genome.fa.s1678.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1678
Parameters: 2 7 7 80 10 50 1000
Length:  64712

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1901--2133	79	2.9	77	77	9	229	27	23	14	34	1.94
1899--2165	78	3.4	77	74	10	213	27	21	13	37	1.91
2579--2648	33	2.1	33	84	5	88	32	11	15	40	1.83
5205--5247	20	2.2	20	95	0	77	48	11	18	20	1.79
8758--8799	20	2.0	21	95	4	77	40	11	19	28	1.87
10645--10686	22	1.9	22	90	0	66	40	4	33	21	1.74
11279--11305	13	2.1	13	100	0	54	29	14	14	40	1.86
11371--11408	20	1.9	20	88	0	58	36	15	13	34	1.87
11357--11443	33	2.6	33	87	3	113	35	12	16	35	1.86
13482--13523	22	2.0	21	81	13	50	35	2	4	57	1.33
16206--16252	16	2.7	17	77	12	51	40	4	4	51	1.41
18231--18316	33	2.7	32	84	8	95	36	16	12	34	1.87
18264--18301	20	1.9	20	88	0	58	34	13	15	36	1.87
18370--18396	13	2.1	13	100	0	54	40	14	14	29	1.86
18990--19031	22	1.9	22	90	0	66	21	33	4	40	1.74
20746--20789	22	2.0	23	82	13	56	56	4	15	22	1.57
20876--20917	20	2.0	21	95	4	77	28	19	11	40	1.87
24427--24469	20	2.2	20	95	0	77	20	18	11	48	1.79
27028--27097	33	2.1	33	84	5	88	40	15	11	32	1.83
27120--27161	20	2.2	19	88	12	68	33	19	9	38	1.84
27496--27787	79	3.7	77	77	7	246	35	14	23	27	1.93
27755--27862	49	2.2	50	84	1	137	46	14	16	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30798--31102	84	3.6	85	77	11	284	42	12	24	20	1.86
30878--31098	45	5.1	45	71	16	171	43	11	24	20	1.85
31094--31555	123	3.8	121	82	4	498	30	18	25	24	1.98
31093--31560	61	7.6	62	79	8	454	31	18	25	24	1.98
31556--31672	41	2.8	41	76	3	110	39	11	23	24	1.89
31921--31991	20	3.5	20	78	0	88	35	9	12	42	1.76
31921--31998	40	2.0	39	92	2	129	34	10	12	42	1.77
32901--32956	22	2.5	23	94	5	105	17	10	8	62	1.52
32909--32963	22	2.6	21	88	5	58	20	9	9	61	1.52
39370--39397	14	2.0	14	100	0	56	85	14	0	0	0.59
40449--40995	27	20.0	27	89	2	799	23	33	13	29	1.93
40449--40995	82	6.7	81	90	3	837	23	33	13	29	1.93
40449--40995	109	5.0	108	90	2	808	23	33	13	29	1.93
40978--41515	32	16.8	32	95	0	916	31	34	18	16	1.93
42043--42117	20	3.8	20	78	0	87	34	13	12	40	1.81
42043--42120	40	2.0	39	87	2	111	34	12	12	39	1.82
43028--43083	22	2.5	23	94	5	105	17	10	8	62	1.52
43036--43090	22	2.6	21	88	5	58	20	9	9	61	1.52
46832--46900	27	2.5	27	88	6	95	24	30	21	23	1.99
46887--47056	52	3.3	53	73	12	147	29	25	12	32	1.93
46716--47112	212	1.9	212	85	4	557	28	25	13	31	1.94
47150--47204	28	1.9	29	88	3	85	20	23	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47068--47274	79	2.6	79	82	1	236	24	28	16	29	1.97
59677--59725	14	3.4	14	91	2	71	87	8	4	0	0.65
60700--60786	26	3.3	26	70	17	88	27	34	18	19	1.95
60700--61215	55	9.4	55	86	7	678	27	31	20	20	1.98
60700--61215	220	2.4	218	89	4	792	27	31	20	20	1.98
61806--61862	21	2.7	22	89	8	91	33	10	21	35	1.87
61989--62013	13	1.9	13	100	0	50	32	16	16	36	1.90
64443--64507	25	2.5	26	78	14	71	26	27	21	24	1.99

Tables:   1

The End!