genome.fa.s1675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1675
Parameters: 2 7 7 80 10 50 1000
Length:  80606

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1698--2667	156	6.2	154	80	8	941	37	21	18	22	1.94
1705--2667	312	3.1	308	83	4	1073	37	21	18	23	1.94
3133--3503	128	2.9	124	79	8	379	40	13	11	34	1.81
4863--5263	166	2.4	165	84	6	530	50	10	10	28	1.71
6450--6488	2	19.5	2	100	0	78	0	48	0	51	1.00
9374--9419	6	7.8	6	85	4	58	0	19	0	80	0.71
9371--9420	23	2.2	22	86	6	73	0	18	0	82	0.68
9377--9419	17	2.4	18	88	7	70	0	20	0	79	0.74
9383--9420	20	1.9	20	94	0	67	0	21	0	78	0.74
10910--10963	20	2.7	20	73	2	54	33	12	14	38	1.85
12197--12586	199	1.9	203	81	4	468	48	5	8	37	1.56
15191--15233	18	2.3	19	80	4	52	53	0	0	46	1.00
19730--19763	11	3.1	11	86	0	50	32	2	2	61	1.26
19728--19771	14	3.0	14	87	12	54	31	2	2	63	1.19
20206--20257	10	5.0	10	76	4	50	57	0	0	42	0.98
20205--20266	16	3.9	16	79	8	72	59	1	0	38	1.07
23509--23560	23	2.2	23	83	13	70	65	1	5	26	1.26
29202--29320	42	2.8	42	92	0	193	8	46	2	42	1.47
29235--29310	12	6.9	11	75	15	52	9	48	2	39	1.49
29226--29311	24	3.8	24	72	17	85	10	45	2	41	1.51
29217--29287	18	3.6	18	69	20	52	9	43	2	43	1.52
31430--31472	21	2.0	21	86	8	61	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31970--32016	2	23.5	2	100	0	94	48	0	0	51	1.00
36278--36322	8	5.8	8	89	5	74	13	0	8	77	0.98
36268--36340	16	4.5	16	81	10	69	12	4	5	78	1.07
36278--36322	15	2.9	15	93	3	72	13	0	8	77	0.98
36279--36340	16	3.9	16	83	8	72	12	3	6	77	1.08
36270--36339	8	8.8	8	80	12	54	11	4	5	78	1.06
36302--36340	17	2.3	17	90	0	60	12	5	2	79	1.00
36675--37490	271	3.0	272	93	0	1411	34	19	10	34	1.87
39759--39812	21	2.7	19	85	5	72	37	12	16	33	1.87
39759--39875	19	6.7	19	70	23	96	33	12	19	34	1.90
39781--39883	32	3.2	32	98	0	197	31	12	21	34	1.91
40239--40306	19	3.9	19	72	21	67	36	10	14	38	1.81
40241--40301	32	1.9	32	93	0	104	36	9	16	37	1.82
40346--40371	13	2.0	13	100	0	52	30	15	15	38	1.88
40326--40392	33	2.0	33	88	0	98	25	14	16	43	1.86
42725--42856	50	2.6	49	80	7	156	32	24	9	34	1.87
42845--42916	28	2.6	28	84	0	90	23	33	18	25	1.97
46119--46251	51	2.6	50	81	8	151	32	23	9	34	1.87
46240--46311	28	2.6	28	84	0	90	23	33	18	25	1.97
52550--53385	55	15.3	55	90	4	1259	29	29	19	21	1.98
53213--53306	47	2.0	47	95	0	170	32	26	20	20	1.97
53158--53354	102	1.9	102	87	4	290	29	27	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54202--54269	19	3.9	19	78	21	85	36	11	14	36	1.83
54205--54266	32	1.9	32	96	0	115	37	12	16	33	1.87
54224--54254	13	2.3	14	94	5	55	41	12	16	29	1.85
54309--54334	13	2.0	13	100	0	52	30	15	15	38	1.88
54289--54355	33	2.0	33	88	0	98	25	14	16	43	1.86
54864--54895	11	3.1	11	86	13	50	78	21	0	0	0.76
56687--56819	51	2.6	50	81	10	153	33	24	9	33	1.88
56831--57034	79	2.6	79	80	3	196	25	27	15	30	1.96
67124--67213	46	2.0	46	100	0	180	26	12	20	41	1.87

Tables:   1

The End!