Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold167
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4199719
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.33
Warning! 197959 characters in sequence are not A, C, G, or T
File 6 of 22
Found at i:798233 original size:3 final size:3
Alignment explanation
Indices: 798225--798259 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
798215 ATTTGCTGCA
798225 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
798260 ACTCCATGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:800336 original size:31 final size:29
Alignment explanation
Indices: 800286--800346 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 29
800276 ATTATAAAAA
800286 TATATATATATTAATATAAAAATAATATTTT
1 TATATATATATTAATAT-AAAATAA-ATTTT
*
800317 TATATAT-TTTTAATAATAAAATAAATTTT
1 TATATATATATTAAT-ATAAAATAAATTTT
800346 T
1 T
800347 TAAATTTAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.21
30 13 0.46
31 9 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (29 bp):
TATATATATATTAATATAAAATAAATTTT
Found at i:800353 original size:28 final size:30
Alignment explanation
Indices: 800296--800353 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
800286 TATATATATA
*
800296 TTAATATAAAAATAATATTTTTATATATTT
1 TTAATATAAAAATAATATTTTTATAAATTT
800326 TTAATA-ATAAAATAA-ATTTTT-TAAATTT
1 TTAATATA-AAAATAATATTTTTATAAATTT
800354 AACGAATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 6 0.23
29 7 0.27
30 13 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
TTAATATAAAAATAATATTTTTATAAATTT
Found at i:800951 original size:2 final size:2
Alignment explanation
Indices: 800944--800979 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
800934 TTCTGGTCAT
800944 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
800980 AAATACACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:801238 original size:13 final size:15
Alignment explanation
Indices: 801220--801269 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 15
801210 ATGCTGTAAA
801220 AAATTAATAA-GT-T
1 AAATTAATAATGTAT
*
801233 AAATTAA-AATGTCT
1 AAATTAATAATGTAT
801247 AAA--AATAATGTAT
1 AAATTAATAATGTAT
801260 AAATTAATAA
1 AAATTAATAA
801270 AAACTTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 4 0.13
13 18 0.58
14 4 0.13
15 5 0.16
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (15 bp):
AAATTAATAATGTAT
Found at i:802220 original size:16 final size:16
Alignment explanation
Indices: 802177--802223 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
802167 TATGTTTAAT
802177 ATATAAA-ATTTTATA
1 ATATAAATATTTTATA
* *
802192 A-ATAAGGTTTTTTATA
1 ATATAA-ATATTTTATA
802208 ATATAAATATTTTATA
1 ATATAAATATTTTATA
802224 TTAAATTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 4 0.16
15 1 0.04
16 16 0.64
17 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (16 bp):
ATATAAATATTTTATA
Found at i:804033 original size:16 final size:15
Alignment explanation
Indices: 804008--804063 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
803998 TGAAAATTAT
804008 ATTTAAATTATTTTAA
1 ATTT-AATTATTTTAA
*
804024 ATTTAGATTATTTTGAG
1 ATTTA-ATTATTTT-AA
* *
804041 TTTTAATTGTTTTAA
1 ATTTAATTATTTTAA
804056 ATTTAATT
1 ATTTAATT
804064 TATTAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 9 0.27
16 19 0.58
17 5 0.15
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (15 bp):
ATTTAATTATTTTAA
Found at i:804085 original size:22 final size:23
Alignment explanation
Indices: 804043--804085 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
804033 ATTTTGAGTT
* *
804043 TTAATTGTTTTAAATTTAATTTA
1 TTAATTGTTTAAAATTAAATTTA
804066 TTAATT-TTTAAAATTAAATT
1 TTAATTGTTTAAAATTAAATT
804086 AAATTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TTAATTGTTTAAAATTAAATTTA
Found at i:804388 original size:24 final size:25
Alignment explanation
Indices: 804351--804424 Score: 93
Period size: 24 Copynumber: 3.0 Consensus size: 25
804341 TCATTTCTAA
804351 AATATTAT-ATAATTATATATTT-T
1 AATATTATAATAATTATATATTTAT
*
804374 AATATTTTAATAATT-TATATTATAT
1 AATATTATAATAATTATATATT-TAT
804399 AAT-TTATAATAATTTATATATTTAT
1 AATATTATAATAA-TTATATATTTAT
804424 A
1 A
804425 TTACATTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
23 13 0.30
24 15 0.34
25 10 0.23
26 6 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
AATATTATAATAATTATATATTTAT
Found at i:804422 original size:32 final size:29
Alignment explanation
Indices: 804351--804427 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 29
804341 TCATTTCTAA
*
804351 AATATTATATAATTATATATTTTAATATTTT
1 AATATT-TAT-ATTATATATTTTAATAATTT
804382 AATAATTTATATTATATAATTTATAATAATTT
1 AAT-ATTTATATTATAT-ATTT-TAATAATTT
804414 ATATATTTATATTA
1 A-ATATTTATATTA
804428 CATTCATATT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
30 7 0.17
31 10 0.24
32 22 0.54
33 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
AATATTTATATTATATATTTTAATAATTT
Found at i:804818 original size:2 final size:2
Alignment explanation
Indices: 804811--804850 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
804801 AAACCAAAGA
804811 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
804851 GTGGTGAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:806850 original size:2 final size:2
Alignment explanation
Indices: 806783--806831 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
806773 TTAAGTGGAT
*
806783 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
806825 TA TA TA T
1 TA TA TA T
806832 GAAGGAAGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:807244 original size:16 final size:16
Alignment explanation
Indices: 807219--807249 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
807209 CCATTAAGTT
807219 AAATACATATTTTTTA
1 AAATACATATTTTTTA
*
807235 AAATATATATTTTTT
1 AAATACATATTTTTT
807250 CTCCGCAACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
AAATACATATTTTTTA
Found at i:807780 original size:19 final size:19
Alignment explanation
Indices: 807726--807781 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
807716 TTCACATCCA
* *
807726 ATAAATATTTAAATATAATT
1 ATAAATA-TAAAATTTAATT
**
807746 ATAAATATAATTTTTAATT
1 ATAAATATAAAATTTAATT
807765 ATATAA-ATAAAATTTAA
1 ATA-AATATAAAATTTAA
807782 AAAATTAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 20 0.69
20 9 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAAATATAAAATTTAATT
Found at i:808301 original size:2 final size:2
Alignment explanation
Indices: 808294--808347 Score: 65
Period size: 2 Copynumber: 27.0 Consensus size: 2
808284 AGGCAAGAAC
* *
808294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T CT CAT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT
*
808336 AT AT AT GT AT AT
1 AT AT AT AT AT AT
808348 GATACATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
1 1 0.02
2 43 0.96
3 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:808840 original size:2 final size:2
Alignment explanation
Indices: 808833--808870 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
808823 TACGAAATAC
808833 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
808871 GAAAGCCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:809032 original size:14 final size:14
Alignment explanation
Indices: 809013--809039 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
809003 ATTATCGTTC
809013 AAAATAATATATAA
1 AAAATAATATATAA
809027 AAAATAATATATA
1 AAAATAATATATA
809040 TATTTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAATAATATATAA
Found at i:809659 original size:25 final size:23
Alignment explanation
Indices: 809604--809659 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
809594 AATAGAAATT
*
809604 AATTTTAAAAAATAAAAAAGTAA
1 AATTTTAAAAAATAAAAAAATAA
*
809627 AATCTTTTAAAAATTAAAAAAAATCAA
1 AA--TTTTAAAAAAT-AAAAAAAT-AA
809654 AATTTT
1 AATTTT
809660 GTATTAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 2 0.07
25 14 0.52
26 7 0.26
27 4 0.15
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (23 bp):
AATTTTAAAAAATAAAAAAATAA
Found at i:810334 original size:2 final size:2
Alignment explanation
Indices: 810327--810366 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
810317 TTTAAACGAT
*
810327 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
810367 GAGTGTTGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:810538 original size:4 final size:4
Alignment explanation
Indices: 810529--810576 Score: 96
Period size: 4 Copynumber: 12.0 Consensus size: 4
810519 TTAAGACCCT
810529 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
810577 TATATATATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:811332 original size:31 final size:30
Alignment explanation
Indices: 811291--811349 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
811281 TAAACCATTG
*
811291 AAAATTAAAATTGAAT-GCCAAAATTCAATTA
1 AAAATCAAAATTGAATAG-C-AAATTCAATTA
*
811322 AAAATCAAAATTTAATAGCAAATTCAAT
1 AAAATCAAAATTGAATAGCAAATTCAAT
811350 CAAACAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.36
31 15 0.60
32 1 0.04
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.29
Consensus pattern (30 bp):
AAAATCAAAATTGAATAGCAAATTCAATTA
Found at i:815001 original size:21 final size:18
Alignment explanation
Indices: 814977--815026 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 18
814967 TATTTTTATT
814977 TAAATTTAATTATAAAATATA
1 TAAATTTAA-TATAAAA-A-A
814998 TAAATGTTAATATAAAAAA
1 TAAAT-TTAATATAAAAAA
815017 TAATATTTAA
1 TAA-ATTTAA
815027 ATATTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 8 0.30
20 3 0.11
21 12 0.44
22 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
TAAATTTAATATAAAAAA
Found at i:816385 original size:2 final size:2
Alignment explanation
Indices: 816363--816405 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
816353 TTTGTGATTT
*
816363 TA TA CA TA TA -A TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
816403 TA T
1 TA T
816406 CTAAGTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:821751 original size:20 final size:20
Alignment explanation
Indices: 821726--821766 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
821716 TTTTGTTTAT
821726 ATATCTATACATACTATTAA
1 ATATCTATACATACTATTAA
821746 ATATCTATACATACTATTAA
1 ATATCTATACATACTATTAA
821766 A
1 A
821767 ATGATGATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (20 bp):
ATATCTATACATACTATTAA
Found at i:821914 original size:11 final size:11
Alignment explanation
Indices: 821881--821970 Score: 50
Period size: 11 Copynumber: 8.4 Consensus size: 11
821871 ATATTATAAA
821881 TTTATATATATT
1 TTTATAT-TATT
* * *
821893 TATAAACTATT
1 TTTATATTATT
821904 TTTATATTA--
1 TTTATATTATT
821913 -TTATATTCA-T
1 TTTATATT-ATT
*
821923 ATTATATT-TAT
1 TTTATATTAT-T
821934 TTT-TATTATAT
1 TTTATATTAT-T
821945 TTTA-ATTAATT
1 TTTATATT-ATT
821956 TTTATATTATT
1 TTTATATTATT
821967 TTTA
1 TTTA
821971 ATGTACGATG
Statistics
Matches: 62, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
8 7 0.11
9 1 0.02
10 4 0.06
11 41 0.66
12 9 0.15
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTATATTATT
Found at i:822057 original size:13 final size:14
Alignment explanation
Indices: 822039--822067 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
822029 AATTTAAGTG
822039 TTTATAT-TTTTTA
1 TTTATATATTTTTA
822052 TTTATATATTTTTA
1 TTTATATATTTTTA
822066 TT
1 TT
822068 ATTTAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATATATTTTTA
Found at i:822898 original size:18 final size:19
Alignment explanation
Indices: 822875--822911 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
822865 AATTTTTTTA
*
822875 TATATATT-TTGTCATATT
1 TATATATTCATGTCATATT
822893 TATATATTCATGTCATATT
1 TATATATTCATGTCATATT
822912 ATTTTTGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.57
Consensus pattern (19 bp):
TATATATTCATGTCATATT
Found at i:823042 original size:17 final size:18
Alignment explanation
Indices: 823016--823057 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
823006 TTAACTTCAA
*
823016 ATTT-AATTATATAAAAT
1 ATTTAAATTATAAAAAAT
823033 -TTTAAATTATAAAAAAT
1 ATTTAAATTATAAAAAAT
823050 ATTTAAAT
1 ATTTAAAT
823058 AAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 12 0.55
18 7 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTTAAATTATAAAAAAT
Found at i:823131 original size:26 final size:27
Alignment explanation
Indices: 823079--823133 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
823069 ATTTAAAGTT
**
823079 ATTTAACTTAAATGTATATAATTATTA
1 ATTTAACTTAAATGTATATAAACATTA
* *
823106 ATTTAA-TTAAATTTTTATAAACATTA
1 ATTTAACTTAAATGTATATAAACATTA
823132 AT
1 AT
823134 AATCTCTCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (27 bp):
ATTTAACTTAAATGTATATAAACATTA
Found at i:823169 original size:2 final size:2
Alignment explanation
Indices: 823164--823192 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
823154 CTTTAGTGTG
823164 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
823193 GTAATTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:823460 original size:26 final size:25
Alignment explanation
Indices: 823428--823487 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 25
823418 TTAACTTATA
* *
823428 TTTAATTGAGTTTAAATAAAATTTT
1 TTTAATTAAATTTAAATAAAATTTT
*
823453 TATTAATTTAAATTTTAATAAAATTTT
1 T-TTAA-TTAAATTTAAATAAAATTTT
823480 TTTAATTA
1 TTTAATTA
823488 TAACTTGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.13
26 8 0.27
27 18 0.60
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (25 bp):
TTTAATTAAATTTAAATAAAATTTT
Found at i:827743 original size:12 final size:11
Alignment explanation
Indices: 827714--827756 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
827704 ATGACGATTA
*
827714 TAAAATATAAA
1 TAAAATATAAT
*
827725 TATAATAATAAT
1 TAAAAT-ATAAT
827737 TAAAATATAAT
1 TAAAATATAAT
827748 ATAAAATAT
1 -TAAAATAT
827757 TATACGACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAAATATAAT
Found at i:827806 original size:13 final size:13
Alignment explanation
Indices: 827784--827829 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
827774 TATAATAATA
827784 AAATATAAATTTAT
1 AAATA-AAATTTAT
827798 AAATAAAATTTAT
1 AAATAAAATTTAT
*
827811 ATAATAAAAATTAT
1 A-AATAAAATTTAT
*
827825 TAATA
1 AAATA
827830 TATTACAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 13 0.45
14 16 0.55
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AAATAAAATTTAT
Found at i:827830 original size:18 final size:20
Alignment explanation
Indices: 827809--827852 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
827799 AATAAAATTT
827809 ATATAATA-AAAATTAT-TA
1 ATATAATACAAAATTATATA
* *
827827 ATATATTACAAATTTATATA
1 ATATAATACAAAATTATATA
827847 ATATAA
1 ATATAA
827853 ATTACTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 7 0.33
19 7 0.33
20 7 0.33
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATAATACAAAATTATATA
Found at i:827854 original size:15 final size:15
Alignment explanation
Indices: 827785--827855 Score: 74
Period size: 15 Copynumber: 4.7 Consensus size: 15
827775 ATAATAATAA
827785 AATATAAATTTATA-
1 AATATAAATTTATAT
827799 AATA-AAATTTATAT
1 AATATAAATTTATAT
*
827813 AATAAAAATTATTAATAT
1 AATATAAA-T-TT-ATAT
* *
827831 ATTACAAATTTATAT
1 AATATAAATTTATAT
827846 AATATAAATT
1 AATATAAATT
827856 ACTTTTAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
13 9 0.19
14 8 0.17
15 15 0.31
16 3 0.06
17 3 0.06
18 10 0.21
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATAAATTTATAT
Found at i:827884 original size:22 final size:21
Alignment explanation
Indices: 827826--827884 Score: 50
Period size: 22 Copynumber: 2.8 Consensus size: 21
827816 AAAAATTATT
*
827826 AATATATTACAAATTT-ATATA
1 AATAAATTA-AAATTTAATATA
**
827847 ATATAAATT-ACTTTTAAATATA
1 A-ATAAATTAAAATTT-AATATA
827869 AATAAATTAAAATTTA
1 AATAAATTAAAATTTA
827885 TAAATATACA
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
20 4 0.14
21 9 0.31
22 16 0.55
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
AATAAATTAAAATTTAATATA
Found at i:828670 original size:189 final size:189
Alignment explanation
Indices: 828365--828932 Score: 1048
Period size: 189 Copynumber: 3.0 Consensus size: 189
828355 ATGTTTAATA
* * *
828365 CATGTA-AGATATTAGAGTTTAAAATTTTTACATATTTAATAATTTATATTATTTTTTATTTTTA
1 CATGTACA-ATATTAGAGTTTAAAATTTTTATACATTTAATAATTTATACTATTTTTTATTTTTA
* * *
828429 TATAATTAATATAAAAAACGAAATGCAAAATACATAAATAAAATGTATAATTGATAATTGTTTTG
65 TATAATTAATATAAAAATCAAAATGCAAAATATATAAATAAAATGTATAATTGATAATTGTTTTG
**
828494 ATAAATTCTGATGCATTGAAAAAAATACATTTATATAATATAATAACAATAAGCAACATT
130 ATAAATTCTGATGCATTGAAAAAAATACATTTATATAATATAATAACAATGCGCAACATT
828554 CATGTACAATATTAGAGTTTAAAATTTTTATACATTTAATAATTTATACTATTTTTTATTTTTAT
1 CATGTACAATATTAGAGTTTAAAATTTTTATACATTTAATAATTTATACTATTTTTTATTTTTAT
828619 ATAATTAATATAAAAATCAAAATGCAAAATATATAAATAAAATGTATAATTGATAATTGTTTTGA
66 ATAATTAATATAAAAATCAAAATGCAAAATATATAAATAAAATGTATAATTGATAATTGTTTTGA
828684 TAAATTCTGATGCATTGAAAAAAATACATTTATATAATATAATAACAATGCGCAACATT
131 TAAATTCTGATGCATTGAAAAAAATACATTTATATAATATAATAACAATGCGCAACATT
828743 CATGTACAATATTAGAGTTTAAAATTTTTATACATTTAATAATTTATACTATTTTTTATTTTTAT
1 CATGTACAATATTAGAGTTTAAAATTTTTATACATTTAATAATTTATACTATTTTTTATTTTTAT
828808 ATAATTAATATAAAAATCAAAATGCAAAATATATAAATAAAATGTATAATTGATAATTGTTTTGA
66 ATAATTAATATAAAAATCAAAATGCAAAATATATAAATAAAATGTATAATTGATAATTGTTTTGA
828873 TAAATTCTGATGCATTGAAAAAAATACATTTATATAATATAATAACAATGCGCAACATT
131 TAAATTCTGATGCATTGAAAAAAATACATTTATATAATATAATAACAATGCGCAACATT
828932 C
1 C
828933 TCAAGTAAAA
Statistics
Matches: 370, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
189 369 1.00
190 1 0.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (189 bp):
CATGTACAATATTAGAGTTTAAAATTTTTATACATTTAATAATTTATACTATTTTTTATTTTTAT
ATAATTAATATAAAAATCAAAATGCAAAATATATAAATAAAATGTATAATTGATAATTGTTTTGA
TAAATTCTGATGCATTGAAAAAAATACATTTATATAATATAATAACAATGCGCAACATT
Found at i:829127 original size:30 final size:29
Alignment explanation
Indices: 829081--829176 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 29
829071 TTAAGAGTTT
* *
829081 ATTTAATATATATATAAATTTAAGGTTAAAA
1 ATTTAAT-TA-ATATAAATTAAAGATTAAAA
* *
829112 CTTTAATTAGATATAAATTAAAAATTAAAA
1 ATTTAATTA-ATATAAATTAAAGATTAAAA
*
829142 ATTTATTTTAATATAAATTAAAGATTAAAA
1 ATTTA-ATTAATATAAATTAAAGATTAAAA
829172 ATTTA
1 ATTTA
829177 TTTGAATGTA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
30 47 0.84
31 9 0.16
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.42
Consensus pattern (29 bp):
ATTTAATTAATATAAATTAAAGATTAAAA
Found at i:829177 original size:30 final size:31
Alignment explanation
Indices: 829092--829179 Score: 117
Period size: 30 Copynumber: 2.9 Consensus size: 31
829082 TTTAATATAT
* * * *
829092 ATATAAATTTAAGGTTAAAACTTTA-ATTAG
1 ATATAAATTAAAGATTAAAAATTTATTTTAG
*
829122 ATATAAATTAAAAATTAAAAATTTATTTTA-
1 ATATAAATTAAAGATTAAAAATTTATTTTAG
829152 ATATAAATTAAAGATTAAAAATTTATTT
1 ATATAAATTAAAGATTAAAAATTTATTT
829180 GAATGTAATA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
30 48 0.94
31 3 0.06
ACGTcount: A:0.52, C:0.01, G:0.05, T:0.42
Consensus pattern (31 bp):
ATATAAATTAAAGATTAAAAATTTATTTTAG
Found at i:829203 original size:30 final size:30
Alignment explanation
Indices: 829122--829207 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
829112 CTTTAATTAG
*
829122 ATATAAATTAAAAATTAAAAATTTATTTTA
1 ATATAAATTAAAAATTAAAAATTTATTTGA
*
829152 ATATAAATTAAAGATTAAAAATTTATTTGA
1 ATATAAATTAAAAATTAAAAATTTATTTGA
*
829182 ATGT-AA-TAAAAATATATAAAATTTAT
1 ATATAAATTAAAAAT-TA-AAAATTTAT
829208 CAAAATAGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.12
29 4 0.08
30 40 0.80
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (30 bp):
ATATAAATTAAAAATTAAAAATTTATTTGA
Found at i:829814 original size:26 final size:26
Alignment explanation
Indices: 829757--829816 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
829747 ATTTTTTAAG
829757 ATTA-TTTTTGTTTTATTCAATTTAT
1 ATTATTTTTTGTTTTATTCAATTTAT
829782 ATT-TTTTTTGTTTTAATT-AAGTTT-T
1 ATTATTTTTTGTTTT-ATTCAA-TTTAT
829807 ATTATTTTTT
1 ATTATTTTTT
829817 TAATTGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
25 19 0.61
26 12 0.39
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.72
Consensus pattern (26 bp):
ATTATTTTTTGTTTTATTCAATTTAT
Found at i:832651 original size:2 final size:2
Alignment explanation
Indices: 832644--832674 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
832634 TGCATGAAAA
832644 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
832675 ATATAACAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:838452 original size:13 final size:14
Alignment explanation
Indices: 838416--838456 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
838406 TTTTAAAAAA
838416 TTAAAATT-TATTT
1 TTAAAATTATATTT
*
838429 TTAATAGTTAT-TTT
1 TTAA-AATTATATTT
838443 TTAAAATTATATTT
1 TTAAAATTATATTT
838457 AAAAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 9 0.39
14 13 0.57
15 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (14 bp):
TTAAAATTATATTT
Found at i:838461 original size:13 final size:13
Alignment explanation
Indices: 838416--838480 Score: 51
Period size: 13 Copynumber: 5.0 Consensus size: 13
838406 TTTTAAAAAA
*
838416 TTAAAATTTATTT
1 TTAAAAATTATTT
* *
838429 TTAATAGTTATTT
1 TTAAAAATTATTT
* *
838442 TTTAAAATTATAT
1 TTAAAAATTATTT
*
838455 TTAAAAA-AATTT
1 TTAAAAATTATTT
*
838467 TAAAAATATTATTT
1 TTAAAA-ATTATTT
838481 ATCTTCGATA
Statistics
Matches: 39, Mismatches: 11, Indels: 3
0.74 0.21 0.06
Matches are distributed among these distances:
12 8 0.21
13 27 0.69
14 4 0.10
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (13 bp):
TTAAAAATTATTT
Found at i:838531 original size:16 final size:17
Alignment explanation
Indices: 838510--838551 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
838500 TTAAAATAAT
*
838510 TTTTTAATTA-TTTTTA
1 TTTTTAATAATTTTTTA
*
838526 TTTTTAAAAATTTTTTA
1 TTTTTAATAATTTTTTA
838543 TTTTATAAT
1 TTTT-TAAT
838552 GTATGACTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 8 0.38
17 10 0.48
18 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTAATAATTTTTTA
Found at i:841569 original size:20 final size:19
Alignment explanation
Indices: 841546--841595 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
841536 AAGTAATTTT
841546 AATATTAAATAAATAATAAA
1 AATATT-AATAAATAATAAA
*
841566 AATAATTAATAATTAATAAA
1 AAT-ATTAATAAATAATAAA
841586 AATATATAAT
1 AATAT-TAAT
841596 TTATTTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AATATTAATAAATAATAAA
Found at i:842151 original size:2 final size:2
Alignment explanation
Indices: 842144--842169 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
842134 GACTTTTCAC
842144 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
842170 ATTATCTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:843486 original size:23 final size:22
Alignment explanation
Indices: 843456--843502 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
843446 AATAAGTTTT
*
843456 TAAA-TTTTAATTTATATCTAAA
1 TAAATTTTTAATTTAAAT-TAAA
843478 TAAATTTTTTAATTTAAATTAAA
1 TAAA-TTTTTAATTTAAATTAAA
843501 TA
1 TA
843503 TAAATCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 6 0.27
24 12 0.55
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TAAATTTTTAATTTAAATTAAA
Found at i:843506 original size:29 final size:30
Alignment explanation
Indices: 843444--843507 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
843434 AAATTGTAAT
* * * *
843444 TAAATAAGTTTTTAAATTTTAATTTATATC
1 TAAATAAATTTTTAAATTTTAAATTAAATA
*
843474 TAAATAAATTTTTTAA-TTTAAATTAAATA
1 TAAATAAATTTTTAAATTTTAAATTAAATA
843503 TAAAT
1 TAAAT
843508 CAAAAGATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (30 bp):
TAAATAAATTTTTAAATTTTAAATTAAATA
Found at i:844997 original size:4 final size:4
Alignment explanation
Indices: 844990--845014 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
844980 ATATATATAA
844990 ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC A
845015 CATTTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:847203 original size:2 final size:2
Alignment explanation
Indices: 847196--847223 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
847186 ACCTTGACTA
847196 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
847224 GTAATTCAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:848633 original size:2 final size:2
Alignment explanation
Indices: 848628--848657 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
848618 GAAAAAAATG
848628 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
848658 ATTTGAGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:848759 original size:21 final size:21
Alignment explanation
Indices: 848697--848762 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
848687 GATCGATTCA
848697 AAAAATTTTA-TTT-TTATTT
1 AAAAATTTTATTTTATTATTT
* *
848716 AATTAAATTTTATTTAAAT-TTT
1 AA--AAATTTTATTTTATTATTT
*
848738 AAATATTTTATTTTATTATTT
1 AAAAATTTTATTTTATTATTT
848759 AAAA
1 AAAA
848763 TACATTAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
19 2 0.06
20 12 0.33
21 14 0.39
22 7 0.19
23 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AAAAATTTTATTTTATTATTT
Found at i:848821 original size:21 final size:21
Alignment explanation
Indices: 848780--848830 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
848770 AATAATTAAA
*
848780 AAATTTAATAAATAATAATTT
1 AAATTTAATAAAAAATAATTT
*
848801 AAATTATAA-AAAAAATTATTT
1 AAATT-TAATAAAAAATAATTT
848822 AAATTTAAT
1 AAATTTAAT
848831 TCAATTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 20 0.77
22 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATTTAATAAAAAATAATTT
Found at i:853423 original size:9 final size:9
Alignment explanation
Indices: 853409--853440 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
853399 TTTATAAATT
853409 TATTTAAAA
1 TATTTAAAA
853418 TATTTAAAA
1 TATTTAAAA
853427 TATTTAAAA
1 TATTTAAAA
853436 TATTT
1 TATTT
853441 TTTATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (9 bp):
TATTTAAAA
Found at i:853451 original size:19 final size:18
Alignment explanation
Indices: 853403--853468 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
853393 GTTCGATTTA
853403 TAAATTTATTTAAAATATT
1 TAAA-TTATTTAAAATATT
*
853422 TAAAATATTTAAAATATTT
1 TAAATTATTTAAAATA-TT
**
853441 TTTATTATTTAAATAATAATT
1 TAAATTATTT-AA-AAT-ATT
853462 TAAATTA
1 TAAATTA
853469 AAACAAACTA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 11 0.30
19 13 0.35
20 2 0.05
21 10 0.27
22 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TAAATTATTTAAAATATT
Found at i:854577 original size:2 final size:2
Alignment explanation
Indices: 854526--854559 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
854516 ATTACTCCTC
*
854526 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
854560 AAGTATGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:856213 original size:16 final size:17
Alignment explanation
Indices: 856192--856247 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 17
856182 TAAATATATT
*
856192 AAAATTTAT-ATAAATA
1 AAAATTAATAATAAATA
*
856208 AAAATTAATAATATATA
1 AAAATTAATAATAAATA
*
856225 AAAA-TAAAATATAAAATA
1 AAAATTAATA-AT-AAATA
856243 AAAAT
1 AAAAT
856248 AAAAAGTATC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 12 0.38
17 12 0.38
18 8 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATTAATAATAAATA
Found at i:856400 original size:5 final size:5
Alignment explanation
Indices: 856390--856431 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
856380 TGATAGTAGA
856390 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
856432 CCTTTGATTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:859729 original size:17 final size:17
Alignment explanation
Indices: 859704--859736 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
859694 TCTAATCGAG
859704 TTAAATTTTATATTTAA
1 TTAAATTTTATATTTAA
*
859721 TTAATTTTTATATTTA
1 TTAAATTTTATATTTA
859737 TATAAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTAAATTTTATATTTAA
Found at i:859783 original size:16 final size:17
Alignment explanation
Indices: 859758--859791 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
859748 ATATTTTAGT
*
859758 TTAAATTAATA-AAAAA
1 TTAAAATAATATAAAAA
859774 TTAAAATAATATAAAAA
1 TTAAAATAATATAAAAA
859791 T
1 T
859792 ATATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TTAAAATAATATAAAAA
Found at i:860840 original size:20 final size:20
Alignment explanation
Indices: 860799--860859 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 20
860789 TAGTTTAAAA
860799 AATTAATATAAATA-AGAT-AT
1 AATT-ATATAAATATA-ATAAT
860819 AATTATATAAATATAATAAT
1 AATTATATAAATATAATAAT
* *
860839 AAATAT-TAATATATAAAAAT
1 AATTATATAA-ATATAATAAT
860859 A
1 A
860860 TAAAATATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
19 14 0.39
20 22 0.61
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AATTATATAAATATAATAAT
Found at i:860849 original size:18 final size:16
Alignment explanation
Indices: 860823--860867 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
860813 AGATATAATT
860823 ATATAAATATAATAATAA
1 ATATAAATAT-ATAA-AA
*
860841 ATATTAATATATAAAA
1 ATATAAATATATAAAA
860857 ATATAAA-ATAT
1 ATATAAATATAT
860868 TTTAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.16
16 8 0.32
17 4 0.16
18 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATAAATATATAAAA
Found at i:860883 original size:22 final size:23
Alignment explanation
Indices: 860820--860883 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
860810 ATAAGATATA
*
860820 ATTATATAAATATAATAAT-AAAT
1 ATTA-ATAAATATAATTATAAAAT
* * *
860843 ATTAATATATAAAAATATAAAAT
1 ATTAATAAATATAATTATAAAAT
*
860866 ATT-TTAAATATAATTATA
1 ATTAATAAATATAATTATA
860884 TGATAATATT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
22 21 0.66
23 11 0.34
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATTAATAAATATAATTATAAAAT
Found at i:861200 original size:30 final size:30
Alignment explanation
Indices: 861144--861201 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
861134 TAATTTTTTT
* **
861144 AATATTAATTAATATATTATTTATAATAAA
1 AATATTAATTAATATATAATGAATAATAAA
861174 AATATTATATTAA-ATATAATGAATAATA
1 AATATTA-ATTAATATATAATGAATAATA
861202 CTTTTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (30 bp):
AATATTAATTAATATATAATGAATAATAAA
Found at i:861472 original size:18 final size:20
Alignment explanation
Indices: 861451--861515 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 20
861441 CGTTTAAAAA
861451 ATATAAAAATA-ATAT-AAT
1 ATATAAAAATATATATAAAT
*
861469 ATATAAAAATATATTTAAAT
1 ATATAAAAATATATATAAAT
* * *
861489 ATATATATATAT-TATTAAT
1 ATATAAAAATATATATAAAT
*
861508 ATTTAAAA
1 ATATAAAA
861516 TTTTAATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
18 11 0.30
19 13 0.35
20 13 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
ATATAAAAATATATATAAAT
Found at i:861481 original size:10 final size:10
Alignment explanation
Indices: 861445--861493 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
861435 ATGATACGTT
861445 TAAAAA-ATA
1 TAAAAATATA
861454 TAAAAATA-A
1 TAAAAATATA
*
861463 T-ATAATATA
1 TAAAAATATA
861472 TAAAAATATA
1 TAAAAATATA
**
861482 TTTAAATATA
1 TAAAAATATA
861492 TA
1 TA
861494 TATATATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
8 5 0.16
9 10 0.31
10 17 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
TAAAAATATA
Found at i:861486 original size:39 final size:41
Alignment explanation
Indices: 861402--861497 Score: 99
Period size: 39 Copynumber: 2.4 Consensus size: 41
861392 ATTTTATAAT
* ** *
861402 TTTAAACATAATATAAAAATATTATATATATATATGATACG
1 TTTAAACATAATATAAAAATAATATATATATATAAAATACA
*
861443 TTTAAA-A-AATATAAAAATAATATA-ATATATAAAAATATA
1 TTTAAACATAATATAAAAATAATATATATATAT-AAAATACA
*
861482 TTTAAATATATATATA
1 TTTAAACATA-ATATA
861498 TATTATTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
38 6 0.13
39 26 0.57
40 2 0.04
41 7 0.15
42 5 0.11
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (41 bp):
TTTAAACATAATATAAAAATAATATATATATATAAAATACA
Found at i:861500 original size:10 final size:10
Alignment explanation
Indices: 861451--861509 Score: 52
Period size: 10 Copynumber: 6.2 Consensus size: 10
861441 CGTTTAAAAA
*
861451 ATATAAAAAT
1 ATATATAAAT
861461 A-ATAT-AAT
1 ATATATAAAT
*
861469 ATATAAAAAT
1 ATATATAAAT
*
861479 ATATTTAAAT
1 ATATATAAAT
*
861489 ATATATATAT
1 ATATATAAAT
*
861499 AT-TATTAAT
1 ATATATAAAT
861508 AT
1 AT
861510 TTAAAATTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
8 4 0.10
9 13 0.33
10 22 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
ATATATAAAT
Found at i:861707 original size:20 final size:20
Alignment explanation
Indices: 861679--861731 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
861669 TTTTTACATT
* *
861679 AAATT-AAAACATTTTTATA
1 AAATTAAAAAAATTATTATA
861698 AAATTAAAAAAATTATTATA
1 AAATTAAAAAAATTATTATA
*
861718 ATAATTACAAAAAT
1 A-AATTAAAAAAAT
861732 CTTTTCATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 5 0.17
20 13 0.45
21 11 0.38
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATTAAAAAAATTATTATA
Found at i:862694 original size:2 final size:2
Alignment explanation
Indices: 862689--862732 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
862679 TGTGTGCGTG
* * *
862689 TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA TT TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
862731 TA
1 TA
862733 AAATTTACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:869679 original size:5 final size:5
Alignment explanation
Indices: 869669--869696 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
869659 TGTATTTATC
869669 TTTGA TTTGA TTTGA TTTGA TTTGA TTT
1 TTTGA TTTGA TTTGA TTTGA TTTGA TTT
869697 TCTTTGACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (5 bp):
TTTGA
Found at i:869702 original size:15 final size:15
Alignment explanation
Indices: 869662--869703 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
869652 TCATAACTGT
869662 ATTTATCTTTGATTTG
1 ATTT-TCTTTGATTTG
**
869678 ATTTGATTTGATTTG
1 ATTTTCTTTGATTTG
869693 ATTTTCTTTGA
1 ATTTTCTTTGA
869704 CCAAGTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.19, C:0.05, G:0.14, T:0.62
Consensus pattern (15 bp):
ATTTTCTTTGATTTG
Found at i:869940 original size:6 final size:6
Alignment explanation
Indices: 869929--869966 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
869919 TTTATTTGAG
*
869929 TTTAAT TTTAAT TTT-AT TTTAAT TTTAAA TTT-AT TTTA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTA
869967 TTATTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.32
6 19 0.68
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:869942 original size:17 final size:17
Alignment explanation
Indices: 869917--869956 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
869907 CCTGTTATTT
*
869917 TTTTTATTTGAGTTTAA
1 TTTTAATTTGAGTTTAA
* *
869934 TTTTAATTTTATTTTAA
1 TTTTAATTTGAGTTTAA
869951 TTTTAA
1 TTTTAA
869957 ATTTATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTAATTTGAGTTTAA
Found at i:869947 original size:11 final size:11
Alignment explanation
Indices: 869918--869968 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
869908 CTGTTATTTT
* *
869918 TTTTATTTGAG
1 TTTTATTTTAA
*
869929 TTTAATTTTAA
1 TTTTATTTTAA
869940 TTTTATTTTAA
1 TTTTATTTTAA
*
869951 TTTTAAATTT-A
1 TTTT-ATTTTAA
869962 TTTTATT
1 TTTTATT
869969 ATTTAAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
10 2 0.06
11 27 0.82
12 4 0.12
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (11 bp):
TTTTATTTTAA
Found at i:869961 original size:17 final size:17
Alignment explanation
Indices: 869929--869966 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
869919 TTTATTTGAG
*
869929 TTTAATTTTAATTTTAT
1 TTTAATTTTAAATTTAT
869946 TTTAATTTTAAATTTAT
1 TTTAATTTTAAATTTAT
869963 TTTA
1 TTTA
869967 TTATTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTAATTTTAAATTTAT
Found at i:870476 original size:2 final size:2
Alignment explanation
Indices: 870469--870500 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
870459 AAAATTGATC
870469 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
870501 TAATTTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:871291 original size:16 final size:16
Alignment explanation
Indices: 871255--871293 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
871245 GAATTAATCG
*
871255 AATTTAAATAATTTTA
1 AATTTAAATAATTTCA
* *
871271 GATTTGAATAATTTCA
1 AATTTAAATAATTTCA
871287 AATTTAA
1 AATTTAA
871294 TTTAATTGAA
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (16 bp):
AATTTAAATAATTTCA
Found at i:880903 original size:13 final size:13
Alignment explanation
Indices: 880885--880925 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
880875 TAATTTGGTT
*
880885 TATTTTTAAAAAA
1 TATTTTGAAAAAA
880898 TATTTTGAGAAAAAA
1 TATTTT--GAAAAAA
880913 TATTTTGAAAAAA
1 TATTTTGAAAAAA
880926 AAAATTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 13 0.52
15 12 0.48
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (13 bp):
TATTTTGAAAAAA
Found at i:880927 original size:15 final size:15
Alignment explanation
Indices: 880892--880927 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
880882 GTTTATTTTT
*
880892 AAAAAATATTTTGAG
1 AAAAAATATTTTGAA
880907 AAAAAATATTTTGAA
1 AAAAAATATTTTGAA
880922 AAAAAA
1 AAAAAA
880928 AATTGAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (15 bp):
AAAAAATATTTTGAA
Found at i:881550 original size:2 final size:2
Alignment explanation
Indices: 881543--881572 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
881533 AAATATTCAA
881543 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
881573 GCATATTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:881688 original size:25 final size:25
Alignment explanation
Indices: 881639--881693 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
881629 GTTTTAAATC
*
881639 TAAATAAATAAAAATTAAGTATTAA
1 TAAATAAACAAAAATTAAGTATTAA
* *
881664 -AAATAAACATAAAATTAATTTTTAA
1 TAAATAAACA-AAAATTAAGTATTAA
881689 TAAAT
1 TAAAT
881694 TATTACAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 8 0.32
25 13 0.52
26 4 0.16
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
TAAATAAACAAAAATTAAGTATTAA
Found at i:881963 original size:19 final size:18
Alignment explanation
Indices: 881939--881986 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
881929 ATATTATTAA
881939 TTTTATCATTTTAAATATT
1 TTTTATCATTTTAAA-ATT
* *
881958 TTTTATTATTAATAAAATT
1 TTTTATCATT-TTAAAATT
881977 TTTT-TCATTT
1 TTTTATCATTT
881987 AATTGATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 4 0.17
19 16 0.67
20 4 0.17
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTATCATTTTAAAATT
Found at i:882724 original size:17 final size:18
Alignment explanation
Indices: 882688--882730 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
882678 TAAAGATTTG
882688 TATTTAATATATAAATAT
1 TATTTAATATATAAATAT
* *
882706 TATTTAA-ATTTATATAT
1 TATTTAATATATAAATAT
882723 TA-TTAATA
1 TATTTAATA
882731 AATTAAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 4 0.18
17 11 0.50
18 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTTAATATATAAATAT
Found at i:882840 original size:24 final size:24
Alignment explanation
Indices: 882794--882841 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
882784 AAATTTTTAA
882794 TAAAATATTATAATTTAATTTATT
1 TAAAATATTATAATTTAATTTATT
882818 TAAAATA-TAT-ATTTATATATTATT
1 TAAAATATTATAATTTA-AT-TTATT
882842 AATATATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 5 0.23
24 12 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TAAAATATTATAATTTAATTTATT
Found at i:882848 original size:23 final size:23
Alignment explanation
Indices: 882797--882848 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
882787 TTTTTAATAA
882797 AATAT-TATAATTTAATTTATTT
1 AATATATATAATTTAATTTATTT
*
882819 AAAATATAT-ATTTATATATTA-TT
1 AATATATATAATTTA-AT-TTATTT
882842 AATATAT
1 AATATAT
882849 CAAATATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 9 0.36
23 13 0.52
24 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
AATATATATAATTTAATTTATTT
Found at i:883150 original size:32 final size:32
Alignment explanation
Indices: 883113--883178 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
883103 TATATTATAA
*
883113 TTATATTTAAAATATTATTTATT-TATAA-AAAT
1 TTATATTT-AAATATT-TATATTATATAATAAAT
*
883145 TTATATTTTAATATTTATATTATATAATAAAT
1 TTATATTTAAATATTTATATTATATAATAAAT
883177 TT
1 TT
883179 TAATATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 5 0.17
31 11 0.37
32 14 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (32 bp):
TTATATTTAAATATTTATATTATATAATAAAT
Found at i:883270 original size:11 final size:11
Alignment explanation
Indices: 883250--883299 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
883240 TTTTAACTTT
* *
883250 TTTATGTTATG
1 TTTATATTATA
883261 TTTATATTATA
1 TTTATATTATA
883272 TTTATATT-T-
1 TTTATATTATA
883281 TTT-TATTATA
1 TTTATATTATA
*
883291 ATTATATTA
1 TTTATATTA
883300 AAAATATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
8 4 0.12
9 4 0.12
10 3 0.09
11 22 0.67
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (11 bp):
TTTATATTATA
Found at i:883404 original size:18 final size:18
Alignment explanation
Indices: 883381--883442 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
883371 TGTTAATATC
*
883381 ATATTTATATTATTTTTT
1 ATATTTATATTATATTTT
883399 ATATTTATATTATATTTT
1 ATATTTATATTATATTTT
* * *
883417 A-A-TTAT-TTTTATATG
1 ATATTTATATTATATTTT
883432 ATATTTATATT
1 ATATTTATATT
883443 GTGTCTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
15 7 0.19
16 5 0.14
17 5 0.14
18 20 0.54
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (18 bp):
ATATTTATATTATATTTT
Found at i:883413 original size:11 final size:11
Alignment explanation
Indices: 883376--883442 Score: 63
Period size: 11 Copynumber: 6.5 Consensus size: 11
883366 ACATATGTTA
*
883376 ATATCATATTT
1 ATATTATATTT
883387 ATA-T-TATTT
1 ATATTATATTT
883396 -T-TTATATTT
1 ATATTATATTT
883405 ATATTATATTT
1 ATATTATATTT
*
883416 -TAATTATTTTT
1 AT-ATTATATTT
*
883427 ATATGATATTT
1 ATATTATATTT
883438 ATATT
1 ATATT
883443 GTGTCTAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
8 2 0.04
9 10 0.22
10 2 0.04
11 30 0.67
12 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (11 bp):
ATATTATATTT
Found at i:883413 original size:29 final size:28
Alignment explanation
Indices: 883376--883430 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
883366 ACATATGTTA
883376 ATATCATA-TTTATATTATTTTTTATATTT
1 ATATCATATTTTA-ATTA-TTTTTATATTT
*
883405 ATATTATATTTTAATTATTTTTATAT
1 ATATCATATTTTAATTATTTTTATAT
883431 GATATTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 9 0.38
29 11 0.46
30 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (28 bp):
ATATCATATTTTAATTATTTTTATATTT
Found at i:883439 original size:28 final size:30
Alignment explanation
Indices: 883376--883442 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 30
883366 ACATATGTTA
* *
883376 ATATCATA-TTTATATTATTTTTTATATTT
1 ATATTATATTTTATATTATTTTTTATATAT
883405 ATATTATATTTTA-ATTA-TTTTTATATGAT
1 ATATTATATTTTATATTATTTTTTATAT-AT
883434 AT-TTATATT
1 ATATTATATT
883443 GTGTCTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 16 0.47
29 14 0.41
30 4 0.12
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (30 bp):
ATATTATATTTTATATTATTTTTTATATAT
Found at i:887619 original size:2 final size:2
Alignment explanation
Indices: 887612--887640 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
887602 AAGTTTTCAT
887612 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
887641 CAAAAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:889852 original size:22 final size:22
Alignment explanation
Indices: 889813--889857 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
889803 ATAATAAAAA
**
889813 ATTTAATTTAATTGATAAATTT
1 ATTTAATTTAATCAATAAATTT
*
889835 ATTTAATTTAATCAATAATTTT
1 ATTTAATTTAATCAATAAATTT
889857 A
1 A
889858 AATACGAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATTTAATTTAATCAATAAATTT
Found at i:890208 original size:32 final size:31
Alignment explanation
Indices: 890172--890250 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 31
890162 ATATGATTAA
890172 TTAAAAATAAATATTAATTAATATATTAAAAT
1 TTAAAAATAAATATT-ATTAATATATTAAAAT
* *
890204 TTAAATATAATTAATTATTAATATATTAAAAT
1 TTAAAAATAAAT-ATTATTAATATATTAAAAT
* *
890236 TATATAAATATATAT
1 T-TAAAAATAAATAT
890251 AATAAAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 29 0.74
33 10 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (31 bp):
TTAAAAATAAATATTATTAATATATTAAAAT
Found at i:890212 original size:16 final size:17
Alignment explanation
Indices: 890191--890239 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
890181 AATATTAATT
890191 AATATATTAAAATT-TA
1 AATATATTAAAATTATA
*
890207 AATATAATT--AATTATT
1 AATAT-ATTAAAATTATA
890223 AATATATTAAAATTATA
1 AATATATTAAAATTATA
890240 TAAATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 7 0.26
16 11 0.41
17 9 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATATTAAAATTATA
Found at i:890224 original size:17 final size:18
Alignment explanation
Indices: 890191--890247 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 18
890181 AATATTAATT
*
890191 AATAT-ATTAAAAT-TTA
1 AATATAATTAAATTATTA
890207 AATATAATT-AATTATT-
1 AATATAATTAAATTATTA
890223 AATAT-ATTAAAATTATATA
1 AATATAATT-AAATTAT-TA
890242 AATATA
1 AATATA
890248 TATAATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
15 3 0.09
16 13 0.39
17 11 0.33
18 1 0.03
19 5 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATAATTAAATTATTA
Found at i:890232 original size:25 final size:26
Alignment explanation
Indices: 890171--890248 Score: 83
Period size: 25 Copynumber: 3.1 Consensus size: 26
890161 TATATGATTA
*
890171 ATTAAAA-ATAAATATTAATTAATAT
1 ATTAAAATTTAAATATTAATTAATAT
890196 ATTAAAATTTAAATA-TAATTAAT-T
1 ATTAAAATTTAAATATTAATTAATAT
* *
890220 ATTAATATATTAAA-ATTATATAAATAT
1 ATTAAAAT-TTAAATATTA-ATTAATAT
890247 AT
1 AT
890249 ATAATAAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
24 9 0.20
25 22 0.49
26 11 0.24
27 3 0.07
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTAAAATTTAAATATTAATTAATAT
Found at i:891176 original size:30 final size:30
Alignment explanation
Indices: 891140--891196 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
891130 TTATTATACT
891140 CAAATAAATTATTAAATTTTAATTTATTAA
1 CAAATAAATTATTAAATTTTAATTTATTAA
*
891170 CAAATAAATTATTAACTTTTAATTTAT
1 CAAATAAATTATTAAATTTTAATTTAT
891197 ATTTATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (30 bp):
CAAATAAATTATTAAATTTTAATTTATTAA
Found at i:891602 original size:20 final size:20
Alignment explanation
Indices: 891573--891614 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
891563 AATATTTTTT
891573 AAAATAAATAAAT-TAAATA
1 AAAATAAATAAATATAAATA
*
891592 AAAATTAAATAATTATAAATA
1 AAAA-TAAATAAATATAAATA
891613 AA
1 AA
891615 TTAAAAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 8 0.40
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATAAATAAATATAAATA
Found at i:892052 original size:12 final size:11
Alignment explanation
Indices: 892033--892074 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
892023 TTTGGATTTT
892033 TTTTTTTTTAC
1 TTTTTTTTTAC
892044 TTTTCTTTTCT-C
1 TTTT-TTTT-TAC
892056 TTTTTTATTTAC
1 TTTTTT-TTTAC
892068 TTTTTTT
1 TTTTTTT
892075 GCCAGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
11 8 0.30
12 18 0.67
13 1 0.04
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTTTTTAC
Found at i:892740 original size:28 final size:28
Alignment explanation
Indices: 892708--892764 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
892698 GTGAAAATTG
892708 TATTTTAATTTTT-T-ATTATTAAATTAAA
1 TATTTT-ATTTTTATAATT-TTAAATTAAA
892736 TATTTTATTTTTATAGATTTTAAATTAAA
1 TATTTTATTTTTATA-ATTTTAAATTAAA
892765 AATTATTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
27 6 0.23
28 7 0.27
29 10 0.38
30 3 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (28 bp):
TATTTTATTTTTATAATTTTAAATTAAA
Found at i:892918 original size:21 final size:20
Alignment explanation
Indices: 892880--892918 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
892870 TCTAAAAATT
* *
892880 TAAATTTATATTATATTTTA
1 TAAAATTATATCATATTTTA
892900 TAAAATTATATCATCATTT
1 TAAAATTATATCAT-ATTT
892919 AAATAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (20 bp):
TAAAATTATATCATATTTTA
Found at i:895230 original size:17 final size:16
Alignment explanation
Indices: 895208--895263 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
895198 AAAATACATA
895208 TTTAAATTTGATTTAAT
1 TTTAAATTT-ATTTAAT
*
895225 TTTAAATTAAATTT-A-
1 TTTAAATT-TATTTAAT
*
895240 TTTAAAATTATTTAATT
1 TTTAAATTTATTTAA-T
895257 TTTAAAT
1 TTTAAAT
895264 AAATTTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 4 0.13
15 8 0.26
16 1 0.03
17 18 0.58
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TTTAAATTTATTTAAT
Found at i:895244 original size:10 final size:10
Alignment explanation
Indices: 895206--895254 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 10
895196 TAAAAATACA
895206 TATTTAAATT
1 TATTTAAATT
*
895216 TGATTTAATTT
1 T-ATTTAAATT
*
895227 TAAATTAAATT
1 T-ATTTAAATT
*
895238 TATTTAAAAT
1 TATTTAAATT
895248 TATTTAA
1 TATTTAA
895255 TTTTTAAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
10 15 0.47
11 17 0.53
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (10 bp):
TATTTAAATT
Found at i:895256 original size:31 final size:32
Alignment explanation
Indices: 895206--895271 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
895196 TAAAAATACA
*
895206 TATTTAAATTTGATTTAA-TTTTAAATTAAATT
1 TATTTAAAATTGATTTAATTTTTAAA-TAAATT
895238 TATTTAAAATT-ATTTAATTTTTAAATAAATT
1 TATTTAAAATTGATTTAATTTTTAAATAAATT
895269 TAT
1 TAT
895272 ATGTCAGTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (32 bp):
TATTTAAAATTGATTTAATTTTTAAATAAATT
Found at i:895712 original size:17 final size:17
Alignment explanation
Indices: 895677--895713 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
895667 ATAAAAATTG
**
895677 ATTTAATAAATTTTGAT
1 ATTTAATAAATTTAAAT
895694 ATTTAATAAATTTAAAT
1 ATTTAATAAATTTAAAT
895711 ATT
1 ATT
895714 CGACAGATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATTTAATAAATTTAAAT
Found at i:896266 original size:32 final size:31
Alignment explanation
Indices: 896225--896285 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 31
896215 ATATATTTTT
896225 ATAATTAAATTAAA-AAAATTATTATTAAATA
1 ATAATTAAATTAAATAAAATTA-TATTAAATA
*
896256 ATAATTTAAATTAAATAAACTTATATTAAA
1 ATAA-TTAAATTAAATAAAATTATATTAAA
896286 ATAAAATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 4 0.15
32 17 0.63
33 6 0.22
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (31 bp):
ATAATTAAATTAAATAAAATTATATTAAATA
Found at i:896285 original size:15 final size:15
Alignment explanation
Indices: 896227--896296 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
896217 ATATTTTTAT
*
896227 AATTAAATTAAA-AA
1 AATTATATTAAATAA
896241 AATTATTATTAAATAA
1 AATTA-TATTAAATAA
*
896257 TAATTTAAATTAAATAA
1 -AA-TTATATTAAATAA
*
896274 ACTTATATTAAAATAA
1 AATTATATT-AAATAA
896290 AA-TATAT
1 AATTATAT
896297 CCAAAACCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
14 5 0.11
15 17 0.37
16 10 0.22
17 11 0.24
18 3 0.07
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATATTAAATAA
Found at i:897256 original size:2 final size:2
Alignment explanation
Indices: 897249--897274 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
897239 AAAAAGTTGG
897249 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
897275 TAATAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:899834 original size:36 final size:38
Alignment explanation
Indices: 899789--899859 Score: 101
Period size: 36 Copynumber: 1.9 Consensus size: 38
899779 TGGTAAATTA
* **
899789 AAATAAATAATTATATTTAAT-TTTTTTAAAAATAAAT
1 AAATAAATAATTATAATTAATATTTAATAAAAATAAAT
899826 AAAT-AATAATTATAATTAATATTTAATAAAAATA
1 AAATAAATAATTATAATTAATATTTAATAAAAATA
899860 TATATTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 15 0.50
37 15 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (38 bp):
AAATAAATAATTATAATTAATATTTAATAAAAATAAAT
Found at i:899852 original size:17 final size:15
Alignment explanation
Indices: 899825--899879 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 15
899815 TAAAAATAAA
*
899825 TAAATAATAATT-A-
1 TAAATAATATTTAAT
*
899838 TAATTAATATTTAAT
1 TAAATAATATTTAAT
*
899853 AAAAATATATATTTAAT
1 -TAAATA-ATATTTAAT
899870 TAAATAATAT
1 TAAATAATAT
899880 AATTTTTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
13 10 0.30
14 1 0.03
15 4 0.12
16 9 0.27
17 9 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAATAATATTTAAT
Found at i:899880 original size:17 final size:17
Alignment explanation
Indices: 899844--899899 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
899834 ATTATAATTA
*
899844 ATATTTAA-TAAAAATAT
1 ATATTTAATTAAATA-AT
899861 ATATTTAATTAAATAAT
1 ATATTTAATTAAATAAT
899878 ATAATTT--TT-AAT-AT
1 AT-ATTTAATTAAATAAT
899892 ATATTTAA
1 ATATTTAA
899900 GAGTTTAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.12
14 4 0.12
15 3 0.09
16 2 0.06
17 12 0.35
18 9 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATTTAATTAAATAAT
Found at i:899880 original size:19 final size:17
Alignment explanation
Indices: 899844--899890 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
899834 ATTATAATTA
899844 ATATTTAATAAAAATAT
1 ATATTTAATAAAAATAT
899861 ATATTTAATTAAATAATAT
1 ATATTTAA-TAAA-AATAT
*
899880 AATTTTTAATA
1 -ATATTTAATA
899891 TATATTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 8 0.31
18 4 0.15
19 7 0.27
20 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATTTAATAAAAATAT
Found at i:901185 original size:22 final size:23
Alignment explanation
Indices: 901145--901210 Score: 68
Period size: 25 Copynumber: 2.9 Consensus size: 23
901135 AAAAAATATT
*
901145 ATAAATA-ATT-AAATTATAAAA
1 ATAAATATATTAAAATAATAAAA
901166 A-AAAT-TATTTAAAATAATAAAA
1 ATAAATATA-TTAAAATAATAAAA
901188 ATTTAAATATATTAAAATAATAA
1 A--TAAATATATTAAAATAATAA
901211 CATTATTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
20 5 0.14
21 3 0.08
22 11 0.30
25 16 0.43
26 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
ATAAATATATTAAAATAATAAAA
Found at i:901193 original size:16 final size:17
Alignment explanation
Indices: 901172--901204 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
901162 AAAAAAAATT
901172 ATTTAAA-ATAATAAAA
1 ATTTAAATATAATAAAA
*
901188 ATTTAAATATATTAAAA
1 ATTTAAATATAATAAAA
901205 TAATAACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTTAAATATAATAAAA
Found at i:902870 original size:7 final size:7
Alignment explanation
Indices: 902836--902869 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
902826 AATATTTAAT
902836 AATTTTA
1 AATTTTA
902843 AATTTTA
1 AATTTTA
902850 AATTTTA
1 AATTTTA
902857 AATTTTA
1 AATTTTA
902864 ATATTT
1 A-ATTT
902870 ATAATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTA
Found at i:902870 original size:14 final size:14
Alignment explanation
Indices: 902835--902877 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
902825 TAATATTTAA
902835 TAAT-TTTAAATTT
1 TAATATTTAAATTT
902848 TAA-ATTTTAAATTT
1 TAATA-TTTAAATTT
902862 TAATATTTATAATTT
1 TAATATTTA-AATTT
902877 T
1 T
902878 TTTACTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.12
14 16 0.62
15 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TAATATTTAAATTT
Found at i:903232 original size:17 final size:19
Alignment explanation
Indices: 903200--903238 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
903190 ATTAGATTAA
903200 ATTTAAATAAAATTTTT-T
1 ATTTAAATAAAATTTTTAT
*
903218 ATTTAAAT-TAATTTTTAT
1 ATTTAAATAAAATTTTTAT
903236 ATT
1 ATT
903239 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTAAATAAAATTTTTAT
Done.