55 1 0.00
56 2 0.01
57 14 0.04
58 2 0.01
59 97 0.31
60 15 0.05
61 49 0.16
62 74 0.23
63 42 0.13
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (59 bp):
CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTATGGCACTTTTT
Found at i:2315161 original size:61 final size:60
Alignment explanation
Indices: 2315079--2315252 Score: 233
Period size: 61 Copynumber: 2.9 Consensus size: 60
2315069 CTCCGTGGCA
* * * *
2315079 CTTTTTCCTTGTAAGTTCACAACTCTGTGGCACCCTTTTAAATCCACAACTCTACAGCAC
1 CTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTACAGCAC
* * **
2315139 CTTTTTCCCTTTTAAGTCCACAACTTTGTGGTACCTTTTTAAGTCCACAACTCTATGGCAC
1 CTTTTT-CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTACAGCAC
* * *
2315200 C-TTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTAAGTCCACAAGTCTA
1 CTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTA
2315253 TAGAACCCTT
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
59 43 0.43
60 10 0.10
61 47 0.47
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (60 bp):
CTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTACAGCAC
Found at i:2315183 original size:27 final size:27
Alignment explanation
Indices: 2315148--2315247 Score: 110
Period size: 27 Copynumber: 3.5 Consensus size: 27
2315138 CCTTTTTCCC
* *
2315148 TTTTAAGTCCACAACTTTGTGGTACCT
1 TTTTAAGTCCACAACTCTGTGGCACCT
*
2315175 TTTTAAGTCCACAACTCTATGGCACCTTTT
1 TTTTAAGTCCACAACTCTGTGGCACC---T
* *
2315205 CCTTTTAAGTCCACAACTCCGTGGCATCT
1 --TTTTAAGTCCACAACTCTGTGGCACCT
2315234 TTTTAAGTCCACAA
1 TTTTAAGTCCACAA
2315248 GTCTATAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
27 37 0.60
29 1 0.02
30 1 0.02
32 23 0.37
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCTGTGGCACCT
Found at i:2315342 original size:34 final size:32
Alignment explanation
Indices: 2315295--2315388 Score: 98
Period size: 34 Copynumber: 2.8 Consensus size: 32
2315285 TATCTTCTCC
** *
2315295 AAGTCCATGACTTAGTGGCATTTTTTTCTTCCAA
1 AAGTCCACAACTTAGTAGCATTTTTTTC--CCAA
* *
2315329 AAGTCTACAACTTAGTAGCATCCTTTTTTCCCCA
1 AAGTCCACAACTTAGTAGCAT--TTTTTTCCCAA
*
2315363 AAGTCCACAACTTAGTAGCATCTTTT
1 AAGTCCACAACTTAGTAGCATTTTTT
2315389 CTCTAAATCC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
32 4 0.08
34 40 0.78
36 7 0.14
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (32 bp):
AAGTCCACAACTTAGTAGCATTTTTTTCCCAA
Found at i:2315523 original size:27 final size:26
Alignment explanation
Indices: 2315485--2315540 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
2315475 ACCTTTTCCC
* *
2315485 TTTAAGTCCACAACTCTGTGGTACCTT
1 TTTAAGTCCAC-ACTCAGTGGCACCTT
*
2315512 TTTAAGTTCACACTCAGTGGCACCTT
1 TTTAAGTCCACACTCAGTGGCACCTT
2315538 TTT
1 TTT
2315541 TCCCTTTTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (26 bp):
TTTAAGTCCACACTCAGTGGCACCTT
Found at i:2315577 original size:61 final size:61
Alignment explanation
Indices: 2315454--2315894 Score: 232
Period size: 61 Copynumber: 7.4 Consensus size: 61
2315444 ACTTTCTCTT
* * * * *
2315454 TTTAAGCCCACAACTC-TTAGCACC--TTTTCCCTTTAAGTCCACAACTCTGTGGTACCTT
1 TTTAAGTCCACAACTCAGTGGCACCTTTTTTCCCTTTAAGTCCACAACTCTGTGGCACCTA
* * *
2315512 TTTAAGTTCAC-ACTCAGTGGCACCTTTTTTCCCTTTTACGTCCATAACTCTGTGGCACCTA
1 TTTAAGTCCACAACTCAGTGGCACCTTTTTTCCC-TTTAAGTCCACAACTCTGTGGCACCTA
* * *
2315573 TTTAAGTCCACAACTCCGTGGCACCTTTTTT---TTTAAGTGCACAA-TTTCGT-GCAATCCT-
1 TTTAAGTCCACAACTCAGTGGCACCTTTTTTCCCTTTAAGTCCACAACTCT-GTGGC-A-CCTA
* * * *
2315631 TTTAAGTCCACAACTCCGTGGCA--------CCCTTTAAAGTCCACCACTCAGTCGCATCTCT-
1 TTTAAGTCCACAACTCAGTGGCACCTTTTTTCCCTTT-AAGTCCACAACTCTGTGGCA-C-CTA
* * * ** *
2315686 TCTCTAAGTCCACGACTTAGTGGCATAC-TTTTTCCCTTTTAAGTCCACAACTCCATGGCAACT-
1 T-T-TAAGTCCACAACTCAGTGGCA-CCTTTTTTCCC-TTTAAGTCCACAACTCTGTGGCACCTA
* * * * * *
2315749 TCTTTAGTCCACAACTCTA-TAGCA-CATTTTTCCCTTTTAAGTCCACAACTCCGTGCCACCTT
1 T-TTAAGTCCACAACTC-AGTGGCACCTTTTTTCCC-TTTAAGTCCACAACTCTGTGGCACCTA
** * ** * *
2315811 TTTAAGTCCACAACTTTGTGGCACC-TTTTT-CATTTAAGTTTACAACTCCGTGGGATCCT-
1 TTTAAGTCCACAACTCAGTGGCACCTTTTTTCCCTTTAAGTCCACAACTCTGTGGCA-CCTA
* * *
2315870 TTTAAGTCCATAACTCTGTGACACC
1 TTTAAGTCCACAACTCAGTGGCACC
2315895 CTTCAAAGTC
Statistics
Matches: 306, Mismatches: 45, Indels: 63
0.74 0.11 0.15
Matches are distributed among these distances:
53 3 0.01
54 13 0.04
55 6 0.02
56 1 0.00
57 26 0.08
58 51 0.17
59 44 0.14
60 12 0.04
61 87 0.28
62 35 0.11
63 6 0.02
65 19 0.06
66 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (61 bp):
TTTAAGTCCACAACTCAGTGGCACCTTTTTTCCCTTTAAGTCCACAACTCTGTGGCACCTA
Found at i:2315616 original size:31 final size:31
Alignment explanation
Indices: 2315411--2316143 Score: 157
Period size: 27 Copynumber: 24.3 Consensus size: 31
2315401 AACACTGCGA
*
2315411 CACCTTTTTCTTTTAAGTCCCCAACTCCGTGG
1 CACCTTTTT-TTTTAAGTCCACAACTCCGTGG
* * *
2315443 CA-CTTTCTCTTTTTAAGCCCACAACT-CTTAG
1 CACCTTT-T-TTTTTAAGTCCACAACTCCGTGG
** *
2315474 CACCTTTTCCCTTTAAGTCCACAACTCTGTGG
1 CACCTTTT-TTTTTAAGTCCACAACTCCGTGG
* * *
2315506 TACC----TTTTTAAGTTCAC-ACTCAGTGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* * *
2315532 CACCTTTTTTCCCTTTTACGTCCATAACTCTGTGG
1 CACC-TTTTT---TTTTAAGTCCACAACTCCGTGG
*
2315567 CACC----TATTTAAGTCCACAACTCCGTGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* * *
2315594 CACCTTTTTTTTTAAGTGCACAATTTCGT-G
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* **
2315624 CA---ATCCTTTTAAGTCCACAACTCCGTGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* * * * *
2315652 CACC----CTTTAAAGTCCACCACTCAGTCG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* * * * * **
2315679 CATC-TCTTCTCTAAGTCCACGACTTAGTGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* *
2315709 CATACTTTTTCCCTTTTAAGTCCACAACTCCATGG
1 CA-CCTTTTT---TTTTAAGTCCACAACTCCGTGG
* * ** *
2315744 CAAC---TTCTTT-AGTCCACAACTCTATAG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* *
2315771 CACATTTTTCCCTTTTAAGTCCACAACTCCGTGC
1 CACCTTTTT---TTTTAAGTCCACAACTCCGTGG
**
2315805 CACC----TTTTTAAGTCCACAACTTTGTGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* **
2315832 CACCTTTTTCATTTAAGTTTACAACTCCGTGG
1 CACCTTTTT-TTTTAAGTCCACAACTCCGTGG
* * * *
2315864 GATCC-----TTTTAAGTCCATAACTCTGTGA
1 CA-CCTTTTTTTTTAAGTCCACAACTCCGTGG
* ** ** **
2315891 CACC----CTTCAAAGTCCATTACTTAGTGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* * * * * ** *
2315918 CATC-TCTTCTCTAAGTCCACGACTTAGAGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* * ** ** **
2315948 TATCCTTTTGCTTCCAAGTCCATGACTTAGTGG
1 CA-CCTTTT-TTTTTAAGTCCACAACTCCGTGG
* * * * *
2315981 CATC-TCTTATCTAAGTCCACAACTTCGTGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
* * *
2316011 CACCTTTTCCTTTTAAGTCCATAACTCCATGG
1 CACCTTTT-TTTTTAAGTCCACAACTCCGTGG
*
2316043 CACCTTTTCCTTTTAAGTCCACAACTCCGTGG
1 CACCTTTT-TTTTTAAGTCCACAACTCCGTGG
* ** **
2316075 CA-C---ATTTTTAAGTTTACAACTCTATGG
1 CACCTTTTTTTTTAAGTCCACAACTCCGTGG
*
2316102 CACCTTTTTCCCTATTAAGTCCACAACTCCGTGG
1 CACCTTTTT---TTTTAAGTCCACAACTCCGTGG
2316136 CACCTTTT
1 CACCTTTT
2316144 GAAGCCTACA
Statistics
Matches: 511, Mismatches: 133, Indels: 112
0.68 0.18 0.15
Matches are distributed among these distances:
26 13 0.03
27 168 0.33
28 7 0.01
30 63 0.12
31 54 0.11
32 99 0.19
33 25 0.05
34 52 0.10
35 30 0.06
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.36
Consensus pattern (31 bp):
CACCTTTTTTTTTAAGTCCACAACTCCGTGG
Found at i:2315710 original size:177 final size:177
Alignment explanation
Indices: 2315514--2315835 Score: 391
Period size: 177 Copynumber: 1.8 Consensus size: 177
2315504 GGTACCTTTT
* * * * ** *
2315514 TAAGTTCACACTCAGTGGCA-CCTTTTTTCCCTTTTACGTCCATAACTCTGTGGCACCTAT-TTA
1 TAAGTCCACACTCAGTGGCATAC-TTTTTCCCTTTTAAGTCCACAACTCCATGGCAACT-TCTTA
* * * * * *
2315577 AGTCCACAACTCCGTGGCACCTTTTT-TTTTAAGTGCACAATTTCGTGCAATCC-TTTTAAGTCC
64 AGTCCACAACTCCATAGCACATTTTTCTTTTAAGTCCACAACTCCGTGCAA-CCTTTTTAAGTCC
2315640 ACAACTCCGTGGCACCCTTTAAAGTCCACCACTCAGTCGCATCTCTTCTC
128 ACAACTCCGTGGCACCCTTTAAAGTCCACCACTCAGTCGCATCTCTTCTC
* *
2315690 TAAGTCCACGACTTAGTGGCATACTTTTTCCCTTTTAAGTCCACAACTCCATGGCAACTTCTTTA
1 TAAGTCCAC-ACTCAGTGGCATACTTTTTCCCTTTTAAGTCCACAACTCCATGGCAACTTCTTAA
* *
2315755 GTCCACAACTCTATAGCACATTTTTCCCTTTTAAGTCCACAACTCCGTGCCACCTTTTTAAGTCC
65 GTCCACAACTCCATAGCACATTTTT--CTTTTAAGTCCACAACTCCGTGCAACCTTTTTAAGTCC
**
2315820 ACAACTTTGTGGCACC
128 ACAACTCCGTGGCACC
2315836 TTTTTCATTT
Statistics
Matches: 120, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
176 9 0.08
177 64 0.53
178 1 0.01
179 2 0.02
180 44 0.37
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (177 bp):
TAAGTCCACACTCAGTGGCATACTTTTTCCCTTTTAAGTCCACAACTCCATGGCAACTTCTTAAG
TCCACAACTCCATAGCACATTTTTCTTTTAAGTCCACAACTCCGTGCAACCTTTTTAAGTCCACA
ACTCCGTGGCACCCTTTAAAGTCCACCACTCAGTCGCATCTCTTCTC
Found at i:2315934 original size:30 final size:30
Alignment explanation
Indices: 2315900--2315999 Score: 110
Period size: 30 Copynumber: 3.2 Consensus size: 30
2315890 ACACCCTTCA
*
2315900 AAGTCCATTACTTAGTGGCATCTCTTCTCT
1 AAGTCCATGACTTAGTGGCATCTCTTCTCT
* * * * *
2315930 AAGTCCACGACTTAGAGGTATCCTTTTGCTTCC
1 AAGTCCATGACTTAGTGGCAT-CTCTT-C-TCT
*
2315963 AAGTCCATGACTTAGTGGCATCTCTTATCT
1 AAGTCCATGACTTAGTGGCATCTCTTCTCT
2315993 AAGTCCA
1 AAGTCCA
2316000 CAACTTCGTG
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
30 26 0.47
31 4 0.07
32 5 0.09
33 20 0.36
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (30 bp):
AAGTCCATGACTTAGTGGCATCTCTTCTCT
Found at i:2315936 original size:239 final size:237
Alignment explanation
Indices: 2315478--2315944 Score: 607
Period size: 239 Copynumber: 2.0 Consensus size: 237
2315468 TCTTAGCACC
** * * * * *
2315478 TTTTCCCTTTAAGTCCACAACTCTGTGGTACCTTTTTAAGTTCACACTCAGTGGCACCTTTTTTC
1 TTTTCCCTTTAAGTCCACAACTCCATGGCAACTTTTTAAGTCCACACTCAGTAGCACCATTTTTC
* * * * *
2315543 CCTTTTACGTCCATAACTCTGTGGCACCTATTTAAGTCCACAACTCCGTGGCACCTTTTTTTTTA
66 CCTTTTAAGTCCACAACTCCGTGCCACCTATTTAAGTCCACAACTCCGTGGCACCTTTTTATTTA
* * * *
2315608 AGTGCACAATTTCGTGCAATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGTCCACCACT
131 AGTGCACAACTCCGTGCAATCCTTTTAAGTCCACAACTCCGTGACACCCTTCAAAGTCCACCACT
2315673 CAGTCGCATCTCTTCTCTAAGTCCACGACTTAGTGGCATACT
196 CAGTCGCATCTCTTCTCTAAGTCCACGACTTAGTGGCATACT
2315715 TTTTCCCTTTTAAGTCCACAACTCCATGGCAACTTCTTT-AGTCCACAACTCTA-TAGCA-CATT
1 TTTTCCC-TTTAAGTCCACAACTCCATGGCAACTT-TTTAAGTCCAC-ACTC-AGTAGCACCATT
* **
2315777 TTTCCCTTTTAAGTCCACAACTCCGTGCCACCTTTTTAAGTCCACAACTTTGTGGCACCTTTTTC
62 TTTCCCTTTTAAGTCCACAACTCCGTGCCACCTATTTAAGTCCACAACTCCGTGGCACCTTTTT-
** ** * *
2315842 ATTTAAGTTTACAACTCCGTGGGATCCTTTTAAGTCCATAACTCTGTGACACCCTTCAAAGTCCA
126 ATTTAAGTGCACAACTCCGTGCAATCCTTTTAAGTCCACAACTCCGTGACACCCTTCAAAGTCCA
** * *
2315907 TTACTTAGTGGCATCTCTTCTCTAAGTCCACGACTTAG
191 CCACTCAGTCGCATCTCTTCTCTAAGTCCACGACTTAG
2315945 AGGTATCCTT
Statistics
Matches: 196, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
237 7 0.04
238 89 0.45
239 99 0.51
240 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (237 bp):
TTTTCCCTTTAAGTCCACAACTCCATGGCAACTTTTTAAGTCCACACTCAGTAGCACCATTTTTC
CCTTTTAAGTCCACAACTCCGTGCCACCTATTTAAGTCCACAACTCCGTGGCACCTTTTTATTTA
AGTGCACAACTCCGTGCAATCCTTTTAAGTCCACAACTCCGTGACACCCTTCAAAGTCCACCACT
CAGTCGCATCTCTTCTCTAAGTCCACGACTTAGTGGCATACT
Found at i:2316011 original size:30 final size:30
Alignment explanation
Indices: 2315900--2316012 Score: 102
Period size: 30 Copynumber: 3.7 Consensus size: 30
2315890 ACACCCTTCA
** *
2315900 AAGTCCATTACTTAGTGGCATCTCTTCTCT
1 AAGTCCACGACTTAGTGGCATCTCTTATCT
* * *
2315930 AAGTCCACGACTTAGAGGTATC-CTTTTGCTT
1 AAGTCCACGACTTAGTGGCATCTCTTAT-C-T
*
2315961 CCAAGTCCATGACTTAGTGGCATCTCTTATCT
1 --AAGTCCACGACTTAGTGGCATCTCTTATCT
* *
2315993 AAGTCCACAACTTCGTGGCA
1 AAGTCCACGACTTAGTGGCA
2316013 CCTTTTCCTT
Statistics
Matches: 66, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
29 4 0.06
30 36 0.55
31 1 0.02
32 1 0.02
33 20 0.30
34 4 0.06
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.34
Consensus pattern (30 bp):
AAGTCCACGACTTAGTGGCATCTCTTATCT
Found at i:2316029 original size:32 final size:32
Alignment explanation
Indices: 2315992--2316609 Score: 187
Period size: 32 Copynumber: 20.0 Consensus size: 32
2315982 ATCTCTTATC
2315992 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
* * *
2316024 TAAGTCCATAACTCCATGGCACCTTTTCCTTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
* *
2316056 TAAGTCCACAACTCCGTGGCA-C--AT--TTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
** * *
2316083 TAAGTTTACAAC-TCTATGGCACCTTTTTCCCTAT
1 TAAGTCCACAACTTC-GTGGCACC-TTTT-CCTTT
*
2316117 TAAGTCCACAACTCCGTGGCACC---T--TTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
* *
2316144 GAAG-CCTACAAC-TCTGTGACACCTTTTTCCCTTT
1 TAAGTCC-ACAACTTC-GTGGCACC-TTTT-CCTTT
*
2316178 TAACTCCACAAC-TCTGTGGCA-C----CCTTT
1 TAAGTCCACAACTTC-GTGGCACCTTTTCCTTT
** * *
2316205 TAAGTTTACAAC-TCTATGGCA-----TCCTAT
1 TAAGTCCACAACTTC-GTGGCACCTTTTCCTTT
* *
2316232 TAAGTCCAAAACTTCGTGGCACC--CTCC---
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
* * * * *
2316259 AAAGTCCACAAC-TCAGTAGCATCTCTT-C-TC
1 TAAGTCCACAACTTC-GTGGCACCTTTTCCTTT
* * * * *
2316289 CAAGTCCACGACTTAGCGGCATCTTTT--TTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
* *
2316319 CTCCAAAAGTCCACAACTTAGTGGCATCCTTCTT-CTCCT
1 -T----AAGTCCACAACTTCGTGGCA-CCTT-TTCCT-TT
* * ** * * *
2316358 AAAGTCCATAACTTAATGGCATCTCTT-C-TC
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
* * * * **
2316388 TAAGTCCATAACTCCATAGCACCTTTTCCACT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
*
2316420 TAAGTCTACAACTTCGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
* * *
2316452 TAAGTCTACAACTCCGTGGCACCCTTT-CTATT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCT-TT
* * *
2316484 TAAGTCTACAACTCCGTAGCACC---T--TTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
2316511 TAAGTCCACAAC-TCTGTGGCACCTTTATCCCTTT
1 TAAGTCCACAACTTC-GTGGCACCTTT-T-CCTTT
*
2316545 TAAGTCCACAAC-TCTGTGGCACATTTTTCCCTTT
1 TAAGTCCACAACTTC-GTGGCAC-CTTTT-CCTTT
* *
2316579 T-AGTCCACAACTTTGTGACACCTTATTCCTT
1 TAAGTCCACAACTTCGTGGCACCTT-TTCCTT
2316610 CAATTCCATA
Statistics
Matches: 451, Mismatches: 81, Indels: 108
0.70 0.13 0.17
Matches are distributed among these distances:
26 7 0.02
27 111 0.25
28 5 0.01
29 3 0.01
30 45 0.10
31 8 0.02
32 131 0.29
33 21 0.05
34 89 0.20
35 24 0.05
36 3 0.01
37 2 0.00
38 1 0.00
39 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.34
Consensus pattern (32 bp):
TAAGTCCACAACTTCGTGGCACCTTTTCCTTT
Found at i:2316154 original size:61 final size:60
Alignment explanation
Indices: 2316019--2316225 Score: 265
Period size: 61 Copynumber: 3.4 Consensus size: 60
2316009 GGCACCTTTT
** * *
2316019 CCTTTTAAGTCCATAACTCCATGGCACC-TTTT-CCTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAGTTTACAACTCTATGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA
* *
2316077 CATTTTTAAGTTTACAACTCTATGGCACCTTTTTCCCTATTAAGTCCACAACTCCGTGGCA
1 C-CTTTTAAGTTTACAACTCTATGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA
** * * * *
2316138 CCTTTTGAAGCCTACAACTCTGTGACACCTTTTTCCCTTTTAACTCCACAACTCTGTGGCA
1 CCTTTT-AAGTTTACAACTCTATGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA
2316199 CCCTTTTAAGTTTACAACTCTATGGCA
1 -CCTTTTAAGTTTACAACTCTATGGCA
2316226 TCCTATTAAG
Statistics
Matches: 126, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
58 1 0.01
59 22 0.17
60 8 0.06
61 89 0.71
62 6 0.05
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (60 bp):
CCTTTTAAGTTTACAACTCTATGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA
Found at i:2316203 original size:27 final size:27
Alignment explanation
Indices: 2316172--2316272 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 27
2316162 ACACCTTTTT
*
2316172 CCCTTTTAACTCCACAACTCTGTGGCA
1 CCCTTTTAAGTCCACAACTCTGTGGCA
** *
2316199 CCCTTTTAAGTTTACAACTCTATGGCA
1 CCCTTTTAAGTCCACAACTCTGTGGCA
* * *
2316226 TCCTATTAAGTCCAAAACT-TCGTGGCA
1 CCCTTTTAAGTCCACAACTCT-GTGGCA
***
2316253 CCCTCCAAAGTCCACAACTC
1 CCCTTTTAAGTCCACAACTC
2316273 AGTAGCATCT
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.27, C:0.34, G:0.11, T:0.29
Consensus pattern (27 bp):
CCCTTTTAAGTCCACAACTCTGTGGCA
Found at i:2316295 original size:30 final size:32
Alignment explanation
Indices: 2316255--2316400 Score: 138
Period size: 30 Copynumber: 4.5 Consensus size: 32
2316245 TCGTGGCACC
* *
2316255 CTCCAAAGTCCACAACTCAGTAGCATC-TCTT
1 CTCCAAAGTCCACAACTTAGTGGCATCTTCTT
* * *
2316286 CTCC-AAGTCCACGACTTAGCGGCATCTTTTTTT
1 CTCCAAAGTCCACAACTTAGTGGCATC--TTCTT
2316319 CTCCAAAAGTCCACAACTTAGTGGCATCCTTCTT
1 CTCC-AAAGTCCACAACTTAGTGGCAT-CTTCTT
* *
2316353 CTCCTAAAGTCCATAACTTAATGGCATC-TCTT
1 CTCC-AAAGTCCACAACTTAGTGGCATCTTCTT
* *
2316385 CT-CTAAGTCCATAACT
1 CTCCAAAGTCCACAACT
2316401 CCATAGCACC
Statistics
Matches: 97, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
30 30 0.31
31 5 0.05
32 6 0.06
33 8 0.08
34 28 0.29
35 19 0.20
36 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32
Consensus pattern (32 bp):
CTCCAAAGTCCACAACTTAGTGGCATCTTCTT
Found at i:2316332 original size:35 final size:34
Alignment explanation
Indices: 2316255--2316386 Score: 112
Period size: 34 Copynumber: 4.0 Consensus size: 34
2316245 TCGTGGCACC
* **
2316255 CTCC-AAAGTCCACAACTCAGTAGCAT-C-TCTT
1 CTCCAAAAGTCCACAACTTAGCGGCATCCTTCTT
* * *
2316286 CTCC--AAGTCCACGACTTAGCGGCATCTTTTTTT
1 CTCCAAAAGTCCACAACTTAGCGGCATC-CTTCTT
*
2316319 CTCCAAAAGTCCACAACTTAGTGGCATCCTTCTT
1 CTCCAAAAGTCCACAACTTAGCGGCATCCTTCTT
* * **
2316353 CTCCTAAAGTCCATAACTTAATGGCATCTCTTCT
1 CTCCAAAAGTCCACAACTTAGCGGCATC-CTTCT
2316387 CTAAGTCCAT
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
30 17 0.21
31 4 0.05
33 7 0.09
34 29 0.35
35 25 0.30
ACGTcount: A:0.25, C:0.32, G:0.11, T:0.32
Consensus pattern (34 bp):
CTCCAAAAGTCCACAACTTAGCGGCATCCTTCTT
Found at i:2316380 original size:69 final size:64
Alignment explanation
Indices: 2316255--2316381 Score: 155
Period size: 65 Copynumber: 1.9 Consensus size: 64
2316245 TCGTGGCACC
* *
2316255 CTCCAAAGTCCACAACTCAGTAGCATCTCTTCTCCAAGTCCACGACTTAGCGGCATCTTTTTTT
1 CTCCAAAGTCCACAACTCAGTAGCATCTCTTCTCCAAGTCCACAACTTAACGGCATCTTTTTTT
* * * *
2316319 CTCCAAAAGTCCACAACTTAGTGGCATCCTTCTTCTCCTAAAGTCCATAACTTAATGGCATCT
1 CTCC-AAAGTCCACAACTCAGTAGCAT-C-TCTTCTCC--AAGTCCACAACTTAACGGCATCT
2316382 CTTCTCTAAG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
64 4 0.08
65 20 0.38
66 1 0.02
67 8 0.15
69 19 0.37
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (64 bp):
CTCCAAAGTCCACAACTCAGTAGCATCTCTTCTCCAAGTCCACAACTTAACGGCATCTTTTTTT
Found at i:2316549 original size:34 final size:34
Alignment explanation
Indices: 2316508--2316662 Score: 150
Period size: 34 Copynumber: 4.9 Consensus size: 34
2316498 CGTAGCACCT
2316508 TTTTAAGTCCACAACTCTGTGGCACCTTTATCCC
1 TTTTAAGTCCACAACTCTGTGGCACCTTTATCCC
* *
2316542 TTTTAAGTCCACAACTCTGTGGCACATTTTTCCC
1 TTTTAAGTCCACAACTCTGTGGCACCTTTATCCC
* * *
2316576 TTTT-AGTCCACAACTTTGTGACACC-TTATTCC
1 TTTTAAGTCCACAACTCTGTGGCACCTTTATCCC
* * *
2316608 -TTCAATTCCATAACTCTGTGG------TAT-CC
1 TTTTAAGTCCACAACTCTGTGGCACCTTTATCCC
* *
2316634 TTTTAAGTCTACAACTCCGTGGCACCTTT
1 TTTTAAGTCCACAACTCTGTGGCACCTTT
2316663 CAAAATTCAC
Statistics
Matches: 96, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
26 2 0.02
27 19 0.20
31 2 0.02
32 18 0.19
33 19 0.20
34 36 0.38
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (34 bp):
TTTTAAGTCCACAACTCTGTGGCACCTTTATCCC
Found at i:2316803 original size:35 final size:35
Alignment explanation
Indices: 2316670--2316803 Score: 130
Period size: 35 Copynumber: 3.9 Consensus size: 35
2316660 TTTCAAAATT
* ** *
2316670 CACGACTTATTGGCATCCTTTTACTTCCAAAAGTC
1 CACGACTTAGTGGCATCCTTTTTGTCCCAAAAGTC
* * *
2316705 CACGGCTTAGTGGCATCC-TTTT-TCTCACAAGTC
1 CACGACTTAGTGGCATCCTTTTTGTCCCAAAAGTC
* * *
2316738 CACAACTAAGTAGCATCCTCTTTTGT-CCAAAAGTC
1 CACGACTTAGTGGCATCCT-TTTTGTCCCAAAAGTC
* *
2316773 CATGACTTAGTGCCATCCTTTTTGTCCCAAA
1 CACGACTTAGTGGCATCCTTTTTGTCCCAAA
2316804 GTCAATGACT
Statistics
Matches: 78, Mismatches: 17, Indels: 8
0.76 0.17 0.08
Matches are distributed among these distances:
33 22 0.28
34 9 0.12
35 46 0.59
36 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (35 bp):
CACGACTTAGTGGCATCCTTTTTGTCCCAAAAGTC
Found at i:2316870 original size:32 final size:31
Alignment explanation
Indices: 2316834--2316944 Score: 97
Period size: 32 Copynumber: 3.6 Consensus size: 31
2316824 TCTTCTCTAG
*
2316834 GTCCAAAACTCTGTGGCACCTTTCCTATTTAA
1 GTCCAAAACTCGGTGGCACCTTTCCT-TTTAA
* * *
2316866 GTCCACATCTTCGGT-GCACCTTTTCCTTTTTA
1 GTCCAAAAC-TCGGTGGCACC-TTTCCTTTTAA
*
2316898 GTCCATAACTCGGTGGCACC--T--TTTTAA
1 GTCCAAAACTCGGTGGCACCTTTCCTTTTAA
* *
2316925 GTCCACAACTCCGTGGCACC
1 GTCCAAAACTCGGTGGCACC
2316945 ATTTTAAGTC
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
27 23 0.34
29 1 0.01
31 5 0.07
32 28 0.42
33 10 0.15
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.33
Consensus pattern (31 bp):
GTCCAAAACTCGGTGGCACCTTTCCTTTTAA
Found at i:2316887 original size:443 final size:427
Alignment explanation
Indices: 2315992--2316966 Score: 1081
Period size: 443 Copynumber: 2.3 Consensus size: 427
2315982 ATCTCTTATC
* *
2315992 TAAGTCCACAACTTCGTGGCACCTTTTCCTTTTAAGTCCATAACTCCATGGCACCTTTTCCTTTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTTT-CTTTT
* ** *
2316057 AAGTCCACAACTCCGTGGCACATTTTTAAGTTTACAACTCTATGGCACCTTTTTCCCTATTAAGT
65 AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTATCCCTATTAAGT
* *
2316122 CCACAACTCCGTGGCACCTTTTGAAGCCTACAACTCTGTGACACCTTTTTCCCTTTTAACTCCAC
130 CCACAACTCCGTGGCACCTTTTGAAGCCTACAACTCTGTGACACCTTATTCCCTTTCAACTCCAC
* * * *
2316187 AACTCTGTGGCACCCTTTTAAGTTTACAACTCTATGGCATCCTATTAAGTCCAAAACTTCGTGGC
195 AACTCTGTGGCACCCTTTTAAGTCTACAACTCCATGGCATCCTATTAAATCCAAAACTTAGTGGC
* * * * *
2316252 ACCCTCCAAAGTCCACAACTCAGTAGCATCTCTTCTCCAAGTCCACGACTTAGCGGCATCTTTTT
260 ACCCTCCAAAGTCCACAACTCAGTAGCATCTCTTCTCCAAGTCCACAACTAAGCAGCATCCTCTT
* * * *
2316317 TTCTCCAAAAGTCCACAACTTAGTGGCATCCTTCTTCTCCTAAAGTCCATAACTTAATGGCATCT
325 TTCTCCAAAAGTCCACAACTTAGTGCCATCCTTCTTCTCCCAAAGTCAATAACTCAATGGCATCT
*
2316382 CTTCTCTAAGTCCATAACTCCATAGCACCTTTTCCACT
390 CTTCTCTAAGTCCAAAACTCCATAGCACCTTTTCCACT
* * *
2316420 TAAGTCTACAACTTCGTGGCACCTTTTCCTTTTAAGTCTACAACTCCGTGGCACCCTTTCTATTT
1 TAAGTCCACAACTTCGTGGCACCTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTTTCT-TTT
* * * *
2316485 AAGTCTACAACTCCGTAGCACCTTTTTAAGTCCACAACTCTGTGGCACCTTTATCCCTTTTAAGT
65 AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTATCCCTATTAAGT
* * ** *
2316550 CCACAACTCTGTGGCACATTTTTCCCTTTTAGTCC-ACAACTTTGTGACACCTTATT-CC-TTCA
130 CCACAACTCCGTGGCAC---CTT---TTGAAG-CCTACAACTCTGTGACACCTTATTCCCTTTCA
* * * * * * **
2316612 ATTCCATAACTCTGTGGTATCCTTTTAAGTCTACAACTCCGTGGCA-CCT-TTCAAAATTCACGA
188 ACTCCACAACTCTGTGGCACCCTTTTAAGTCTACAACTCCATGGCATCCTATT--AAATCCAAAA
* ** * * *
2316675 CTTATTGGCATCCTTTTACTTCCAAAAGTCCACGGCTTAGTGGCATCCTTTTTCTCACAAGTCCA
251 CTTAGTGGCA-CC-----C-TCC-AAAGTCCACAACTCAGTAGCAT-C-TCTTCTC-CAAGTCCA
* * ** * *
2316740 CAACTAAGTAGCATCCTCTTTTGTCCAAAAGTCCATGACTTAGTGCCATCCTTTTTGTCCCAAAG
305 CAACTAAGCAGCATCCTCTTTTCTCCAAAAGTCCACAACTTAGTGCCATCCTTCTTCTCCCAAAG
* * ** * *
2316805 TCAATGACTCAATGGCATCTCTTCTCTAGGTCCAAAACTCTGTGGCACC-TTTCCTATT
370 TCAATAACTCAATGGCATCTCTTCTCTAAGTCCAAAACTCCATAGCACCTTTTCC-ACT
* * *
2316863 TAAGTCCACATCTTCG-GTGCACCTTTTCCTTTTTAGTCCATAACTCGGTGGCA-CC--T-TTTT
1 TAAGTCCACAACTTCGTG-GCACCTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTTTCTTTT
*
2316923 AAGTCCACAACTCCGTGGCACCATTTTAAGTCCACAACTCTATG
65 AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATG
2316967 ACACTTTTCT
Statistics
Matches: 454, Mismatches: 70, Indels: 36
0.81 0.12 0.06
Matches are distributed among these distances:
427 2 0.00
428 130 0.29
430 2 0.00
431 5 0.01
432 56 0.12
433 4 0.01
434 23 0.05
435 2 0.00
438 44 0.10
439 4 0.01
440 19 0.04
441 1 0.00
442 14 0.03
443 148 0.33
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (427 bp):
TAAGTCCACAACTTCGTGGCACCTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTTTCTTTTA
AGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCACCTTTATCCCTATTAAGTC
CACAACTCCGTGGCACCTTTTGAAGCCTACAACTCTGTGACACCTTATTCCCTTTCAACTCCACA
ACTCTGTGGCACCCTTTTAAGTCTACAACTCCATGGCATCCTATTAAATCCAAAACTTAGTGGCA
CCCTCCAAAGTCCACAACTCAGTAGCATCTCTTCTCCAAGTCCACAACTAAGCAGCATCCTCTTT
TCTCCAAAAGTCCACAACTTAGTGCCATCCTTCTTCTCCCAAAGTCAATAACTCAATGGCATCTC
TTCTCTAAGTCCAAAACTCCATAGCACCTTTTCCACT
Found at i:2316927 original size:27 final size:27
Alignment explanation
Indices: 2316890--2317048 Score: 126
Period size: 27 Copynumber: 5.7 Consensus size: 27
2316880 TGCACCTTTT
* * *
2316890 CCTTTTT-AGTCCATAACTCGGTGGCA
1 CCTTTTTAAGTCCACAACTCTGTGACA
* *
2316916 CCTTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTTAAGTCCACAACTCTGTGACA
* *
2316943 CCATTTTAAGTCCACAACTCTATGACA
1 CCTTTTTAAGTCCACAACTCTGTGACA
*
2316970 -CTTTTCTAAGTCCATAACTCTGTGACA
1 CCTTTT-TAAGTCCACAACTCTGTGACA
* * * *
2316997 GCTTTTTCCTTTAAGTTCACGACTCTGTGGCA
1 -C--CTT--TTTAAGTCCACAACTCTGTGACA
2317029 TCC-TTTTAAGTCCACAACTC
1 -CCTTTTTAAGTCCACAACTC
2317049 CACAACACCC
Statistics
Matches: 107, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
26 11 0.10
27 73 0.68
29 1 0.01
31 2 0.02
32 18 0.17
33 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (27 bp):
CCTTTTTAAGTCCACAACTCTGTGACA
Found at i:2317131 original size:35 final size:35
Alignment explanation
Indices: 2317092--2317162 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
2317082 ATCTCTTCTC
* *
2317092 AAGTCCACGACTTAATGGCATCCTTTTTCTTCCAA
1 AAGTCCACAACATAATGGCATCCTTTTTCTTCCAA
*
2317127 AAGTCCACAACATAGTGGCATCCTTTTTCTTCCAA
1 AAGTCCACAACATAATGGCATCCTTTTTCTTCCAA
2317162 A
1 A
2317163 GTCAATGACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.32
Consensus pattern (35 bp):
AAGTCCACAACATAATGGCATCCTTTTTCTTCCAA
Found at i:2317181 original size:34 final size:35
Alignment explanation
Indices: 2317092--2317182 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
2317082 ATCTCTTCTC
*
2317092 AAGTCCACGACTTA-ATGGCATCCTTTTTCTTCCAA
1 AAGTCAACGACTTAGA-GGCATCCTTTTTCTTCCAA
* * * *
2317127 AAGTCCACAACATAGTGGCATCCTTTTTCTTCC-A
1 AAGTCAACGACTTAGAGGCATCCTTTTTCTTCCAA
*
2317161 AAGTCAATGACTTAGAGGCATC
1 AAGTCAACGACTTAGAGGCATC
2317183 TCTTCTCTAA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
34 18 0.38
35 29 0.62
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (35 bp):
AAGTCAACGACTTAGAGGCATCCTTTTTCTTCCAA
Found at i:2317239 original size:32 final size:31
Alignment explanation
Indices: 2317190--2317536 Score: 153
Period size: 27 Copynumber: 11.9 Consensus size: 31
2317180 ATCTCTTCTC
2317190 TAAGTCCACAA-TACTGTGGCACCTTTTCCTTT
1 TAAGTCCACAACT-CTGTGGCACCTTTT-CTTT
* * *
2317222 TAAGTCCATAACTCTGTGGCACCATCTCTTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCTTT
2317253 TAAGTCCACAACTCTGTGGCACC----CTTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCTTT
* ** *
2317280 TAAGTCTACAACTCCATCGCACC---T-TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCTTT
* *
2317307 TAAATCCACAACTCTATGGCACCTTCTTTCCTTT
1 TAAGTCCACAACTCTGTGGCACC-T-TTT-CTTT
* *
2317341 TAAGTCCACAACTTTGTGGCAGC---T-TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCTTT
* * *
2317368 TAAGTCCACAA-TTTCGGGGC-GC--TT-TTT
1 TAAGTCCACAACTCT-GTGGCACCTTTTCTTT
*
2317395 TAAGTCCACAACTCTAT-GCACC---T-TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCTTT
* *
2317421 TAA-ACACACAACTCTGTGACACCTTTTTCCCTTT
1 TAAGTC-CACAACTCTGTGGCACC-TTTT--CTTT
* * ** *
2317455 TAAGTCCAAAACTCCGT-G-ACAATTT-TTC
1 TAAGTCCACAACTCTGTGGCACCTTTTCTTT
** **
2317483 TAAGTCCACAACTCCATAACACC---T-TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCTTT
2317510 TAAGTCCACAACTCTGTGGCACCTTTT
1 TAAGTCCACAACTCTGTGGCACCTTTT
2317537 TATGTCCACA
Statistics
Matches: 247, Mismatches: 40, Indels: 58
0.72 0.12 0.17
Matches are distributed among these distances:
25 1 0.00
26 24 0.10
27 105 0.43
28 19 0.08
29 1 0.00
30 3 0.01
31 30 0.12
32 25 0.10
33 1 0.00
34 37 0.15
35 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (31 bp):
TAAGTCCACAACTCTGTGGCACCTTTTCTTT
Found at i:2317359 original size:88 final size:85
Alignment explanation
Indices: 2317219--2317552 Score: 240
Period size: 88 Copynumber: 3.9 Consensus size: 85
2317209 CACCTTTTCC
* * *
2317219 TTTTAAGTCCATAACTCTGTGGCACCATCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAG
1 TTTTAAGTCCACAACTCTATGGCACCTTCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAG
* *
2317284 TCTACAACTCCATCGCACCT
66 TCCACAACTCCAGCGCACCT
* * * *
2317304 TTTTAAATCCACAACTCTATGGCACCTTCTTTCCTTTTAAGTCCACAACTTTGTGGCAGCTTTTT
1 TTTTAAGTCCACAACTCTATGGCACCTTC--T-CTTTTAAGTCCACAACTCTGTGGCACCCTTTT
* * * * * *
2317369 AAGTCCACAATTTCGGGGCGCTT
63 AAGTCCACAACTCCAGCGCACCT
* *
2317392 TTTTAAGTCCACAACTCTAT-GCA-C--CT-TTTTAA-ACACACAACTCTGTGACACCTTTTTCC
1 TTTTAAGTCCACAACTCTATGGCACCTTCTCTTTTAAGTC-CACAACTCTGTGGCA-------CC
* * **
2317451 CTTTTAAGTCCAAAACTCC-GTGACAATT
58 CTTTTAAGTCCACAACTCCAGCG-CACCT
* ** * *
2317479 TTTCTAAGTCCACAACTCCATAACA-C--CT-TTTTAAGTCCACAACTCTGTGGCACCTTTTTAT
1 TTT-TAAGTCCACAACTCTATGGCACCTTCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAA
2317540 GTCCACAACTCCA
65 GTCCACAACTCCA
2317553 TGACACTTTT
Statistics
Matches: 199, Mismatches: 34, Indels: 34
0.75 0.13 0.13
Matches are distributed among these distances:
79 1 0.01
80 19 0.10
82 19 0.10
84 1 0.01
85 25 0.13
86 3 0.02
87 26 0.13
88 79 0.40
89 25 0.13
90 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (85 bp):
TTTTAAGTCCACAACTCTATGGCACCTTCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAG
TCCACAACTCCAGCGCACCT
Found at i:2317444 original size:114 final size:116
Alignment explanation
Indices: 2317209--2317569 Score: 324
Period size: 115 Copynumber: 3.1 Consensus size: 116
2317199 AATACTGTGG
* * *
2317209 CACC-TTTTCCTTTTAAGTCCATAACTCTGTGGCACCATCTCTTTTAAGTCCACAACTCTGTGGC
1 CACCTTTTTCCTTTTAAGTCCAAAACTCTGTGG--CCAGCTCTTTTAAGTCCACAACTCTGGGGC
* *
2317273 ACCCTTTTAAGTCTACAACTCCATCGCACCTTTTTAAATCCACAACTCTATGG
64 ACCCTTTTAAGTCCACAACTCCATCGCACCTTTTTAAATCCACAACTCTATGA
* * *
2317326 CACCTTCTTTCCTTTTAAGTCCACAACTTTGTGG-CAGCT-TTTTAAGTCCACAA-TTTCGGGGC
1 CACCTT-TTTCCTTTTAAGTCCAAAACTCTGTGGCCAGCTCTTTTAAGTCCACAACTCT-GGGGC
* ** * *
2317388 GCTTTTTTAAGTCCACAACTCTAT-GCACCTTTTTAAA-CACACAACTCTGTGA
64 ACCCTTTTAAGTCCACAACTCCATCGCACCTTTTTAAATC-CACAACTCTATGA
* * * * *****
2317440 CACCTTTTTCCCTTTTAAGTCCAAAACTCCGT-GACA-ATTTTTCTAAGTCCACAACTCCATAAC
1 CACCTTTTT-CCTTTTAAGTCCAAAACTCTGTGGCCAGCTCTTT-TAAGTCCACAACTCTGGGGC
* ** * ** *
2317503 ACCTTTTTAAGTCCACAACTCTGTGGCACCTTTTTATGTCCACAACTCCATGA
64 ACCCTTTTAAGTCCACAACTCCATCGCACCTTTTTAAATCCACAACTCTATGA
*
2317556 CACTTTTTTTCCTT
1 CAC-CTTTTTCCTT
2317570 CGACTCCACA
Statistics
Matches: 202, Mismatches: 30, Indels: 25
0.79 0.12 0.10
Matches are distributed among these distances:
113 6 0.03
114 56 0.28
115 70 0.35
116 34 0.17
117 10 0.05
118 1 0.00
119 25 0.12
ACGTcount: A:0.24, C:0.30, G:0.10, T:0.36
Consensus pattern (116 bp):
CACCTTTTTCCTTTTAAGTCCAAAACTCTGTGGCCAGCTCTTTTAAGTCCACAACTCTGGGGCAC
CCTTTTAAGTCCACAACTCCATCGCACCTTTTTAAATCCACAACTCTATGA
Found at i:2317549 original size:54 final size:55
Alignment explanation
Indices: 2317452--2317564 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 55
2317442 CCTTTTTCCC
*
2317452 TTTTAAGTCCAAAACTCCGTGACAATTTTTCTAAGTCCACAACTCCATAACACCT
1 TTTTAAGTCCAAAACTCCGTGACAACTTTTCTAAGTCCACAACTCCATAACACCT
* * * * * * *
2317507 TTTTAAGTCCACAACTCTGTGGCACCTTTT-TATGTCCACAACTCCATGACACTT
1 TTTTAAGTCCAAAACTCCGTGACAACTTTTCTAAGTCCACAACTCCATAACACCT
2317561 TTTT
1 TTTT
2317565 TCCTTCGACT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
54 25 0.50
55 25 0.50
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.35
Consensus pattern (55 bp):
TTTTAAGTCCAAAACTCCGTGACAACTTTTCTAAGTCCACAACTCCATAACACCT
Found at i:2317563 original size:27 final size:27
Alignment explanation
Indices: 2317452--2317564 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
2317442 CCTTTTTCCC
* * **
2317452 TTTTAAGTCCAAAACTCCGTGACAATT
1 TTTTAAGTCCACAACTCCATGACACCT
*
2317479 TTTCTAAGTCCACAACTCCATAACACCT
1 TTT-TAAGTCCACAACTCCATGACACCT
** *
2317507 TTTTAAGTCCACAACTCTGTGGCACCT
1 TTTTAAGTCCACAACTCCATGACACCT
* *
2317534 TTTTATGTCCACAACTCCATGACACTT
1 TTTTAAGTCCACAACTCCATGACACCT
2317561 TTTT
1 TTTT
2317565 TCCTTCGACT
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 49 0.69
28 22 0.31
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCATGACACCT
Found at i:2317835 original size:31 final size:30
Alignment explanation
Indices: 2317768--2317866 Score: 96
Period size: 27 Copynumber: 3.3 Consensus size: 30
2317758 CACAGCCCCA
* * * *
2317768 TGGCACCGTTTCCTTCTAAGTCCACAACTCCG
1 TGGCACC--TTCCTTTTAAATCCATAACTTCG
*
2317800 TGGCACCTTCTCTTTTAACTCCATAACTTCG
1 TGGCACCTTC-CTTTTAAATCCATAACTTCG
2317831 TGGCA-C--CCTTTTAAATCCATAACTTCG
1 TGGCACCTTCCTTTTAAATCCATAACTTCG
*
2317858 TGGCTCCTT
1 TGGCACCTT
2317867 TTTAAGTCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
27 23 0.40
28 2 0.04
30 4 0.07
31 21 0.37
32 7 0.12
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.34
Consensus pattern (30 bp):
TGGCACCTTCCTTTTAAATCCATAACTTCG
Found at i:2317893 original size:27 final size:27
Alignment explanation
Indices: 2317812--2317896 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
2317802 GCACCTTCTC
* *
2317812 TTTTAACTCCATAACTTCGTGGCACCC
1 TTTTAAATCCATAACTTCGTGGCACCT
*
2317839 TTTTAAATCCATAACTTCGTGGCTCCT
1 TTTTAAATCCATAACTTCGTGGCACCT
* * **
2317866 TTTTAAGTCCACAACTTCGCAGCACCT
1 TTTTAAATCCATAACTTCGTGGCACCT
2317893 TTTT
1 TTTT
2317897 CCCTTTTAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (27 bp):
TTTTAAATCCATAACTTCGTGGCACCT
Found at i:2318028 original size:31 final size:30
Alignment explanation
Indices: 2317945--2318010 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
2317935 GCCCAACTCC
* *
2317945 GTGGCATCTCTACTCTAAGTCCATAATTCA
1 GTGGCATGTCTTCTCTAAGTCCATAATTCA
*
2317975 GTGGCATGTCTTCTCTAAGTCCATAATTCC
1 GTGGCATGTCTTCTCTAAGTCCATAATTCA
2318005 GTGGCA
1 GTGGCA
2318011 CTTTTTCCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (30 bp):
GTGGCATGTCTTCTCTAAGTCCATAATTCA
Found at i:2318057 original size:27 final size:27
Alignment explanation
Indices: 2318019--2318115 Score: 86
Period size: 27 Copynumber: 3.6 Consensus size: 27
2318009 CACTTTTTCC
* * * * *
2318019 TTTAAGTCCACAATTTTGTGGCATCCT
1 TTTAAGCCCACAACTCTATGGCACCCT
2318046 TTTAAGCCCACAACTCTATGGCACCCT
1 TTTAAGCCCACAACTCTATGGCACCCT
** * * *
2318073 TTTAAATCCACAACTCTGTGACACCTT
1 TTTAAGCCCACAACTCTATGGCACCCT
* *
2318100 TTTAAGTCCAAAACTC
1 TTTAAGCCCACAACTC
2318116 CGCGGCACCT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (27 bp):
TTTAAGCCCACAACTCTATGGCACCCT
Found at i:2318103 original size:54 final size:54
Alignment explanation
Indices: 2318019--2318156 Score: 143
Period size: 54 Copynumber: 2.6 Consensus size: 54
2318009 CACTTTTTCC
* * * * *
2318019 TTTAAGTCCACAATTTTGTGGCATCC-TTTTAAGCCCACAACTCTATGGCACCCT
1 TTTAAGTCCACAACTCTGTGGCA-CCTTTTTAAGCCCAAAACTCCACGGCACCCT
* * * * *
2318073 TTTAAATCCACAACTCTGTGACACCTTTTTAAGTCCAAAACTCCGCGGCACCTT
1 TTTAAGTCCACAACTCTGTGGCACCTTTTTAAGCCCAAAACTCCACGGCACCCT
* * *
2318127 TTTATGTCCAAAACTCCGTGGCACCTTTTT
1 TTTAAGTCCACAACTCTGTGGCACCTTTTT
2318157 TCCTTTAAGT
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
53 2 0.03
54 66 0.97
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (54 bp):
TTTAAGTCCACAACTCTGTGGCACCTTTTTAAGCCCAAAACTCCACGGCACCCT
Found at i:2318124 original size:27 final size:27
Alignment explanation
Indices: 2318036--2318156 Score: 127
Period size: 27 Copynumber: 4.5 Consensus size: 27
2318026 CCACAATTTT
* * *
2318036 GTGGCATCC-TTTTAAGCCCACAACTCT
1 GTGGCA-CCTTTTTAAGTCCAAAACTCC
* * * * *
2318063 ATGGCACCCTTTTAAATCCACAACTCT
1 GTGGCACCTTTTTAAGTCCAAAACTCC
*
2318090 GTGACACCTTTTTAAGTCCAAAACTCC
1 GTGGCACCTTTTTAAGTCCAAAACTCC
* *
2318117 GCGGCACCTTTTTATGTCCAAAACTCC
1 GTGGCACCTTTTTAAGTCCAAAACTCC
2318144 GTGGCACCTTTTT
1 GTGGCACCTTTTT
2318157 TCCTTTAAGT
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.03
27 78 0.98
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.31
Consensus pattern (27 bp):
GTGGCACCTTTTTAAGTCCAAAACTCC
Found at i:2318302 original size:33 final size:33
Alignment explanation
Indices: 2318212--2318370 Score: 171
Period size: 33 Copynumber: 4.8 Consensus size: 33
2318202 CCATGGCACC
* *
2318212 CTTCAAAGTCCACGACTTAGTGGCAT-C-TCTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* *
2318243 C-TCTAAGTCCACGACTTAGTGCCATCCTTTTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* *
2318275 CTTCCAAGTCCACAACTCAGTGGCATCCTTTTT
1 CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
* *
2318308 CTTCCAAAAGTCCACGACTTAGTAGCATCCTTTGT
1 CTTCC--AAGTCCACGACTTAGTGGCATCCTTTTT
* * *
2318343 CTCCCAAAGTGCACGACTTAGTAGCATC
1 CTTCC-AAGTCCACGACTTAGTGGCATC
2318371 TCTTCTCTAA
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
30 22 0.20
31 2 0.02
32 4 0.04
33 32 0.29
34 22 0.20
35 28 0.25
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.31
Consensus pattern (33 bp):
CTTCCAAGTCCACGACTTAGTGGCATCCTTTTT
Found at i:2318440 original size:32 final size:32
Alignment explanation
Indices: 2318382--2318464 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 32
2318372 CTTCTCTAAT
* *
2318382 TCCACAACTCCAGGGCACCATTTCCTTTTAAG
1 TCCACAACTTCGGGGCACCATTTCCTTTTAAG
*
2318414 TCCATAACTTCGGGGCACC-TTCTCCTTTTAAG
1 TCCACAACTTCGGGGCACCATT-TCCTTTTAAG
* * *
2318446 TTCACAACTTTGTGGCACC
1 TCCACAACTTCGGGGCACC
2318465 CGTTTAAGTC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (32 bp):
TCCACAACTTCGGGGCACCATTTCCTTTTAAG
Found at i:2318580 original size:27 final size:27
Alignment explanation
Indices: 2318528--2318642 Score: 95
Period size: 27 Copynumber: 4.1 Consensus size: 27
2318518 CTTTTTTCCA
* *
2318528 TTTTAAGTCCACAACTCCACGACACCC
1 TTTTAAGTCCACAACTCCATGGCACCC
*
2318555 TTTTAAGTCCACAACTCCATGGCACCATTTT
1 TTTTAAGTCCACAACTCCATGGCACC----C
* * * * *
2318586 TCTTTAAGTCCATAATTTCGTGGCATCC
1 T-TTTAAGTCCACAACTCCATGGCACCC
**
2318614 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCATGGCACCC
2318641 TT
1 TT
2318643 CAAAGTCAAT
Statistics
Matches: 69, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
27 47 0.68
28 1 0.01
31 1 0.01
32 20 0.29
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.33
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCATGGCACCC
Found at i:2318621 original size:59 final size:61
Alignment explanation
Indices: 2318467--2318639 Score: 183
Period size: 62 Copynumber: 2.9 Consensus size: 61
2318457 GTGGCACCCG
* * *
2318467 TTTAAGTCCATAAC-CCTATGGC-TCCTTTTTTAGTCCACAACTCCGTGGCACCTTTTTTCCA
1 TTTAAGTCCACAACTCC-ATGGCATCC-TTTTAAGTCCACAACTCCGTGGCACCATTTTTCCA
* * * *
2318528 TTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAACTCCATGGCACCATTTTT-C-
1 -TTTAAGTCCACAACTCCATGGCATCCTTTTAAGTCCACAACTCCGTGGCACCATTTTTCCA
* * * * *
2318588 TTTAAGTCCATAATTTCGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACC
1 TTTAAGTCCACAACTCCATGGCATCCTTTTAAGTCCACAACTCCGTGGCACC
2318640 CTTCAAAGTC
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
59 43 0.46
61 1 0.01
62 45 0.48
63 4 0.04
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (61 bp):
TTTAAGTCCACAACTCCATGGCATCCTTTTAAGTCCACAACTCCGTGGCACCATTTTTCCA
Found at i:2318711 original size:33 final size:33
Alignment explanation
Indices: 2318673--2318823 Score: 98
Period size: 33 Copynumber: 4.7 Consensus size: 33
2318663 CATCTTTTCC
*
2318673 CCAAGTCCACAACTTAGTGGCATTTTTTTTCTT
1 CCAAGTCCACAACTTAGTGGCATCTTTTTTCTT
* * * * *
2318706 CCAAGTACACGACTTAGTGTCATCTCTTATC-T
1 CCAAGTCCACAACTTAGTGGCATCTTTTTTCTT
**
2318738 --AAGTCCACAACTCTA-TGGCAT-TTTTCCCTT
1 CCAAGTCCACAACT-TAGTGGCATCTTTTTTCTT
** * * *
2318768 GTAAGTCCAAAACTTCGTGGCACCCTTTTTTCTT
1 CCAAGTCCACAACTTAGTGGCA-TCTTTTTTCTT
**
2318802 TTAAGTCCACAACTCT-GTGGCA
1 CCAAGTCCACAACT-TAGTGGCA
2318824 CCCTTTTAAA
Statistics
Matches: 91, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
29 4 0.04
30 16 0.18
31 3 0.03
32 17 0.19
33 25 0.27
34 25 0.27
35 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.36
Consensus pattern (33 bp):
CCAAGTCCACAACTTAGTGGCATCTTTTTTCTT
Found at i:2318837 original size:27 final size:28
Alignment explanation
Indices: 2318799--2319011 Score: 123
Period size: 27 Copynumber: 7.4 Consensus size: 28
2318789 ACCCTTTTTT
2318799 CTTTTAAGTCCACAACTCT-GTGGCACC
1 CTTTTAAGTCCACAACTCTCGTGGCACC
* *
2318826 CTTTTAAATCCACAACT-TCGTGGCAGC
1 CTTTTAAGTCCACAACTCTCGTGGCACC
* ****
2318853 TTTTTAAGTCCACAACTCTACAGCACCTTTTTCC
1 CTTTTAAGTCCACAACTCT-C-G----TGGCACC
* **
2318887 CTTTTAAGTTCACAACT-TTATGGCACC
1 CTTTTAAGTCCACAACTCTCGTGGCACC
* *
2318914 TTTTTAAGTTCACAACTC-CGTGGCACC
1 CTTTTAAGTCCACAACTCTCGTGGCACC
* * *
2318941 TTTTTCCTTTATGTCCACAACTCT-GTGGCATC
1 -----CTTTTAAGTCCACAACTCTCGTGGCACC
* *
2318973 CTTCTAAGTCCACAACTC-CGTGGCACA
1 CTTTTAAGTCCACAACTCTCGTGGCACC
*
2319000 CTTTAAAGTCCA
1 CTTTTAAGTCCA
2319012 TGACACAGTG
Statistics
Matches: 138, Mismatches: 32, Indels: 32
0.68 0.16 0.16
Matches are distributed among these distances:
26 1 0.01
27 95 0.69
28 1 0.01
29 1 0.01
30 1 0.01
32 21 0.15
33 1 0.01
34 17 0.12
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (28 bp):
CTTTTAAGTCCACAACTCTCGTGGCACC
Found at i:2318901 original size:34 final size:34
Alignment explanation
Indices: 2318854--2318918 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
2318844 CGTGGCAGCT
2318854 TTTTAAGTCCACAACTCTACAGCACCTTTTTCCC
1 TTTTAAGTCCACAACTCTACAGCACCTTTTTCCC
* * **
2318888 TTTTAAGTTCACAACTTTATGGCACCTTTTT
1 TTTTAAGTCCACAACTCTACAGCACCTTTTT
2318919 AAGTTCACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.23, C:0.28, G:0.08, T:0.42
Consensus pattern (34 bp):
TTTTAAGTCCACAACTCTACAGCACCTTTTTCCC
Found at i:2318930 original size:360 final size:359
Alignment explanation
Indices: 2318315--2319173 Score: 939
Period size: 360 Copynumber: 2.4 Consensus size: 359
2318305 TTTCTTCCAA
* * * * *
2318315 AAGTCCACGACTTAGTAGCATCCTTTGTCTCCCAAAGTGCACGACTTAGTAGCATCTCTTCTCTA
1 AAGTCCACGACTTAGTGGCATCCTTTTTCTTCC-AAGTACACGACTTAGT-GCATCTCTTATCTA
* * * * * * *
2318380 ATTCCACAACTCCAGGGCACCATTTCCTTTTAAGTCCATAACTTCGGGGCACC-TTCTCCTTTTA
64 AGTCCACAACTCTATGGCACCTTTTCCTTTTAAGTCCAAAACTTCGTGGCACCTTTTTCCTTTTA
* * * * * *
2318444 AGTTCACAACTTTGTGGCACCCGTTTAAGTCCATAACCCTATGGCTCCTTTTTTAGTCCACAACT
129 AGTCCACAACTCTGTGGCACCCGTTTAAATCCACAACCCTATGGCACCTTTTTAAGTCCACAACT
***
2318509 CCGTGGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAACTCCA
194 CCACAGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAACTCCA
* * * *
2318574 TGGCACCATTTTT-CTTTAAGTCCATAA-TTTCGTGGCATCCTTTTAAGTCCACAACTCTGTGGC
259 TGGCACC-TTTTTCCTTTAAGTCCACAACTCT-GTGGCATCCTTCTAAGTCCACAACTCCGTGGC
* * ** *
2318637 ACCCTTCAAAGTCAATTACTTAG-GCGCATCTTTTCCCC
322 ACACTTCAAAGTCAATGACACAGTG-GCATCTCTTCCCC
* **
2318675 AAGTCCACAACTTAGTGGCATTTTTTTTCTTCCAAGTACACGACTTAGTGTCATCTCTTATCTAA
1 AAGTCCACGACTTAGTGGCATCCTTTTTCTTCCAAGTACACGACTTAGTG-CATCTCTTATCTAA
* * *
2318740 GTCCACAACTCTATGGCA-TTTTTCCCTTGTAAGTCCAAAACTTCGTGGCACCCTTTTTTCTTTT
65 GTCCACAACTCTATGGCACCTTTT-CCTTTTAAGTCCAAAACTTCGTGGCA-CCTTTTTCCTTTT
* * * *
2318804 AAGTCCACAACTCTGTGGCACCCTTTTAAATCCACAA-CTTCGTGGCAGCTTTTTAAGTCCACAA
128 AAGTCCACAACTCTGTGGCACCCGTTTAAATCCACAACCCT-ATGGCACCTTTTTAAGTCCACAA
* * * ** * * * *
2318868 CTCTACAGCACC-TTTTTCCCTTTTAAGTTCACAACTTTATGGCACCTTTTTAAGTTCACAACTC
192 CTCCACAGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAACTC
* *
2318932 CGTGGCACCTTTTTCCTTTATGTCCACAACTCTGTGGCATCCTTCTAAGTCCACAACTCCGTGGC
257 CATGGCACCTTTTTCCTTTAAGTCCACAACTCTGTGGCATCCTTCTAAGTCCACAACTCCGTGGC
* * *
2318997 ACACTTTAAAGTCCATGACACAGTGGCATCTCTTGCCC
322 ACACTTCAAAGTCAATGACACAGTGGCATCTCTTCCCC
* * * * * *
2319035 AAGTTCACGGC-TCGATGGCATCCTTTTTCTTCCAAGTCCACGACTCAATGGCATC-CATTATCT
1 AAGTCCACGACTTAG-TGGCATCCTTTTTCTTCCAAGTACACGACTTAGT-GCATCTC-TTATCT
* * * *
2319098 AAGTCCACAACTTTGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCA--TATTTTCCTTT
63 AAGTCCACAACTCTATGGCACCTTTTCCTTTTAAGTCCAAAACTTCGTGGCACCT-TTTTCCTTT
*
2319161 TAATTCCACAACT
127 TAAGTCCACAACT
2319174 TCATGGCACC
Statistics
Matches: 415, Mismatches: 71, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
357 1 0.00
358 24 0.06
359 74 0.18
360 241 0.58
361 75 0.18
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (359 bp):
AAGTCCACGACTTAGTGGCATCCTTTTTCTTCCAAGTACACGACTTAGTGCATCTCTTATCTAAG
TCCACAACTCTATGGCACCTTTTCCTTTTAAGTCCAAAACTTCGTGGCACCTTTTTCCTTTTAAG
TCCACAACTCTGTGGCACCCGTTTAAATCCACAACCCTATGGCACCTTTTTAAGTCCACAACTCC
ACAGCACCTTTTTTCCATTTTAAGTCCACAACTCCACGACACCCTTTTAAGTCCACAACTCCATG
GCACCTTTTTCCTTTAAGTCCACAACTCTGTGGCATCCTTCTAAGTCCACAACTCCGTGGCACAC
TTCAAAGTCAATGACACAGTGGCATCTCTTCCCC
Found at i:2318987 original size:59 final size:59
Alignment explanation
Indices: 2318824--2319003 Score: 184
Period size: 61 Copynumber: 3.0 Consensus size: 59
2318814 CTCTGTGGCA
* * ****
2318824 CCCTTTTAAATCCACAACTTCGTGGCAGCTTTTTAAGTCCACAACTCTACAGCACCTTTTT
1 CCCTTTTAAGTCCACAACTT-GTGGCA-CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
2318885 CCCTTTTAAGTTCACAACTTTATGGCACCTTTTTAAGTTCACAACTCCGTGGCACCTTTTT
1 CCCTTTTAAGTCCACAAC-TTGTGGCACC-TTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
2318946 -CC-TTTATGTCCACAACTCTGTGGCATCCTTCTAAGTCCACAACTCCGTGGCACACTTT
1 CCCTTTTAAGTCCACAACT-TGTGGCA-CCTTTTAAGTCCACAACTCCGTGGCAC-CTTT
2319004 AAAGTCCATG
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
58 1 0.01
59 41 0.41
60 9 0.09
61 47 0.47
62 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (59 bp):
CCCTTTTAAGTCCACAACTTGTGGCACCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
Found at i:2319135 original size:32 final size:32
Alignment explanation
Indices: 2319097--2319369 Score: 193
Period size: 32 Copynumber: 8.8 Consensus size: 32
2319087 ATCCATTATC
*
2319097 TAAGTCCACAACTTTGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
* **
2319129 TAAGTCCACAACTCCGTGGCATATTTTCCTTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
* * *
2319161 TAATTCCACAACT-TCATGGCACCATTTTTCCCTT
1 TAAGTCCACAACTCT-GTGGCACC--TTTTCCTTT
* * * *
2319195 TAAGTACATAACTCTGTGGTA---ATT--TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
*
2319222 GAAGTCCACAACTCTGTGGCA-C--TT--TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
* *
2319249 GAAGTCCACAACTCTGTGGCACTTTTTTCCCTTT
1 TAAGTCCACAACTCTGTGGCAC-CTTTT-CCTTT
*
2319283 TAGGTCCACAACTCTGTGGCACC---T--TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
*
2319310 TAAGTCCACAACTCCGTGGCACCTTTTTCC-TT
1 TAAGTCCACAACTCTGTGGCACC-TTTTCCTTT
* **
2319342 TATGTCCACAACTCCATGGCATCCTTTT
1 TAAGTCCACAACTCTGTGGCA-CCTTTT
2319370 ATGTCCACAA
Statistics
Matches: 193, Mismatches: 29, Indels: 38
0.74 0.11 0.15
Matches are distributed among these distances:
27 69 0.36
29 2 0.01
30 1 0.01
31 3 0.02
32 70 0.36
33 2 0.01
34 45 0.23
35 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.13, T:0.37
Consensus pattern (32 bp):
TAAGTCCACAACTCTGTGGCACCTTTTCCTTT
Found at i:2319197 original size:34 final size:33
Alignment explanation
Indices: 2319097--2319354 Score: 134
Period size: 27 Copynumber: 8.4 Consensus size: 33
2319087 ATCCATTATC
*
2319097 TAAGTCCACAACTTTGTGGCACC-TTTTCCTTT
1 TAAGTCCACAACTTCGTGGCACCATTTTCCTTT
* *
2319129 TAAGTCCACAACTCCGTGGCA-TATTTTCCTTT
1 TAAGTCCACAACTTCGTGGCACCATTTTCCTTT
* * *
2319161 TAATTCCACAACTTCATGGCACCATTTTTCCCTT
1 TAAGTCCACAACTTCGTGGCACCA-TTTTCCTTT
* * *
2319195 TAAGTACATAAC-TCTGTGGTA--A--TT--TTT
1 TAAGTCCACAACTTC-GTGGCACCATTTTCCTTT
*
2319222 GAAGTCCACAAC-TCTGTGGCA-C---TT--TTT
1 TAAGTCCACAACTTC-GTGGCACCATTTTCCTTT
* **
2319249 GAAGTCCACAAC-TCTGTGGCACTTTTTTCCCTTT
1 TAAGTCCACAACTTC-GTGGCACCATTTT-CCTTT
*
2319283 TAGGTCCACAAC-TCTGTGGCACC----T--TTT
1 TAAGTCCACAACTTC-GTGGCACCATTTTCCTTT
* *
2319310 TAAGTCCACAACTCCGTGGCACCTTTTTCC-TT
1 TAAGTCCACAACTTCGTGGCACCATTTTCCTTT
*
2319342 TATGTCCACAACT
1 TAAGTCCACAACT
2319355 CCATGGCATC
Statistics
Matches: 182, Mismatches: 25, Indels: 38
0.74 0.10 0.16
Matches are distributed among these distances:
27 67 0.37
28 1 0.01
29 2 0.01
30 1 0.01
31 3 0.02
32 61 0.34
33 3 0.02
34 44 0.24
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.37
Consensus pattern (33 bp):
TAAGTCCACAACTTCGTGGCACCATTTTCCTTT
Found at i:2319199 original size:392 final size:393
Alignment explanation
Indices: 2318737--2319462 Score: 996
Period size: 392 Copynumber: 1.8 Consensus size: 393
2318727 ATCTCTTATC
* * * * *
2318737 TAAGTCCACAACTCTATGGCATTTTTCCCTTGTAAGTCCAAAACTTCGTGGCACCCTTTTTTCTT
1 TAAGTCCACAACTCCATGGCATTTTTCCCTTGTAAGTCCAAAACTTCATGGCACCATTTTTCCCT
* *
2318802 TTAAGTCCACAACTCTGTGGCACCCTTTT-AAATCCACAACT-TCGTGGCAGCTTTTT-AAGTCC
66 TTAAGTACACAACTCTGTGGCA-ACTTTTGAAATCCACAACTCT-GTGGCA-CTTTTTGAAGTCC
* * *
2318864 ACAACTCTACAGCACCTTTTTCCCTTTTAAGTTCACAACTTTATGGCACCTTTTTAAGTTCACAA
128 ACAACTCTACAGCACCTTTTTCCCTTTTAAGTCCACAACTCTATGGCACCTTTTTAAGTCCACAA
**
2318929 CTCCGTGGCACCTTTTTCCTTTATGTCCACAACTCTGTGGCATCCTTCTAAGTCCAC-AACTCCG
193 CTCCGTGGCACCTTTTTCCTTTATGTCCACAACTCCATGGCATCCTTCTAAGTCCACAAACTCCG
* * * * *
2318993 TGGCACACTTTAAAGTCCATGACACAGTGGCATCTCTTGCCCAAGTTCACGGC-TCGATGGCATC
258 TGGCACACTTCAAAGTCCACGACACAGTGACATCTCTTGCCCAAGTCCACGGCAT-AATGGCATC
2319057 CTTTTTCTTCCAAGTCCACGACTCAATGGCATCCATTATCTAAGTCCACAACTTTGTGGCACCTT
322 CTTTTTCTTCCAAGTCCACGACTCAATGGCATCCATTATCTAAGTCCACAACTTTGTGGCACCTT
2319122 TTCCTTT
387 TTCCTTT
* * * *
2319129 TAAGTCCACAACTCCGTGGCATATTTT-CCTTTTAATTCCACAACTTCATGGCACCATTTTTCCC
1 TAAGTCCACAACTCCATGGCAT-TTTTCCCTTGTAAGTCCAAAACTTCATGGCACCATTTTTCCC
* * * *
2319193 TTTAAGTACATAACTCTGTGGTAATTTTTGAAGTCCACAACTCTGTGGCACTTTTTGAAGTCCAC
65 TTTAAGTACACAACTCTGTGGCAACTTTTGAAATCCACAACTCTGTGGCACTTTTTGAAGTCCAC
*** * * *
2319258 AACTCTGTGGCACTTTTTTCCCTTTTAGGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACT
130 AACTCTACAGCACCTTTTTCCCTTTTAAGTCCACAACTCTATGGCACCTTTTTAAGTCCACAACT
* * *
2319323 CCGTGGCACCTTTTTCCTTTATGTCCACAACTCCATGGCATCCTTTTATGTCCACAAACTTCGTG
195 CCGTGGCACCTTTTTCCTTTATGTCCACAACTCCATGGCATCCTTCTAAGTCCACAAACTCCGTG
* * * * ** *
2319388 GCACCCTTCAAAGTCCACGGCTCAGTTACATCTCTTTTCTAAGTCCACGGCATAATGGCATCCTT
260 GCACACTTCAAAGTCCACGACACAGTGACATCTCTTGCCCAAGTCCACGGCATAATGGCATCCTT
2319453 TTTCTTCCAA
325 TTTCTTCCAA
2319463 AAGTCCACAA
Statistics
Matches: 287, Mismatches: 41, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
391 10 0.03
392 202 0.70
393 74 0.26
394 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (393 bp):
TAAGTCCACAACTCCATGGCATTTTTCCCTTGTAAGTCCAAAACTTCATGGCACCATTTTTCCCT
TTAAGTACACAACTCTGTGGCAACTTTTGAAATCCACAACTCTGTGGCACTTTTTGAAGTCCACA
ACTCTACAGCACCTTTTTCCCTTTTAAGTCCACAACTCTATGGCACCTTTTTAAGTCCACAACTC
CGTGGCACCTTTTTCCTTTATGTCCACAACTCCATGGCATCCTTCTAAGTCCACAAACTCCGTGG
CACACTTCAAAGTCCACGACACAGTGACATCTCTTGCCCAAGTCCACGGCATAATGGCATCCTTT
TTCTTCCAAGTCCACGACTCAATGGCATCCATTATCTAAGTCCACAACTTTGTGGCACCTTTTCC
TTT
Found at i:2319316 original size:27 final size:27
Alignment explanation
Indices: 2319280--2319392 Score: 102
Period size: 27 Copynumber: 4.0 Consensus size: 27
2319270 CTTTTTTCCC
* *
2319280 TTTTAGGTCCACAACTCTGTGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCT
2319307 TTTTAAGTCCACAACTCCGTGGCACCTTTT
1 TTTTAAGTCCACAACTCCGTGGCACC---T
* *
2319337 TCCTTTATGTCCACAACTCCATGGCATCC-
1 T--TTTAAGTCCACAACTCCGTGGCA-CCT
* *
2319366 TTTTATGTCCACAAACTTCGTGGCACC
1 TTTTAAGTCCAC-AACTCCGTGGCACC
2319393 CTTCAAAGTC
Statistics
Matches: 73, Mismatches: 6, Indels: 14
0.78 0.06 0.15
Matches are distributed among these distances:
27 37 0.51
28 10 0.14
29 1 0.01
30 2 0.03
32 21 0.29
33 2 0.03
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.34
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCT
Done.