Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold166
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2719372
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 17868 characters in sequence are not A, C, G, or T
File 15 of 18
Found at i:2319377 original size:59 final size:60
Alignment explanation
Indices: 2319225--2319392 Score: 214
Period size: 61 Copynumber: 2.8 Consensus size: 60
2319215 AATTTTTGAA
* * *
2319225 GTCCACAACTCTGTGGCACTTTTTGAAGTCCACAACTCTGTGGCACTTTTTTCCCTTTTAG
1 GTCCACAACTCTGTGGCACCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAG
*
2319286 GTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCTTTTT-CC-TTTAT
1 GTCCACAACTCTGTGGCACC-TTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAG
** * *
2319345 GTCCACAACTCCATGGCATCCTTTTATGTCCACAAACTTCGTGGCACC
1 GTCCACAACTCTGTGGCA-CCTTTTAAGTCCAC-AACTCCGTGGCACC
2319393 CTTCAAAGTC
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
59 31 0.32
60 17 0.18
61 44 0.46
62 4 0.04
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.34
Consensus pattern (60 bp):
GTCCACAACTCTGTGGCACCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCCTTTTAG
Found at i:2319482 original size:35 final size:34
Alignment explanation
Indices: 2319443--2319518 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
2319433 CACGGCATAA
*
2319443 TGGCATCCTTTTTCTTCCAAAAGTCCACAACTTAG
1 TGGCATCCTTTTTC-TCCAAAAGTCCACAACTCAG
* * *
2319478 TGGCACCCTTTTTCTCCCAAAGTCCACGACTCAG
1 TGGCATCCTTTTTCTCCAAAAGTCCACAACTCAG
2319512 TGGCATC
1 TGGCATC
2319519 TCCCCTCTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 23 0.64
35 13 0.36
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.30
Consensus pattern (34 bp):
TGGCATCCTTTTTCTCCAAAAGTCCACAACTCAG
Found at i:2319646 original size:61 final size:59
Alignment explanation
Indices: 2319529--2319659 Score: 190
Period size: 61 Copynumber: 2.2 Consensus size: 59
2319519 TCCCCTCTAC
* * *
2319529 GTCCACAACTCCATGGCACCTTTTCCTTTTAAGTCCATAACTCCATAGCACCATTTTAA
1 GTCCACAACTCCATGACACCTTTTCCTTTTAAGTCCACAACACCATAGCACCATTTTAA
* *
2319588 GTCCACAACTCCATGACACCTTTTTCCCTTTTAAGTCCACAACACCGTGGCACCATTTTAA
1 GTCCACAACTCCATGACACC-TTTT-CCTTTTAAGTCCACAACACCATAGCACCATTTTAA
*
2319649 GTCTACAACTC
1 GTCCACAACTC
2319660 TCAGCTCCTT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 19 0.30
60 4 0.06
61 41 0.64
ACGTcount: A:0.27, C:0.34, G:0.09, T:0.31
Consensus pattern (59 bp):
GTCCACAACTCCATGACACCTTTTCCTTTTAAGTCCACAACACCATAGCACCATTTTAA
Found at i:2319696 original size:26 final size:25
Alignment explanation
Indices: 2319616--2319698 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 25
2319606 CCTTTTTCCC
* *
2319616 TTTTAAGTCCACAACACCGTGGCACCA
1 TTTTAAGT-CACAACTCCGTGGCA-CT
2319643 TTTTAAGTCTACAACTCTCAGCT--C-CT
1 TTTTAAGTC-ACAACTC-C-G-TGGCACT
2319669 TTTTAAGTACACAACTCCGTGGCACT
1 TTTTAAGT-CACAACTCCGTGGCACT
2319695 TTTT
1 TTTT
2319699 TCCCTTTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 2 0.04
26 23 0.50
27 15 0.33
28 2 0.04
29 1 0.02
30 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (25 bp):
TTTTAAGTCACAACTCCGTGGCACT
Found at i:2319746 original size:87 final size:87
Alignment explanation
Indices: 2319582--2319746 Score: 224
Period size: 87 Copynumber: 1.9 Consensus size: 87
2319572 CATAGCACCA
* *
2319582 TTTTAAGTCCACAACTCCATGACACCTTTTTCCCTTTTAAGTCCACAACACCGTGGCACCATTTT
1 TTTTAAGTACACAACTCCATGACACCTTTTTCCCTTTTAAGTCCACAACACCATGGCACCATTTT
*
2319647 AAGTCTACAACTCTCAGCTCCT
66 AACTCTACAACTCTCAGCTCCT
* * * * * *
2319669 TTTTAAGTACACAACTCCGTGGCACTTTTTTCCCTTTTAAGTCCATAACTCCATGGCA-CTTTTT
1 TTTTAAGTACACAACTCCATGACACCTTTTTCCCTTTTAAGTCCACAACACCATGGCACCATTTT
*
2319733 CAACTCTATAACTC
66 -AACTCTACAACTC
2319747 CGCGACACCT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
86 5 0.07
87 62 0.93
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (87 bp):
TTTTAAGTACACAACTCCATGACACCTTTTTCCCTTTTAAGTCCACAACACCATGGCACCATTTT
AACTCTACAACTCTCAGCTCCT
Found at i:2319913 original size:34 final size:33
Alignment explanation
Indices: 2319817--2319950 Score: 105
Period size: 33 Copynumber: 4.0 Consensus size: 33
2319807 GTGGCACCCT
*
2319817 TCAAAGAT-CACGACTTAGTGGTGCCT-TTTTTCTC
1 TCAAA-ATCCACGACTTAGT-G-GCATCTTTTTCTC
* * * * *
2319851 -CCAAGTCCATGATTTAGTGGTATCCTTTTTCT-
1 TCAAAATCCACGACTTAGTGGCAT-CTTTTTCTC
*
2319883 TCAAAAAGTCTACGACTTAGTGGCATCTTTTTCTC
1 TC-AAAA-TCCACGACTTAGTGGCATCTTTTTCTC
*
2319918 TCAAAATCCACGACTCAGTGGCATCTCTTTTCT
1 TCAAAATCCACGACTTAGTGGCATCT-TTTTCT
2319951 AAGTCCACAA
Statistics
Matches: 78, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
31 2 0.03
32 2 0.03
33 38 0.49
34 20 0.26
35 16 0.21
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (33 bp):
TCAAAATCCACGACTTAGTGGCATCTTTTTCTC
Found at i:2319984 original size:424 final size:423
Alignment explanation
Indices: 2319050--2319996 Score: 1056
Period size: 424 Copynumber: 2.2 Consensus size: 423
2319040 CACGGCTCGA
* * *
2319050 TGGCATCCTTTTTCT-TCCAAGTCCACGACTCAATGGCATC-CATTATCTAAGTCCACAACTTTG
1 TGGCAT-CTTTTTCTCTCAAAGTCCACGACTCAGTGGCATCTC-TTATCTAAGTCCACAACTTCG
* * * * *
2319113 TGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCATATTTTCCTTTTAATTCCACAACTTCAT
64 TGGCACCTTTTCCTTTTAAGTCCATAACTCCATAGCA-A---TCCTTTTAAGTCCACAACTCCAT
* * * * * **
2319178 GGCACCATTTTTCCCTTTAAGTACATAACTCTGTGGTAATTTTTGAAGTCCACAACTCTGTGGCA
125 GACACCATTTTTCCCTTTAAGTACACAACACCGTGGCAATTTTTGAAGTCCACAACTCTGCAGCA
* * * **
2319243 CTTTTTGAAGTCCACAACTCTGTGGCACTTTTTTCCCTTTTAGGTCCACAACTCTGTGGCACCTT
190 CTTTTTGAAGTACACAACTCCGTGGCACTTTTTTCCCTTTTAAGTCCACAACTCCATGGCACCTT
* * * * * **
2319308 TTTAAGTCCACAACTCCGTGGCACCTTTTTCCTTTATGTCCACAACTCCATGGCATCCTTTTATG
255 TTTAACTCCACAACTCCGCGACACCTTTTTCCGTTAAGTCCACAACTCCATGGCATCCTTTTAAC
* *
2319373 TCCACAAACTTCGTGGCACCCTTCAAAGTCCACGGCTCAGTTACATCTCTTTTCTAAGTCCACGG
320 TCCACAAACTTCGTGGCACCCTTCAAAGTCCACGACTCAGTTACA-CTCTTTTCTAAGTCCACGA
*
2319438 CATAATGGCATCCTTTTTCTTCCAAAAGTCCACAACTTAG
384 CATAATGGCATCCTTTTTCTTCAAAAAGTCCACAACTTAG
* * *** * * *
2319478 TGGCACCCTTTTTCTCCCAAAGTCCACGACTCAGTGGCATCTCCCCTCTACGTCCACAACTCCAT
1 TGGCA-TCTTTTTCTCTCAAAGTCCACGACTCAGTGGCATCTCTTATCTAAGTCCACAACTTCGT
2319543 GGCACCTTTTCCTTTTAAGTCCATAACTCCATAGC-A-CCATTTTAAGTCCACAACTCCATGACA
65 GGCACCTTTTCCTTTTAAGTCCATAACTCCATAGCAATCC-TTTTAAGTCCACAACTCCATGACA
* * *
2319606 CC-TTTTTCCCTTTTAAGTCCACAACACCGTGGCACCA-TTTT-AAGTCTACAACTCT-CAGCTC
129 CCATTTTTCCC-TTTAAGTACACAACACCGTGGCA--ATTTTTGAAGTCCACAACTCTGCAGC-A
*
2319667 CTTTTT-AAGTACACAACTCCGTGGCACTTTTTTCCCTTTTAAGTCCATAACTCCATGGCA-CTT
190 CTTTTTGAAGTACACAACTCCGTGGCACTTTTTTCCCTTTTAAGTCCACAACTCCATGGCACCTT
* * * ** *
2319730 TTTCAACTCTATAACTCCGCGACACCTTTTTCCGTTAAGTCCATAACTCTGTGGCATTCTTTTAA
255 TTT-AACTCCACAACTCCGCGACACCTTTTTCCGTTAAGTCCACAACTCCATGGCATCCTTTTAA
* * *
2319795 CTCCAC-AACTTCGTGGCACCCTTCAAAGAT-CACGACTTAGTGGTGC-CTTTTTTCTCCCAAGT
319 CTCCACAAACTTCGTGGCACCCTTCAAAG-TCCACGACTCAGT--TACACTCTTTTCT---AAGT
* ** * * * *
2319857 CCATGATTTAGTGGTATCCTTTTTCTTCAAAAAGTCTACGACTTAG
378 CCACGACATAATGGCATCCTTTTTCTTCAAAAAGTCCACAACTTAG
* *
2319903 TGGCATCTTTTTCTCTCAAAATCCACGACTCAGTGGCATCTCTTTTCTAAGTCCACAACTTCGTG
1 TGGCATCTTTTTCTCTCAAAGTCCACGACTCAGTGGCATCTCTTATCTAAGTCCACAACTTCGTG
* * *
2319968 GCACATTTTTCTTTTAAGTCCCTAACTCC
66 GCACCTTTTCCTTTTAAGTCCATAACTCC
2319997 GGGGCACCTT
Statistics
Matches: 434, Mismatches: 70, Indels: 34
0.81 0.13 0.06
Matches are distributed among these distances:
422 45 0.10
423 115 0.26
424 139 0.32
425 50 0.12
426 1 0.00
427 1 0.00
428 13 0.03
429 69 0.16
430 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.35
Consensus pattern (423 bp):
TGGCATCTTTTTCTCTCAAAGTCCACGACTCAGTGGCATCTCTTATCTAAGTCCACAACTTCGTG
GCACCTTTTCCTTTTAAGTCCATAACTCCATAGCAATCCTTTTAAGTCCACAACTCCATGACACC
ATTTTTCCCTTTAAGTACACAACACCGTGGCAATTTTTGAAGTCCACAACTCTGCAGCACTTTTT
GAAGTACACAACTCCGTGGCACTTTTTTCCCTTTTAAGTCCACAACTCCATGGCACCTTTTTAAC
TCCACAACTCCGCGACACCTTTTTCCGTTAAGTCCACAACTCCATGGCATCCTTTTAACTCCACA
AACTTCGTGGCACCCTTCAAAGTCCACGACTCAGTTACACTCTTTTCTAAGTCCACGACATAATG
GCATCCTTTTTCTTCAAAAAGTCCACAACTTAG
Found at i:2319988 original size:32 final size:32
Alignment explanation
Indices: 2319950--2321125 Score: 245
Period size: 27 Copynumber: 38.2 Consensus size: 32
2319940 ATCTCTTTTC
* *
2319950 TAAGTCCACAACTTCGTGGCACATTTTTCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* *
2319982 TAAGTCC-CTAACTCCGGGGCACCTTTTCCTTT
1 TAAGTCCAC-AACTCCGTGGCACCTTTTTCTTT
* *
2320014 TAAGTCCATAACTCCATGGCACC----T-TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
*
2320041 TAAGTCCACAACTCCGTAGCACC----T-TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * *
2320068 TAAGTCCAAAACTTCGTGGCACCCTTTTCGCTTT
1 TAAGTCCACAACTCCGTGGCA-CCTTTT-TCTTT
* *
2320102 TAAGTCCACAACTCTGTGGCACCTTTTTCCTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * *
2320134 TAAGTCCATAACTCCATGGCA-----TCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
** * *
2320161 TAAGTCCACAACTCTATAGCACC-----CTTC
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * ** ** * * *
2320188 AAATTCCAGGACTCAATCGCA--TATCTTC-TC
1 TAAGTCCACAACTCCGTGGCACCT-TTTTCTTT
* * ** ** *
2320218 CAAGTCCACGACTTAGTGGCATTTTTTTTCTTCCA
1 TAAGTCCACAACTCCGTGGCA-CCTTTTTCTT--T
* ** ** * ***
2320253 AAAGTTTACAACTTAGTAGCATCCTTTTTTCCCC
1 TAAGTCCACAACTCCGTGGCA-CC-TTTTTCTTT
* * * *
2320287 AAAGTCCACGACTCAGTGGCATC-TTTTC-TT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* ** * *
2320317 TAAATCCACAAAACCGCGACACCTTTTTCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
** *
2320349 TAAGTCCACAACTCTATGGCA-CTTTCTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTT-TTCTTT
* * * *
2320381 TAAGCCCACAACTCTGTAGCACCTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* *
2320413 TATGTCCACAACTCGGTGGCACC----T-TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* **
2320440 TAAGTTCAC-ACTCTATGGCACCTTTTTTCCCTTT
1 TAAGTCCACAACTCCGTGGCACC-TTTTT--CTTT
* ** *
2320474 TAAGTCCATAACTCTATGGCACC----T-ATT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* *
2320501 TAAGTCCACAACTCTGTGGCACCTTTTTCCTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* *** * *
2320533 TAAGTCCAAAACTTTAT-GCA---ATCT-TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * * *
2320560 TAAGTCTACAACTCAGTGGCATCTCTTATC---
1 TAAGTCCACAACTCCGTGGCACCT-TTTTCTTT
*
2320590 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTT--CTTT
2320624 TAAGTCCACAACTCCGTGGCACC----T-TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * *
2320651 GAAGTCCACAACTCAGTGGCACCTTTTTCCCTGT
1 TAAGTCCACAACTCCGTGGCACCTTTTT--CTTT
* ** *
2320685 TAAGTCCATAACTCTATGGCACATTTTTC---
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * *
2320714 -AA-TACACAACTCCGTGGCACCTTGTTCCTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
** * *
2320744 TAAGTCCACAACTTTGT-G-A---TATCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
*
2320771 TAAGTCCAAAACTCCGTGGCACC-----CTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* ** * * * *
2320798 AAAGTCCACAACTCAATCGCATC-TCTTC-TC
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* ** ** * ** **
2320828 CAAGTCCATGACTTAGTGGTATTGTTTTTCATCCA
1 TAAGTCCACAACTCCGTGGCA-CCTTTTTC-T-TT
* * ** **
2320863 AAAGTCCACAATTTAGTGGCATCCTTTTTCTCCC
1 TAAGTCCACAACTCCGTGGCA-CCTTTTTCT-TT
* * * * * * *
2320897 AAAGTCCACGACTTCGTCGCATC-TCTTC-TC
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * *
2320927 TAAGTCCATAACTCCGTGGCACATTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* *
2320959 TAAGTCTACAACTCCGTGGCACCTTTTCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* **
2320991 TAAGTCTACAACTCCGTAACACC----T-TTT
1 TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
** * *
2321018 TAAGTCTGCAACTCCATGGCACCTTTATCCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTT-T-TCTTT
** *
2321052 TAAGTCCACAACTTTGT-ACACCTTTTTCCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTT--CTTT
* ** *
2321085 TTAGTCCACAACTCTATGGCATCTTTTTCCCTTT
1 TAAGTCCACAACTCCGTGGCACCTTTTT--CTTT
2321119 TAAGTCC
1 TAAGTCC
2321126 TGTCGTAACG
Statistics
Matches: 850, Mismatches: 204, Indels: 178
0.69 0.17 0.14
Matches are distributed among these distances:
26 11 0.01
27 237 0.28
28 10 0.01
29 4 0.00
30 87 0.10
31 31 0.04
32 223 0.26
33 39 0.05
34 149 0.18
35 53 0.06
36 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (32 bp):
TAAGTCCACAACTCCGTGGCACCTTTTTCTTT
Found at i:2320063 original size:59 final size:60
Alignment explanation
Indices: 2319979--2320183 Score: 185
Period size: 59 Copynumber: 3.4 Consensus size: 60
2319969 CACATTTTTC
**
2319979 TTTTAAGTCC-CTAACTCCGGGGCACCTTTTCCTTTTAAGTCCATAACTCCATGGCA-CCT
1 TTTTAAGTCCAC-AACTCCGTAGCACCTTTTCCTTTTAAGTCCATAACTCCATGGCACCCT
* * *
2320038 TTTTAAGTCCACAACTCCGTAGCACC---T--TTTTAAGTCCAAAACTTCGTGGCACCCTTTT
1 TTTTAAGTCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCATAACTCCATGGCACCC---T
* * *
2320096 CGCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCC-TTTAAGTCCATAACTCCATGGCATCC-
1 ---TTTTAAGTCCACAACTCCGTAGCACC-TTTTCCTTTTAAGTCCATAACTCCATGGCACCCT
**
2320158 TTTTAAGTCCACAACTCTATAGCACC
1 TTTTAAGTCCACAACTCCGTAGCACC
2320184 CTTCAAATTC
Statistics
Matches: 119, Mismatches: 13, Indels: 28
0.74 0.08 0.17
Matches are distributed among these distances:
54 21 0.18
55 2 0.02
56 1 0.01
58 1 0.01
59 46 0.39
60 1 0.01
61 24 0.20
65 1 0.01
66 22 0.18
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.34
Consensus pattern (60 bp):
TTTTAAGTCCACAACTCCGTAGCACCTTTTCCTTTTAAGTCCATAACTCCATGGCACCCT
Found at i:2320107 original size:34 final size:33
Alignment explanation
Indices: 2319950--2320161 Score: 123
Period size: 32 Copynumber: 6.8 Consensus size: 33
2319940 ATCTCTTTTC
* * *
2319950 TAAGTCCACAACTTCGTGGCA-CATTTTTCTTT
1 TAAGTCCAAAACTTCGTGGCACCCTTTTCCTTT
** * *
2319982 TAAGTCCCTAACTCCGGGGCA-CCTTTTCCTTT
1 TAAGTCCAAAACTTCGTGGCACCCTTTTCCTTT
* * *
2320014 TAAGTCCATAACTCCATGGCA-CC---T--TTT
1 TAAGTCCAAAACTTCGTGGCACCCTTTTCCTTT
* * *
2320041 TAAGTCCACAACTCCGTAGCA-CC---T--TTT
1 TAAGTCCAAAACTTCGTGGCACCCTTTTCCTTT
2320068 TAAGTCCAAAACTTCGTGGCACCCTTTTCGCTTT
1 TAAGTCCAAAACTTCGTGGCACCCTTTTC-CTTT
* *
2320102 TAAGTCCACAAC-TCTGTGGCACCTTTTTCC-TT
1 TAAGTCCAAAACTTC-GTGGCACCCTTTTCCTTT
* * * *
2320134 TAAGTCCATAACTCCATGGCATCCTTTT
1 TAAGTCCAAAACTTCGTGGCACCCTTTT
2320162 AAGTCCACAA
Statistics
Matches: 149, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
27 45 0.30
28 2 0.01
29 1 0.01
31 1 0.01
32 69 0.46
33 4 0.03
34 27 0.18
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (33 bp):
TAAGTCCAAAACTTCGTGGCACCCTTTTCCTTT
Found at i:2320136 original size:120 final size:119
Alignment explanation
Indices: 2319944--2320183 Score: 344
Period size: 120 Copynumber: 2.0 Consensus size: 119
2319934 AGTGGCATCT
* *
2319944 CTTTTCTAAGTCCACAACTTCGTGGCACATTTTTCTTTTAAGTCCCTAACTCCGGGGCACCTTTT
1 CTTTTCTAAGTCCAAAACTTCGTGGCACATTTTGCTTTTAAGTCCCTAACTCCGGGGCACCTTTT
*
2320009 CCTTTTAAGTCCATAACTCCATGGCA-CCTTTTTAAGTCCACAACTCCGTAGCAC
66 CCTTTTAAGTCCATAACTCCATGGCATCC-TTTTAAGTCCACAACTCCATAGCAC
* * *
2320063 CTTTT-TAAGTCCAAAACTTCGTGGCACCCTTTTCGCTTTTAAGTCCAC-AACTCTGTGGCACCT
1 CTTTTCTAAGTCCAAAACTTCGTGGCA-CATTTT-GCTTTTAAGTCC-CTAACTCCGGGGCACC-
*
2320126 TTTTCC-TTTAAGTCCATAACTCCATGGCATCCTTTTAAGTCCACAACTCTATAGCAC
62 TTTTCCTTTTAAGTCCATAACTCCATGGCATCCTTTTAAGTCCACAACTCCATAGCAC
2320183 C
1 C
2320184 CTTCAAATTC
Statistics
Matches: 109, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
118 20 0.18
119 10 0.09
120 70 0.64
121 9 0.08
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.35
Consensus pattern (119 bp):
CTTTTCTAAGTCCAAAACTTCGTGGCACATTTTGCTTTTAAGTCCCTAACTCCGGGGCACCTTTT
CCTTTTAAGTCCATAACTCCATGGCATCCTTTTAAGTCCACAACTCCATAGCAC
Found at i:2320183 original size:93 final size:87
Alignment explanation
Indices: 2320003--2320186 Score: 201
Period size: 93 Copynumber: 2.0 Consensus size: 87
2319993 CTCCGGGGCA
* *
2320003 CCTTTTCCTTTTAAGTCCATAACTCCATGGCACCTTTTTAAGTCCACAACTCCGTAGCACCTTTT
1 CCTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTTTTAAGTCCACAACTCCATAGCACCTTTT
* *
2320068 TAAGTCCAAAACTTCGTGGCAC
66 TAAGTCCAAAACTTCATAGCAC
** * *
2320090 CCTTTTCGCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCCTTTAAGTCCATAACTCCATGGCA
1 CCTTTTC-CTTTTAAGTCCACAACTCCATGGCACC---TT--TTTAAGTCCACAACTCCATAGCA
*
2320155 TCC-TTTTAAGTCCACAAC-TCTATAGCAC
60 -CCTTTTTAAGTCCAAAACTTC-ATAGCAC
2320183 CCTT
1 CCTT
2320187 CAAATTCCAG
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
87 7 0.09
88 24 0.30
91 2 0.03
92 2 0.03
93 43 0.54
94 2 0.03
ACGTcount: A:0.23, C:0.32, G:0.11, T:0.35
Consensus pattern (87 bp):
CCTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTTTTAAGTCCACAACTCCATAGCACCTTTT
TAAGTCCAAAACTTCATAGCAC
Found at i:2320309 original size:34 final size:34
Alignment explanation
Indices: 2320219--2320313 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
2320209 TATCTTCTCC
*
2320219 AAGTCCACGACTTAGTGGCATTTTTTTTCTTCCAA
1 AAGTCCACGACTTAGTGGCATCTTTTTTC-TCCAA
** * * *
2320254 AAGTTTACAACTTAGTAGCATCCTTTTTTC-CCCA
1 AAGTCCACGACTTAGTGGCAT-CTTTTTTCTCCAA
*
2320288 AAGTCCACGACTCAGTGGCATCTTTT
1 AAGTCCACGACTTAGTGGCATCTTTT
2320314 CTTTAAATCC
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
33 5 0.10
34 19 0.40
35 17 0.35
36 7 0.15
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (34 bp):
AAGTCCACGACTTAGTGGCATCTTTTTTCTCCAA
Found at i:2320449 original size:27 final size:26
Alignment explanation
Indices: 2320410--2320466 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
2320400 CACCTTTTCC
* *
2320410 TTTTATGTCCACAACTCGGTGGCACCT
1 TTTTAAGTCCAC-ACTCGATGGCACCT
* *
2320437 TTTTAAGTTCACACTCTATGGCACCT
1 TTTTAAGTCCACACTCGATGGCACCT
2320463 TTTT
1 TTTT
2320467 TCCCTTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.40
Consensus pattern (26 bp):
TTTTAAGTCCACACTCGATGGCACCT
Found at i:2320505 original size:367 final size:363
Alignment explanation
Indices: 2319846--2320527 Score: 788
Period size: 367 Copynumber: 1.9 Consensus size: 363
2319836 GGTGCCTTTT
* * * * *
2319846 TTCTCCCAAGTCCATGATTTAGTGGTATCCTTTTTCTTCAAAAAGTCTACGACTTAGTGGCATCT
1 TTCTCCCAAGTCCACGACTTAGTGGCATCCTTTTTCTTCAAAAAGTCTACAACTTAGTAGCATCT
* * *** * *
2319911 TTTTCTCTCAAAATCCACGACTCAGTGGCATCTCTTTTCTAAGTCCACAACTTCGTGGCACATTT
66 TTTTCTCCCAAAATCCACGACTCAGTGGCATCTCTTTTCTAAATCCACAAAACCGCGACACATTT
* * * *
2319976 TTCTTTTAAGTCCCTAACTCCGGGGCACCTTTTCCTTTTAAGTCCATAACTCCATGGCACCTTTT
131 TTCTTTTAAGTCCCTAACTCCAGGGCACCTTTTCCTTTTAAGCCCACAACTCCATAGCACCTTTT
* *
2320041 TAAGTCCACAACTCCGTAGCACCTTTTTAAGTCCAAAACTTCGTGGCACCCTTTTCGCTTTTAAG
196 TAAGTCCACAACTCCGTAGCACCTTTTTAAGTCCAAAACTTCATGGCACCCTTTTCCCTTTTAAG
* * *
2320106 TCCACAACTCTGTGGCACCTTTTTCCTTTAAGTCCATAACTCCATGGCATCCTTTTAAGTCCACA
261 TCCACAACTCTATGGCACC---TTCATTTAAGTCCACAACTCCATGGCA-CCTTTTAAGTCCACA
2320171 ACTCTATAGCACCCTTCAAATTCCAGGACTCAATCGCATATC
322 ACTCTATAGCACCCTTCAAATTCCAGGACTCAATCGCATATC
** * *
2320213 TTCT-CCAAGTCCACGACTTAGTGGCATTTTTTTTCTTCCAAAAGTTTACAACTTAGTAGCATCC
1 TTCTCCCAAGTCCACGACTTAGTGGCATCCTTTTTCTTCAAAAAGTCTACAACTTAGTAGCAT-C
* * *
2320277 TTTTT-TCCCCAAAGTCCACGACTCAGTGGCATCT-TTTCTTTAAATCCACAAAACCGCGACACC
65 TTTTTCT-CCCAAAATCCACGACTCAGTGGCATCTCTTT-TCTAAATCCACAAAACCGCGACACA
* * **
2320340 TTTTTCTTTTAAGTCCAC-AACTCTATGGCA-CTTTCTCCTTTTAAGCCCACAACTCTGTAGCAC
128 TTTTTCTTTTAAGTCC-CTAACTCCAGGGCACCTTT-TCCTTTTAAGCCCACAACTCCATAGCAC
* * * * * *
2320403 CTTTTCCTTTTATGTCCACAACTCGGTGGCACCTTTTTAAGTTC-ACAC-TCTATGGCACCTTTT
191 C---T--TTTTAAGTCCACAACTCCGTAGCACCTTTTTAAGTCCAAAACTTC-ATGGCACC-CTT
* **
2320466 TTCCCTTTTAAGTCCATAACTCTATGGCACC-T-ATTTAAGTCCACAACTCTGTGGCACCTTTT
249 TTCCCTTTTAAGTCCACAACTCTATGGCACCTTCATTTAAGTCCACAACTCCATGGCACCTTTT
2320528 TCCTTTAAGT
Statistics
Matches: 262, Mismatches: 41, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
366 63 0.24
367 121 0.46
368 2 0.01
370 3 0.01
371 10 0.04
372 63 0.24
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.35
Consensus pattern (363 bp):
TTCTCCCAAGTCCACGACTTAGTGGCATCCTTTTTCTTCAAAAAGTCTACAACTTAGTAGCATCT
TTTTCTCCCAAAATCCACGACTCAGTGGCATCTCTTTTCTAAATCCACAAAACCGCGACACATTT
TTCTTTTAAGTCCCTAACTCCAGGGCACCTTTTCCTTTTAAGCCCACAACTCCATAGCACCTTTT
TAAGTCCACAACTCCGTAGCACCTTTTTAAGTCCAAAACTTCATGGCACCCTTTTCCCTTTTAAG
TCCACAACTCTATGGCACCTTCATTTAAGTCCACAACTCCATGGCACCTTTTAAGTCCACAACTC
TATAGCACCCTTCAAATTCCAGGACTCAATCGCATATC
Found at i:2320564 original size:59 final size:60
Alignment explanation
Indices: 2320336--2320617 Score: 267
Period size: 59 Copynumber: 4.7 Consensus size: 60
2320326 AAAACCGCGA
* *
2320336 CACCTTTTT-CTTTTAAGTCCACAACTCTATGGCACTTTCTCCTTTTAAGCCCACAACTCTGTAG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTATGGCAC---CT--TTTTAAGTCCACAACTCTGTGG
* ** * *
2320400 CACC-TTTTCCTTTTATGTCCACAACTCGGTGGCACCTTTTTAAGTTCAC-ACTCTATGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTATGGCACCTTTTTAAGTCCACAACTCTGTGG
* *
2320458 CACCTTTTTTCCCTTTTAAGTCCATAACTCTATGGCACCTATTTAAGTCCACAACTCTGTGG
1 CACC-TTTTT-CCTTTTAAGTCCACAACTCTATGGCACCTTTTTAAGTCCACAACTCTGTGG
* * * * *
2320520 CACCTTTTTCC-TTTAAGTCCAAAACTTTAT-GCAATCTTTTTAAGTCTACAACTCAGTGG
1 CACCTTTTTCCTTTTAAGTCCACAACTCTATGGC-ACCTTTTTAAGTCCACAACTCTGTGG
* * *
2320579 CATCTCTTAT-C---TAAGTCCACAACTCTGTGGCACCTTTTT
1 CACCT-TTTTCCTTTTAAGTCCACAACTCTATGGCACCTTTTT
2320618 CCCTTTTAAG
Statistics
Matches: 184, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
57 21 0.11
58 15 0.08
59 54 0.29
60 9 0.05
61 42 0.23
62 12 0.07
63 4 0.02
64 27 0.15
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (60 bp):
CACCTTTTTCCTTTTAAGTCCACAACTCTATGGCACCTTTTTAAGTCCACAACTCTGTGG
Found at i:2320608 original size:89 final size:91
Alignment explanation
Indices: 2320469--2320671 Score: 251
Period size: 91 Copynumber: 2.3 Consensus size: 91
2320459 ACCTTTTTTC
* *
2320469 CCTTTT-AAGTCCATAACTCTA-TGGCA-C-C-TATTTAAGTCCACAACTCTGTGGCACCTTTTT
1 CCTTTTGAAGTCCACAACTC-AGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCTTTTT
**
2320529 -CC-TTTAAGTCCAAAACTTTAT-GCAA
65 CCCTTTTAAGTCCAAAACTCCATGGC-A
* * *
2320554 TCTTTTTAAGTCTACAACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCTTTTTC
1 CCTTTTGAAGTCCACAACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCTTTTTC
* *
2320619 CCTTTTAAGTCCACAACTCCGTGGCA
66 CCTTTTAAGTCCAAAACTCCATGGCA
2320645 CCTTTTGAAGTCCACAACTCAGTGGCA
1 CCTTTTGAAGTCCACAACTCAGTGGCA
2320672 CCTTTTTCCC
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
85 6 0.06
86 16 0.16
87 1 0.01
88 1 0.01
89 31 0.31
90 2 0.02
91 40 0.40
92 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (91 bp):
CCTTTTGAAGTCCACAACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCTTTTTC
CCTTTTAAGTCCAAAACTCCATGGCA
Found at i:2320633 original size:34 final size:34
Alignment explanation
Indices: 2320590--2320713 Score: 136
Period size: 34 Copynumber: 3.9 Consensus size: 34
2320580 ATCTCTTATC
2320590 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTT
1 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTT
*
2320624 TAAGTCCACAACTCCGTGGCACC----T---TTT
1 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTT
* * *
2320651 GAAGTCCACAACTCAGTGGCACCTTTTTCCCTGT
1 TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTT
* * *
2320685 TAAGTCCATAACTCTATGGCACATTTTTC
1 TAAGTCCACAACTCTGTGGCACCTTTTTC
2320714 AATACACAAC
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
27 24 0.32
30 1 0.01
31 1 0.01
34 48 0.65
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.34
Consensus pattern (34 bp):
TAAGTCCACAACTCTGTGGCACCTTTTTCCCTTT
Found at i:2320644 original size:150 final size:149
Alignment explanation
Indices: 2320410--2320736 Score: 414
Period size: 150 Copynumber: 2.2 Consensus size: 149
2320400 CACCTTTTCC
* * * *
2320410 TTTTATGTCCACAACTCGGTGGCACCTTTTTAAGTTCACACTCTATGGCACCTTTTTTCCCTTTT
1 TTTTAAGTCCACAACTCAGTGGCACCTTTCTAAGTCCACACTCTATGGCACCTTTTTTCCCTTTT
* * *
2320475 AAGTCCATAACTCTATGGCACCTATTT-AAGTCCACAACTCTGTGGCACCTTTTT-CCT-TTAAG
66 AAGTCCACAACTCCATGGCACCT-TTTGAAGTCCACAACTCAGTGGCACCTTTTTCCCTGTTAAG
*
2320537 TCCAAAACTTTATGCAATCT
130 TCCAAAACTCTATGCAATCT
* *
2320557 TTTTAAGTCTACAACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACC-TTTTTCCC
1 TTTTAAGTCCACAACTCAGTGGCA-C-CTT-TCTAAGTCCAC-ACTCTATGGCACCTTTTTTCCC
*
2320621 TTTTAAGTCCACAACTCCGTGGCACCTTTTGAAGTCCACAACTCAGTGGCACCTTTTTCCCTGTT
62 TTTTAAGTCCACAACTCCATGGCACCTTTTGAAGTCCACAACTCAGTGGCACCTTTTTCCCTGTT
*
2320686 AAGTCCATAACTCTATGGCACAT-T
127 AAGTCCAAAACTCTAT-GCA-ATCT
* * *
2320710 TTTCAA-TACACAACTCCGTGGCACCTT
1 TTTTAAGTCCACAACTCAGTGGCACCTT
2320737 GTTCCTTTAA
Statistics
Matches: 155, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
147 21 0.14
148 1 0.01
149 6 0.04
150 70 0.45
151 16 0.10
152 30 0.19
153 9 0.06
154 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (149 bp):
TTTTAAGTCCACAACTCAGTGGCACCTTTCTAAGTCCACACTCTATGGCACCTTTTTTCCCTTTT
AAGTCCACAACTCCATGGCACCTTTTGAAGTCCACAACTCAGTGGCACCTTTTTCCCTGTTAAGT
CCAAAACTCTATGCAATCT
Found at i:2320670 original size:61 final size:62
Alignment explanation
Indices: 2320557--2320793 Score: 245
Period size: 61 Copynumber: 3.9 Consensus size: 62
2320547 TATGCAATCT
* * * *
2320557 TTTTAAGTCTACAACTCAGTGGCATCTCTTATCTAAGTCCACAACTCTGTGGCACCTTTTTCCC
1 TTTTAAGTCCACAACTCTGTGGCATCACTT-T-TAAGTCCACAACTCCGTGGCACCTTTTTCCC
* *
2320621 TTTTAAGTCCACAACTCCGTGGCA-C-CTTTTGAAGTCCACAACTCAGTGGCACCTTTTTCCC
1 TTTTAAGTCCACAACTCTGTGGCATCACTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCCC
* * * * * *
2320682 TGTTAAGTCCATAACTCTATGGCA-CATTTTTCAA-TACACAACTCCGTGGCACCTTGTT-CC
1 TTTTAAGTCCACAACTCTGTGGCATCACTTTT-AAGTCCACAACTCCGTGGCACCTTTTTCCC
* ** *
2320742 -TTTAAGTCCACAACTTTGTGATATC-CTTTTAAGTCCAAAACTCCGTGGCACC
1 TTTTAAGTCCACAACTCTGTGGCATCACTTTTAAGTCCACAACTCCGTGGCACC
2320794 CTTTAAAGTC
Statistics
Matches: 148, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
58 2 0.01
59 38 0.26
60 4 0.03
61 72 0.49
62 9 0.06
63 1 0.01
64 22 0.15
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.33
Consensus pattern (62 bp):
TTTTAAGTCCACAACTCTGTGGCATCACTTTTAAGTCCACAACTCCGTGGCACCTTTTTCCC
Found at i:2320724 original size:211 final size:206
Alignment explanation
Indices: 2320376--2320811 Score: 583
Period size: 211 Copynumber: 2.1 Consensus size: 206
2320366 GGCACTTTCT
* * * *
2320376 CCTTTTAAGCCCACAACTCTGTAGCACCTTTTCCTTTTATGTCCACAACTCGGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCTGTAGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTG
* * *
2320441 AAGTTCACACTCTATGGCACCTTTTTTCCCTTTTAAGTCCATAACTCTATGGCACCTATTTAAGT
66 AAGTCCACACTCTATGGCACCTTTTTTCCCTGTTAAGTCCATAACTCTATGGCACATATTTAAGT
* * * * * *
2320506 CCACAACTCTGTGGCACCTTTTTCCTTTAAGTCCAAAACTTTATGCA-ATCTTTTTAAGTCTACA
131 ACACAACTCCGTGGCACCTTGTTCCTTTAAGTCCAAAACTTTATG-ATATCCTTTTAAGTCCAAA
2320570 ACTCAGTGGCATC
195 ACTCAGTGGCA-C
* *
2320583 TCTTATCTAAGTCCACAACTCTGTGGCACCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCT
1 CCTT-T-TAAGTCCACAACTCTGTAGCACC-TTTT-CCTTTTAAGTCCACAACTCCGTGGCACCT
*
2320648 TTTGAAGTCCACAACTC-AGTGGCACC-TTTTTCCCTGTTAAGTCCATAACTCTATGGCACATTT
62 TTTGAAGTCCAC-ACTCTA-TGGCACCTTTTTTCCCTGTTAAGTCCATAACTCTATGGCACATAT
* *
2320711 TTCAA-TACACAACTCCGTGGCACCTTGTTCCTTTAAGTCCACAACTTTGTGATATCCTTTTAAG
125 TT-AAGTACACAACTCCGTGGCACCTTGTTCCTTTAAGTCCAAAACTTTATGATATCCTTTTAAG
*
2320775 TCCAAAACTCCGTGGCAC
189 TCCAAAACTCAGTGGCAC
*
2320793 CCTTTAAAGTCCACAACTC
1 CCTTTTAAGTCCACAACTC
2320812 AATCGCATCT
Statistics
Matches: 200, Mismatches: 21, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
207 3 0.01
208 14 0.07
209 22 0.11
210 9 0.05
211 139 0.69
212 13 0.06
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.35
Consensus pattern (206 bp):
CCTTTTAAGTCCACAACTCTGTAGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTG
AAGTCCACACTCTATGGCACCTTTTTTCCCTGTTAAGTCCATAACTCTATGGCACATATTTAAGT
ACACAACTCCGTGGCACCTTGTTCCTTTAAGTCCAAAACTTTATGATATCCTTTTAAGTCCAAAA
CTCAGTGGCAC
Found at i:2320870 original size:35 final size:34
Alignment explanation
Indices: 2320829--2320919 Score: 92
Period size: 35 Copynumber: 2.6 Consensus size: 34
2320819 TCTCTTCTCC
* * **
2320829 AAGTCCATGACTTAGTGGTATTGTTTTTCATCCAA
1 AAGTCCACGACTTAGTGGCATCCTTTTTC-TCCAA
* * *
2320864 AAGTCCACAATTTAGTGGCATCCTTTTTCTCCCA
1 AAGTCCACGACTTAGTGGCATCCTTTTTCTCCAA
* *
2320898 AAGTCCACGACTTCGTCGCATC
1 AAGTCCACGACTTAGTGGCATC
2320920 TCTTCTCTAA
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
34 22 0.49
35 23 0.51
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.34
Consensus pattern (34 bp):
AAGTCCACGACTTAGTGGCATCCTTTTTCTCCAA
Found at i:2320919 original size:34 final size:35
Alignment explanation
Indices: 2320852--2320919 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 35
2320842 AGTGGTATTG
* *
2320852 TTTTTCATCCAAAAGTCCACAATTTAGTGGCATCC
1 TTTTTCATCCAAAAGTCCACAACTTAGTCGCATCC
* * *
2320887 TTTTTC-TCCCAAAGTCCACGACTTCGTCGCATC
1 TTTTTCATCCAAAAGTCCACAACTTAGTCGCATC
2320920 TCTTCTCTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 22 0.79
35 6 0.21
ACGTcount: A:0.24, C:0.31, G:0.12, T:0.34
Consensus pattern (35 bp):
TTTTTCATCCAAAAGTCCACAACTTAGTCGCATCC
Found at i:2321023 original size:27 final size:29
Alignment explanation
Indices: 2320955--2321032 Score: 88
Period size: 32 Copynumber: 2.7 Consensus size: 29
2320945 GCACATTTTC
**
2320955 CTTTTAAGTCTACAACTCCGTGGCACCTTTT
1 CTTTTAAGTCTACAACTCCGTAACACC--TT
2320986 CCTTTTAAGTCTACAACTCCGTAACACC-T
1 -CTTTTAAGTCTACAACTCCGTAACACCTT
*
2321015 -TTTTAAGTCTGCAACTCC
1 CTTTTAAGTCTACAACTCC
2321033 ATGGCACCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 17 0.40
29 1 0.02
32 25 0.58
ACGTcount: A:0.23, C:0.31, G:0.10, T:0.36
Consensus pattern (29 bp):
CTTTTAAGTCTACAACTCCGTAACACCTT
Found at i:2321030 original size:59 final size:60
Alignment explanation
Indices: 2320956--2321078 Score: 178
Period size: 59 Copynumber: 2.1 Consensus size: 60
2320946 CACATTTTCC
* *
2320956 TTTTAAGTCTACAACTCCGTGGCACCTTT-T-CCTTTTAAGTCTACAACTCCGTAACACCT
1 TTTTAAGTCTACAACTCCATGGCACCTTTATCCCTTTTAAGTCCACAACTCCGT-ACACCT
* **
2321015 TTTTAAGTCTGCAACTCCATGGCACCTTTATCCCTTTTAAGTCCACAACTTTGTACACCT
1 TTTTAAGTCTACAACTCCATGGCACCTTTATCCCTTTTAAGTCCACAACTCCGTACACCT
2321075 TTTT
1 TTTT
2321079 CCCTTTTTAG
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
59 27 0.47
60 11 0.19
61 19 0.33
ACGTcount: A:0.23, C:0.29, G:0.10, T:0.38
Consensus pattern (60 bp):
TTTTAAGTCTACAACTCCATGGCACCTTTATCCCTTTTAAGTCCACAACTCCGTACACCT
Found at i:2321082 original size:33 final size:34
Alignment explanation
Indices: 2321015--2321125 Score: 127
Period size: 34 Copynumber: 3.3 Consensus size: 34
2321005 CGTAACACCT
** * * *
2321015 TTTTAAGTCTGCAACTCCATGGCACCTTTATCCC
1 TTTTAAGTCCACAACTCTATGACACCTTTTTCCC
2321049 TTTTAAGTCCACAACT-T-TGTACACCTTTTTCCC
1 TTTTAAGTCCACAACTCTATG-ACACCTTTTTCCC
* * *
2321082 TTTTTAGTCCACAACTCTATGGCATCTTTTTCCC
1 TTTTAAGTCCACAACTCTATGACACCTTTTTCCC
2321116 TTTTAAGTCC
1 TTTTAAGTCC
2321126 TGTCGTAACG
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
32 2 0.03
33 26 0.40
34 35 0.54
35 2 0.03
ACGTcount: A:0.20, C:0.30, G:0.09, T:0.41
Consensus pattern (34 bp):
TTTTAAGTCCACAACTCTATGACACCTTTTTCCC
Found at i:2324277 original size:52 final size:52
Alignment explanation
Indices: 2324209--2324349 Score: 221
Period size: 52 Copynumber: 2.7 Consensus size: 52
2324199 TGAAAAGTTA
2324209 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGAAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGAAAATTTGC
* * *
2324261 CTGCATGTATCGATACATTTTATACTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGAAAATTTGC
**
2324313 CTGCATGTATCGATACA-AAAATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACA
2324350 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGAAAATTTGC
Found at i:2324356 original size:13 final size:13
Alignment explanation
Indices: 2324338--2324362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2324328 CAAAAATCAG
2324338 TGTATCGATACAA
1 TGTATCGATACAA
2324351 TGTATCGATACA
1 TGTATCGATACA
2324363 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2324446 original size:13 final size:13
Alignment explanation
Indices: 2324428--2324452 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2324418 CAAAAAAATA
2324428 TGTATCGATACAT
1 TGTATCGATACAT
2324441 TGTATCGATACA
1 TGTATCGATACA
2324453 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2324448 original size:33 final size:33
Alignment explanation
Indices: 2324406--2324472 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2324396 AGTAGCTTAA
2324406 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
2324439 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
2324472 A
1 A
2324473 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:2324551 original size:21 final size:21
Alignment explanation
Indices: 2324510--2324551 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
2324500 GTTGGGACCT
*
2324510 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
2324531 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
2324552 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:2325551 original size:49 final size:49
Alignment explanation
Indices: 2325399--2326416 Score: 1439
Period size: 49 Copynumber: 21.0 Consensus size: 49
2325389 TGAGAAAAAG
* * *
2325399 GATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAA
* * *
2325449 AATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--
1 GA--TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
2325495 G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2325543 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
*
2325587 G-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2325635 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2325684 GGTGCTAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2325733 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* *
2325782 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2325831 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2325880 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2325929 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* *
2325978 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2326027 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2326076 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2326125 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* *
2326174 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2326223 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2326272 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* * *
2326321 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
* *
2326370 GGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
2326417 GAAAAGGCCA
Statistics
Matches: 851, Mismatches: 103, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
43 70 0.08
44 5 0.01
45 2 0.00
46 3 0.00
47 1 0.00
48 5 0.01
49 728 0.86
50 2 0.00
51 2 0.00
52 33 0.04
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
Found at i:2326418 original size:98 final size:98
Alignment explanation
Indices: 2325342--2326416 Score: 1841
Period size: 98 Copynumber: 11.0 Consensus size: 98
2325332 AAAAGTGATA
* * * * * *
2325342 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGATGTCAA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G---AAGG-TGCCAA
* * *
2325407 CGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG
60 TGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* *
2325447 AAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTG
1 AAGA--TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
*
2325506 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
2325541 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2325600 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
2325633 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCTAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2325698 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
2325731 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2325796 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
2325829 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2325894 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
2325927 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2325992 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
2326025 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2326090 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
2326123 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2326188 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
2326221 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2326286 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
2326319 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
2326384 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
2326417 GAAAAGGCCA
Statistics
Matches: 942, Mismatches: 20, Indels: 23
0.96 0.02 0.02
Matches are distributed among these distances:
92 128 0.14
94 4 0.00
95 41 0.04
96 5 0.01
98 728 0.77
103 1 0.00
105 3 0.00
107 32 0.03
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (98 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:2326485 original size:33 final size:34
Alignment explanation
Indices: 2326446--2326510 Score: 123
Period size: 33 Copynumber: 1.9 Consensus size: 34
2326436 GGCTTAGAGG
2326446 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAGAA
2326479 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG
1 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG
2326511 GAAAAAAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 26 0.84
34 5 0.16
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.28
Consensus pattern (34 bp):
GGTTGCCACCGACTTGTGTGGGCTTTAGGAAGAA
Found at i:2326582 original size:104 final size:102
Alignment explanation
Indices: 2326495--2327018 Score: 340
Period size: 105 Copynumber: 5.1 Consensus size: 102
2326485 CACCGACTTG
* *
2326495 TGTGGGCTTT-AGGAAGGAAAAAAGA-TGCCACAGAGTTGTGGACTTAAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTGA-AAAGGAAAAAAGAGTGCCACAGAGTTGTGGACTTAAAACGGAAAAAG-GTGC
*
2326558 CACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
64 CACAGAGTTGTGGGCTTTAAAAG--AAAAGTGCCACCGAGT
* * * *
2326599 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACGGAAAAAGGTGCCA
1 TGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAGAGTTGTGGACTTAAAACGGAAAAAGGTGCCA
* **
2326664 CGGAGTTGTGGGCTTTGAAAAAGAAAAAAAGAGTGCCACAAAGT
66 CAGAGTTGTGGGCTTT--AAAAG----AAA-AGTGCCACCGAGT
* * * * *
2326708 TGTGGGCTTT-AAGA-G-AAGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA--GAAGAAGGTTG
1 TGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAGAGTTGTGGAC-TT-AAAACGGAAAAAGG-TG
* * * *
2326767 CCACCGACTTGTGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGT
63 CCACAGA-GT-TGTGGGCTTTA--AA-AGA-AAAG-TGCCACCGAGT
* * * * *
2326814 TGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--GAAAAAAGTGCC
1 TGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAGAGTTGTGGAC-TTAAAACGGAAAAAGGTGCC
* *
2326875 ACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
65 ACAGAGTTGTGGGCTTT-AAAAG-AAAA-GTGCCACCGAGT
* * *
2326916 TGTGGGC-TT--AAACG------G-GTGCCACGGAGTTGTGGACTTAAAA-GGAACAAGGTGCCA
1 TGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAGAGTTGTGGACTTAAAACGGAAAAAGGTGCCA
* * *
2326970 CGGAGTTGTGGGCTTT-AAAGAAAAAATGCCACTGAGT
66 CAGAGTTGTGGGCTTTAAAAG-AAAAGTGCCACCGAGT
* *
2327007 CGTGGACTTTGA
1 TGTGGGCTTTGA
2327019 GACAAAATGC
Statistics
Matches: 358, Mismatches: 35, Indels: 64
0.78 0.08 0.14
Matches are distributed among these distances:
91 15 0.04
92 11 0.03
93 6 0.02
94 45 0.13
95 1 0.00
101 4 0.01
102 23 0.06
103 4 0.01
104 52 0.15
105 66 0.18
106 47 0.13
107 20 0.06
108 42 0.12
109 22 0.06
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (102 bp):
TGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAGAGTTGTGGACTTAAAACGGAAAAAGGTGCCA
CAGAGTTGTGGGCTTTAAAAGAAAAGTGCCACCGAGT
Found at i:2326584 original size:34 final size:34
Alignment explanation
Indices: 2326495--2327016 Score: 485
Period size: 33 Copynumber: 15.3 Consensus size: 34
2326485 CACCGACTTG
* *
2326495 TGTGGGCTTTAGGAAGGAAAAA-AGATGCCACAGAGT
1 TGTGGGCTTTA--AAAGAAAAAGAG-TGCCACGGAGT
* *
2326531 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAA--GAAAAAGAGTGCCACGGAGT
2326566 TGTGGGCTTTAAAAGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGAAAAAGAGTGCCACGGAGT
2326599 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA--GAAAAAGAGTGCCACGGAGT
*
2326636 TGTGGGCTTTAAACGGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGAAAAAGAGTGCCACGGAGT
**
2326670 TGTGGGCTTTGAAAAAGAAAAAAAGAGTGCCACAAAGT
1 TGTGGGCTTT--AAAAG--AAAAAGAGTGCCACGGAGT
* *
2326708 TGTGGGCTTTAAGAGAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGAAAAAGAGTGCCACGGAGT
* * *
2326741 TGTGGGCTTTGAAAAGAAGAAG-GTTGCCACCGACTT
1 TGTGGGCTTT-AAAAGAAAAAGAG-TGCCACGGA-GT
* *
2326777 GTGTGGGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGT
1 -TGTGGGCTTTA--AA-AGAAAAAGAGTGCCACGGAGT
*
2326814 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA--GAAAAAGAGTGCCACGGAGT
2326849 TGTGGGCTTTAAAAGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGAAAAAGAGTGCCACGGAGT
2326882 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTT-AAAAGAAAAAGAGTGCCACGGAGT
*
2326916 TGTGGGC-TTAAACG-----G-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGAAAAAGAGTGCCACGGAGT
* *
2326943 TGTGGAC-TTAAAAGGAACAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAA-GAAAAAGAGTGCCACGGAGT
*
2326976 TGTGGGCTTT-AAAGAAAAA-A-TGCCACTGAGT
1 TGTGGGCTTTAAAAGAAAAAGAGTGCCACGGAGT
* *
2327007 CGTGGACTTT
1 TGTGGGCTTT
2327017 GAGACAAAAT
Statistics
Matches: 418, Mismatches: 32, Indels: 77
0.79 0.06 0.15
Matches are distributed among these distances:
27 24 0.06
28 1 0.00
31 18 0.04
32 9 0.02
33 93 0.22
34 92 0.22
35 62 0.15
36 44 0.11
37 40 0.10
38 30 0.07
39 5 0.01
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (34 bp):
TGTGGGCTTTAAAAGAAAAAGAGTGCCACGGAGT
Found at i:2326941 original size:27 final size:27
Alignment explanation
Indices: 2326903--2326954 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
2326893 AAAAGAAAAA
*
2326903 GGTGCCACGGAGTTGTGGGCTTAAACG
1 GGTGCCACGGAGTTGTGGACTTAAACG
2326930 GGTGCCACGGAGTTGTGGACTTAAA
1 GGTGCCACGGAGTTGTGGACTTAAA
2326955 AGGAACAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.38, T:0.23
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTAAACG
Found at i:2326971 original size:60 final size:61
Alignment explanation
Indices: 2326803--2326991 Score: 245
Period size: 60 Copynumber: 3.0 Consensus size: 61
2326793 GGGAGAAAGA
2326803 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAA
1 TGCCACGGAGTTGTGGACTTAAAA-GGAAAAAG-GTGCCACGGAGTTGTGGGC-TTAAAAG----
2326868 AAG
59 AAG
* * * *
2326871 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTAAACG-GG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAG
* *
2326932 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTAAAGAA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAA
2326992 AAAATGCCAC
Statistics
Matches: 109, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
60 36 0.33
61 18 0.17
66 6 0.06
67 19 0.17
68 24 0.22
69 6 0.06
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.21
Consensus pattern (61 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAG
Found at i:2327027 original size:30 final size:31
Alignment explanation
Indices: 2326932--2327049 Score: 121
Period size: 30 Copynumber: 3.8 Consensus size: 31
2326922 CTTAAACGGG
* * * **
2326932 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACTGAGTCGTGGACTTTAAA-GAA-AAAA
* * *
2326965 TGCCACGGAGTTGTGGGCTTTAAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
* *
2326996 TGCCACTGAGTCGTGGACTTT-GAGACAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
2327026 TGCCACTGAGTCGTGGACTTTAAA
1 TGCCACTGAGTCGTGGACTTTAAA
2327050 AAGGTATTTG
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
30 28 0.38
31 21 0.28
32 3 0.04
33 22 0.30
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTAAAGAAAAAA
Found at i:2327808 original size:30 final size:30
Alignment explanation
Indices: 2327772--2327887 Score: 128
Period size: 30 Copynumber: 3.8 Consensus size: 30
2327762 AGGCCCTTCA
*
2327772 AAGTCCACGACTCAGTGGCATCTCTACTCT
1 AAGTCCACAACTCAGTGGCATCTCTACTCT
* * *
2327802 AAGTCCACAACTCAGTGGCATCTTTTTTCTTCC
1 AAGTCCACAACTCAGTGGCATC--TCTAC-TCT
*
2327835 AAGTCCACGACTCAGTGGCATCTCTTA-TCT
1 AAGTCCACAACTCAGTGGCATCTC-TACTCT
2327865 AAGTCCACAACTCCA-TGGCATCT
1 AAGTCCACAACT-CAGTGGCATCT
2327888 ATTCCTTTTA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
30 42 0.58
31 3 0.04
32 4 0.06
33 23 0.32
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (30 bp):
AAGTCCACAACTCAGTGGCATCTCTACTCT
Found at i:2327871 original size:63 final size:63
Alignment explanation
Indices: 2327767--2327887 Score: 201
Period size: 63 Copynumber: 1.9 Consensus size: 63
2327757 CTCCAAGGCC
2327767 CTTCAAAGTCCACGACTCAGTGGCATCTCTACTCTAAGTCCACAACT-CAGTGGCATCTTTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTCTACTCTAAGTCCACAACTCCA-TGGCATCTTTTTT
*
2327830 CTTCCAAGTCCACGACTCAGTGGCATCTCTTA-TCTAAGTCCACAACTCCATGGCATCT
1 CTTCAAAGTCCACGACTCAGTGGCATCTC-TACTCTAAGTCCACAACTCCATGGCATCT
2327888 ATTCCTTTTA
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
63 51 0.93
64 4 0.07
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (63 bp):
CTTCAAAGTCCACGACTCAGTGGCATCTCTACTCTAAGTCCACAACTCCATGGCATCTTTTTT
Found at i:2327962 original size:34 final size:34
Alignment explanation
Indices: 2327864--2327986 Score: 132
Period size: 32 Copynumber: 3.7 Consensus size: 34
2327854 ATCTCTTATC
* * *
2327864 TAAGTCCACAACTCCATGGCA--TCTATTCCTTT
1 TAAGTCAACAACTCCATGGCACCTTTTTTCCTTT
**
2327896 TAAGTCCAA-AACTCTGTGGCACC--TTTTCCTTT
1 TAAGT-CAACAACTCCATGGCACCTTTTTTCCTTT
*
2327928 TAAGTCAATAACTCCATGGCACCTTTTTTCCTTT
1 TAAGTCAACAACTCCATGGCACCTTTTTTCCTTT
2327962 TAAGT-ACACAACTCCATGGCACCTT
1 TAAGTCA-ACAACTCCATGGCACCTT
2327987 ATTAAGTCCA
Statistics
Matches: 77, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
31 3 0.04
32 40 0.52
33 3 0.04
34 31 0.40
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (34 bp):
TAAGTCAACAACTCCATGGCACCTTTTTTCCTTT
Found at i:2327998 original size:27 final size:26
Alignment explanation
Indices: 2327957--2328103 Score: 141
Period size: 27 Copynumber: 5.2 Consensus size: 26
2327947 CACCTTTTTT
*
2327957 CCTTTTAAGTACACAACTCCATGGCA
1 CCTTTTAAGTCCACAACTCCATGGCA
**
2327983 CCTTATTAAGTCCACAACTCCGCGGCA
1 CCTT-TTAAGTCCACAACTCCATGGCA
2328010 CCTTTTTAAGTCCACAACTCTGTAGCACCTGGCA
1 CC-TTTTAAGTCCACAACTC-----CA--TGGCA
* **
2328044 CCTTTTTAAGTCCATAACTCTGTGGCA
1 CC-TTTTAAGTCCACAACTCCATGGCA
2328071 CCTTTCTAAGTCCACAACTCCATGGCA
1 CCTTT-TAAGTCCACAACTCCATGGCA
2328098 CCTTTT
1 CCTTTT
2328104 TCCTTTAAGT
Statistics
Matches: 100, Mismatches: 11, Indels: 20
0.76 0.08 0.15
Matches are distributed among these distances:
26 8 0.08
27 66 0.66
28 2 0.02
32 1 0.01
34 23 0.23
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (26 bp):
CCTTTTAAGTCCACAACTCCATGGCA
Found at i:2328049 original size:34 final size:34
Alignment explanation
Indices: 2328006--2328073 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
2327996 ACAACTCCGC
2328006 GGCACCTTTTTAAGTCCACAACTCTGTAGCACCT
1 GGCACCTTTTTAAGTCCACAACTCTGTAGCACCT
* *
2328040 GGCACCTTTTTAAGTCCATAACTCTGTGGCACCT
1 GGCACCTTTTTAAGTCCACAACTCTGTAGCACCT
2328074 TTCTAAGTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (34 bp):
GGCACCTTTTTAAGTCCACAACTCTGTAGCACCT
Found at i:2328109 original size:61 final size:61
Alignment explanation
Indices: 2327978--2328131 Score: 177
Period size: 61 Copynumber: 2.6 Consensus size: 61
2327968 CACAACTCCA
* * * * **
2327978 TGGCACCTTATTAAGTCCACAACTCCGCGGCACCTTTTTAAGTCCACAACTCTGTAGCACC
1 TGGCACCTTTTTAAGTCCATAACTCCGTGGCACCTTTCTAAGTCCACAACTCCATAGCACC
* *
2328039 TGGCACCTTTTTAAGTCCATAACTCTGTGGCACCTTTCTAAGTCCACAACTCCATGGCACC
1 TGGCACCTTTTTAAGTCCATAACTCCGTGGCACCTTTCTAAGTCCACAACTCCATAGCACC
**** *
2328100 TTTTTCC--TTTAAGTCCATAACTCCATGGCACC
1 TGGCACCTTTTTAAGTCCATAACTCCGTGGCACC
2328132 CTTTTTCCTT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
59 23 0.29
61 56 0.71
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (61 bp):
TGGCACCTTTTTAAGTCCATAACTCCGTGGCACCTTTCTAAGTCCACAACTCCATAGCACC
Found at i:2328113 original size:32 final size:33
Alignment explanation
Indices: 2328071--2328665 Score: 156
Period size: 27 Copynumber: 19.0 Consensus size: 33
2328061 CTCTGTGGCA
2328071 CCTTTCTAAGTCCACAACTCCATGGCACCTTTTT
1 CCTTT-TAAGTCCACAACTCCATGGCACCTTTTT
*
2328105 CC-TTTAAGTCCATAACTCCATGGCACCCTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCA-CCTTTTT
* * **
2328138 CCTTTTAAGTCTACATCTCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* * * *
2328171 CCCTTTTAAGTCTACAACTTCGTGGTACCTTTTTAAGTCTTTTT
1 -CCTTTTAAGTCCACAACTCCATGG---C------A-CCTTTTT
* * * * *
2328215 CCCTTTCAAGTCTACAACTTCGTGACACC----T
1 -CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* * *
2328245 --TTTTAAGACTACAACTCCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
*** *
2328276 CC-TTTAAGTTTGCAACTCCGTGGCA-----TT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* **
2328303 -CTTTTAAGTCCATAACTTAATGGCA-C-----
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
** * ** *
2328329 CCTTCAAAGTCTAGGACTCAATGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* **
2328362 CC-TTTAAGTCGACAACTCTGTGGCA------T
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
2328388 CCTTTTAAGTCCACAACTCCATGGCA-C-----
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
** * * *
2328415 CCTTCAAAGTCCACGACTCAATGGCATC-TTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* * *
2328447 -C-TCTAAGTCCACGACT-CAGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCA-TGGCACCTTTTT
* ** * * * *
2328478 TCTTCCAAGTCCACGACTCAATGGCATCTCTTAT
1 CCTTTTAAGTCCACAACTCCATGGCACCT-TTTT
* *
2328512 -C---TAAGTCCA-AAATCCGTGGCACC-TTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* * **
2328539 CCTTTTAAGTCCAAAACTCCGTGGTGCC-TTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* **
2328571 CCTTTTAAGTTCACAACTCTGTGGCACCCTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCA-CCTTTTT
2328605 CCTTTTAAGTCCACAACTCCATGGCA-C-----
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
* *
2328632 CCTTTTAAGTCCACAACTCTATAGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
2328665 C
1 C
2328666 AGTCCACAAC
Statistics
Matches: 435, Mismatches: 72, Indels: 109
0.71 0.12 0.18
Matches are distributed among these distances:
26 4 0.01
27 128 0.29
28 4 0.01
29 10 0.02
30 29 0.07
31 14 0.03
32 94 0.22
33 46 0.11
34 73 0.17
35 1 0.00
37 1 0.00
41 1 0.00
43 1 0.00
44 29 0.07
ACGTcount: A:0.22, C:0.30, G:0.12, T:0.36
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCATGGCACCTTTTT
Found at i:2328168 original size:33 final size:33
Alignment explanation
Indices: 2328071--2328204 Score: 137
Period size: 34 Copynumber: 4.0 Consensus size: 33
2328061 CTCTGTGGCA
* **
2328071 CCTTTCTAAGTCCACAACTCCATGGCACCTTTTT
1 CCTTT-TAAGTCTACAACTCTGTGGCACCTTTTT
* * **
2328105 CC-TTTAAGTCCATAACTCCATGGCACCCTTTTT
1 CCTTTTAAGTCTACAACTCTGTGGCA-CCTTTTT
*
2328138 CCTTTTAAGTCTACATCTCTGTGGCACCTTTTT
1 CCTTTTAAGTCTACAACTCTGTGGCACCTTTTT
*
2328171 CCCTTTTAAGTCTACAACT-TCGTGGTACCTTTTT
1 -CCTTTTAAGTCTACAACTCT-GTGGCACCTTTTT
2328205 AAGTCTTTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
32 20 0.23
33 19 0.22
34 49 0.56
ACGTcount: A:0.19, C:0.31, G:0.10, T:0.40
Consensus pattern (33 bp):
CCTTTTAAGTCTACAACTCTGTGGCACCTTTTT
Found at i:2328215 original size:44 final size:44
Alignment explanation
Indices: 2328165--2328251 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
2328155 TCTGTGGCAC
* **
2328165 CTTTTTCCCTTTTAAGTCTACAACTTCGTGGTACCTTTTTAAGT
1 CTTTTTCCCTTTCAAGTCTACAACTTCGTGACACCTTTTTAAGT
2328209 CTTTTTCCCTTTCAAGTCTACAACTTCGTGACACCTTTTTAAG
1 CTTTTTCCCTTTCAAGTCTACAACTTCGTGACACCTTTTTAAG
2328252 ACTACAACTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.45
Consensus pattern (44 bp):
CTTTTTCCCTTTCAAGTCTACAACTTCGTGACACCTTTTTAAGT
Found at i:2328378 original size:86 final size:86
Alignment explanation
Indices: 2328264--2328476 Score: 272
Period size: 86 Copynumber: 2.5 Consensus size: 86
2328254 TACAACTCCG
* * * *
2328264 TGGCACCTTTTTCCTTTAAGTTTG-CAACTCCGTGGCATTCTTTTAAGTCCATAACTTAATGGCA
1 TGGCACCTTTTTCCTTTAAG-TCGACAACTCAGTGGCATTCTTTTAAGTCCACAACTCAATGGCA
* *
2328328 CCCTTCAAAGTCTAGGACTCAA
65 CCCTTCAAAGTCCACGACTCAA
* * *
2328350 TGGCACCTTTTTCCTTTAAGTCGACAACTCTGTGGCATCCTTTTAAGTCCACAACTCCATGGCAC
1 TGGCACCTTTTTCCTTTAAGTCGACAACTCAGTGGCATTCTTTTAAGTCCACAACTCAATGGCAC
2328415 CCTTCAAAGTCCACGACTCAA
66 CCTTCAAAGTCCACGACTCAA
* * * *
2328436 TGGCATC-TTTT-CTCTAAGTCCACGACTCAGTGGCA-TCTTTT
1 TGGCACCTTTTTCCTTTAAGTCGACAACTCAGTGGCATTCTTTT
2328477 TTCTTCCAAG
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
83 5 0.04
84 20 0.18
85 6 0.05
86 81 0.72
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (86 bp):
TGGCACCTTTTTCCTTTAAGTCGACAACTCAGTGGCATTCTTTTAAGTCCACAACTCAATGGCAC
CCTTCAAAGTCCACGACTCAA
Found at i:2328412 original size:27 final size:27
Alignment explanation
Indices: 2328364--2329255 Score: 209
Period size: 27 Copynumber: 29.9 Consensus size: 27
2328354 ACCTTTTTCC
* *
2328364 TTTAAGTCGACAACTCTGTGGCATCCT
1 TTTAAGTCCACAACTCCGTGGCATCCT
* *
2328391 TTTAAGTCCACAACTCCATGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCATCCT
** * ** *
2328418 TCAAAGTCCACGACTCAATGGCATCTTT
1 TTTAAGTCCACAACTCCGTGGCATC-CT
* * *
2328446 TCTCTAAGTCCACGACTCAGTGGCATCTTTTT
1 T-T-TAAGTCCACAACTCCGTGGCATC---CT
* **
2328478 TCTTCCAAGTCCACGACTCAATGGCATCTCT
1 T-TT--AAGTCCACAACTCCGTGGCATC-CT
*
2328509 TATCTAAGTCCA-AAATCCGTGGCACCTTTTCCT
1 T-T-TAAGTCCACAACTCCGTGGCA-----TCCT
* *
2328542 TTTAAGTCCAAAACTCCGTGGTGCCTTTTCCT
1 TTTAAGTCCACAACTCCGT-G-G-C--ATCCT
* *
2328574 TTTAAGTTCACAACTCTGTGGCACCCTTTTTCCT
1 TTTAAGTCCACAACTCCGTGGCA-------TCCT
* *
2328608 TTTAAGTCCACAACTCCATGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCATCCT
** *
2328635 TTTAAGTCCACAACTCTATAGCA-CCTT
1 TTTAAGTCCACAACTCCGTGGCATCC-T
* * *
2328662 TTTCAGTCCACAACTCTGTAGCACCTGGCACCTT
1 TTTAAGTCCACAACTCCGTGGCA--T----CC-T
* *
2328696 TTTAAGTTCACAACTCTGTGGCA-CCTT
1 TTTAAGTCCACAACTCCGTGGCATCC-T
* * *
2328723 TTTAAGTCTACAACTTCGTGGTA-CCTTTTT
1 TTTAAGTCCACAACTCCGTGGCATCC----T
* *
2328753 GCTTTAAGTCCATAACTCTGTGGCAT-CT
1 --TTTAAGTCCACAACTCCGTGGCATCCT
2328781 TTTAAGTCCACAACTCCGTGGCATCCT
1 TTTAAGTCCACAACTCCGTGGCATCCT
* *
2328808 TTTAAGTCCACAATTCCGTGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCATCCT
** * *
2328835 TCAAAGTCCACGACTCAGTGGCA-CCATTTT
1 TTTAAGTCCACAACTCCGTGGCATCC----T
** *
2328865 CCTTTAAGTCCACAACTTTGTGGTAT-CT
1 --TTTAAGTCCACAACTCCGTGGCATCCT
* ** **
2328893 TTCAATGTCCATGACTTAGTGGCATCTCT
1 TTTAA-GTCCACAACTCCGTGGCATC-CT
* *
2328922 TCTCCAAGTCCACGACTCCGTGGCATCCTTTTT
1 T-T-TAAGTCCACAACTCCGTGGCATCC----T
* **
2328955 CTTCTAAGTCCACGACTTAGTGGCATCTCT
1 -TT-TAAGTCCACAACTCCGTGGCATC-CT
* * *
2328985 TCTCTAAGTCCAAAACTTCATGGCATCTTTTTCT
1 T-T-TAAGTCCACAACTCCGTGGCATC-----CT
*
2329019 TTTAAGTCCACAACTCCATGGCACTTTTTCCT
1 TTTAAGTCCACAACTCCGTGGCA-----TCCT
* *
2329051 TTTAAATCCACAACTCCGTGGCACCTTTTTTCT
1 TTTAAGTCCACAACTCCGTGGCA------TCCT
* *
2329084 TTTAAGTCCACATCTCTGTGGCATCTTTTTCCCT
1 TTTAAGTCCACAACTCCGTGGCA------T-CCT
* * * *
2329118 TTTAAGTCTATAACTTCGTTGCA-CCTT
1 TTTAAGTCCACAACTCCGTGGCATCC-T
* *
2329145 TTTATGTCCATAACTCCGTGGCA-CCGTTTT
1 TTTAAGTCCACAACTCCGTGGCATCC----T
*
2329175 CCTTTAAGTCCCCAACTCCGTGGCATCCT
1 --TTTAAGTCCACAACTCCGTGGCATCCT
* * *
2329204 TTTAAGTCCATAACTCCGTAGCACCCT
1 TTTAAGTCCACAACTCCGTGGCATCCT
* *
2329231 TTAAAGTCCACAACTCAGTGGCATC
1 TTTAAGTCCACAACTCCGTGGCATC
2329256 ATTTCTCCAA
Statistics
Matches: 678, Mismatches: 109, Indels: 156
0.72 0.12 0.17
Matches are distributed among these distances:
26 32 0.05
27 238 0.35
28 4 0.01
29 15 0.02
30 74 0.11
31 17 0.03
32 134 0.20
33 85 0.13
34 76 0.11
35 1 0.00
37 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.35
Consensus pattern (27 bp):
TTTAAGTCCACAACTCCGTGGCATCCT
Found at i:2328457 original size:30 final size:30
Alignment explanation
Indices: 2328421--2328520 Score: 137
Period size: 30 Copynumber: 3.2 Consensus size: 30
2328411 GCACCCTTCA
2328421 AAGTCCACGACTCAATGGCATCTTTTCTCT
1 AAGTCCACGACTCAATGGCATCTTTTCTCT
* *
2328451 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCC
1 AAGTCCACGACTCAATGGCATC--TTTTC-TCT
* *
2328484 AAGTCCACGACTCAATGGCATCTCTTATCT
1 AAGTCCACGACTCAATGGCATCTTTTCTCT
2328514 AAGTCCA
1 AAGTCCA
2328521 AAATCCGTGG
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
30 30 0.49
31 3 0.05
32 5 0.08
33 23 0.38
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (30 bp):
AAGTCCACGACTCAATGGCATCTTTTCTCT
Found at i:2328698 original size:34 final size:34
Alignment explanation
Indices: 2328655--2328721 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
2328645 CAACTCTATA
*
2328655 GCACCTTTTTCAGTCCACAACTCTGTAGCACCTG
1 GCACCTTTTTAAGTCCACAACTCTGTAGCACCTG
* *
2328689 GCACCTTTTTAAGTTCACAACTCTGTGGCACCT
1 GCACCTTTTTAAGTCCACAACTCTGTAGCACCT
2328722 TTTTAAGTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (34 bp):
GCACCTTTTTAAGTCCACAACTCTGTAGCACCTG
Found at i:2328774 original size:59 final size:59
Alignment explanation
Indices: 2328696--2329511 Score: 193
Period size: 59 Copynumber: 13.5 Consensus size: 59
2328686 CTGGCACCTT
* * * *
2328696 TTTAAGTTCACAACTCTGTGGCACCTTTTTAAGTCTACAACTTCGTGGTA-CCTTTTTGC
1 TTTAAGTCCACAACTCTGTGGCACC-TTTTAAGTCCACAACTCCGTGGCATCCTTTTTGC
* *
2328755 TTTAAGTCCATAACTCTGTGGCATCTTTTAAGTCCACAACTCCGTGGCATCC----T--
1 TTTAAGTCCACAACTCTGTGGCACCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTGC
* * ** * * * *
2328808 TTTAAGTCCACAATTCCGTGGCACCCTTCAAAGTCCACGACTCAGTGGCA-CCATTTTCC
1 TTTAAGTCCACAACTCTGTGGCA-CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTGC
* * * * ** ** *
2328867 TTTAAGTCCACAACTTTGTGGTATCTTTCAATGTCCATGACTTAGTGGCAT-C-TCTT-C
1 TTTAAGTCCACAACTCTGTGGCACCTTTTAA-GTCCACAACTCCGTGGCATCCTTTTTGC
** * * * ** *
2328924 TCCAAGTCCACGACTCCGTGGCATCCTTTTTCTTCTAAGTCCACGACTTAGTGGCAT-C-TCTT-
1 TTTAAGTCCACAACTCTGTGGCA-CC----T-TT-TAAGTCCACAACTCCGTGGCATCCTTTTTG
2328986 C
59 C
* * * * *
2328987 TCTAAGTCCAAAACT-TCATGGCATCTTTTTCTTTTAAGTCCACAACTCCATGGCA--CTTTTTC
1 TTTAAGTCCACAACTCT-GTGGCA-C-----CTTTTAAGTCCACAACTCCGTGGCATCCTTTTTG
2329049 C
59 C
* * * *
2329050 TTTTAAATCCACAACTCCGTGGCACCTTTTTTCTTTTAAGTCCACATCTCTGTGGCAT-CTTTTT
1 -TTTAAGTCCACAACTCTGTGGCA-C------CTTTTAAGTCCACAACTCCGTGGCATCCTTTTT
*
2329114 CCC
58 -GC
* * * * * * *
2329117 TTTTAAGTCTATAACT-TCGTTGCACCTTTTTATGTCCATAACTCCGTGGCA-CCGTTTTCC
1 -TTTAAGTCCACAACTCT-GTGGCACC-TTTTAAGTCCACAACTCCGTGGCATCCTTTTTGC
* * * *
2329177 TTTAAGTCCCCAACTCCGTGGCATCCTTTTAAGTCCATAACTCCGTAGCA-CC------C
1 TTTAAGTCCACAACTCTGTGGCA-CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTGC
* * * ** *
2329230 TTTAAAGTCCACAACTCAGTGGCATCATTTCTCCAAGTCCACGACTTAGTGGCAT-CTTTTTTC
1 TTT-AAGTCCACAACTCTGTGGCA-CCTTT-T--AAGTCCACAACTCCGTGGCATCCTTTTTGC
* * * ** * ** * *
2329293 TTCCAAGTCCACGACTCAGCAGCATCTCTTCTCTAAGTCTACAACTTTGTGGTA-CC-TTTTCC
1 TT-TAAGTCCACAACTCTGTGGCA-C-CTT-T-TAAGTCCACAACTCCGTGGCATCCTTTTTGC
* * ** * *
2329355 TTTTAAGTCCACAACTCCGTGGCATCTTTTCCTTTTAAGTCCATAACTTTGTGGCACCCTTTTTC
1 -TTTAAGTCCACAACTCTGTGGCA------CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTG
2329420 C
59 C
* * * * *
2329421 TTTTAAGTTCACAATTCCGTGGCACTCTTTTAAGTCCACCACTCCATGGCACGTCCTTTTT--
1 -TTTAAGTCCACAACTCTGTGGCAC-CTTTTAAGTCCACAACTCCGTGGCA--TCCTTTTTGC
* * * *
2329482 TTCAAAGGCCACAACTCCGTGGCATCTTTT
1 TT-TAAGTCCACAACTCTGTGGCACCTTTT
2329512 CCCTTTAAGT
Statistics
Matches: 587, Mismatches: 108, Indels: 123
0.72 0.13 0.15
Matches are distributed among these distances:
53 26 0.04
54 44 0.07
55 2 0.00
57 35 0.06
58 30 0.05
59 101 0.17
60 13 0.02
61 63 0.11
62 42 0.07
63 96 0.16
64 41 0.07
65 33 0.06
66 38 0.06
67 22 0.04
68 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (59 bp):
TTTAAGTCCACAACTCTGTGGCACCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTGC
Found at i:2328820 original size:112 final size:113
Alignment explanation
Indices: 2328687--2328954 Score: 272
Period size: 112 Copynumber: 2.3 Consensus size: 113
2328677 CTGTAGCACC
* * * * *
2328687 TGGCA-CCTTTTTAAGTTCACAACTCTGTGGCACCTTTTTAAGTCTACAACTTC-GTGGTACCTT
1 TGGCATCC-TTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAAC-TCAGTGGCACCAT
* * * *
2328750 TTTGCTTTAAGTCCATAACTCTGTGGCATCTTTTAA-GTCCACAACTCCG
64 TTTCCTTTAAGTCCACAACTCTGTGGCATCTTTCAATGTCCACAACTCAG
* * ** *
2328799 TGGCATCCTTTTAAGTCCACAATTCCGTGGCACCCTTCAAAGTCCACGACTCAGTGGCACCATTT
1 TGGCATCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCAGTGGCACCATTT
* * ** *
2328864 TCCTTTAAGTCCACAACTTTGTGGTATCTTTCAATGTCCATGACTTAG
66 TCCTTTAAGTCCACAACTCTGTGGCATCTTTCAATGTCCACAACTCAG
* *
2328912 TGGCATCTCTTCTCCAAGTCCACGACTCCGTGGCATCCTTTTT
1 TGGCATC-CTT-T-TAAGTCCACAACTCCGTGGCA-CCTTTTT
2328955 CTTCTAAGTC
Statistics
Matches: 124, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
111 2 0.02
112 78 0.63
113 18 0.15
114 3 0.02
115 1 0.01
116 18 0.15
117 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (113 bp):
TGGCATCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCAGTGGCACCATTT
TCCTTTAAGTCCACAACTCTGTGGCATCTTTCAATGTCCACAACTCAG
Found at i:2328903 original size:86 final size:88
Alignment explanation
Indices: 2328781--2328982 Score: 207
Period size: 86 Copynumber: 2.3 Consensus size: 88
2328771 TGTGGCATCT
** * *
2328781 TTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCA-CAATTCCGTGGCA-C-CCT-TCAAAGT
1 TTTAAGTCCACAACTTAGTGGCAT-CTTTCAAGTCCATCAATT-AGTGGCATCTCCTCTCAAAGT
2328842 CCACGACTCAGTGGCA-CCATTTTCC
64 CCACGACTCAGTGGCATCC-TTTTCC
* * * * * *
2328867 TTTAAGTCCACAACTTTGTGGTATCTTTCAATGTCCATGACTTAGTGGCATCTCTTCTCCAAGTC
1 TTTAAGTCCACAACTTAGTGGCATCTTTCAA-GTCCATCAATTAGTGGCATCTCCTCTCAAAGTC
* *
2328932 CACGACTCCGTGGCATCCTTTTTC
65 CACGACTCAGTGGCATCCTTTTCC
*
2328956 TTCTAAGTCCACGACTTAGTGGCATCT
1 TT-TAAGTCCACAACTTAGTGGCATCT
2328983 CTTCTCTAAG
Statistics
Matches: 95, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
85 6 0.06
86 32 0.34
87 4 0.04
88 2 0.02
89 28 0.29
90 23 0.24
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (88 bp):
TTTAAGTCCACAACTTAGTGGCATCTTTCAAGTCCATCAATTAGTGGCATCTCCTCTCAAAGTCC
ACGACTCAGTGGCATCCTTTTCC
Found at i:2328933 original size:30 final size:30
Alignment explanation
Indices: 2328838--2328996 Score: 128
Period size: 30 Copynumber: 5.2 Consensus size: 30
2328828 GCACCCTTCA
* * * *
2328838 AAGTCCACGACTCAGTGGCACCATTTTCCTTT
1 AAGTCCACGACTTAGTGGCATC-TCTT-CTCT
* * *
2328870 AAGTCCACAACTTTGTGG--TATCTT-TC-
1 AAGTCCACGACTTAGTGGCATCTCTTCTCT
* *
2328896 AATGTCCATGACTTAGTGGCATCTCTTCTCC
1 AA-GTCCACGACTTAGTGGCATCTCTTCTCT
** *
2328927 AAGTCCACGACTCCGTGGCATCCTTTTTCTTCT
1 AAGTCCACGACTTAGTGGCAT-C-TCTTC-TCT
2328960 AAGTCCACGACTTAGTGGCATCTCTTCTCT
1 AAGTCCACGACTTAGTGGCATCTCTTCTCT
2328990 AAGTCCA
1 AAGTCCA
2328997 AAACTTCATG
Statistics
Matches: 100, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
26 2 0.02
27 14 0.14
29 8 0.08
30 28 0.28
31 7 0.07
32 20 0.20
33 21 0.21
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.34
Consensus pattern (30 bp):
AAGTCCACGACTTAGTGGCATCTCTTCTCT
Found at i:2329009 original size:63 final size:62
Alignment explanation
Indices: 2328899--2329029 Score: 190
Period size: 63 Copynumber: 2.1 Consensus size: 62
2328889 ATCTTTCAAT
* ** *
2328899 GTCCATGACTTAGTGGCATCTCTTCTCCAAGTCCACGACTCCGTGGCATCCTTTTTCTTCTAA
1 GTCCACGACTTAGTGGCATCTCTTCTCCAAGTCCAAAACTCCATGGCAT-CTTTTTCTTCTAA
* * *
2328962 GTCCACGACTTAGTGGCATCTCTTCTCTAAGTCCAAAACTTCATGGCATCTTTTTCTTTTAA
1 GTCCACGACTTAGTGGCATCTCTTCTCCAAGTCCAAAACTCCATGGCATCTTTTTCTTCTAA
2329024 GTCCAC
1 GTCCAC
2329030 AACTCCATGG
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
62 18 0.30
63 43 0.70
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.36
Consensus pattern (62 bp):
GTCCACGACTTAGTGGCATCTCTTCTCCAAGTCCAAAACTCCATGGCATCTTTTTCTTCTAA
Found at i:2329090 original size:65 final size:67
Alignment explanation
Indices: 2329012--2329147 Score: 186
Period size: 67 Copynumber: 2.1 Consensus size: 67
2329002 TCATGGCATC
2329012 TTTTTCTTTTAAGTCCACAACTCCATGGCA-CTTTTT-CCTTTTAAATCCACAACTCCGTGGCAC
1 TTTTTCTTTTAAGTCCACAACTCCATGGCATCTTTTTCCCTTTTAAATCCACAACTCCGTGGCAC
2329075 CT
66 CT
* ** * * * * *
2329077 TTTTTCTTTTAAGTCCACATCTCTGTGGCATCTTTTTCCCTTTTAAGTCTATAACTTCGTTGCAC
1 TTTTTCTTTTAAGTCCACAACTCCATGGCATCTTTTTCCCTTTTAAATCCACAACTCCGTGGCAC
2329142 CT
66 CT
2329144 TTTT
1 TTTT
2329148 ATGTCCATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 27 0.44
66 6 0.10
67 28 0.46
ACGTcount: A:0.18, C:0.27, G:0.10, T:0.45
Consensus pattern (67 bp):
TTTTTCTTTTAAGTCCACAACTCCATGGCATCTTTTTCCCTTTTAAATCCACAACTCCGTGGCAC
CT
Found at i:2329146 original size:34 final size:33
Alignment explanation
Indices: 2328927--2329544 Score: 250
Period size: 32 Copynumber: 19.8 Consensus size: 33
2328917 TCTCTTCTCC
* * *
2328927 AAGTCCACGACTCCGTGGCATCCTTTTT-CTTCT
1 AAGTCCACAACTTCGTGGCA-CCTTTTTCCTTTT
* * * * *
2328960 AAGTCCACGACTTAGTGGCATC-TCTT-C-TCT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* * *
2328990 AAGTCCAAAACTTCATGGCATCTTTTT-CTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* *
2329022 AAGTCCACAACTCCATGGCA-CTTTTTCCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* * *
2329054 AAATCCACAACTCCGTGGCACCTTTTTTCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* *
2329087 AAGTCCACATC-TCTGTGGCATCTTTTTCCCTTTT
1 AAGTCCACAACTTC-GTGGCACCTTTTT-CCTTTT
* * *
2329121 AAGTCTATAACTTCGTTGCACC----T--TTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* * * *
2329148 ATGTCCATAACTCCGTGGCACCGTTTTCC-TTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* *
2329180 AAGTCCCCAACTCCGTGGCA------TCCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* * * *
2329207 AAGTCCATAACTCCGTAGCA-C-----CCTTTA
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* *
2329234 AAGTCCACAAC-TCAGTGGCATCATTTCTCC----
1 AAGTCCACAACTTC-GTGGCA-CCTTTTTCCTTTT
* * * * **
2329264 AAGTCCACGACTTAGTGGCATCTTTTTTCTTCC
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* ** * * *
2329297 AAGTCCACGAC-TCAGCAGCATC-TCTT-C-TCT
1 AAGTCCACAACTTC-GTGGCACCTTTTTCCTTTT
* * *
2329327 AAGTCTACAACTTTGTGGTACC-TTTTCCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* *
2329359 AAGTCCACAACTCCGTGGCATC-TTTTCCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
* *
2329391 AAGTCCATAACTTTGTGGCACCCTTTTTCCTTTT
1 AAGTCCACAACTTCGTGGCA-CCTTTTTCCTTTT
*
2329425 AAGTTCACAA-TTCCGTGGCA-C----T-CTTTT
1 AAGTCCACAACTT-CGTGGCACCTTTTTCCTTTT
* * * **
2329452 AAGTCCACCACTCCATGGCACGTCCTTTTT--TTCA
1 AAGTCCACAACTTCGTGGCA---CCTTTTTCCTTTT
* * * *
2329486 AAGGCCACAACTCCGTGGCATC-TTTTCCCTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
2329518 AAGTCCACAACTTCGTGGCACCTTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTT
2329545 AAGTCTATAA
Statistics
Matches: 450, Mismatches: 88, Indels: 94
0.71 0.14 0.15
Matches are distributed among these distances:
26 4 0.01
27 81 0.18
28 2 0.00
29 5 0.01
30 60 0.13
31 21 0.05
32 136 0.30
33 74 0.16
34 64 0.14
35 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (33 bp):
AAGTCCACAACTTCGTGGCACCTTTTTCCTTTT
Found at i:2329270 original size:30 final size:29
Alignment explanation
Indices: 2329234--2329383 Score: 95
Period size: 30 Copynumber: 4.9 Consensus size: 29
2329224 GCACCCTTTA
2329234 AAGTCCACAACTCAGTGGCATCATTTCTCC
1 AAGTCCACAACTCAGTGGCATC-TTTCTCC
* *
2329264 AAGTCCACGACTTAGTGGCATCTTTTTTCTTCC
1 AAGTCCACAACTCAGTGGCATC---TTTC-TCC
* ** *
2329297 AAGTCCACGACTCAGCAGCATCTCTTCTCT
1 AAGTCCACAACTCAGTGGCATCT-TTCTCC
* ** * *
2329327 AAGTCTACAACTTTGTGGTACCTTT-TCC
1 AAGTCCACAACTCAGTGGCATCTTTCTCC
*
2329355 TTTTAAGTCCACAACTCCGTGGCATCTTT
1 ----AAGTCCACAACTCAGTGGCATCTTT
2329384 TCCTTTTAAG
Statistics
Matches: 91, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
28 2 0.02
29 2 0.02
30 38 0.42
31 3 0.03
32 24 0.26
33 22 0.24
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.34
Consensus pattern (29 bp):
AAGTCCACAACTCAGTGGCATCTTTCTCC
Found at i:2329352 original size:63 final size:63
Alignment explanation
Indices: 2329234--2329371 Score: 145
Period size: 63 Copynumber: 2.2 Consensus size: 63
2329224 GCACCCTTTA
** * *
2329234 AAGTCCACAACTCAGTGGCATCATTTCTCCAAGTCCACGACTTAGTGGCATCTTTTTTCTTCC
1 AAGTCCACAACTCAGCAGCATCATTTCTCCAAGTCCACAACTTAGTGGCACCTTTTTTCTTCC
* * * * * * **
2329297 AAGTCCACGACTCAGCAGCATC-TCTTCTCTAAGTCTACAACTTTGTGGTACC-TTTTCCTTTT
1 AAGTCCACAACTCAGCAGCATCAT-TTCTCCAAGTCCACAACTTAGTGGCACCTTTTTTCTTCC
2329359 AAGTCCACAACTC
1 AAGTCCACAACTC
2329372 CGTGGCATCT
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
62 20 0.33
63 41 0.67
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.33
Consensus pattern (63 bp):
AAGTCCACAACTCAGCAGCATCATTTCTCCAAGTCCACAACTTAGTGGCACCTTTTTTCTTCC
Found at i:2329470 original size:27 final size:27
Alignment explanation
Indices: 2329420--2329472 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
2329410 ACCCTTTTTC
* * *
2329420 CTTTTAAGTTCACAATTCCGTGGCACT
1 CTTTTAAGTCCACAACTCCATGGCACT
*
2329447 CTTTTAAGTCCACCACTCCATGGCAC
1 CTTTTAAGTCCACAACTCCATGGCAC
2329473 GTCCTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCATGGCACT
Found at i:2329680 original size:52 final size:51
Alignment explanation
Indices: 2329602--2330305 Score: 354
Period size: 52 Copynumber: 13.9 Consensus size: 51
2329592 TGGTAACCCT
* * *
2329602 TTTAAGCCCAATATCGTTGGCCTTGAATTAGCACATTGGCATCTTTTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CTTTTTCATC
* * * * *
2329654 TTTAAGTCTAATATCGCTGACCTTGAATCAGCATATTGGCACATTTACTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTTTTC-ATC
* * * *
2329706 TTCAAG-CCTAACATCGCTGGCCTTGAATCAGCACATT---A----AT-ACC
1 TTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACATTGGCACTTTTTCATC
* * *
2329749 TTTAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGTGC-CTTTGTT-ATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATT-G-GCACTTT-TTCATC
* * * * *
2329801 TTTAAGTCTAATGTCGCTAGCCTTGGATCAGCACATT-G-A------CACC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTTTTCATC
* * * *
2329844 TTTAAGTCCAATATCACTGGCTTTGAATCAGCATATTGGCACCTTTTCCA-C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CTTTTTCATC
* * * * * * *
2329895 TTTTAATTCTAATGTCGTTGGCCTTGAATCAGTAAATTGGCACTTTTACCATC
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTTT-TCATC
* * * * * * * *
2329948 TTTCAGTCCAATGTCGCTGACTTTGAATCAACATATTAGCAC--CTT--T-
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTTTTCATC
* * *
2329994 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCAC--CTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTTTTCATC
* * * * **
2330043 TTTAAATCCGATATCGCTGGCCTTGAATTAGCATATTGGCATCTTTAACAT-
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CTTTTTCATC
* * * * *
2330094 TCCTAAGCCCAATGTCGTTGGCCTTGAATCAGCACATTAGCA-TTCTTCTCATC
1 T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTT-TT-TCATC
* * * * *
2330147 TTCAAGTCTAATATCGCTGGCCGTGAATCAGCACATTGACA-TTCTTCGCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTT-TT-TCATC
* * ** * **
2330199 TTGAAGCCCAATATCATTGGCCTTGAATCAACATTTTGGCATCTTTATCATTTTTCTAATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGG---C---A-C-TTTTTC--ATC
* * *
2330260 TTTAAGTCCAATATCGTTGGCCTTGAATTAGCATATTGGCA-TTTTT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTTTT
2330306 GCCACTCTTC
Statistics
Matches: 498, Mismatches: 106, Indels: 96
0.71 0.15 0.14
Matches are distributed among these distances:
43 64 0.13
44 2 0.00
45 1 0.00
46 40 0.08
47 1 0.00
48 1 0.00
49 37 0.07
50 4 0.01
51 14 0.03
52 287 0.58
53 2 0.00
55 2 0.00
58 2 0.00
59 1 0.00
60 2 0.00
61 38 0.08
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.36
Consensus pattern (51 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACTTTTTCATC
Found at i:2329772 original size:43 final size:43
Alignment explanation
Indices: 2329713--2329881 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
2329703 ATCTTCAAGC
* * *
2329713 CTAACATCGCTGGCCTTGAATCAGCACATTAATACCTTTAAGT
1 CTAATATCGCTAGCCTTGAATCAGCACATTGATACCTTTAAGT
* * *
2329756 CTAATATCGCTAGCCTTGAATCAGCATATTGGTGCCTTTGTTATCTTTAAGT
1 CTAATATCGCTAGCCTTGAATCAGC--A-------CATTGATACCTTTAAGT
* * *
2329808 CTAATGTCGCTAGCCTTGGATCAGCACATTGACACCTTTAAGT
1 CTAATATCGCTAGCCTTGAATCAGCACATTGATACCTTTAAGT
* * * * *
2329851 CCAATATCACTGGCTTTGAATCAGCATATTG
1 CTAATATCGCTAGCCTTGAATCAGCACATTG
2329882 GCACCTTTTC
Statistics
Matches: 98, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
43 60 0.61
45 1 0.01
50 1 0.01
52 36 0.37
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.34
Consensus pattern (43 bp):
CTAATATCGCTAGCCTTGAATCAGCACATTGATACCTTTAAGT
Found at i:2329818 original size:95 final size:93
Alignment explanation
Indices: 2329653--2330132 Score: 319
Period size: 95 Copynumber: 5.0 Consensus size: 93
2329643 TCTTTTTCAT
* * * * *
2329653 CTTTAAGTCTAATATCGCTGACCTTGAATCAGCATATTGGCACATTTACTATCTTCAAGCCTAAC
1 CTTTAAGTCTAATATCGCTG-CCTTGAATCAGCATATTGGCACCTTT-TTATCTTTAAGTCTAAT
* *
2329718 ATCGCTGGCCTTGAATCAGCACATTAATAC
64 GTCGCTGGCCTTGAATCAGCACATTAACAC
**
2329748 CTTTAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGTGCCTTTGTTATCTTTAAGTCTAAT
1 CTTTAAGTCTAATATCGCT-GCCTTGAATCAGCATATTGGCACCTTT-TTATCTTTAAGTCTAAT
* * *
2329813 GTCGCTAGCCTTGGATCAGCACATTGACAC
64 GTCGCTGGCCTTGAATCAGCACATTAACAC
* * * * *
2329843 CTTTAAGTCCAATATCACTGGCTTTGAATCAGCATATTGGCACCTTTTCCA-CTTTTAATTCTAA
1 CTTTAAGTCTAATATCGCT-GCCTTGAATCAGCATATTGGCACCTTTT-TATC-TTTAAGTCTAA
* * * *
2329907 TGTCGTTGGCCTTGAATCAGTAAATTGGCACTTTTACCAT
63 TGTCGCTGGCCTTGAATC-----A---GCAC-ATTAACAC
* * * * * * *
2329947 CTTTCAGTCCAATGTCGCTGACTTTGAATCAACATATTAGCACC---TT-T-TTTAAGTCCAATG
1 CTTTAAGTCTAATATCGCTG-CCTTGAATCAGCATATTGGCACCTTTTTATCTTTAAGTCTAATG
*
2330007 TCGCTGGCCTTGAATCAGCACATTAGCACCTTCAT
65 TCGCTGGCCTTGAATCAGCACATTA--A----CAC
* ** * * * * *
2330042 CTTTAAATCCGATATCGCTGGCCTTGAATTAGCATATTGGCA--TCTTTAACATTCCTAAGCCCA
1 CTTTAAGTCTAATATCGCT-GCCTTGAATCAGCATATTGGCACCTTTTTATC-TT--TAAGTCTA
*
2330105 ATGTCGTTGGCCTTGAATCAGCACATTA
62 ATGTCGCTGGCCTTGAATCAGCACATTA
2330133 GCATTCTTCT
Statistics
Matches: 306, Mismatches: 50, Indels: 52
0.75 0.12 0.13
Matches are distributed among these distances:
89 3 0.01
90 4 0.01
93 1 0.00
94 2 0.01
95 182 0.59
96 4 0.01
98 26 0.08
99 2 0.01
100 1 0.00
101 35 0.11
103 5 0.02
104 41 0.13
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (93 bp):
CTTTAAGTCTAATATCGCTGCCTTGAATCAGCATATTGGCACCTTTTTATCTTTAAGTCTAATGT
CGCTGGCCTTGAATCAGCACATTAACAC
Found at i:2330914 original size:13 final size:13
Alignment explanation
Indices: 2330896--2330921 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2330886 ACATAAGTTT
2330896 TGTATCGATACAA
1 TGTATCGATACAA
2330909 TGTATCGATACAA
1 TGTATCGATACAA
2330922 AACTACCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2331950 original size:20 final size:20
Alignment explanation
Indices: 2331906--2331950 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2331896 GTTAACAACC
2331906 CATG-TTCATGCATTTTGAG
1 CATGTTTCATGCATTTTGAG
2331925 CTATGTTTCATGCATTTAT-AG
1 C-ATGTTTCATGCATTT-TGAG
2331946 CATGT
1 CATGT
2331951 CCAGCTCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.04
20 7 0.30
21 14 0.61
22 1 0.04
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (20 bp):
CATGTTTCATGCATTTTGAG
Found at i:2334630 original size:51 final size:50
Alignment explanation
Indices: 2334558--2334653 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 50
2334548 GAAAATAACG
* *
2334558 GGGTTGGAGTATCCCCGATTAT-GAAAAATCGATGATTTAGAAATAAGGCAA
1 GGGTTGAAGTATCCCCAATTATAG-AAAATCGATGATTTA-AAATAAGGCAA
* * *
2334609 GGGTTGAAGTATCTCCAATTATAGAAAATTGATGTTTTAAAATAA
1 GGGTTGAAGTATCCCCAATTATAGAAAATCGATGATTTAAAATAA
2334654 AATTGGGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
50 6 0.15
51 32 0.82
52 1 0.03
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (50 bp):
GGGTTGAAGTATCCCCAATTATAGAAAATCGATGATTTAAAATAAGGCAA
Found at i:2334755 original size:51 final size:52
Alignment explanation
Indices: 2334685--2334805 Score: 163
Period size: 52 Copynumber: 2.3 Consensus size: 52
2334675 GTTAAAATAA
** *
2334685 TGGGGTTGGAGTATCCCCGATTATGAG-AAATCAATATTTTAGAAATAAGGC
1 TGGGGTTAAAGTATCCCCGATTATGAGAAAATCAATATTTTAGAAATAAAGC
* * *
2334736 TGGGGTTAAAGTATGCCCGATTGTGAGAAAATCAATATTTTGGAAATAAAGC
1 TGGGGTTAAAGTATCCCCGATTATGAGAAAATCAATATTTTAGAAATAAAGC
**
2334788 TGGGGTTGGAGTATCCCC
1 TGGGGTTAAAGTATCCCC
2334806 TCGGAAATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
51 23 0.38
52 37 0.62
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (52 bp):
TGGGGTTAAAGTATCCCCGATTATGAGAAAATCAATATTTTAGAAATAAAGC
Found at i:2334864 original size:28 final size:28
Alignment explanation
Indices: 2334789--2334864 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
2334779 AAATAAAGCT
***
2334789 GGGGTTGGAGTATCCCCTCGGAAATAAC
1 GGGGTTGGAGTATCCCCGATGAAATAAC
* *
2334817 GGGGCTGGAGTATCCTCGATGAAATAAC
1 GGGGTTGGAGTATCCCCGATGAAATAAC
*
2334845 GGGGTTTGAGTATCCCCGAT
1 GGGGTTGGAGTATCCCCGAT
2334865 TGTGAAAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCGATGAAATAAC
Found at i:2334962 original size:51 final size:51
Alignment explanation
Indices: 2334844--2334963 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 51
2334834 GATGAAATAA
* *
2334844 CGGGGTTTGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAAT
** * * * * *
2334895 CGGACTTGAAGCATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAA-
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAAT
2334945 CTGGGGTTGGAGTATCCCC
1 C-GGGGTTGGAGTATCCCC
2334964 TCGAAAATAA
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
50 1 0.02
51 54 0.98
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAAT
Found at i:2335020 original size:79 final size:79
Alignment explanation
Indices: 2334931--2335151 Score: 320
Period size: 79 Copynumber: 2.8 Consensus size: 79
2334921 AGAATTGGTG
2334931 TTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACT
1 TTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACT
*
2334996 ATGA-AATATTGATA
66 ATGAGAA-ATTAATA
* * * *
2335010 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGAAGTATCCCTGATT
1 TTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACT
2335075 ATGAGAAATTAATA
66 ATGAGAAATTAATA
* * * * *
2335089 TTTTAGAAATAAAGA-TGGGGTTGGAGTATCCCCTCAAAAATAATGAGATTAGAGTATCCCCGA
1 TTTTAGAAATAAA-ACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGA
2335152 TGAAAAACTT
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 124 0.98
80 3 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (79 bp):
TTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACT
ATGAGAAATTAATA
Found at i:2335863 original size:20 final size:20
Alignment explanation
Indices: 2335838--2335948 Score: 161
Period size: 20 Copynumber: 5.5 Consensus size: 20
2335828 AAAATGCTTG
* *
2335838 AATGTATCGATACATTGTA-A
1 AATGTATCGATACAATG-AGC
2335858 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGC
*
2335878 AATGTACCGATACAATGAGC
1 AATGTATCGATACAATGAGC
*
2335898 AACGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGC
*
2335918 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAGC
2335938 AATGTATCGAT
1 AATGTATCGAT
2335949 TCAAATTGTG
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
19 1 0.01
20 82 0.99
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAATGAGC
Found at i:2337689 original size:98 final size:95
Alignment explanation
Indices: 2337571--2337784 Score: 214
Period size: 95 Copynumber: 2.2 Consensus size: 95
2337561 AAAATTTACT
* * * * * * * *
2337571 TCATTGGGGATATTCTAACCCTATTTTTTCGAGAGGATACACCAACC-CTGTTTTTAAAACTTAT
1 TCATTGGGGATACTCCAACCCGATTATTCCAAGAGGATACACCAACCTC-ATCTTT-AAACTTAT
2337635 CAAGATTTAAAACTTACTTTTGCTTAAATTATCA
64 CAAGA--TAAAACTTACTTTTGCTTAAATTATCA
* * * * *
2337669 TCATTGGGGATGCTCCAACCCGATTATTCCAAGGGGATGCTCCAACCTCATCTTTAAACTTGTCA
1 TCATTGGGGATACTCCAACCCGATTATTCCAAGAGGATACACCAACCTCATCTTTAAACTTATCA
** *
2337734 AGATAATTCTTATTTTTGCTTAAATTATCA
66 AGATAAAACTTACTTTTGCTTAAATTATCA
* * *
2337764 TCGTTAGAGATACTCCAACCC
1 TCATTGGGGATACTCCAACCC
2337785 CATTCCTCTG
Statistics
Matches: 95, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
95 41 0.43
97 12 0.13
98 41 0.43
99 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (95 bp):
TCATTGGGGATACTCCAACCCGATTATTCCAAGAGGATACACCAACCTCATCTTTAAACTTATCA
AGATAAAACTTACTTTTGCTTAAATTATCA
Found at i:2341207 original size:21 final size:22
Alignment explanation
Indices: 2341159--2341211 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
2341149 CCCCAGGTAA
*
2341159 AATAAATCAAGATATAAAAATG
1 AATAAATCAAGACATAAAAATG
*
2341181 AATAAAT-AAGACATAGAAA-G
1 AATAAATCAAGACATAAAAATG
2341201 AATTAAATCAA
1 AA-TAAATCAA
2341212 ATCATGAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 3 0.11
21 15 0.56
22 9 0.33
ACGTcount: A:0.64, C:0.06, G:0.09, T:0.21
Consensus pattern (22 bp):
AATAAATCAAGACATAAAAATG
Found at i:2341515 original size:43 final size:43
Alignment explanation
Indices: 2341467--2341640 Score: 151
Period size: 43 Copynumber: 4.1 Consensus size: 43
2341457 GCTTATCGGT
* **
2341467 TTTGAC-CTTGGAGACTTTTCTATCCCTTAGTCTGCCTATTGGC
1 TTTGACTC-TGGAGACTTTCCTATCCCTTAGTCTGCCTATCAGC
* * *
2341510 TTTGACTCTGGAGAC-TGCCTCAT---TTAAAGTCTGCCTGTCGGC
1 TTTGACTCTGGAGACTTTCCT-ATCCCTT--AGTCTGCCTATCAGC
* * * * *
2341552 TTTGTCTGTAGAGACTTTCCTATCCCTAAGTCTGCCAATCAGC
1 TTTGACTCTGGAGACTTTCCTATCCCTTAGTCTGCCTATCAGC
* * *
2341595 TTTGACTCTAGAGACTTTTCTATCCCTTAGTCTACCTATCAGC
1 TTTGACTCTGGAGACTTTCCTATCCCTTAGTCTGCCTATCAGC
2341638 TTT
1 TTT
2341641 AACCTTGGAG
Statistics
Matches: 105, Mismatches: 18, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
40 2 0.02
42 30 0.29
43 71 0.68
44 1 0.01
45 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (43 bp):
TTTGACTCTGGAGACTTTCCTATCCCTTAGTCTGCCTATCAGC
Found at i:2341730 original size:43 final size:43
Alignment explanation
Indices: 2341672--2342528 Score: 834
Period size: 43 Copynumber: 20.2 Consensus size: 43
2341662 GCTTCGTCCC
* * * *
2341672 TGGAGACTTTCCTATCCCTAAGTCTGCCTATCGGTTTTGACCC
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* * *
2341715 TGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACCC
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * * * * * *
2341758 TGGACAC-TACCTCAT--TTAAATTCTGCCTGTCAGCTTCGTCCT
1 TGGAGACTTTCCT-ATCCCT-CAGTCTGCCTGTCGGCTTTGACCT
* **
2341800 T-G-GAC-TTCCTATCCCTAAGTCTGTTTGTCGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
** * *
2341840 TGGAGACTTTTTTATCCCTTAGTCTGCTTGTCGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* *
2341883 TGGAGACTTTTCTATCCCTCAGTCTGCCTATCGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * * *
2341926 TGGAGACTTTCTTA-CCCTCAGTTTGCCTTTTGGCTTTGACCC
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* ** * * * *
2341968 TAGAGACTTTCCTATATCTCAGTCTACCTATCAGTTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* *
2342011 TAGAGACTTTCCTA-CCCTCAATCTGCCTGTCGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * * *
2342053 TGGAGA-TTGCTTTAT--CTAAGGTCTGCTTGTCGGCTTTAACCT
1 TGGAGACTTTC-CTATCCCTCA-GTCTGCCTGTCGGCTTTGACCT
* *
2342095 TGAAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
*
2342138 TGGAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * *
2342181 TGGAGACTTTCCTA-CCCTCAGTCTGTCTTTTGGCTTTGACCC
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* ** * * * *
2342223 TAGAGACTTTCCTATATCTCAGTCTGCCTATCAGTTTTGACCC
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
*
2342266 TGGAGACTTTCCTA-CCCTCAGTCTGCCTGTTGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * *
2342308 TGGAGAC-TGCCTTAT--CTAAGGTCTGCTTGTCGACTTTGACCT
1 TGGAGACTTTCC-TATCCCTCA-GTCTGCCTGTCGGCTTTGACCT
* * *
2342350 TGGAGACTTTCCCATCCCTCAGTCTACTTGTCGGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * *
2342393 TGGAGAC-TGCCTTAT--CTAAAGTCTGCCTGTCGACTTTGACCC
1 TGGAGACTTTCC-TATCCCT-CAGTCTGCCTGTCGGCTTTGACCT
* * * * *
2342435 TGGAGACTTTCTTATCCCTTAGTCTACCTATCAGCTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
*
2342478 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGACTTTGACCT
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
2342521 TGGAGACT
1 TGGAGACT
2342529 GCCTCATCTA
Statistics
Matches: 667, Mismatches: 121, Indels: 52
0.79 0.14 0.06
Matches are distributed among these distances:
39 2 0.00
40 25 0.04
41 18 0.03
42 243 0.36
43 371 0.56
44 8 0.01
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.37
Consensus pattern (43 bp):
TGGAGACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCT
Found at i:2341998 original size:85 final size:86
Alignment explanation
Indices: 2341672--2342528 Score: 789
Period size: 85 Copynumber: 10.1 Consensus size: 86
2341662 GCTTCGTCCC
* * * * * ** *
2341672 TGGAGACTTTCCTATCCCTAAGTCTGCCTATCGGTTTTGACCCTGGAGACTTTTCTATCCCTTAG
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTCAG
* *
2341737 TCTGCCTGTCGGCTTTGACCC
66 TCTGCCTATCGGCTTTGACCT
* * * * * * * * * ** *
2341758 TGGACAC-TACCTCAT--TTAAATTCTGCCTGTCAGCTTCGTCCTT-G-GAC-TTCCTATCCCTA
1 TGGAGACTTTCCT-ATCCCT-CAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTC
** *
2341817 AGTCTGTTTGTCGGCTTTGACCT
64 AGTCTGCCTATCGGCTTTGACCT
** * * **
2341840 TGGAGACTTTTTTATCCCTTAGTCTG-CTTGTCGGCTTTGACCTTGGAGACTTTTCTATCCCTCA
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTT-TCGGCTTTGACCTTGGAGACTTTCCTATATCTCA
2341904 GTCTGCCTATCGGCTTTGACCT
65 GTCTGCCTATCGGCTTTGACCT
* * * * *
2341926 TGGAGACTTTCTTA-CCCTCAGTTTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAG
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTCAG
* * *
2341990 TCTACCTATCAGTTTTGACCT
66 TCTGCCTATCGGCTTTGACCT
* * * * * *
2342011 TAGAGACTTTCCTA-CCCTCAATCTGCCTGTCGGCTTTGACCTTGGAGA--TTGCTTTATCTAAG
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTCA-
* * *
2342073 GTCTGCTTGTCGGCTTTAACCT
65 GTCTGCCTATCGGCTTTGACCT
* * **
2342095 TGAAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAG
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTCAG
2342160 TCTGCCTATCGGCTTTGACCT
66 TCTGCCTATCGGCTTTGACCT
* * * *
2342181 TGGAGACTTTCCTA-CCCTCAGTCTGTCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAG
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTCAG
* * *
2342245 TCTGCCTATCAGTTTTGACCC
66 TCTGCCTATCGGCTTTGACCT
* *
2342266 TGGAGACTTTCCTA-CCCTCAGTCTGCCTGTT-GGCTTTGACCTTGGAGAC-TGCCT-TATCTAA
1 TGGAGACTTTCCTATCCCTCAGTCTGCCT-TTCGGCTTTGACCTTGGAGACTTTCCTATATCTCA
* * *
2342327 GGTCTGCTTGTCGACTTTGACCT
65 -GTCTGCCTATCGGCTTTGACCT
* * * *
2342350 TGGAGACTTTCCCATCCCTCAGTCT-ACTTGTCGGCTTTGACCTTGGAGAC-TGCCT-TATCTAA
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTT-TCGGCTTTGACCTTGGAGACTTTCCTATATCT-C
* * *
2342412 AGTCTGCCTGTCGACTTTGACCC
64 AGTCTGCCTATCGGCTTTGACCT
* * * * * **
2342435 TGGAGACTTTCTTATCCCTTAGTCTACCTATCAGCTTTGACCTTGGAGACTTTCCTATCCCTCAG
1 TGGAGACTTTCCTATCCCTCAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTCAG
* *
2342500 TCTGCCTGTCGACTTTGACCT
66 TCTGCCTATCGGCTTTGACCT
2342521 TGGAGACT
1 TGGAGACT
2342529 GCCTCATCTA
Statistics
Matches: 639, Mismatches: 109, Indels: 46
0.80 0.14 0.06
Matches are distributed among these distances:
82 40 0.06
83 38 0.06
84 68 0.11
85 356 0.56
86 126 0.20
87 11 0.02
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.37
Consensus pattern (86 bp):
TGGAGACTTTCCTATCCCTCAGTCTGCCTTTCGGCTTTGACCTTGGAGACTTTCCTATATCTCAG
TCTGCCTATCGGCTTTGACCT
Found at i:2342102 original size:127 final size:127
Alignment explanation
Indices: 2341672--2342528 Score: 684
Period size: 128 Copynumber: 6.7 Consensus size: 127
2341662 GCTTCGTCCC
* * * * * * * *
2341672 TGGAGACTTTCCTATCCCTAAGTCTGCCTATCGGTTTTGACCCTGGAGACTTTTCTATCCCTTAG
1 TGGAGACTTGCTTA-CCCTAAGTCTGCCTTTCGGCTTTGACCCTAGAGACTTTCCTATACCTCAG
* * * * * * ** * * * * *
2341737 TCTGCCTGTCGGCTTTGACCCTGGACAC-TACCT-CATTTAAATTCTGCCTGTCAGCTTCGTCCT
65 TCTACCTATCAGCTTTGACCTTGGAGACTTTCCTAC-CCT-CAGTCTGCCTGTCGGCTTTGACCT
* * * * ** * *
2341800 T-G-GACTT-CCTATCCCTAAGTCTG-TTTGTCGGCTTTGACCTTGGAGACTTTTTTATCCCTTA
1 TGGAGACTTGCTTA-CCCTAAGTCTGCCTT-TCGGCTTTGACCCTAGAGACTTTCCTATACCTCA
* * * * * *
2341861 GTCTGCTTGTCGGCTTTGACCTTGGAGACTTTTCTATCCCTCAGTCTGCCTATCGGCTTTGACCT
64 GTCTACCTATCAGCTTTGACCTTGGAGACTTTCCTA-CCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * * *
2341926 TGGAGACTTTCTTACCCTCAGTTTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGT
1 TGGAGACTTGCTTACCCTAAGTCTGCCTTTCGGCTTTGACCCTAGAGACTTTCCTATACCTCAGT
* * *
2341991 CTACCTATCAGTTTTGACCTTAGAGACTTTCCTACCCTCAATCTGCCTGTCGGCTTTGACCT
66 CTACCTATCAGCTTTGACCTTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * *
2342053 TGGAGA-TTGCTTTA-TCTAAGGTCTG-CTTGTCGGCTTT-AACCTTGAAGACTTTCCTATCCCT
1 TGGAGACTTGC-TTACCCTAA-GTCTGCCTT-TCGGCTTTGACCCTAG-AGACTTTCCTATACCT
* * *
2342114 CAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGAC
62 CAGTCTACCTATCAGCTTTGACCTTGGAGACTTTCCTA-CCCTCAGTCTGCCTGTCGGCTTTGAC
2342179 CT
126 CT
* * * * * *
2342181 TGGAGACTTTCCTACCCTCAGTCTGTCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGT
1 TGGAGACTTGCTTACCCTAAGTCTGCCTTTCGGCTTTGACCCTAGAGACTTTCCTATACCTCAGT
* * * *
2342246 CTGCCTATCAGTTTTGACCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTTGGCTTTGACCT
66 CTACCTATCAGCTTTGACCTTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCT
* * * * * *
2342308 TGGAGAC-TGCCTTA-TCTAAGGTCTG-CTTGTCGACTTTGACCTTGGAGACTTTCCCATCCCTC
1 TGGAGACTTG-CTTACCCTAA-GTCTGCCTT-TCGGCTTTGACCCTAGAGACTTTCCTATACCTC
* * * * * * *
2342370 AGTCTACTTGTCGGCTTTGACCTTGGAGAC-TGCCTTA-TCTAAAGTCTGCCTGTCGACTTTGAC
63 AGTCTACCTATCAGCTTTGACCTTGGAGACTTTCC-TACCCT-CAGTCTGCCTGTCGGCTTTGAC
*
2342433 CC
126 CT
* * * * * * * *
2342435 TGGAGACTTTCTTATCCCTTAGTCTACCTATCAGCTTTGACCTTGGAGACTTTCCTATCCCTCAG
1 TGGAGACTTGCTTA-CCCTAAGTCTGCCTTTCGGCTTTGACCCTAGAGACTTTCCTATACCTCAG
* *
2342500 TCTGCCTGTC-GACTTTGACCTTGGAGACT
65 TCTACCTATCAG-CTTTGACCTTGGAGACT
2342529 GCCTCATCTA
Statistics
Matches: 600, Mismatches: 101, Indels: 55
0.79 0.13 0.07
Matches are distributed among these distances:
124 1 0.00
125 73 0.12
126 53 0.09
127 222 0.37
128 227 0.38
129 24 0.04
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.37
Consensus pattern (127 bp):
TGGAGACTTGCTTACCCTAAGTCTGCCTTTCGGCTTTGACCCTAGAGACTTTCCTATACCTCAGT
CTACCTATCAGCTTTGACCTTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCT
Found at i:2342156 original size:255 final size:255
Alignment explanation
Indices: 2341814--2342528 Score: 1017
Period size: 255 Copynumber: 2.8 Consensus size: 255
2341804 CTTCCTATCC
* ** *
2341814 CTAA-GTCTGTTTGTCGGCTTTGACCTTGGAGACTTTTTTATCCCTTAGTCTGCTTGTCGGCTTT
1 CTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGTCTGCTTGTCGGCTTT
*
2341878 GACCTTGGAGACTTTTCTATCCCTCAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCTTACCC
66 GACCTTGGAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCTTACCC
* *
2341943 TCAGTTTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGTCTACCTATCAGTTTTGA
131 TCAGTCTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGTCTGCCTATCAGTTTTGA
* * *
2342008 CCTTAGAGACTTTCCTACCCTCAATCTGCCTGTCGGCTTTGACCTTGGAGATTGCTTTAT
196 CCTTGGAGACTTTCCTACCCTCAATCTGCCTGTCGGCTTTGACCTTGGAGACTGCCTTAT
* * * *
2342068 CTAAGGTCTGCTTGTCGGCTTTAACCTTGAAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTT
1 CTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGTCTGCTTGTCGGCTTT
*
2342133 GACCTTGGAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCCTACCC
66 GACCTTGGAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCTTACCC
*
2342198 TCAGTCTGTCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGTCTGCCTATCAGTTTTGA
131 TCAGTCTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGTCTGCCTATCAGTTTTGA
* * *
2342263 CCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTTGGCTTTGACCTTGGAGACTGCCTTAT
196 CCTTGGAGACTTTCCTACCCTCAATCTGCCTGTCGGCTTTGACCTTGGAGACTGCCTTAT
* * *
2342323 CTAAGGTCTGCTTGTCGACTTTGACCTTGGAGACTTTCCCATCCCTCAGTCTACTTGTCGGCTTT
1 CTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGTCTGCTTGTCGGCTTT
* * * * *
2342388 GACCTTGGAGAC-TGCCTTAT--CTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTTCTTAT
66 GACCTTGGAGACTTTCC-TATCCCT-CAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCTTA-
* * * ** * * ** * *
2342450 CCCTTAGTCTACCTATCAGCTTTGACCTTGGAGACTTTCCTATCCCTCAGTCTGCCTGTC-GACT
128 CCCTCAGTCTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGTCTGCCTATCAG-TT
2342514 TTGACCTTGGAGACT
192 TTGACCTTGGAGACT
2342529 GCCTCATCTA
Statistics
Matches: 411, Mismatches: 45, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
253 2 0.00
254 41 0.10
255 368 0.90
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.37
Consensus pattern (255 bp):
CTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGTCTGCTTGTCGGCTTT
GACCTTGGAGACTTTCCTATCCCTCAGTCTGCCTATCGGCTTTGACCTTGGAGACTTTCTTACCC
TCAGTCTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTCAGTCTGCCTATCAGTTTTGA
CCTTGGAGACTTTCCTACCCTCAATCTGCCTGTCGGCTTTGACCTTGGAGACTGCCTTAT
Found at i:2342550 original size:255 final size:253
Alignment explanation
Indices: 2341669--2342528 Score: 964
Period size: 255 Copynumber: 3.4 Consensus size: 253
2341659 TAGGCTTCGT
* * * * *
2341669 CCCTGGAGACTTTCCTATCCCTAAGTCTGCCTATCGGTTTTGACCCTGGAGACTTTTCTATCCCT
1 CCCTGGAGACTTTCCTA-CCCTCAGTCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATACCT
* * * * * ** * * *
2341734 TAGTCTGCCTGTCGGCTTTGACCCTGGACAC-TACCT-CATTTAAATTCTGCCTGTCAGCTTCGT
65 CAGTCTGCCTATCAGCTTTGACCCTGGAGACTTTCCTAC-CCTAAA-TCTGCCTGTCGGCTTTGA
* * **
2341797 CCTT-G-GACTTCC-TATCCCTAA-GTCTGTTTGTCGGCTTTGACCTTGGAGACTTTTTTATCCC
128 CCTTGGAGACTGCCTTAT--CTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCC
* **
2341858 TTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTTCTATCCCTCAGTCTGCCTATCGGCTTTGA
191 TCAGTCTGCTTGTCGGCTTTGACCTTGGAGACTCCT-TAT-CCTCAGTCTGCCTATCGGCTTTGA
* * * * * *
2341923 CCTTGGAGACTTTCTTACCCTCAGTTTGCCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTC
1 CCCTGGAGACTTTCCTACCCTCAGTCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATACCTC
* * * * *
2341988 AGTCTACCTATCAGTTTTGACCTTAGAGACTTTCCTACCCTCAATCTGCCTGTCGGCTTTGACCT
66 AGTCTGCCTATCAGCTTTGACCCTGGAGACTTTCCTACCCTAAATCTGCCTGTCGGCTTTGACCT
* * * *
2342053 TGGAGATTGCTTTATCTAAGGTCTGCTTGTCGGCTTTAACCTTGAAGACTTTCCTATCCCTCAGT
131 TGGAGACTGCCTTATCTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGT
* *
2342118 CTGCCTATCGGCTTTGACCTTGGAGACTTTCC-TATCCCTCAGTCTGCCTATCGGCTTTGA
196 CTGCTTGTCGGCTTTGACCTTGGAGAC--TCCTTAT-CCTCAGTCTGCCTATCGGCTTTGA
* * * * *
2342178 CCTTGGAGACTTTCCTACCCTCAGTCTGTCTTTTGGCTTTGACCCTAGAGACTTTCCTATATCTC
1 CCCTGGAGACTTTCCTACCCTCAGTCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATACCTC
* * * *
2342243 AGTCTGCCTATCAGTTTTGACCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTTGGCTTTGACCT
66 AGTCTGCCTATCAGCTTTGACCCTGGAGACTTTCCTACCCTAAATCTGCCTGTCGGCTTTGACCT
* *
2342308 TGGAGACTGCCTTATCTAAGGTCTGCTTGTCGACTTTGACCTTGGAGACTTTCCCATCCCTCAGT
131 TGGAGACTGCCTTATCTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGT
* * * *
2342373 CTACTTGTCGGCTTTGACCTTGGAGACTGCCTTAT-CTAAAGTCTGCCTGTCGACTTTGA
196 CTGCTTGTCGGCTTTGACCTTGGAGACT-CCTTATCCT-CAGTCTGCCTATCGGCTTTGA
* * * * * * *
2342432 CCCTGGAGACTTTCTTATCCCTTAGTCTACCTATCAGCTTTGACCTTGGAGACTTTCCTATCCCT
1 CCCTGGAGACTTTCCTA-CCCTCAGTCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATACCT
* *
2342497 CAGTCTGCCTGTC-GACTTTGACCTTGGAGACT
65 CAGTCTGCCTATCAG-CTTTGACCCTGGAGACT
2342529 GCCTCATCTA
Statistics
Matches: 519, Mismatches: 74, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
253 83 0.16
254 63 0.12
255 369 0.71
256 3 0.01
257 1 0.00
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.37
Consensus pattern (253 bp):
CCCTGGAGACTTTCCTACCCTCAGTCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATACCTC
AGTCTGCCTATCAGCTTTGACCCTGGAGACTTTCCTACCCTAAATCTGCCTGTCGGCTTTGACCT
TGGAGACTGCCTTATCTAAGGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGT
CTGCTTGTCGGCTTTGACCTTGGAGACTCCTTATCCTCAGTCTGCCTATCGGCTTTGA
Found at i:2343064 original size:9 final size:9
Alignment explanation
Indices: 2343045--2343078 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
2343035 GTAGAAATCC
2343045 AAAAT-AAA
1 AAAATAAAA
2343053 AAAATAAAA
1 AAAATAAAA
2343062 AAAATAAAA
1 AAAATAAAA
2343071 AAAATAAA
1 AAAATAAA
2343079 TCATGAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.20
9 20 0.80
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAA
Found at i:2343683 original size:30 final size:30
Alignment explanation
Indices: 2343612--2343692 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
2343602 GACAAGCACG
2343612 AACAGTAGCTCCAACAAGCAC-GCAACAAC
1 AACAGTAGCTCCAACAAGCACGGCAACAAC
* * * *
2343641 AATAATATCTCCAACAAGCACGGCAGCAAC
1 AACAGTAGCTCCAACAAGCACGGCAACAAC
*
2343671 AACAGCAGCTCCAACAAGCACG
1 AACAGTAGCTCCAACAAGCACG
2343693 AATAGTAGCT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 18 0.42
30 25 0.58
ACGTcount: A:0.43, C:0.33, G:0.15, T:0.09
Consensus pattern (30 bp):
AACAGTAGCTCCAACAAGCACGGCAACAAC
Found at i:2344033 original size:19 final size:19
Alignment explanation
Indices: 2343999--2344049 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
2343989 CTTCACTTTG
*
2343999 CTTTGATTTACTTAATTTTC
1 CTTTGA-TTCCTTAATTTTC
2344019 CTTTGATTCCTTAATTTTC
1 CTTTGATTCCTTAATTTTC
*
2344038 TTTTGATTCCTT
1 CTTTGATTCCTT
2344050 TCTTCATGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 23 0.79
20 6 0.21
ACGTcount: A:0.16, C:0.18, G:0.06, T:0.61
Consensus pattern (19 bp):
CTTTGATTCCTTAATTTTC
Found at i:2346217 original size:19 final size:20
Alignment explanation
Indices: 2346174--2346226 Score: 90
Period size: 19 Copynumber: 2.7 Consensus size: 20
2346164 ATTTCAACGA
2346174 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATAAAGT
*
2346194 GTTGTATCGATACAT-AAGT
1 TTTGTATCGATACATAAAGT
2346213 TTTGTATCGATACA
1 TTTGTATCGATACA
2346227 ATATAAGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (20 bp):
TTTGTATCGATACATAAAGT
Found at i:2346345 original size:52 final size:50
Alignment explanation
Indices: 2346282--2346430 Score: 199
Period size: 52 Copynumber: 2.9 Consensus size: 50
2346272 ATCGATACAT
* *
2346282 TGTATCGATACACTGATCTTTGTATCGATACATGCAGGAAAATTTGCCCAGA
1 TGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
2346334 TGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCTAGA
1 TGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
2346386 TGTATCGATACACTATTAAATGTATCGATACATGCAAGCAAATTT
1 TGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
2346431 CATATTTCGA
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (50 bp):
TGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:2353986 original size:97 final size:98
Alignment explanation
Indices: 2353762--2353991 Score: 331
Period size: 97 Copynumber: 2.4 Consensus size: 98
2353752 TGAAAAACGA
* * * *
2353762 GGTTGGAGTATCCCTTCGGAGGAATAGGATT-AGAGTGTCCTTGATGATGACAATTTAAGTGAGA
1 GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGAGAGTGTCCCTAATGATGACAATTTAAGTGAGA
2353826 ATAAAATTTAAACTTTGATGCATTTAAAAGCGG
66 ATAAAATTTAAACTTTGATGCATTTAAAAGCGG
* ** * *
2353859 GGTTGGAGTATCTCCTTAGAGGAATGGGGTTGA-AGTGTCCCTAATGGTGACAATTTAAGTGAGA
1 GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGAGAGTGTCCCTAATGATGACAATTTAAGTGAGA
* **
2353923 ATAAGATTTAAACTTTGATGTGTTTAAAAGCGG
66 ATAAAATTTAAACTTTGATGCATTTAAAAGCGG
2353956 GGTTGGAGTATCCCCTCGGAGGAATAGGGTTG-GAGT
1 GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGAGAGT
2353992 ATCCTCGATA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
97 114 0.99
98 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (98 bp):
GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGAGAGTGTCCCTAATGATGACAATTTAAGTGAGA
ATAAAATTTAAACTTTGATGCATTTAAAAGCGG
Found at i:2355745 original size:9 final size:9
Alignment explanation
Indices: 2355707--2355747 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
2355697 CTATTTCTTC
2355707 TTTCTTTTCT
1 TTTCTTTT-T
2355717 TTCTCTTTTT
1 TT-TCTTTTT
*
2355727 TTTCTCTTT
1 TTTCTTTTT
2355736 TTTCTTTTT
1 TTTCTTTTT
2355745 TTT
1 TTT
2355748 TTAGTTGAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 17 0.61
10 5 0.18
11 6 0.21
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:2355749 original size:11 final size:11
Alignment explanation
Indices: 2355709--2355738 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
2355699 ATTTCTTCTT
*
2355709 TCTTTTCTTTC
1 TCTTTTTTTTC
2355720 TCTTTTTTTTC
1 TCTTTTTTTTC
2355731 TCTTTTTT
1 TCTTTTTT
2355739 CTTTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TCTTTTTTTTC
Found at i:2357259 original size:31 final size:31
Alignment explanation
Indices: 2357220--2357308 Score: 160
Period size: 31 Copynumber: 2.9 Consensus size: 31
2357210 ACTCGGACAT
2357220 AGGTGCCACCAACTTGTGTGGGCTTTGACTA
1 AGGTGCCACCAACTTGTGTGGGCTTTGACTA
*
2357251 GGGTGCCACCAACTTGTGTGGGCTTTGACTA
1 AGGTGCCACCAACTTGTGTGGGCTTTGACTA
*
2357282 AGGTGCCACCAATTTGTGTGGGCTTTG
1 AGGTGCCACCAACTTGTGTGGGCTTTG
2357309 GAAAGGGTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.17, C:0.21, G:0.31, T:0.30
Consensus pattern (31 bp):
AGGTGCCACCAACTTGTGTGGGCTTTGACTA
Found at i:2357355 original size:28 final size:28
Alignment explanation
Indices: 2357298--2357671 Score: 335
Period size: 28 Copynumber: 13.1 Consensus size: 28
2357288 CACCAATTTG
*
2357298 TGTGGGCTTTGGAAAGGGTTGCCACTGACT
1 TGTGGGCTTTAGAAA-GG-TGCCACTGACT
* * *
2357328 TGTGAGCTTTACAAAGGTGCCATTGACT
1 TGTGGGCTTTAGAAAGGTGCCACTGACT
* * *
2357356 TGTTGGCTTTTGAAAGGTGCCACTAACT
1 TGTGGGCTTTAGAAAGGTGCCACTGACT
* * *
2357384 TGTTGGCTTTTGAAAGGTGCCATTGACT
1 TGTGGGCTTTAGAAAGGTGCCACTGACT
*
2357412 TGTGGGCTTT-GAAAGGTGCCACTAACT
1 TGTGGGCTTTAGAAAGGTGCCACTGACT
*
2357439 TGTGGGCTTT-GAAAGGATGTCACTGACT
1 TGTGGGCTTTAGAAAGG-TGCCACTGACT
* * * * *
2357467 TATGGGCTTTTGAAAAGATGCCATTAACT
1 TGTGGGCTTTAG-AAAGGTGCCACTGACT
* * *
2357496 TATGGGCTTTTGAAAGGATGCCATTGACT
1 TGTGGGCTTTAGAAAGG-TGCCACTGACT
* *
2357525 TGTGGGCTTTTA-AAATGATGCCACTAACT
1 TGTGGGC-TTTAGAAA-GGTGCCACTGACT
* *
2357554 TGTGGGCTTTA-AAAGGATGCCAATAACT
1 TGTGGGCTTTAGAAAGG-TGCCACTGACT
* * * *
2357582 CGTGGGCTTTTGGAATGATGCCACTGACT
1 TGTGGGC-TTTAGAAAGGTGCCACTGACT
* *
2357611 TGTGGGCTTTAAAAAGGATGCCACTAACT
1 TGTGGGCTTTAGAAAGG-TGCCACTGACT
*
2357640 TGTGGGCTTT-GAAAGGATGCTACTGACT
1 TGTGGGCTTTAGAAAGG-TGCCACTGACT
2357668 TGTG
1 TGTG
2357672 CCACTGACTT
Statistics
Matches: 288, Mismatches: 46, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
27 32 0.11
28 137 0.48
29 96 0.33
30 23 0.08
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (28 bp):
TGTGGGCTTTAGAAAGGTGCCACTGACT
Found at i:2357503 original size:57 final size:56
Alignment explanation
Indices: 2357298--2357917 Score: 496
Period size: 57 Copynumber: 10.7 Consensus size: 56
2357288 CACCAATTTG
* * * * * *
2357298 TGTGGGCTTTGGAAAGGGTTGCCACTGACTTGTGAGCTTTACAAAGG-TGCCATTGACT
1 TGTGGGCTTT-GAAA-AGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* * * *
2357356 TGTTGGCTTTTG-AAAGGTGCCACTAACTTGTTGGCTTTTGAAAGG-TGCCATTGACT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTGACT
* *
2357412 TGTGGGCTTTG-AAAGGTGCCACTAACTTGTGGGCTTTGAAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
2357467 TATGGGCTTTTGAAAAGATGCCATTAACTTATGGGCTTTTGAAAGGATGCCATTGACT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTGACT
* * * *
2357525 TGTGGGCTTTTAAAATGATGCCACTAACTTGTGGGCTTTAAAAGGATGCCAATAACT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
2357582 CGTGGGCTTTTGGAATGATGCCACTGACTTGTGGGCTTTAAAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* * * ** ** * ** *
2357640 TGTGGGCTTTGAAAGGATGCTACTGACTTGTGCCACTGACTTG-TGGGCTTTGAAAGGATGCCAC
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTG-GGCT---TTGAAAGG--ATGCCA--CTG--AC
2357704 T
56 T
** * *
2357705 CACT-TGTGGGCTTTAAAAAAATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 ---TGTG-GGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
2357765 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTTAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTGACT
* * * *
2357822 TGTGGGCTTTGAAAAGATGTCATTGACTTGTGGGCTTTTGAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAGGATGCCACTGACT
* * *
2357879 TGTGGGCTTTAAAAAGAATGCCACTGACTTATGGGCTTT
1 TGTGGGCTTTGAAAAG-ATGCCACTAACTTGTGGGCTTT
2357918 AAAAAGGGTC
Statistics
Matches: 461, Mismatches: 73, Indels: 57
0.78 0.12 0.10
Matches are distributed among these distances:
54 9 0.02
55 41 0.09
56 60 0.13
57 200 0.43
58 98 0.21
59 5 0.01
60 3 0.01
61 5 0.01
62 2 0.00
63 1 0.00
64 3 0.01
65 6 0.01
66 2 0.00
67 2 0.00
68 10 0.02
69 14 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (56 bp):
TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:2357686 original size:41 final size:41
Alignment explanation
Indices: 2357629--2357712 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
2357619 TTAAAAAGGA
* *
2357629 TGCCACTAACTTGTGGGCTTTGAAAGGATGCTACTGACTTG
1 TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTCACTTG
*
2357670 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTCACTTG
1 TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTCACTTG
2357711 TG
1 TG
2357713 GGCTTTAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.31
Consensus pattern (41 bp):
TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTCACTTG
Found at i:2357710 original size:28 final size:28
Alignment explanation
Indices: 2357670--2357917 Score: 343
Period size: 28 Copynumber: 8.8 Consensus size: 28
2357660 TACTGACTTG
2357670 TGCCACTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* * **
2357698 TGCCACTCACTTGTGGGCTTTAAAAAAA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
*
2357726 TGCCACTAACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
*
2357754 TGCCACTGACTTGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
*
2357782 TGCCACTGACTTGTGGGCTTTTAAAAGGA
1 TGCCACTGACTTGTGGGC-TTTGAAAGGA
*
2357811 TGCCACTGACTTGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* *
2357839 TGTCATTGACTTGTGGGCTTTTGAAAGGA
1 TGCCACTGACTTGTGGGC-TTTGAAAGGA
* * *
2357868 TGCCATTGACTTGTGGGCTTTAAAAAGAA
1 TGCCACTGACTTGTGGGCTTT-GAAAGGA
*
2357897 TGCCACTGACTTATGGGCTTT
1 TGCCACTGACTTGTGGGCTTT
2357918 AAAAAGGGTC
Statistics
Matches: 195, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
28 119 0.61
29 76 0.39
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGA
Found at i:2357738 original size:69 final size:70
Alignment explanation
Indices: 2357600--2357740 Score: 212
Period size: 69 Copynumber: 2.0 Consensus size: 70
2357590 TTTGGAATGA
* ** * *
2357600 TGCCACTGACTTGTGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCTACTG
1 TGCCACTGACTTGTGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTAAAAAAATGCCACTA
2357665 ACTTG
66 ACTTG
* *
2357670 TGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTCACTTGTGGGCTTTAAAAAAATGCCACTA
1 TGCCACTGACTTGTGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTAAAAAAATGCCACTA
2357734 ACTTG
66 ACTTG
2357739 TG
1 TG
2357741 GGCTTTGAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
69 43 0.67
70 21 0.33
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (70 bp):
TGCCACTGACTTGTGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTAAAAAAATGCCACTA
ACTTG
Found at i:2359228 original size:1 final size:1
Alignment explanation
Indices: 2359213--2359293 Score: 54
Period size: 1 Copynumber: 81.0 Consensus size: 1
2359203 TAGACCCTTC
* * * * * ** * * **
2359213 TTTTTTGTTTGTTTTTTTTTGTTTTTTTTTTCTGTTTTTTTTTGGTTTTTTTGTTTTGTTTTTGG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
2359278 TTTTTTTATTTTTTTT
1 TTTTTTTTTTTTTTTT
2359294 GGCACAAAGG
Statistics
Matches: 60, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.01, C:0.01, G:0.12, T:0.85
Consensus pattern (1 bp):
T
Found at i:2359229 original size:11 final size:11
Alignment explanation
Indices: 2359213--2359284 Score: 60
Period size: 12 Copynumber: 6.4 Consensus size: 11
2359203 TAGACCCTTC
2359213 TTTTTTGTTTG
1 TTTTTTGTTTG
2359224 TTTTTT-TTTG
1 TTTTTTGTTTG
*
2359234 TTTTTTTTTTCTG
1 -TTTTTTGTT-TG
2359247 TTTTTT-TTTGG
1 TTTTTTGTTT-G
2359258 TTTTTTTGTTTTG
1 -TTTTTTG-TTTG
*
2359271 TTTTTGGTTT-
1 TTTTTTGTTTG
2359281 TTTT
1 TTTT
2359285 ATTTTTTTTG
Statistics
Matches: 53, Mismatches: 1, Indels: 15
0.77 0.01 0.22
Matches are distributed among these distances:
10 9 0.17
11 18 0.34
12 20 0.38
13 3 0.06
14 3 0.06
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (11 bp):
TTTTTTGTTTG
Found at i:2359233 original size:10 final size:10
Alignment explanation
Indices: 2359213--2359293 Score: 76
Period size: 11 Copynumber: 7.6 Consensus size: 10
2359203 TAGACCCTTC
2359213 TTTTTTGTTTG
1 TTTTTT-TTTG
2359224 TTTTTTTTTG
1 TTTTTTTTTG
2359234 TTTTTTTTTTCTG
1 --TTTTTTTT-TG
2359247 TTTTTTTTTG
1 TTTTTTTTTG
*
2359257 -GTTTTTTTG
1 TTTTTTTTTG
2359266 TTTTGTTTTTGG
1 TTTT-TTTTT-G
2359278 TTTTTTTATT-
1 TTTTTTT-TTG
2359288 TTTTTT
1 TTTTTT
2359294 GGCACAAAGG
Statistics
Matches: 61, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
9 8 0.13
10 14 0.23
11 22 0.36
12 15 0.25
13 2 0.03
ACGTcount: A:0.01, C:0.01, G:0.12, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:2359237 original size:20 final size:19
Alignment explanation
Indices: 2359213--2359293 Score: 89
Period size: 20 Copynumber: 4.3 Consensus size: 19
2359203 TAGACCCTTC
2359213 TTTTTT-GTTTGTTTT-TTT
1 TTTTTTGGTTT-TTTTGTTT
2359231 TTGTTTT--TTTTTTCTGTTT
1 TT-TTTTGGTTTTTT-TGTTT
2359250 TTTTTTGGTTTTTTTGTTT
1 TTTTTTGGTTTTTTTGTTT
*
2359269 TGTTTTTGGTTTTTTTATTT
1 T-TTTTTGGTTTTTTTGTTT
2359289 TTTTT
1 TTTTT
2359294 GGCACAAAGG
Statistics
Matches: 56, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
17 3 0.05
18 10 0.18
19 19 0.34
20 24 0.43
ACGTcount: A:0.01, C:0.01, G:0.12, T:0.85
Consensus pattern (19 bp):
TTTTTTGGTTTTTTTGTTT
Found at i:2359251 original size:24 final size:23
Alignment explanation
Indices: 2359213--2359294 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 23
2359203 TAGACCCTTC
*
2359213 TTTTTTGTTTG-TTTTTTTTTGT
1 TTTTTTTTTTGTTTTTTTTTTGT
*
2359235 TTTTTTTTTCTGTTTTTTTTTGGT
1 TTTTTTTTT-TGTTTTTTTTTTGT
2359259 TTTTTTGTTTTGTTTTTGGTTTTT-T
1 TTTTTT-TTTTGTTTTT--TTTTTGT
*
2359284 TATTTTTTTTG
1 TTTTTTTTTTG
2359295 GCACAAAGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
22 8 0.16
23 2 0.04
24 28 0.55
25 9 0.18
26 4 0.08
ACGTcount: A:0.01, C:0.01, G:0.13, T:0.84
Consensus pattern (23 bp):
TTTTTTTTTTGTTTTTTTTTTGT
Found at i:2361706 original size:33 final size:33
Alignment explanation
Indices: 2361663--2361727 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
2361653 TTTGAAGCAA
* *
2361663 TGTATCGATACAATTTATCATGTATCGATACAT
1 TGTATCGATACAATGTACCATGTATCGATACAT
* *
2361696 TGTATTGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
2361728 AACAGTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:2361796 original size:13 final size:13
Alignment explanation
Indices: 2361778--2361804 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2361768 ACAATTGTGC
2361778 ATGTATCGATACA
1 ATGTATCGATACA
2361791 ATGTATCGATACA
1 ATGTATCGATACA
2361804 A
1 A
2361805 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2368829 original size:3 final size:3
Alignment explanation
Indices: 2368821--2368856 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
2368811 TCCGAGTCAA
*
2368821 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
2368857 TTTCTTTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.36
Consensus pattern (3 bp):
CAT
Found at i:2375219 original size:15 final size:15
Alignment explanation
Indices: 2375177--2375224 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
2375167 GCAGCGTATC
2375177 GATGATTTTGTGGTG
1 GATGATTTTGTGGTG
* * **
2375192 GGTAATTAGGTGGTG
1 GATGATTTTGTGGTG
*
2375207 GATGATTTTGTGGCG
1 GATGATTTTGTGGTG
2375222 GAT
1 GAT
2375225 TTGGCGAAAT
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.02, G:0.42, T:0.40
Consensus pattern (15 bp):
GATGATTTTGTGGTG
Found at i:2380391 original size:16 final size:17
Alignment explanation
Indices: 2380364--2380396 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2380354 CATTGGTTTC
*
2380364 ATTAGTTTCAACTTGAT
1 ATTAGTTTCAACATGAT
2380381 ATTAG-TTCAACATGAT
1 ATTAGTTTCAACATGAT
2380397 CCCTTTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (17 bp):
ATTAGTTTCAACATGAT
Found at i:2381006 original size:98 final size:98
Alignment explanation
Indices: 2380867--2381089 Score: 304
Period size: 98 Copynumber: 2.3 Consensus size: 98
2380857 ATTGAAAAAC
* ** * * *
2380867 GGGGTTGGAGTATCTCTTCGGAGGAATAGGATTGGAGTGTCCCTGATGATGACAATTTAAGTGAG
1 GGGGTTGGAGTATCCCTTCGGAGGAATAGGATTAAAATGTCCCCGATGATGACAATTTAAGTGAA
2380932 AATAAAATTTAAACTTTGATGCGTTTAAAAGCA
66 AATAAAATTTAAACTTTGATGCGTTTAAAAGCA
* * *
2380965 GGGGTTGGAGTATCCCTTCGGAGGAATGGGGTTAAAATGTCCCCGATGGTGACAATTTAAGTGAA
1 GGGGTTGGAGTATCCCTTCGGAGGAATAGGATTAAAATGTCCCCGATGATGACAATTTAAGTGAA
* **
2381030 AATAAGATTTAAACTTTGATGTTTTTAAAAGCA
66 AATAAAATTTAAACTTTGATGCGTTTAAAAGCA
* * *
2381063 -GGGTTGGAGTGTCCCCTCAGAGGAATA
1 GGGGTTGGAGTATCCCTTCGGAGGAATA
2381090 TGGTTGGAGT
Statistics
Matches: 109, Mismatches: 16, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
97 23 0.21
98 86 0.79
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (98 bp):
GGGGTTGGAGTATCCCTTCGGAGGAATAGGATTAAAATGTCCCCGATGATGACAATTTAAGTGAA
AATAAAATTTAAACTTTGATGCGTTTAAAAGCA
Found at i:2382831 original size:12 final size:12
Alignment explanation
Indices: 2382816--2382864 Score: 57
Period size: 11 Copynumber: 4.2 Consensus size: 12
2382806 TCAGTTTCGA
2382816 TTTCTTCTCTCT
1 TTTCTTCTCTCT
2382828 TTTCTT-TCTCT
1 TTTCTTCTCTCT
* *
2382839 TTTTTTTTCTCT
1 TTTCTTCTCTCT
*
2382851 TTT-TTCTTTCT
1 TTTCTTCTCTCT
2382862 TTT
1 TTT
2382865 TTTTAGTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
11 19 0.58
12 14 0.42
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTCTTCTCTCT
Found at i:2382838 original size:13 final size:12
Alignment explanation
Indices: 2382816--2382866 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
2382806 TCAGTTTCGA
2382816 TTTC-TTCTCTCT
1 TTTCTTTCTCT-T
2382828 TTTCTTTCTCTT
1 TTTCTTTCTCTT
*
2382840 TTTTTTTCTCTTT
1 TTTCTTTCTC-TT
2382853 TTTCTTTCT-TT
1 TTTCTTTCTCTT
2382864 TTT
1 TTT
2382867 TTAGTTGAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
11 5 0.14
12 14 0.40
13 16 0.46
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTCTTTCTCTT
Found at i:2382848 original size:25 final size:24
Alignment explanation
Indices: 2382820--2382868 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
2382810 TTTCGATTTC
2382820 TTCTCTCTTTTCTTTCTCTTTTTTT
1 TTCTCTCTTTTCTTTCT-TTTTTTT
*
2382845 TTCTCTTTTTTCTTTCTTTTTTTT
1 TTCTCTCTTTTCTTTCTTTTTTTT
2382869 AGTTGAACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (24 bp):
TTCTCTCTTTTCTTTCTTTTTTTT
Found at i:2382849 original size:23 final size:23
Alignment explanation
Indices: 2382823--2382868 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
2382813 CGATTTCTTC
2382823 TCTCTTTTCTT-TCTCTTTTTTTT
1 TCTCTTTT-TTCTCTCTTTTTTTT
*
2382846 TCTCTTTTTTCTTTCTTTTTTTT
1 TCTCTTTTTTCTCTCTTTTTTTT
2382869 AGTTGAACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (23 bp):
TCTCTTTTTTCTCTCTTTTTTTT
Found at i:2382854 original size:11 final size:11
Alignment explanation
Indices: 2382823--2382868 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
2382813 CGATTTCTTC
*
2382823 TCTCTTTTCTT
1 TCTCTTTTTTT
2382834 TCTCTTTTTTTT
1 TCTC-TTTTTTT
2382846 TCTCTTTTTTCT
1 TCTCTTTTTT-T
2382858 T-TCTTTTTTT
1 TCTCTTTTTTT
2382868 T
1 T
2382869 AGTTGAACCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
10 2 0.06
11 18 0.56
12 12 0.38
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TCTCTTTTTTT
Found at i:2382868 original size:13 final size:13
Alignment explanation
Indices: 2382816--2382867 Score: 74
Period size: 12 Copynumber: 4.2 Consensus size: 13
2382806 TCAGTTTCGA
*
2382816 TTTC-TTCTCTCT
1 TTTCTTTCTCTTT
2382828 TTTCTTTCTCTTT
1 TTTCTTTCTCTTT
2382841 TTT-TTTCTCTTT
1 TTTCTTTCTCTTT
2382853 TTTCTTTCT-TTT
1 TTTCTTTCTCTTT
2382865 TTT
1 TTT
2382868 TAGTTGAACC
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
12 22 0.59
13 15 0.41
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTTCTCTTT
Found at i:2384335 original size:51 final size:52
Alignment explanation
Indices: 2384259--2384395 Score: 195
Period size: 52 Copynumber: 2.7 Consensus size: 52
2384249 TTTTAACTAG
* * * *
2384259 ATGTATCGAAACATTGTAGAATGTATCGATACATCTGGGT-AAAAAGACATA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAAGACATA
*
2384310 ATGTATCGATACATTGAAAAATGTATCAATACATCTAGGTAAAAAAGACATA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAAGACATA
* * *
2384362 ATATATCGATATATTGAAAAATATATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACAT
2384396 TTATACATCT
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
51 35 0.46
52 41 0.54
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (52 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAAGACATA
Found at i:2386121 original size:32 final size:31
Alignment explanation
Indices: 2386069--2386300 Score: 161
Period size: 28 Copynumber: 7.9 Consensus size: 31
2386059 TCAGCGACAT
* *
2386069 TGGG-TTTAGAAAGGTTGCCACCAATTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTATG
*
2386099 TGGGCTTTAGAGAAGGATGCCACCAACTTATG
1 TGGGCTTTAGA-AAGGTTGCCACCAACTTATG
**
2386131 TGGGCTTTAGAAAGGTTGCCACTGAC-T-TG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTATG
*** * *
2386160 TGGGCTTTA-AAATAATGCCACTAA-TT-TT
1 TGGGCTTTAGAAAGGTTGCCACCAACTTATG
* * *
2386188 TGGGC-TTCGAAAGGGTGCCACTAAC-T-TG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTATG
* * *
2386216 TGGGC-TTCGAAAGGGTGCCACTAAC-T-TG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTATG
* **
2386244 TGGGCTTTA-AAAGGGTGCCACTGAC-T-TG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTATG
*
2386272 TGGGCTTTGAGAAAGGTTGCCACCTACTT
1 TGGGCTTT-AGAAAGGTTGCCACCAACTT
2386301 GTGTAGGCCT
Statistics
Matches: 172, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
27 2 0.01
28 91 0.53
29 14 0.08
30 18 0.10
31 19 0.11
32 28 0.16
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (31 bp):
TGGGCTTTAGAAAGGTTGCCACCAACTTATG
Found at i:2386478 original size:28 final size:28
Alignment explanation
Indices: 2386097--2386481 Score: 373
Period size: 28 Copynumber: 13.5 Consensus size: 28
2386087 CACCAATTTG
*
2386097 TGTGGGCTTTAGAGAAGGATGCCACCAACTT
1 TGTGGGCTTT-GA-AAGGATGCCACTAAC-T
* *
2386128 ATGTGGGCTTTAGAAAGGTTGCCACTGACT
1 -TGTGGGCTTT-GAAAGGATGCCACTAACT
* ** *
2386158 TGTGGGCTTTAAAATAATGCCACTAATT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
2386186 TTTGGGCTTCGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
2386214 TGTGGGCTTCGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* * *
2386242 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
2386270 TGTGGGCTTTGAGAAAGGTTGCCACCT-ACT
1 TGTGGGCTTT--GAAAGGATGCCA-CTAACT
* *
2386300 TGTGTAGGC-CT-AAAGAGGTGCCACTAACT
1 TGTG--GGCTTTGAAAG-GATGCCACTAACT
* ** *
2386329 TGTGAGCTGGGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
2386357 TGTGGACTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
* *
2386385 TGTGGGCTTTGAAAGAATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
*
2386413 TGTGGGCTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTAACT
* *
2386441 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTAACT
2386469 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
2386482 GAGATGAACA
Statistics
Matches: 303, Mismatches: 39, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
27 5 0.02
28 220 0.73
29 29 0.10
30 18 0.06
31 15 0.05
32 16 0.05
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTAACT
Found at i:2405464 original size:79 final size:79
Alignment explanation
Indices: 2405151--2405660 Score: 419
Period size: 79 Copynumber: 6.5 Consensus size: 79
2405141 CCCCGAGATA
* * * * ** *
2405151 AAAAATCTAATATTTTGGAAGTGAAAATGGGGTTGAAGTATCCCCTCAGAAAT--GGA-GTTGGA
1 AAAAAT-TGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTAGA
* *
2405213 GTAT-CCTCGA-GATA
65 GTATCCCT-GATGGTG
* * * * ** * * * ***
2405227 AAAAATTTAATCTTTTGGAAGTGAAAGCGGGGTTGGAGTATCCCCTCGGAAGTGATGGGGTTAGA
1 AAAAA-TTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTAGA
*
2405292 GTAT-CTTGATGGTG
65 GTATCCCTGATGGTG
* * ** * *
2405306 AAAAATCGATATTTTGGAAAT-AAAATGGGGTTGGAGTATCCCCTCGGAAATAATGAGATTGGAG
1 AAAAATTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTAGAG
* *
2405370 TATCCCCGATTGTG
66 TATCCCTGATGGTG
** * ** * *
2405384 AAAAATCAATATTTTGGAAATAAAAACGGGGTTGGAGTATTTCCTCAGAAAGAACAAGGTTGGAG
1 AAAAATTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTAGAG
* *
2405449 TATCCCTAATAGTG
66 TATCCCTGATGGTG
* * *** * *
2405463 AAAATTTGATATTTTGAAAATAAAAACAAGGTTGGAGTATCCCCTC-GAAAATAACAGGGTTAAA
1 AAAAATTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAG-AAATAACAAGGTTAGA
2405527 GTAT-CCTCGATGGTG
65 GTATCCCT-GATGGTG
** * * *
2405542 AAATTTTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAGATATAATAGGGTTAGAG
1 AAAAATTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTAGAG
2405607 TATCCCTGATGGT-
66 TATCCCTGATGGTG
* *
2405620 AAAAACTTGATATTTTGGAAATAAAAATAGGGTTAGAGTAT
1 AAAAA-TTGATATTTTGGAAATAAAAATGGGGTTGGAGTAT
2405661 TCTCGATGGT
Statistics
Matches: 358, Mismatches: 64, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
76 45 0.13
77 40 0.11
78 49 0.14
79 220 0.61
80 4 0.01
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (79 bp):
AAAAATTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTAGAG
TATCCCTGATGGTG
Found at i:2405670 original size:51 final size:51
Alignment explanation
Indices: 2405594--2405697 Score: 149
Period size: 51 Copynumber: 2.0 Consensus size: 51
2405584 CCTCAGATAT
2405594 AATAGGGTTAGAGTATCCCTGATGG-TAAAAACTTGATATTTTGGAAATAAA
1 AATAGGGTTAGAGTATCCCTGATGGTTAAAAA-TTGATATTTTGGAAATAAA
* * *
2405645 AATAGGGTTAGAGTAT-TCTCGATGGTTGAAAATTGATATTTTGGAAGTAAA
1 AATAGGGTTAGAGTATCCCT-GATGGTTAAAAATTGATATTTTGGAAATAAA
2405696 AA
1 AA
2405698 CGAAGTTGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
50 2 0.04
51 41 0.85
52 5 0.10
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (51 bp):
AATAGGGTTAGAGTATCCCTGATGGTTAAAAATTGATATTTTGGAAATAAA
Found at i:2405777 original size:134 final size:130
Alignment explanation
Indices: 2405518--2405779 Score: 330
Period size: 134 Copynumber: 2.0 Consensus size: 130
2405508 CGAAAATAAC
* * *
2405518 AGGGTTAAAGTATCCTCGATGGTGAAATTTTGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
1 AGGGTTAAAGTATCCTCGATGGTGAAATATTGATATTTTGGAAATAAAAACGGGGTTAGAGTATC
* *
2405583 CCCTCAGATATAATAGGGTTAGAGTATCCCTGATGGTAAAAACTTGATATTTTGGAAATAAAAAT
66 CCCTCAGACATAACAGGGTTAGAGTATCCCTGATGGTAAAAACTTGATATTTTGGAAATAAAAAT
* * *
2405648 AGGGTTAGAGTATTCTCGATGGTTGAAA-ATTGATATTTTGGAAGTAAAAACGAAGTTGGTTAGA
1 AGGGTTAAAGTATCCTCGATGG-TGAAATATTGATATTTTGGAAATAAAAACG--G--GGTTAGA
** ** * *
2405712 GTATCTTCTTGGACATAACAGGGTTGGAGTATCCTTGATGGTGAAAAA-TTGATATTTTGGAAAT
61 GTATCCCCTCAGACATAACAGGGTTAGAGTATCCCTGATGGT-AAAAACTTGATATTTTGGAAAT
2405776 AAAA
125 AAAA
2405780 GTGAGGTTGG
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
130 41 0.37
131 5 0.04
132 1 0.01
134 60 0.54
135 5 0.04
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (130 bp):
AGGGTTAAAGTATCCTCGATGGTGAAATATTGATATTTTGGAAATAAAAACGGGGTTAGAGTATC
CCCTCAGACATAACAGGGTTAGAGTATCCCTGATGGTAAAAACTTGATATTTTGGAAATAAAAAT
Found at i:2405789 original size:83 final size:79
Alignment explanation
Indices: 2405648--2405915 Score: 236
Period size: 83 Copynumber: 3.4 Consensus size: 79
2405638 AAATAAAAAT
* *
2405648 AGGGTTAGAGTATTCTCGATGGTTG-AAAATTGATATTTTGGAAGTAAAAACGAAGTTGGTTAGA
1 AGGGTTAGAGTATCCTCGATGG-TGAAAAATTGATATTTTGGAAATAAAAACGAAGTT-G---GA
* *** *
2405712 GTATCTTCTTGGACATAAC
61 GTATCTCCTCAAAAATAAC
* * ** *
2405731 AGGGTTGGAGTATCCTTGATGGTGAAAAATTGATATTTTGGAAATAAAAGTGAGGTTGGAGTATC
1 AGGGTTAGAGTATCCTCGATGGTGAAAAATTGATATTTTGGAAATAAAAACGAAGTTGGAGTATC
2405796 TCCTCAAAAATAAC
66 TCCTCAAAAATAAC
* * ** ** *
2405810 AAGGTTAGAGTATCCTCGA-GATGAAAAATTGATATTTTAAAAAT-AAAACGGGGTTAGAGTATC
1 AGGGTTAGAGTATCCTCGATGGTGAAAAATTGATATTTTGGAAATAAAAACGAAGTTGGAGTATC
* * *
2405873 TCCTCGAAAATCAT
66 TCCTCAAAAATAAC
* * * *
2405887 AGGGTTGGAGTATCCCCAATGGTAAAAAA
1 AGGGTTAGAGTATCCTCGATGGTGAAAAA
2405916 AAATTTATAA
Statistics
Matches: 152, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
77 41 0.27
78 29 0.19
79 32 0.21
82 3 0.02
83 47 0.31
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (79 bp):
AGGGTTAGAGTATCCTCGATGGTGAAAAATTGATATTTTGGAAATAAAAACGAAGTTGGAGTATC
TCCTCAAAAATAAC
Found at i:2405901 original size:77 final size:79
Alignment explanation
Indices: 2405726--2405901 Score: 232
Period size: 77 Copynumber: 2.3 Consensus size: 79
2405716 CTTCTTGGAC
* * ** *
2405726 ATAACAGGGTTGGAGTATCCTTGATGGTGAAAAATTGATATTTTGGAAATAAAAGTGAGGTTGGA
1 ATAACAGGGTTGGAGTATCCTCGATGATGAAAAATTGATATTTTAAAAATAAAAGTGAGGTTAGA
2405791 GTATCTCCTCAAAA
66 GTATCTCCTCAAAA
* *
2405805 ATAACAAGGTTAGAGTATCCTCGA-GATGAAAAATTGATATTTTAAAAATAAAACG-G-GGTTAG
1 ATAACAGGGTTGGAGTATCCTCGATGATGAAAAATTGATATTTTAAAAATAAAA-GTGAGGTTAG
*
2405867 AGTATCTCCTCGAAA
65 AGTATCTCCTCAAAA
* *
2405882 ATCATAGGGTTGGAGTATCC
1 ATAACAGGGTTGGAGTATCC
2405902 CCAATGGTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
77 35 0.42
78 27 0.32
79 22 0.26
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (79 bp):
ATAACAGGGTTGGAGTATCCTCGATGATGAAAAATTGATATTTTAAAAATAAAAGTGAGGTTAGA
GTATCTCCTCAAAA
Done.