Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1677
Parameters: 2 7 7 80 10 50 1000
Length:  15061

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3758--3885
52
2.5
52
92
3
206
31
17
17
34
1.93
3758--3905
52
2.9
50
84
12
176
32
16
17
33
1.93
3894--3918
13
1.9
13
100
0
50
36
16
16
32
1.90
3959--4025
33
2.0
33
88
0
98
40
13
11
34
1.81
3981--4005
13
1.9
13
100
0
50
32
16
16
36
1.90
4807--5441
49
12.9
54
78
15
332
30
17
26
25
1.97
4871--5441
49
11.7
49
86
5
793
29
18
26
25
1.98
5441--5612
33
5.2
33
92
6
294
19
17
35
27
1.94
5616--6333
37
21.4
34
78
17
665
33
12
32
21
1.91
5657--6189
170
3.1
163
91
6
752
31
13
33
21
1.91
5848--6326
34
14.1
33
81
14
493
33
12
33
21
1.91
5616--6326
71
10.6
67
79
15
653
33
12
33
21
1.91
6297--6380
30
2.7
31
85
7
109
30
17
26
25
1.97
11886--11918
16
2.0
17
88
5
50
24
9
9
57
1.58
14617--14731
51
2.3
51
83
6
144
31
19
20
29
1.97
14786--14852
33
2.0
33
88
0
98
40
13
11
34
1.81
14808--14832
13
1.9
13
100
0
50
32
16
16
36
1.90

Tables:   1

The End!