genome.fa.s1672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1672
Parameters: 2 7 7 80 10 50 1000
Length:  67475

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3016--3066	8	5.9	8	86	9	57	86	13	0	0	0.58
3015--3065	10	4.8	10	83	11	66	86	13	0	0	0.58
3015--3066	16	3.2	16	89	7	79	86	13	0	0	0.57
4074--4123	26	1.9	26	95	0	91	36	24	4	36	1.74
4075--4132	26	2.2	26	87	6	82	37	24	1	36	1.66
4293--4325	13	2.4	14	85	5	50	33	15	12	39	1.84
4341--4915	28	20.5	28	84	5	633	29	29	17	24	1.97
4340--4915	223	2.6	224	83	4	723	29	29	17	24	1.97
5015--5127	46	2.5	46	86	2	149	23	27	15	33	1.95
5029--5166	46	3.0	46	83	4	143	20	28	17	34	1.95
5934--6098	20	7.8	20	69	17	102	32	16	11	38	1.85
6023--6055	17	1.9	17	93	0	57	48	12	9	30	1.71
5903--6124	88	2.5	87	88	5	320	30	16	11	40	1.84
8298--8364	27	2.5	27	97	2	127	29	43	7	19	1.78
11584--11608	10	2.5	10	100	0	50	8	28	0	64	1.22
14525--15342	409	2.0	409	98	0	1573	31	19	19	29	1.96
15694--15722	14	2.0	15	93	6	51	68	0	0	31	0.89
15826--15852	13	2.1	13	100	0	54	70	0	0	29	0.88
15824--15888	33	2.0	33	84	6	87	55	1	0	43	1.09
15854--15936	42	1.9	42	83	9	105	43	1	0	55	1.07
15888--15938	17	3.0	18	83	13	56	41	0	0	58	0.98
16345--16395	26	2.1	26	89	10	81	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24210--24258	22	2.0	25	85	14	68	38	0	2	59	1.09
33276--33406	52	2.5	52	92	0	208	31	16	16	35	1.91
33276--33426	52	2.9	51	87	3	196	32	15	17	34	1.92
33415--33439	13	1.9	13	100	0	50	36	16	16	32	1.90
33502--33526	13	1.9	13	100	0	50	32	16	16	36	1.90
34725--34789	33	2.0	33	84	6	87	29	13	15	41	1.86
36870--36912	20	2.1	20	82	4	50	9	32	41	16	1.80
43529--43593	20	3.6	20	73	26	81	27	12	15	44	1.82
43549--43607	13	4.0	13	73	26	55	28	13	15	42	1.85
43529--43626	33	3.0	33	93	3	162	27	13	16	42	1.85
44257--44961	49	14.8	49	82	7	762	31	18	25	24	1.97
44353--44961	189	3.2	187	90	3	938	31	18	26	24	1.97
44303--44956	232	2.8	234	85	5	874	30	18	26	24	1.98
44956--45124	33	5.2	33	90	6	265	18	17	36	27	1.94
44949--45116	65	2.6	65	92	5	272	17	18	34	29	1.94
44949--45116	32	5.3	31	88	8	248	17	18	34	29	1.94
45127--45405	34	8.1	34	82	6	321	34	11	34	19	1.88
45127--45398	71	4.0	68	82	7	345	33	12	34	19	1.89
45127--45398	100	2.6	104	85	6	349	33	12	34	19	1.89
49022--49194	76	2.2	76	89	3	265	32	15	25	26	1.95
51364--51470	20	5.7	20	77	18	97	42	14	14	28	1.85
51403--51433	13	2.4	13	88	0	53	41	16	12	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51388--51452	33	2.0	33	96	0	121	43	15	13	27	1.85
55565--55693	52	2.5	52	98	0	249	27	18	18	34	1.95
55565--55713	52	2.9	51	82	9	185	31	18	16	33	1.93
55769--55866	19	5.8	18	67	28	72	36	15	12	35	1.85
55764--55864	32	3.1	32	95	1	175	35	15	11	36	1.85
55788--55842	13	3.8	13	75	25	56	32	14	14	38	1.87
56166--56399	61	3.9	61	83	6	298	27	20	26	24	1.99
56224--56631	215	1.9	214	85	4	561	26	20	27	24	1.99
56439--56695	55	4.5	56	82	8	272	23	21	28	26	1.99
56165--56790	270	2.3	271	85	4	814	26	20	28	24	1.99
57767--57839	1	73.0	1	75	0	65	0	1	10	87	0.60
57774--57836	6	10.5	6	86	9	85	0	0	12	87	0.55
57774--57838	31	2.1	31	94	0	112	0	0	12	87	0.54
57778--57837	18	3.2	18	95	4	102	0	0	11	88	0.52
57768--57839	13	5.5	13	85	11	85	0	1	11	87	0.61

Tables:   1

The End!