Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1662
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87690
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:601 original size:15 final size:15
Alignment explanation
Indices: 581--612 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
571 GCAGCAAAGA
581 AAGCAAGCATTCAGG
1 AAGCAAGCATTCAGG
596 AAGCAAGCATTCAGG
1 AAGCAAGCATTCAGG
611 AA
1 AA
613 TAGAATAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.12
Consensus pattern (15 bp):
AAGCAAGCATTCAGG
Found at i:4697 original size:1 final size:1
Alignment explanation
Indices: 4691--4801 Score: 87
Period size: 1 Copynumber: 111.0 Consensus size: 1
4681 GGCGTCCTCC
** ** ** **
4691 AAAAAAAAAAAAAACGAAAAAAAAATGAAAAACCAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * *
4756 AAAAAAAAACAACAAAAACAATAAAAAAACAAACAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4802 GGGGGTCCGG
Statistics
Matches: 86, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 86 1.00
ACGTcount: A:0.86, C:0.08, G:0.04, T:0.02
Consensus pattern (1 bp):
A
Found at i:4732 original size:31 final size:29
Alignment explanation
Indices: 4694--4801 Score: 114
Period size: 29 Copynumber: 3.6 Consensus size: 29
4684 GTCCTCCAAA
4694 AAAAAAAAAAACGAAAAAAAAATGAAAAACC
1 AAAAAAAAAAAC-AAAAAAAAATGAAAAA-C
* *
4725 AAAAAAAAAAAAAAAAAAAAAAGGAAAAA-
1 -AAAAAAAAAAACAAAAAAAAATGAAAAAC
4754 AAAAAAAAAAACAACAAAAACAAT-AAAAA-
1 AAAAAAAAAAACAA-AAAAA-AATGAAAAAC
*
4783 AACAAACAAAAACAAAAAA
1 AA-AAAAAAAAACAAAAAA
4802 GGGGGTCCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
28 13 0.19
29 16 0.24
30 13 0.19
31 15 0.22
32 11 0.16
ACGTcount: A:0.86, C:0.08, G:0.04, T:0.02
Consensus pattern (29 bp):
AAAAAAAAAAACAAAAAAAAATGAAAAAC
Found at i:4752 original size:42 final size:45
Alignment explanation
Indices: 4691--4801 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 45
4681 GGCGTCCTCC
**
4691 AAAAAAAAAAAAAACGAAAAAAAAATGAAAAAC-CAAAAA-AA-A
1 AAAAAAAAAAAAAACGAAAAAAAAAAAAAAAACACAAAAACAATA
*
4733 AAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAACAACAAAAACAATA
1 AAAAAAAAAAAAAACGAAAAAAAAAAAAAAAAC-ACAAAAACAATA
4779 AAAAAACAAACAAAAAC-AAAAAA
1 AAAAAA-AAA-AAAAACGAAAAAA
4802 GGGGGTCCGG
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
42 30 0.51
44 6 0.10
45 2 0.03
46 7 0.12
47 9 0.15
48 5 0.08
ACGTcount: A:0.86, C:0.08, G:0.04, T:0.02
Consensus pattern (45 bp):
AAAAAAAAAAAAAACGAAAAAAAAAAAAAAAACACAAAAACAATA
Found at i:6272 original size:30 final size:30
Alignment explanation
Indices: 6236--6545 Score: 370
Period size: 30 Copynumber: 10.6 Consensus size: 30
6226 ATTCATCACC
* *
6236 TTTCAAAAGTCCACAAGTCAGTGGCATTTT
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
*
6266 TTTC-AAAGCCCACAAGTCAGTGGCATTTT
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
*
6295 TTTCAAAAGCCCACAAGTCAGTGGCA-A-C
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
* * ***
6323 CTTC-AAAGCCCACAAGTTAGTGGCACCCT
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
6352 TTTCAAAAGCCCACAAGTCAGTGGCATATT
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
**
6382 TTTCAAAAGCCCACAAGTCAGTGGCA-ACC
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
6411 TTT-AAAAGCCCACAAGTCAGTGGCATATTT
1 TTTCAAAAGCCCACAAGTCAGTGGCATA-TT
6441 TTTCAAAAGCCCACAAGTCAGTGGCATATT
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
* *
6471 TTTCAAAAGCCCATAAGTCAGTGGCA-A-C
1 TTTCAAAAGCCCACAAGTCAGTGGCATATT
* * **
6499 CTTC-AAAGCCCACAAATCAGTGGCACCCTT
1 TTTCAAAAGCCCACAAGTCAGTGGCA-TATT
*
6529 TTTC-GAAGCCCACAAGT
1 TTTCAAAAGCCCACAAGT
6546 TGGTGGCACC
Statistics
Matches: 244, Mismatches: 26, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
27 39 0.16
28 28 0.11
29 37 0.15
30 116 0.48
31 24 0.10
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (30 bp):
TTTCAAAAGCCCACAAGTCAGTGGCATATT
Found at i:6444 original size:146 final size:146
Alignment explanation
Indices: 6236--6558 Score: 415
Period size: 146 Copynumber: 2.2 Consensus size: 146
6226 ATTCATCACC
* *** *
6236 TTTCAAAAGTCCACAAGTCAGTGGCATTTTTTTCAAAGCCCACAAGTCAGTGGCATTTTTTTCAA
1 TTTCAAAAGCCCACAAGTCAGTGGCA-ACCTTTAAAAGCCCACAAGTCAGTGGCATTTTTTTCAA
* *
6301 AAGCCCACAAGTCAGTGGCA-A-CCTTC-AAAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCC
65 AAGCCCACAAGTCAGTGGCATATCCTTCAAAAGCCCACAAGTCAGTGGCAACC--TTC-AAAGCC
* *
6363 CACAAGTCAGTGGCA-TATT
127 CACAAATCAGTGGCACCATT
6382 TTTCAAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCACAAGTCAGTGGCATATTTTTTCAA
1 TTTCAAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCACAAGTCAGTGGCAT-TTTTTTCAA
** *
6447 AAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCCATAAGTCAGTGGCAACCTTCAAAGCCCAC
65 AAGCCCACAAGTCAGTGGCATATCCTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCAC
*
6512 AAATCAGTGGCACCCTT
130 AAATCAGTGGCACCATT
* **
6529 TTTC-GAAGCCCACAAGTTGGTGGC-ACCTTT
1 TTTCAAAAGCCCACAAGTCAGTGGCAACCTTT
6559 TCCATCTTTA
Statistics
Matches: 156, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
145 31 0.20
146 91 0.58
147 10 0.06
148 3 0.02
149 21 0.13
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (146 bp):
TTTCAAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCACAAGTCAGTGGCATTTTTTTCAAA
AGCCCACAAGTCAGTGGCATATCCTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACA
AATCAGTGGCACCATT
Found at i:6553 original size:57 final size:57
Alignment explanation
Indices: 6236--6545 Score: 340
Period size: 57 Copynumber: 5.3 Consensus size: 57
6226 ATTCATCACC
* *** **
6236 TTTCAAAAGTCCACAAGTCAGTGGCATTTTTTTCAAAGCCCACAAGTCAGTGGCATTTT
1 TTTCAAAAGCCCACAAGTCAGTGGCA--ACCTTCAAAGCCCACAAGTCAGTGGCACCTT
* *
6295 TTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAGTCAGTGGCACCTT
**
6352 TTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCCACAAGTCAGTGGCAACC--
1 TTTCAAAAGCCCACAAGTCAGTGGCA-A-CCTTC-AAAGCCCACAAGTCAGTGGC-ACCTT
** **
6411 TTT-AAAAGCCCACAAGTCAGTGGCATATTTTTTCAAAAGCCCACAAGTCAGTGGCATATT
1 TTTCAAAAGCCCACAAGTCAGTGGCA-A--CCTTC-AAAGCCCACAAGTCAGTGGCACCTT
* *
6471 TTTCAAAAGCCCATAAGTCAGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCTT
1 TTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAGTCAGTGGCA-CCTT
*
6529 TTTC-GAAGCCCACAAGT
1 TTTCAAAAGCCCACAAGT
6546 TGGTGGCACC
Statistics
Matches: 221, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
57 81 0.37
58 35 0.16
59 58 0.26
60 23 0.10
61 24 0.11
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (57 bp):
TTTCAAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAGTCAGTGGCACCTT
Found at i:6606 original size:52 final size:52
Alignment explanation
Indices: 6549--6760 Score: 208
Period size: 52 Copynumber: 4.2 Consensus size: 52
6539 CACAAGTTGG
*
6549 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACAT
1 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* *
6601 TGGCA-------C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
6644 TGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * * * * * * * *
6696 TGACATCCTTTTTCTCAGCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATAT
1 TGGCA-CC-TTTTC-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
6751 TGGCATCTTT
1 TGGCACCTTT
6761 ATCACTTTTC
Statistics
Matches: 130, Mismatches: 18, Indels: 23
0.76 0.11 0.13
Matches are distributed among these distances:
43 39 0.30
45 1 0.01
50 1 0.01
52 43 0.33
53 5 0.04
54 6 0.05
55 35 0.27
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (52 bp):
TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
Found at i:6625 original size:43 final size:43
Alignment explanation
Indices: 6564--6653 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
6554 CCTTTTCCAT
*
6564 CTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCAC
* *
6607 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCAC
6650 CTTT
1 CTTT
6654 TCCATCTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCAC
Found at i:6743 original size:55 final size:55
Alignment explanation
Indices: 6607--6989 Score: 280
Period size: 67 Copynumber: 6.7 Consensus size: 55
6597 ACATTGGCAC
*
6607 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * *
6659 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
6714 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
6778 CATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C---TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
6830 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * *
6885 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-C-TTT-T--TC-TC
6950 AT
54 AT
*
6952 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
6990 AGCACCTTCA
Statistics
Matches: 257, Mismatches: 41, Indels: 51
0.74 0.12 0.15
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
52 43 0.17
53 2 0.01
54 7 0.03
55 64 0.25
56 2 0.01
57 2 0.01
58 2 0.01
59 1 0.00
61 8 0.03
62 6 0.02
63 5 0.02
64 6 0.02
66 3 0.01
67 69 0.27
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:6897 original size:171 final size:171
Alignment explanation
Indices: 6607--7001 Score: 664
Period size: 171 Copynumber: 2.3 Consensus size: 171
6597 ACATTGGCAC
*
6607 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTTCAAT
6672 GTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAGCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAGCTTTAAGCCCAATATCGTTGGCC
*
6737 GTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* *
6781 TTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
* * *
6846 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATG
66 GCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAGCTTTAAGCCCAATATCGTTGGCCATG
*
6911 AATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAT
131 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* * *
6952 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTAGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
7002 ATCTCTAAAA
Statistics
Matches: 209, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
171 166 0.79
172 3 0.01
174 40 0.19
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (171 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAGCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
Found at i:8274 original size:13 final size:13
Alignment explanation
Indices: 8256--8280 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8246 CATAAAGTGT
8256 TGTATCGATACAA
1 TGTATCGATACAA
8269 TGTATCGATACA
1 TGTATCGATACA
8281 TGTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:8361 original size:13 final size:13
Alignment explanation
Indices: 8343--8367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8333 ATCACTTAAA
8343 TGTATCGATACAT
1 TGTATCGATACAT
8356 TGTATCGATACA
1 TGTATCGATACA
8368 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:8432 original size:52 final size:52
Alignment explanation
Indices: 8376--8556 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
8366 CACTGATCTT
*
8376 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
8428 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
8480 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
8532 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
8557 TCATATTTCG
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:14886 original size:1 final size:1
Alignment explanation
Indices: 14880--14982 Score: 80
Period size: 1 Copynumber: 103.0 Consensus size: 1
14870 TTTTCTAAAC
* * * * * ** **
14880 AAAAAAAACAAAAACAAAAACAAAAACAAAAAAACAAAAAACCAAAAAAAAAAAAAAACCAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * ** *
14945 AACAAAAAAAAAAAAAGAAAAAAGTAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14983 GAACCTGCTT
Statistics
Matches: 79, Mismatches: 23, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 79 1.00
ACGTcount: A:0.86, C:0.10, G:0.03, T:0.01
Consensus pattern (1 bp):
A
Found at i:14932 original size:33 final size:32
Alignment explanation
Indices: 14882--14967 Score: 122
Period size: 33 Copynumber: 2.7 Consensus size: 32
14872 TTCTAAACAA
14882 AAAAAACAAAAACAAAAACAAAAA-CAAAAAAAC
1 AAAAAACAAAAA-AAAAA-AAAAACCAAAAAAAC
14915 AAAAAACCAAAAAAAAAAAAAAACCAAAAAAAC
1 AAAAAA-CAAAAAAAAAAAAAAACCAAAAAAAC
*
14948 AAAAAA-AAAAAAAGAAAAAA
1 AAAAAACAAAAAAAAAAAAAA
14968 GTAAAAAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
31 13 0.26
32 5 0.10
33 26 0.52
34 6 0.12
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (32 bp):
AAAAAACAAAAAAAAAAAAAAACCAAAAAAAC
Found at i:14949 original size:47 final size:45
Alignment explanation
Indices: 14880--14987 Score: 128
Period size: 47 Copynumber: 2.4 Consensus size: 45
14870 TTTTCTAAAC
* *
14880 AAAAAAAACAAAAA-CAAAAACAAAAACAAAAAAACAAAAAACCA
1 AAAAAAAAAAAAAACCAAAAACAAAAAAAAAAAAACAAAAAACCA
* **
14924 AAAAAAAAAAAAAACCAAAAAAACAAAAAAAAAAAAAGAAAAAAGTA
1 AAAAAAAAAAAAAACC--AAAAACAAAAAAAAAAAAACAAAAAACCA
*
14971 AAAAAAAGAAAAGAACC
1 AAAAAAA-AAAAAAACC
14988 TGCTTAAGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
44 13 0.24
45 1 0.02
47 32 0.59
48 8 0.15
ACGTcount: A:0.84, C:0.11, G:0.04, T:0.01
Consensus pattern (45 bp):
AAAAAAAAAAAAAACCAAAAACAAAAAAAAAAAAACAAAAAACCA
Found at i:14967 original size:8 final size:8
Alignment explanation
Indices: 14876--14960 Score: 100
Period size: 8 Copynumber: 10.2 Consensus size: 8
14866 TCCATTTTCT
14876 AAACAAAAA
1 AAAC-AAAA
14885 AAACAAAA
1 AAACAAAA
*
14893 ACAAAAACAA
1 A-AACAA-AA
14903 AAACAAAA
1 AAACAAAA
14911 AAACAAAA
1 AAACAAAA
*
14919 AACCAAAA
1 AAACAAAA
*
14927 AAAAAAAA
1 AAACAAAA
14935 AAACCAAAA
1 AAA-CAAAA
14944 AAACAAAA
1 AAACAAAA
14952 AAA-AAAA
1 AAACAAAA
14959 AA
1 AA
14961 GAAAAAAGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
7 6 0.09
8 39 0.58
9 19 0.28
10 3 0.04
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (8 bp):
AAACAAAA
Found at i:14973 original size:17 final size:15
Alignment explanation
Indices: 14880--14982 Score: 91
Period size: 16 Copynumber: 6.4 Consensus size: 15
14870 TTTTCTAAAC
14880 AAAAAAAACAAAAACAA
1 AAAAAAAAC-AAAA-AA
14897 AAACAAAAACAAAAAA
1 AAA-AAAAACAAAAAA
*
14913 ACAAAAAACCAAAAAAA
1 A-AAAAAAAC-AAAAAA
14930 AAAAAAAACCAAAAAA
1 AAAAAAAA-CAAAAAA
14946 ACAAAAAAA-AAAAAA
1 A-AAAAAAACAAAAAA
* **
14961 GAAAAAAGTAAAAAA
1 AAAAAAAACAAAAAA
14976 AAGAAAA
1 AA-AAAA
14983 GAACCTGCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
14 6 0.08
15 13 0.18
16 25 0.34
17 24 0.32
18 6 0.08
ACGTcount: A:0.86, C:0.10, G:0.03, T:0.01
Consensus pattern (15 bp):
AAAAAAAACAAAAAA
Found at i:14973 original size:22 final size:22
Alignment explanation
Indices: 14876--14985 Score: 105
Period size: 22 Copynumber: 4.9 Consensus size: 22
14866 TCCATTTTCT
* *
14876 AAACAAAAAAAACAAAA-ACAA
1 AAACAAAAAAAAAAAAAGAAAA
* *
14897 AAACAAAAACAAAAAAACAAAA
1 AAACAAAAAAAAAAAAAGAAAA
* *
14919 AACCAAAAAAAAAAAAAAACCAAAA
1 AA--ACAAAAAAAAAAAAA-GAAAA
14944 AAACAAAAAAAAAAAAAGAAAA
1 AAACAAAAAAAAAAAAAGAAAA
** *
14966 AAGTAAAAAAAAGAAAAGAA
1 AAACAAAAAAAAAAAAAGAA
14986 CCTGCTTAAG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
21 15 0.20
22 26 0.35
23 14 0.19
24 13 0.17
25 7 0.09
ACGTcount: A:0.85, C:0.10, G:0.04, T:0.01
Consensus pattern (22 bp):
AAACAAAAAAAAAAAAAGAAAA
Found at i:16053 original size:61 final size:61
Alignment explanation
Indices: 15954--16291 Score: 477
Period size: 61 Copynumber: 5.6 Consensus size: 61
15944 CCTTTTATCT
* * * *
15954 TTTC-AGTCCTCAAAGAGTAGGA--CATTTTCCTTTCAAAGCCTACACAAGTTGGTGGCAC
1 TTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
16012 CTTCTAGTCCTTAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
1 TTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * *
16073 TTTCCAATCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCGC
1 TTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * *
16134 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAATTGGTGGCGC
1 TTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * *
16195 TTTCTAGTCCTCAAAAAGTAGGATGCCTTTTCCTTTTAAAGTCCACACAAGTTGGTGGCAC
1 TTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
16256 TATC-AGTCCTCAAAGAGCATGACGCATTTTCCTTTT
1 TTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT
16292 CTCTTTTGTC
Statistics
Matches: 250, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
58 3 0.01
59 16 0.06
60 27 0.11
61 204 0.82
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (61 bp):
TTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
Found at i:16431 original size:44 final size:44
Alignment explanation
Indices: 16358--16714 Score: 221
Period size: 44 Copynumber: 8.3 Consensus size: 44
16348 TGGCACCTTC
* * * * *
16358 TAGTCTTCAAAGAGCAGGGCGCACCTTATTTTGTTATTTTCCCT
1 TAGTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTTTCCCT
* * * *
16402 TAGTCCTCAAAGAGTAGGACGTACTTTA-TTTC--CTTTTTCAT
1 TAGTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTTTCCCT
* * * * *
16443 TTGTCCTCAAAGAGCCAAG-CGCACCTCATTTCCTTCTTTTCCCT
1 TAGTCCTCAAAGAG-CAGGACGCACTTTATTTTCTTCTTTTCCCT
*
16487 TAGTCCTCAAAAAGCAGGACG----TT-TTTTC--CTTTTCTCCT
1 TAGTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTTTC-CCT
* * * *
16525 TTGTCTTCAAAGAGTAGGACACA-TTTCA-TTTCTTTCTTGTT-CCT
1 TAGTCCTCAAAGAGCAGGACGCACTTT-ATTTTC-TTCTT-TTCCCT
* *
16569 TTGTCCTCAAAGAGCAGGACGCA-TTTCA-TTTCTGTATTTTCTCCTT
1 TAGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCT-TCTTTTC-CC-T
* * *
16615 TA-TCCTCAAAGAGTAGGATGCACTTT-TTTT-TTCCTTTTTCCT
1 TAGTCCTCAAAGAGCAGGACGCACTTTATTTTCTT-CTTTTCCCT
* * * * *
16657 TTGTCCTCAAAGAGCAGGGCACACCTTATTTCCTTCTTTTCCCT
1 TAGTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTTTCCCT
*
16701 TAGTCCTTAAAGAG
1 TAGTCCTCAAAGAG
16715 TAAGATGCTT
Statistics
Matches: 241, Mismatches: 47, Indels: 50
0.71 0.14 0.15
Matches are distributed among these distances:
37 6 0.02
38 19 0.08
39 4 0.02
40 1 0.00
41 27 0.11
42 11 0.05
43 31 0.13
44 107 0.44
45 28 0.12
46 7 0.03
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (44 bp):
TAGTCCTCAAAGAGCAGGACGCACTTTATTTTCTTCTTTTCCCT
Found at i:16507 original size:85 final size:82
Alignment explanation
Indices: 16376--16538 Score: 211
Period size: 85 Copynumber: 2.0 Consensus size: 82
16366 AAAGAGCAGG
* ** * *
16376 GCGCACCTTATTTTGTTATTTTCCCTTAGTCCTCAAAGAGTAGGACGTACTTTATTTCCTTTT-T
1 GCGCACCTCATTTCCTTATTTTCCCTTAGTCCTCAAAAAGCAGGACG---TTT-TTTCCTTTTCT
16440 CATTTGTCCTCAAAGAGCCAA
62 CATTTGTCCTCAAAGAGCCAA
* *
16461 GCGCACCTCATTTCCTTCTTTTCCCTTAGTCCTCAAAAAGCAGGACGTTTTTTCCTTTTCTCCTT
1 GCGCACCTCATTTCCTTATTTTCCCTTAGTCCTCAAAAAGCAGGACGTTTTTTCCTTTTCTCATT
*
16526 TGTCTTCAAAGAG
66 TGTCCTCAAAGAG
16539 TAGGACACAT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
81 9 0.13
82 19 0.28
85 41 0.59
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.40
Consensus pattern (82 bp):
GCGCACCTCATTTCCTTATTTTCCCTTAGTCCTCAAAAAGCAGGACGTTTTTTCCTTTTCTCATT
TGTCCTCAAAGAGCCAA
Found at i:16562 original size:82 final size:83
Alignment explanation
Indices: 16394--16600 Score: 224
Period size: 82 Copynumber: 2.5 Consensus size: 83
16384 TATTTTGTTA
*
16394 TTTTCCCTTAGTCCTCAAAGAGTAGGACGTACTTTATTTCCTTTTTCATTTGTCCTCAAAGAGCC
1 TTTTCCCTTAGTCCTCAAAGAGCAGGACG-A-TTTATTTCCTTTTTCATTTGTCCTCAAAGAGCC
*
16459 AAGCGCACCTCATTTCCTTC
64 AAGCACACCTCATTTCCTTC
* * * *
16479 TTTTCCCTTAGTCCTCAAAAAGCAGGACG-TTT-TTTCCTTTTCTCCTTTGTCTTCAAAGAG-TA
1 TTTTCCCTTAGTCCTCAAAGAGCAGGACGATTTATTTCCTTTT-TCATTTGTCCTCAAAGAGCCA
* ** *
16541 GGACACATTTCATTTCTTTC
65 AG-CACACCTCATTTCCTTC
*
16561 TTGTT-CCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTC
1 TT-TTCCCTTAGTCCTCAAAGAGCAGGACG-ATTT-ATTTC
16601 TGTATTTTCT
Statistics
Matches: 103, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
81 11 0.11
82 56 0.54
83 2 0.02
84 3 0.03
85 27 0.26
86 4 0.04
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (83 bp):
TTTTCCCTTAGTCCTCAAAGAGCAGGACGATTTATTTCCTTTTTCATTTGTCCTCAAAGAGCCAA
GCACACCTCATTTCCTTC
Found at i:16609 original size:126 final size:122
Alignment explanation
Indices: 16394--16624 Score: 265
Period size: 126 Copynumber: 1.9 Consensus size: 122
16384 TATTTTGTTA
*
16394 TTTTCCCTTAGTCCTCAAAGAGTAGGACGTACTTTATTTCCTTTTTCATTTGTCCTCAAAGAGCC
1 TTTTCCCTTAGTCCTCAAAGAGTAGGACG-ACTTTATTTCCTTGTTCATTTGTCCTCAAAGAGCC
*
16459 AAGCGCACCTCATTTCCTTCTTTTC-CC-TTAGTCCTCAAAAAGCAGGACGTTTTTTCC
65 AAGCGCACCTCATTTCCTTATTTTCTCCTTTA-TCCTCAAAAAGCAGGACGTTTTTTCC
* * *
16516 TTTTCTCCTTTGTCTTCAAAGAGTAGGAC-ACATTTCATTTCTTTCTTGTTCCTTTGTCCTCAAA
1 TTTTC-CCTTAGTCCTCAAAGAGTAGGACGAC-TTT-ATTTC---CTTGTTCATTTGTCCTCAAA
* **
16580 GAG-CAGGACGCATTTCATTT-CTGTATTTTCTCCTTTATCCTCAAA
60 GAGCCAAG-CGCACCTCATTTCCT-TATTTTCTCCTTTATCCTCAAA
16625 GAGTAGGATG
Statistics
Matches: 91, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
121 2 0.02
122 8 0.09
123 26 0.29
125 5 0.05
126 37 0.41
127 10 0.11
128 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.41
Consensus pattern (122 bp):
TTTTCCCTTAGTCCTCAAAGAGTAGGACGACTTTATTTCCTTGTTCATTTGTCCTCAAAGAGCCA
AGCGCACCTCATTTCCTTATTTTCTCCTTTATCCTCAAAAAGCAGGACGTTTTTTCC
Found at i:16627 original size:45 final size:44
Alignment explanation
Indices: 16515--16797 Score: 203
Period size: 44 Copynumber: 6.6 Consensus size: 44
16505 ACGTTTTTTC
* * *
16515 CTTTTCTCCTTTGTCTTCAAAGAGTAGGACACATTTCATTTCTTT
1 CTTTT-TCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTTT
* *
16560 CTTGTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTGT
1 CTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTTT
* * * *
16604 ATTTTCTCCTTTATCCTCAAAGAGTAGGATGCACTTT--TTT-TTT
1 CTTTT-TCCTTTGTCCTCAAAGAGCAGGACGCA-TTTCATTTCTTT
* * * *
16647 CCTTTTTCCTTTGTCCTCAAAGAGCAGGGCACACCTT-ATTTCCTT
1 -CTTTTTCCTTTGTCCTCAAAGAGCAGGACGCA-TTTCATTTCTTT
* * * * * *
16692 CTTTTCCCTTAGTCCTTAAAGAGTA--A-G-A-TGC-TTT-TTC
1 CTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTTT
* * * * *
16729 CTTTTCTCTTTTGTCCTCAAAAAGCAAGACACATTTTATTTCTTT
1 CTTTT-TCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTTT
*
16774 -ATTTTCCTTTGTCCTCAAAGAGCA
1 CTTTTTCCTTTGTCCTCAAAGAGCA
16798 AGACTCCCCT
Statistics
Matches: 183, Mismatches: 41, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
37 6 0.03
38 18 0.10
40 2 0.01
42 1 0.01
43 46 0.25
44 75 0.41
45 32 0.17
46 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (44 bp):
CTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTTT
Found at i:16728 original size:81 final size:81
Alignment explanation
Indices: 16642--16800 Score: 203
Period size: 82 Copynumber: 2.0 Consensus size: 81
16632 ATGCACTTTT
* * * *
16642 TTTTTCCTTTT-TCCTTTGTCCTCAAAGAGCAGGGCACACCTTATTTCCTTCTTTTCCCTTAGTC
1 TTTTTCCTTTTCTCCTTTGTCCTCAAAAAGCAAGACACACCTTATTTCCTTATTTT-CCTTAGTC
* *
16706 CTTAAAGAGTAAGATGC
65 CTCAAAGAGCAAGATGC
* ** * *
16723 TTTTTCCTTTTCTCTTTTGTCCTCAAAAAGCAAGACACATTTTATTTCTTTATTTTCCTTTGTCC
1 TTTTTCCTTTTCTCCTTTGTCCTCAAAAAGCAAGACACACCTTATTTCCTTATTTTCCTTAGTCC
16788 TCAAAGAGCAAGA
66 TCAAAGAGCAAGA
16801 CTCCCCTTCC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 30 0.45
82 36 0.55
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (81 bp):
TTTTTCCTTTTCTCCTTTGTCCTCAAAAAGCAAGACACACCTTATTTCCTTATTTTCCTTAGTCC
TCAAAGAGCAAGATGC
Found at i:19821 original size:79 final size:79
Alignment explanation
Indices: 19661--20008 Score: 432
Period size: 79 Copynumber: 4.4 Consensus size: 79
19651 TCATCTCGAG
* *
19661 ATTTTTCACAATCGGGGATACTCCAACCCCATTTTTTTTGA-GGGATACTCCAACCACTG-TTTT
1 ATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCTC-GATTTT
19724 ATTTCCAAAACACCA
65 ATTTCCAAAACACCA
* * * * * * *
19739 ATTTTTCAAAATCGGGGATACTCCAATCCTATTATTTTTGAGGGGATATTTCAACCCCAATTTTA
1 ATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCTCGATTTTA
* *
19804 CTTCCAAAACACTA
66 TTTCCAAAACACCA
* * *
19818 ATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCTAACCTCGGTTTTA
1 ATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCTCGATTTTA
* *
19883 TTTTCAAAAAACCA
66 TTTCCAAAACACCA
** * **
19897 ATTTTTCACAATATGGGATACTCCAACCCCGTTATTTCAGAGGGGATACTCCAACCTCGATTTTA
1 ATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCTCGATTTTA
**
19962 TTTTTAAAACA-CA
66 TTTCCAAAACACCA
* *
19975 GATTTTTCACAATCGAGAATACTCCAACCCCATT
1 -ATTTTTCACAATCGGGGATACTCCAACCCCATT
20009 CCTCCGAGGG
Statistics
Matches: 230, Mismatches: 37, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
78 39 0.17
79 191 0.83
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (79 bp):
ATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCTCGATTTTA
TTTCCAAAACACCA
Found at i:27531 original size:21 final size:20
Alignment explanation
Indices: 27487--27582 Score: 115
Period size: 20 Copynumber: 4.8 Consensus size: 20
27477 ATTTGCTTGC
27487 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
**
27507 ATGTATCGATACATCTGGGTA
1 ATGTATCGATACAT-TGAATA
*
27528 ATGTATCGATACATTGAATC
1 ATGTATCGATACATTGAATA
* *
27548 ATGTATCGATACA--AAACTT
1 ATGTATCGATACATTGAA-TA
27567 ATGTATCGATACATTG
1 ATGTATCGATACATTG
27583 TATGGATACA
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
18 2 0.03
19 14 0.22
20 30 0.47
21 18 0.28
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:28449 original size:52 final size:52
Alignment explanation
Indices: 28317--28935 Score: 383
Period size: 52 Copynumber: 11.8 Consensus size: 52
28307 GGAAATATGT
* * * * * *
28317 CAATATGCTGATTTAAGGCCAGCGATATTGGGCTTAAAGATACA-AAGAATGT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATA-AGAAGAATGC
* * * *
28369 CAATGTGCTAATTCATGGCCAGTGACATTAGACTTGAAGATAAGAAGAATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAATGC
* * * * * *
28421 CAATTTGGTGATTCAAGGCCAGCTACATTGGGCTTAGGAATATTA-AAG-ATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--GAAGATAAGAAGAATGC
* * * * * * * * * *
28473 CAATATGTTGATTTAAGGCTAGCAATATTGGATTTAAAGAT--GATG-GTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAATGC
* * *
28522 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAGGTTGAAAAGGATGATAATGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGA---AGATAA-GA--AGAA---TGC
* * * * * * ** *
28583 CAATATACTAATTCAAGGCCAGCGATATTGGGCTTAAAGATGCGAAGAATGT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAATGC
* * * * *
28635 CAATGTGCTGATTCACGACCAGCGACGTTAGACTTGAAGATGAGAAGAATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAATGC
* ** ** * * * *
28687 CAATGTGCTAATTCAAGGCCAATGACATTGGGTTTAAAGATATGAAAAATGT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAATGC
** * * *
28739 CAATGTGCTGATTCTCGGCCAGCGACATTAGACTTGAAGATGAGATGAATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAATGC
* * * * *
28791 CAATATGCTGATTCAAGGCCAACGACATTAGG-CTTGAAGATGACAAAAAGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTGAAGATAAGAAGAA-TGC
* * * * *
28844 CAATGTGCTGATTTAAAGCCAGCAATACTGGACTTG-AGA-AAGAAGAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAA--TGC
* * * *
28896 CAATATGCTAATTCAAGGCCAACGACATTGGGCTTAGAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-GAAG
28936 GAGATGCCAC
Statistics
Matches: 421, Mismatches: 124, Indels: 42
0.72 0.21 0.07
Matches are distributed among these distances:
49 34 0.08
50 4 0.01
51 6 0.01
52 292 0.69
53 34 0.08
54 8 0.02
55 5 0.01
57 2 0.00
58 2 0.00
61 34 0.08
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26
Consensus pattern (52 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTGAAGATAAGAAGAATGC
Found at i:28781 original size:266 final size:268
Alignment explanation
Indices: 28212--28833 Score: 670
Period size: 266 Copynumber: 2.3 Consensus size: 268
28202 TTAATGTGTA
* * * * * *
28212 GATTCAAGGCCTGCAACACTGGACTTAAAGATGGTAAAGAGTGCCAATGTGCTGATTCAAGGCCA
1 GATTTAAGGCCAGCAACATTAGACTTAAAGATAG--ATGAGTGCCAATGTGCTGATTCAAGGCCA
** * * * * * * *
28277 GCGTTATTGGATTTG-GAGATGATAAGGGTGGGAAATATGTCAATATGCTGATTTAAGGCCAGCG
64 GCGACATTGGACTTGAGAGATGAAAAGGAT-GGAAATATGCCAATATACTAATTCAAGGCCAGCG
* * *
28341 ATATTGGGCTTAAAGATACAAAGAATGTCAATGTGCTAATTCATGGCCAGTGACATTAGACTTGA
128 ATATTGGGCTTAAAGATACAAAGAATGTCAATGTGCTAATTCACGACCAGCGACATTAGACTTGA
* * * * * * *
28406 AGATAAGAAGAATGCCAATTTGGTGATTCAAGGCCAGCTACATTGGGCTTAGGAATATTAAAGAT
193 AGATAAGAAGAATGCCAATGTGCTAATTCAAGGCCAGATACATTGGGCTTAAGAATATGAAAAAT
*
28471 GCCAATATGTT
258 GCCAATATGCT
* * * *
28482 GATTTAAGGCTAGCAATATTGGATTTAAAGAT-GATG-GTGCCAATGTGCTGATTCAAGGCCAGC
1 GATTTAAGGCCAGCAACATTAGACTTAAAGATAGATGAGTGCCAATGTGCTGATTCAAGGCCAGC
* *
28545 GACATTGGACTTGAG-GTTGAAAAGGAT-GATAATGGTGCCAATATACTAATTCAAGGCCAGCGA
66 GACATTGGACTTGAGAGATGAAAAGGATGGA-AAT-ATGCCAATATACTAATTCAAGGCCAGCGA
* * * *
28608 TATTGGGCTTAAAGATGCGAAGAATGTCAATGTGCTGATTCACGACCAGCGACGTTAGACTTGAA
129 TATTGGGCTTAAAGATACAAAGAATGTCAATGTGCTAATTCACGACCAGCGACATTAGACTTGAA
* *
28673 GATGAGAAGAATGCCAATGTGCTAATTCAAGGCCA-ATGACATTGGGTTTAA-AGATATGAAAAA
194 GATAAGAAGAATGCCAATGTGCTAATTCAAGGCCAGAT-ACATTGGGCTTAAGA-ATATGAAAAA
* *
28736 TGTCAATGTGCT
257 TGCCAATATGCT
* * * * *
28748 GATTCT-CGGCCAGCGACATTAGACTTGAAGATGAGATGAATGCCAATATGCTGATTCAAGGCCA
1 GATT-TAAGGCCAGCAACATTAGACTTAAAGAT-AGATGAGTGCCAATGTGCTGATTCAAGGCCA
*
28812 ACGACATTAGG-CTTGA-AGATGA
64 GCGACATT-GGACTTGAGAGATGA
28834 CAAAAAGTGC
Statistics
Matches: 293, Mismatches: 48, Indels: 23
0.80 0.13 0.06
Matches are distributed among these distances:
264 2 0.01
265 5 0.02
266 210 0.72
267 4 0.01
268 4 0.01
269 40 0.14
270 28 0.10
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (268 bp):
GATTTAAGGCCAGCAACATTAGACTTAAAGATAGATGAGTGCCAATGTGCTGATTCAAGGCCAGC
GACATTGGACTTGAGAGATGAAAAGGATGGAAATATGCCAATATACTAATTCAAGGCCAGCGATA
TTGGGCTTAAAGATACAAAGAATGTCAATGTGCTAATTCACGACCAGCGACATTAGACTTGAAGA
TAAGAAGAATGCCAATGTGCTAATTCAAGGCCAGATACATTGGGCTTAAGAATATGAAAAATGCC
AATATGCT
Found at i:28959 original size:31 final size:31
Alignment explanation
Indices: 28924--29023 Score: 130
Period size: 31 Copynumber: 3.2 Consensus size: 31
28914 CCAACGACAT
*
28924 TGGGCTTAGAAGGAGATGCCACCAACTTGTG
1 TGGGCTTAGAAGGAGTTGCCACCAACTTGTG
* * *
28955 TGGGCTTTGGAGGGGTTGCCACCAACTTGTG
1 TGGGCTTAGAAGGAGTTGCCACCAACTTGTG
* *
28986 TGGGTTTA-AAGAAGGTTGCCACCAACTTGTG
1 TGGGCTTAGAAGGA-GTTGCCACCAACTTGTG
29017 TGGGCTT
1 TGGGCTT
29024 TAGAGAAGGT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
30 2 0.03
31 56 0.97
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (31 bp):
TGGGCTTAGAAGGAGTTGCCACCAACTTGTG
Found at i:29277 original size:28 final size:28
Alignment explanation
Indices: 29219--29277 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
29209 CCATTGATTA
* * *
29219 TGGACTTCGAAAAGATGCCACTGATTTG
1 TGGACTTCGAAAAGATGCCACTAACTAG
* *
29247 TGGACTTCGAAGAGGTGCCACTAACTAG
1 TGGACTTCGAAAAGATGCCACTAACTAG
29275 TGG
1 TGG
29278 GCTTTGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (28 bp):
TGGACTTCGAAAAGATGCCACTAACTAG
Found at i:29466 original size:22 final size:22
Alignment explanation
Indices: 29438--29482 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
29428 TGCTTGGTTT
29438 GCAAAGCCTAGAGTCCTTACTA
1 GCAAAGCCTAGAGTCCTTACTA
29460 GCAAAGCCTAGAGTCCTTACTA
1 GCAAAGCCTAGAGTCCTTACTA
29482 G
1 G
29483 AGATTCCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (22 bp):
GCAAAGCCTAGAGTCCTTACTA
Found at i:30637 original size:9 final size:10
Alignment explanation
Indices: 30609--30636 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
30599 TTCTTTCCCC
30609 TTTTTTTTTG
1 TTTTTTTTTG
30619 TTTTTTTTTG
1 TTTTTTTTTG
30629 TTTTTTTT
1 TTTTTTTT
30637 GCACAGGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:31950 original size:23 final size:23
Alignment explanation
Indices: 31924--31969 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
31914 GGTATGCCAT
31924 CTTTCTCTTCTTCAACACTATGG
1 CTTTCTCTTCTTCAACACTATGG
31947 CTTTCTCTTCTTCAACACTATGG
1 CTTTCTCTTCTTCAACACTATGG
31970 TAATGAATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.30, G:0.09, T:0.43
Consensus pattern (23 bp):
CTTTCTCTTCTTCAACACTATGG
Found at i:44677 original size:20 final size:20
Alignment explanation
Indices: 44648--44743 Score: 88
Period size: 20 Copynumber: 4.8 Consensus size: 20
44638 TTTGTCTGCG
44648 TGTATCGATACATTGAATAA
1 TGTATCGATACATTGAATAA
* **
44668 TGTATTGATACATCTGGGTAA
1 TGTATCGATACAT-TGAATAA
* * *
44689 TGTATTGATATATTGAATCA
1 TGTATCGATACATTGAATAA
* *
44709 TGTATCGATACA--AAACTTA
1 TGTATCGATACATTGAA-TAA
44728 TGTATCGATACATTGA
1 TGTATCGATACATTGA
44744 TCGATACAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
18 2 0.03
19 14 0.23
20 26 0.43
21 18 0.30
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTGAATAA
Found at i:46859 original size:52 final size:51
Alignment explanation
Indices: 46789--46926 Score: 154
Period size: 52 Copynumber: 2.7 Consensus size: 51
46779 ATTTAACTGG
*
46789 ATATATCGATACATTGAAGAATATATTGATACATTTAGG-TCAAAAACCCAAA
1 ATATATCGATACAATGAAGAATATATTGATACATTT-GGATC-AAAACCCAAA
* * * * ** *
46841 ATATATCAACACAGTGAAGAATTTATCAATACATTTGGATCAAAACCCAGA
1 ATATATCGATACAATGAAGAATATATTGATACATTTGGATCAAAACCCAAA
* *
46892 ATGTATCGATGCAATGAA-AATATATTGATACATTT
1 ATATATCGATACAATGAAGAATATATTGATACATTT
46927 TCTTTCCATT
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
50 14 0.20
51 24 0.34
52 32 0.46
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (51 bp):
ATATATCGATACAATGAAGAATATATTGATACATTTGGATCAAAACCCAAA
Found at i:51217 original size:16 final size:16
Alignment explanation
Indices: 51196--51227 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51186 TACTTCAATT
51196 TAATAAATAAAATTTA
1 TAATAAATAAAATTTA
*
51212 TAATAATTAAAATTTA
1 TAATAAATAAAATTTA
51228 ATTAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAAATAAAATTTA
Found at i:51504 original size:3 final size:3
Alignment explanation
Indices: 51489--51521 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
51479 GATATTTAAT
*
51489 TAA TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51522 GATTTTACAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:52592 original size:20 final size:20
Alignment explanation
Indices: 52549--52604 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
52539 CATAAATGAA
52549 TGTATCGATACATACTTATAAT
1 TGTATCGATACAT--TTATAAT
*
52571 TGTATCGATACATTTATCAT
1 TGTATCGATACATTTATAAT
* *
52591 TGTGTCAATACATT
1 TGTATCGATACATT
52605 ATGGGTTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 18 0.58
22 13 0.42
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATTTATAAT
Found at i:57896 original size:33 final size:31
Alignment explanation
Indices: 57859--57929 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 31
57849 ATTATATTTA
*
57859 AAATATTATATATTTACATAAATTTTAATATAT
1 AAATATTATATA-TTACATAAAATTTAATA-AT
*
57892 AAATAATATATATTACATAAAATTTAATAAT
1 AAATATTATATATTACATAAAATTTAATAAT
*
57923 ATATATT
1 AAATATT
57930 TTTTATAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 7 0.21
32 16 0.47
33 11 0.32
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
AAATATTATATATTACATAAAATTTAATAAT
Found at i:57918 original size:32 final size:34
Alignment explanation
Indices: 57859--57925 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
57849 ATTATATTTA
* *
57859 AAATATTATATATTTACATAAATTTTAAT-ATAT
1 AAATAATATATATTTACATAAAATTTAATAATAT
57892 AAATAATATATA-TTACATAAAATTTAATAATAT
1 AAATAATATATATTTACATAAAATTTAATAATAT
57925 A
1 A
57926 TATTTTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (34 bp):
AAATAATATATATTTACATAAAATTTAATAATAT
Found at i:58172 original size:2 final size:2
Alignment explanation
Indices: 58167--58197 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
58157 TACACACACG
58167 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58198 TTCAATGTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:58375 original size:4 final size:4
Alignment explanation
Indices: 58358--58391 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
58348 AATTAATGAG
58358 ATTT -TTT A-TT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
58392 GATCAATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.21
4 22 0.79
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:59264 original size:23 final size:21
Alignment explanation
Indices: 59217--59268 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
59207 TTATTCTTTT
59217 AAAT-TAAATAACATGTTCAC
1 AAATATAAATAACATGTTCAC
* *
59237 AAATACTAAATGAATATGTTCAT
1 AAATA-TAAAT-AACATGTTCAC
*
59260 GAATATAAA
1 AAATATAAA
59269 ATCAAAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
22 9 0.35
23 13 0.50
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.31
Consensus pattern (21 bp):
AAATATAAATAACATGTTCAC
Found at i:62443 original size:19 final size:20
Alignment explanation
Indices: 62399--62450 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
62389 ATTCAACGAT
62399 TTGTATCGATACATAAAGTA
1 TTGTATCGATACATAAAGTA
*
62419 TTGTATCGATACATAAA-TG
1 TTGTATCGATACATAAAGTA
62438 TTGTATCGATACA
1 TTGTATCGATACA
62451 ATGTATAGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATAAAGTA
Found at i:62462 original size:32 final size:32
Alignment explanation
Indices: 62420--62484 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
62410 CATAAAGTAT
*
62420 TGTATCGATACATAAATGTTGTATCGATACAA
1 TGTATAGATACATAAATGTTGTATCGATACAA
* *
62452 TGTATAGATACATAAGTTTTGTATCGATACAA
1 TGTATAGATACATAAATGTTGTATCGATACAA
62484 T
1 T
62485 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (32 bp):
TGTATAGATACATAAATGTTGTATCGATACAA
Found at i:62480 original size:19 final size:19
Alignment explanation
Indices: 62398--62482 Score: 83
Period size: 19 Copynumber: 4.7 Consensus size: 19
62388 AATTCAACGA
62398 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACAT-AAGT
* *
62418 ATTGTATCGATACATAAAT
1 TTTGTATCGATACATAAGT
*
62437 GTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
*
62452 --TGTATAGATACATAAGT
1 TTTGTATCGATACATAAGT
62469 TTTGTATCGATACA
1 TTTGTATCGATACA
62483 ATTTAAGCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
13 10 0.19
15 2 0.04
17 2 0.04
19 26 0.48
20 14 0.26
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:62543 original size:13 final size:13
Alignment explanation
Indices: 62525--62549 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62515 ATTACTCAAA
62525 TGTATCGATACAT
1 TGTATCGATACAT
62538 TGTATCGATACA
1 TGTATCGATACA
62550 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:76428 original size:11 final size:11
Alignment explanation
Indices: 76411--76499 Score: 90
Period size: 12 Copynumber: 7.6 Consensus size: 11
76401 CTCCACAAAT
*
76411 AAAAAAAAGAAG
1 AAAAAAAA-AAC
76423 AAAAAAAAAAC
1 AAAAAAAAAAC
76434 AAAAAAACAAA-
1 AAAAAAA-AAAC
*
76445 AAACAAAAAACC
1 AAA-AAAAAAAC
76457 AAAAAAAAAAC
1 AAAAAAAAAAC
76468 AAAAAAAAAAAC
1 -AAAAAAAAAAC
*
76480 AAAAACAACAAC
1 AAAAA-AAAAAC
76492 AACAAAAA
1 AA-AAAAA
76500 GGGTCCGGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
11 26 0.39
12 38 0.57
13 3 0.04
ACGTcount: A:0.85, C:0.12, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:76437 original size:6 final size:6
Alignment explanation
Indices: 76423--76493 Score: 65
Period size: 6 Copynumber: 11.3 Consensus size: 6
76413 AAAAAAGAAG
*
76423 AAAAA- AAAAAC AAAAAAAC AAAAAAC AAAAAACC AAAAA- AAAAAC AAAAAA
1 AAAAAC AAAAAC --AAAAAC -AAAAAC -AAAAA-C AAAAAC AAAAAC AAAAAC
*
76474 AAAAAC AAAAAC AACAAC AA
1 AAAAAC AAAAAC AAAAAC AA
76494 CAAAAAGGGT
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
5 10 0.17
6 23 0.40
7 18 0.31
8 7 0.12
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:76437 original size:8 final size:8
Alignment explanation
Indices: 76426--76490 Score: 82
Period size: 8 Copynumber: 8.2 Consensus size: 8
76416 AAAGAAGAAA
76426 AAAAAAAC
1 AAAAAAAC
76434 AAAAAAAC
1 AAAAAAAC
76442 -AAAAAAC
1 AAAAAAAC
*
76449 AAAAAACC
1 AAAAAAAC
76457 AAAAAAA-
1 AAAAAAAC
76464 AAACAAAA-
1 AAA-AAAAC
76472 AAAAAAAC
1 AAAAAAAC
76480 AAAAACAAC
1 AAAAA-AAC
76489 AA
1 AA
76491 CAACAAAAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
7 14 0.27
8 32 0.63
9 5 0.10
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:76461 original size:31 final size:31
Alignment explanation
Indices: 76423--76484 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 31
76413 AAAAAAGAAG
76423 AAAAAAAAAACAAAAAAACAAAAAACAAAAAACC
1 AAAAAAAAAAC--AAAAA-AAAAAACAAAAAACC
76457 AAAAAAAAAACAAAAAAAAAAACAAAAA
1 AAAAAAAAAACAAAAAAAAAAACAAAAA
76485 CAACAACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 12 0.43
32 5 0.18
34 11 0.39
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (31 bp):
AAAAAAAAAACAAAAAAAAAAACAAAAAACC
Found at i:76499 original size:1 final size:1
Alignment explanation
Indices: 76411--76484 Score: 67
Period size: 1 Copynumber: 74.0 Consensus size: 1
76401 CTCCACAAAT
* * * * * ** *
76411 AAAAAAAAGAAGAAAAAAAAAACAAAAAAACAAAAAACAAAAAACCAAAAAAAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
76476 AAACAAAAA
1 AAAAAAAAA
76485 CAACAACAAC
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:77978 original size:29 final size:29
Alignment explanation
Indices: 77936--78140 Score: 236
Period size: 29 Copynumber: 7.1 Consensus size: 29
77926 TTCCTCACCC
* *
77936 TTCAAAAGCCCACAAGTCAGTGGTATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
77965 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-CCTT
* *
77995 TTCCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
*
78024 TTCCAAAGCCCACAAGTCAGTGGCACCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCACC-TT
* ** *
78054 TTCCAAAGCCCACAAGTCAGTGATATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
*
78083 TTC-AAAGCCCACAAATCAGTGGCAACC--
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTT
* * * *
78110 TTAAAAAACCCACAAGCCAGTGGTACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
78139 TT
1 TT
78141 TTGGAAGCCC
Statistics
Matches: 153, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
27 5 0.03
28 33 0.22
29 62 0.41
30 53 0.35
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (29 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCTT
Found at i:78003 original size:30 final size:29
Alignment explanation
Indices: 77940--78111 Score: 238
Period size: 29 Copynumber: 5.9 Consensus size: 29
77930 TCACCCTTCA
* * *
77940 AAAGCCCACAAGTCAGTGGTATCTTTTCA
1 AAAGCCCACAAGTCAGTGGCACCTTTTCC
77969 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCC
*
77999 AAAGCCCACAAGTCAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTCC
78028 AAAGCCCACAAGTCAGTGGCACCTTTTTCC
1 AAAGCCCACAAGTCAGTGGCACC-TTTTCC
** *
78058 AAAGCCCACAAGTCAGTGATATCTTTT-C
1 AAAGCCCACAAGTCAGTGGCACCTTTTCC
*
78086 AAAGCCCACAAATCAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGC-ACCTT
78112 AAAAAACCCA
Statistics
Matches: 128, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
28 18 0.14
29 57 0.45
30 53 0.41
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCACCTTTTCC
Found at i:78010 original size:59 final size:58
Alignment explanation
Indices: 77940--78111 Score: 281
Period size: 59 Copynumber: 2.9 Consensus size: 58
77930 TCACCCTTCA
77940 AAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGTATCTTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* *
77999 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCTTTTTCC
1 AAAGCCCACAAGTCAGTGGTATCTTTT-CAAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * *
78058 AAAGCCCACAAGTCAGTGATATCTTTTCAAAGCCCACAAATCAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGTATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTT
78112 AAAAAACCCA
Statistics
Matches: 105, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
58 24 0.23
59 80 0.76
60 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23
Consensus pattern (58 bp):
AAAGCCCACAAGTCAGTGGTATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
Found at i:78223 original size:34 final size:34
Alignment explanation
Indices: 78145--78302 Score: 167
Period size: 34 Copynumber: 4.6 Consensus size: 34
78135 CCTTTTTTGG
* * *
78145 AAGCCCACAA-TTTCGTGGCAC-CGTTTTTCTTTTT
1 AAGCCCACAACTCT-GTGGCACTC-TTTTTCCTTCT
*
78179 GAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
*
78214 AAGCCCACAACTCTATGGCACTCTTTTTCCTTCT
1 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
** *
78248 AAGCCCACAACTCCATTGCACTCTTTTTCCTTCT
1 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
* * * *
78282 AAGTCCATAAGTCCGTGGCAC
1 AAGCCCACAACTCTGTGGCAC
78303 CCTTATCTTT
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
34 80 0.73
35 27 0.25
36 3 0.03
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.35
Consensus pattern (34 bp):
AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
Found at i:78372 original size:49 final size:49
Alignment explanation
Indices: 78297--78558 Score: 380
Period size: 49 Copynumber: 5.3 Consensus size: 49
78287 CATAAGTCCG
* * *
78297 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
** *
78346 TAACACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * * *
78395 TGGCACCTTCATCTTTATGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * *
78444 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
78493 TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* *
78542 TGGTACCTTCATCTTTA
1 TGGCACCCTCATCTTTA
78559 TTTCCAATAG
Statistics
Matches: 188, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 188 1.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.32
Consensus pattern (49 bp):
TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
Found at i:78565 original size:147 final size:147
Alignment explanation
Indices: 78297--78701 Score: 506
Period size: 147 Copynumber: 2.7 Consensus size: 147
78287 CATAAGTCCG
78297 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTAACACCCTCATCTTT
1 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTAACACCCTCATCTTT
* * *
78362 AAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCACCTTCATCTTTATGTCCAATATAGCTG
66 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTATGTCCAATAGACCTG
78427 GCCTTGAATCAGCATAT
131 GCCTTGAATCAGCATAT
** *
78444 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTATCTTT
1 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTAACACCCTCATCTTT
* * *
78509 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTCATCTTTATTTCCAATAGCCCTG
66 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTATGTCCAATAGACCTG
*
78574 TCCTTGAATCAGCATAT
131 GCCTTGAATCAGCATAT
* * * * * * * * *
78591 GGGTA-CCTTTTCTGTCTTGAGTCCAATGCCGCTGACCGTGAATCAGCACATTAACATCTTTTTT
1 TGGCACCCTTATC--T-TTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTAACA-C-----C
* * * **
78655 CTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCGTATTGGCA
57 CTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
78702 TCTTTAACAT
Statistics
Matches: 221, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
146 6 0.03
147 140 0.63
148 1 0.00
149 33 0.15
150 1 0.00
155 40 0.18
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (147 bp):
TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTAACACCCTCATCTTT
AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTATGTCCAATAGACCTG
GCCTTGAATCAGCATAT
Found at i:78596 original size:49 final size:48
Alignment explanation
Indices: 78297--78642 Score: 315
Period size: 49 Copynumber: 7.0 Consensus size: 48
78287 CATAAGTCCG
*
78297 TGGCACCCTTATCTTTAAGACCAAT-GTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-CCTTATCTTTAAGTCCAATAG-CGCTGGCCTTGAATCAGCACAT
** * * *
78346 TAACACCCTCATCTTTAAGTCCAAT-GTAGCTGGCCTTGAATCAGTACAT
1 TGGCA-CCTTATCTTTAAGTCCAATAG-CGCTGGCCTTGAATCAGCACAT
* ** *
78395 TGGCACCTTCATCTTTATGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTT-ATCTTTAAGTCCAATAGCGCTGGCCTTGAATCAGCACAT
*
78444 TGGCACCCTTATCTTTAAGACCAAT-GTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-CCTTATCTTTAAGTCCAATAG-CGCTGGCCTTGAATCAGCACAT
*
78493 TGGCACCCTTATCTTTAAGTCCAAT-GTAGCTGGCCTTGAATCAGCACAT
1 TGGCA-CCTTATCTTTAAGTCCAATAG-CGCTGGCCTTGAATCAGCACAT
* ** * * *
78542 TGGTACCTTCATCTTTATTTCCAATAGCCCTGTCCTTGAATCAGCATAT
1 TGGCACCTT-ATCTTTAAGTCCAATAGCGCTGGCCTTGAATCAGCACAT
* * * * * *
78591 GGGTACCTTTTCTGTCTTGAGTCCAAT-GCCGCTGACCGTGAATCAGCACAT
1 TGGCACCTTATC--T-TTAAGTCCAATAG-CGCTGGCCTTGAATCAGCACAT
78642 T
1 T
78643 AACATCTTTT
Statistics
Matches: 250, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
48 9 0.04
49 208 0.83
50 7 0.03
51 26 0.10
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (48 bp):
TGGCACCTTATCTTTAAGTCCAATAGCGCTGGCCTTGAATCAGCACAT
Found at i:78689 original size:55 final size:52
Alignment explanation
Indices: 78629--78868 Score: 168
Period size: 52 Copynumber: 4.6 Consensus size: 52
78619 CCGCTGACCG
* *
78629 TGAATCAGCACATTAACATCTTTTTTCTCATCTTTAAGTCCAATATCGTTGGCCT
1 TGAATCAGCACATTGACATC---TTTCTCATCTTTAAGCCCAATATCGTTGGCCT
** * ** ** *
78684 TGAATCAGCGTATTGGCATCTTTAACATCCCTAAGCCCAATGTCGTTGGCCT
1 TGAATCAGCACATTGACATCTTTCTCATCTTTAAGCCCAATATCGTTGGCCT
** * * * * * * *
78736 TGTCTCAGCACATTGACATCCTTCTC--C---AAGTCTAATACCGCTGACCA
1 TGAATCAGCACATTGACATCTTTCTCATCTTTAAGCCCAATATCGTTGGCCT
* *
78783 TGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGTCG
1 TGAATCAGCACATTGACAT-C--TTTCTCATCTTTAAGCCCAATATCGTTGGCCT
* **
78838 TGAATCAGCATATTGGTATCTTTCTCA-CTTT
1 TGAATCAGCACATTGACATCTTTCTCATCTTT
78869 TCTCATCCTC
Statistics
Matches: 139, Mismatches: 38, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
47 30 0.22
48 1 0.01
50 6 0.04
51 4 0.03
52 52 0.37
54 1 0.01
55 45 0.32
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.35
Consensus pattern (52 bp):
TGAATCAGCACATTGACATCTTTCTCATCTTTAAGCCCAATATCGTTGGCCT
Found at i:79512 original size:13 final size:13
Alignment explanation
Indices: 79494--79563 Score: 86
Period size: 13 Copynumber: 4.9 Consensus size: 13
79484 CATAAAGTAT
79494 TGTATCGATACAA
1 TGTATCGATACAA
79507 TGTATCGATACAA
1 TGTATCGATACAA
79520 TGTATCGATACATAA
1 TGTATCGATAC--AA
79535 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
79552 TGTATCGATACA
1 TGTATCGATACA
79564 TAAGTTTTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
13 36 0.71
15 2 0.04
17 2 0.04
19 11 0.22
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:79544 original size:19 final size:18
Alignment explanation
Indices: 79472--79582 Score: 72
Period size: 13 Copynumber: 6.8 Consensus size: 18
79462 AATTCAACGA
79472 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
79491 TATTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
79507 --TGTATCGATAC--AA-
1 TTTGTATCGATACATAAG
79520 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
79536 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
79552 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
*
79568 TTTTGTATTGATACA
1 -TTTGTATCGATACA
79583 ATTTAAGATA
Statistics
Matches: 78, Mismatches: 1, Indels: 26
0.74 0.01 0.25
Matches are distributed among these distances:
13 35 0.45
15 4 0.05
17 4 0.05
19 23 0.29
20 12 0.15
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:79548 original size:32 final size:32
Alignment explanation
Indices: 79507--79584 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
79497 ATCGATACAA
79507 TGTATCGATACAATGTATCGATACATAAGTGT
1 TGTATCGATACAATGTATCGATACATAAGTGT
*
79539 TGTATCGATACAATGTATCGATACATAAGTTT
1 TGTATCGATACAATGTATCGATACATAAGTGT
*
79571 TGTATTGATACAAT
1 TGTATCGATACAAT
79585 TTAAGATACT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAATGTATCGATACATAAGTGT
Found at i:79552 original size:45 final size:46
Alignment explanation
Indices: 79474--79563 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 46
79464 TTCAACGATT
79474 TGTATCGATACATAAAGTATTGTATCGATACAATGTATCGATACAA
1 TGTATCGATACATAAAGTATTGTATCGATACAATGTATCGATACAA
*
79520 TGTATCGATACAT-AAGTGTTGTATCGATACAATGTATCGATACA
1 TGTATCGATACATAAAGTATTGTATCGATACAATGTATCGATACA
79564 TAAGTTTTGT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 30 0.70
46 13 0.30
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (46 bp):
TGTATCGATACATAAAGTATTGTATCGATACAATGTATCGATACAA
Found at i:79643 original size:13 final size:13
Alignment explanation
Indices: 79625--79649 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79615 ATTACTCAAA
79625 TGTATCGATACAT
1 TGTATCGATACAT
79638 TGTATCGATACA
1 TGTATCGATACA
79650 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:83167 original size:13 final size:13
Alignment explanation
Indices: 83149--83174 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83139 CAATTTTTTG
83149 TGTATCGATACAT
1 TGTATCGATACAT
83162 TGTATCGATACAT
1 TGTATCGATACAT
83175 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:83258 original size:20 final size:20
Alignment explanation
Indices: 83213--83288 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
83203 CTGCCAAGAA
***
83213 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
83234 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
83254 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
*
83274 GTGTATCGATACATT
1 ATGTATCGATACATT
83289 TAAGGGTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.04
20 30 0.65
21 14 0.30
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:86708 original size:1 final size:1
Alignment explanation
Indices: 85672--86695 Score: 1949
Period size: 1 Copynumber: 1024.0 Consensus size: 1
85662 AGAGAAATTT
* *
85672 GGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
85737 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
85802 GGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
**
85867 GGGGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
85932 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
85997 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
86062 GGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86127 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86192 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86257 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
86322 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86387 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86452 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86517 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86582 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
86647 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
86696 AGGAAGGGGG
Statistics
Matches: 1003, Mismatches: 20, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
1 1003 1.00
ACGTcount: A:0.01, C:0.00, G:0.99, T:0.00
Consensus pattern (1 bp):
G
Done.