Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1679
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68998
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Found at i:4229 original size:34 final size:34
Alignment explanation
Indices: 4123--4301 Score: 220
Period size: 34 Copynumber: 5.1 Consensus size: 34
4113 TTTTTTCTTT
* *
4123 AAAGCCCACAACTCCGCGGCACCTTGTTCCTTTT-
1 AAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTC
*
4157 -AAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-C-TTCT-TCTTTTC
4193 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTC
4227 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTT-
1 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTC
** *
4260 AAAGCCCACAACTTTGTGGCACTCTTTTTTCTTTTTC
1 AAAGCCCACAACTCCGTGGCAC-C-TTCTTC-TTTTC
4297 AAAGC
1 AAAGC
4302 TTTACATCTT
Statistics
Matches: 130, Mismatches: 6, Indels: 15
0.86 0.04 0.10
Matches are distributed among these distances:
33 40 0.31
34 42 0.32
35 16 0.12
36 6 0.05
37 26 0.20
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.32
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTC
Found at i:5387 original size:93 final size:93
Alignment explanation
Indices: 5228--5410 Score: 294
Period size: 93 Copynumber: 2.0 Consensus size: 93
5218 CATACTTCCA
*
5228 ATCATGCCATAGAAATCCCCAATCACGAGGGATACTAAGTCGAACGCCCCTCACTTGCCCTATCG
1 ATCATGCCATAAAAATCCCCAATCACGAGGGATACTAAGTCGAACGCCCCTCACTTGCCCTATCG
5293 CCGGGGTCGAGCGCACGTTACGACACCC
66 CCGGGGTCGAGCGCACGTTACGACACCC
** * * ** *
5321 ATCATGCCATAAAAATCCCCAATCGTGAGGGATATTAAGTCGAGCGTGCCTCATTTGCCCTATCG
1 ATCATGCCATAAAAATCCCCAATCACGAGGGATACTAAGTCGAACGCCCCTCACTTGCCCTATCG
5386 CCGGGGTCGAGCGCACGTTACGACA
66 CCGGGGTCGAGCGCACGTTACGACA
5411 AAGATAATTT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 82 1.00
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.20
Consensus pattern (93 bp):
ATCATGCCATAAAAATCCCCAATCACGAGGGATACTAAGTCGAACGCCCCTCACTTGCCCTATCG
CCGGGGTCGAGCGCACGTTACGACACCC
Found at i:5693 original size:16 final size:16
Alignment explanation
Indices: 5674--5704 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
5664 AAATAGCTTG
5674 AATTCAAAATAATCTA
1 AATTCAAAATAATCTA
5690 AATTCAAAATAATCT
1 AATTCAAAATAATCT
5705 GAATATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (16 bp):
AATTCAAAATAATCTA
Found at i:19418 original size:13 final size:13
Alignment explanation
Indices: 19400--19425 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19390 ACAAAGATCC
19400 ATGTATCGATACA
1 ATGTATCGATACA
19413 ATGTATCGATACA
1 ATGTATCGATACA
19426 TTTCGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:19437 original size:20 final size:20
Alignment explanation
Indices: 19412--19449 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
19402 GTATCGATAC
19412 AATGTATCGATACATTTCGT
1 AATGTATCGATACATTTCGT
19432 AATGTATCGATACATTTC
1 AATGTATCGATACATTTC
19450 CTTGGTAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTTCGT
Found at i:19487 original size:13 final size:13
Alignment explanation
Indices: 19469--19520 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
19459 AGCTTCGTAG
19469 CGATACATTGTAT
1 CGATACATTGTAT
19482 CGATACAACACTTATGTAT
1 CGAT---ACA-TT--GTAT
19501 CGATACATTGTAT
1 CGATACATTGTAT
19514 CGATACA
1 CGATACA
19521 AATTGTTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 15 0.45
15 2 0.06
16 6 0.18
17 2 0.06
19 8 0.24
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:20327 original size:49 final size:49
Alignment explanation
Indices: 20206--20798 Score: 451
Period size: 49 Copynumber: 12.9 Consensus size: 49
20196 TGAAGAAGAA
** *
20206 TGCCAATGTGCTGAGACAAGGCCAGCGACATTGGGCTTTAAAGATGACGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGAC-TTAAAGAT---GAAGG
* * * *
20259 TACCAATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
20308 TGCCAATGTGCTGAGTCAAGGCCAGCGACATTGGACTTAAAAAGGAA--
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * * *
20355 TGCCAATGTGTTTATTCAAGGCCAACGACATTGG-GTT----TTAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
20399 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGG-GTT-----T----G
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
20438 TGTCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
20487 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT-AA-A-G-A--
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
*
20530 TGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTT----A--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
20573 TGCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGAAGAA--
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * ** *
20620 TGCCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGAT-TAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGAAGG
* * * *
20669 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTT---G-T----G
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
20710 T--CAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * **
20757 TGCCAATATGCTGATTCAAGGCTAGCGATGTTGGACTTAAAG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
20799 GTGATGGAGT
Statistics
Matches: 442, Mismatches: 64, Indels: 72
0.76 0.11 0.12
Matches are distributed among these distances:
39 64 0.14
40 2 0.00
41 4 0.01
42 3 0.01
43 72 0.16
44 34 0.08
45 3 0.01
46 2 0.00
47 64 0.14
48 15 0.03
49 142 0.32
52 8 0.02
53 29 0.07
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
Found at i:20456 original size:39 final size:41
Alignment explanation
Indices: 20355--20741 Score: 190
Period size: 43 Copynumber: 8.8 Consensus size: 41
20345 TAAAAAGGAA
* *
20355 TGCCAATGTGTTTATTCAAGGCCAACGACATTGGGTTTTAAAGG
1 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGGTTTT--A-G
* *
20399 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGG-TTT-G
1 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGGTTTTAG
*
20438 TGTCAATGTGTTGATTCAAGGCCAGCGACATT-GGTCTTAAAGATAAAGG
1 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGGT-TT-----T--A-G
* * * * * **
20487 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
1 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGG-GTTTTAG
* * * **
20529 ATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAGG
1 -TGCCAATGTGTTGATTCAAGGCCAGCGACATTGG-GTTTTA-G
* * * **
20573 TGCCAATGTGCTGATTCAAGGCCAGTGACATTGGACTTAAAGAAG
1 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGG-GTT---TTAG
*
20618 AATGCCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGATTAGG
1 --TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGG--TT-----TTA-G
* * * * *
20669 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGG-CTT-G
1 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGGTTTTAG
* * *
20708 TGTCAATGTGCTGATTCAAGGCTAGCGACATTGG
1 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGG
20742 TCTTAAAGAT
Statistics
Matches: 280, Mismatches: 38, Indels: 55
0.75 0.10 0.15
Matches are distributed among these distances:
38 2 0.01
39 62 0.22
40 2 0.01
41 2 0.01
42 1 0.00
43 77 0.28
44 32 0.11
45 2 0.01
46 2 0.01
47 31 0.11
48 2 0.01
49 58 0.21
50 5 0.02
51 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (41 bp):
TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGGTTTTAG
Found at i:20520 original size:88 final size:91
Alignment explanation
Indices: 20270--20796 Score: 525
Period size: 88 Copynumber: 5.9 Consensus size: 91
20260 ACCAATATAC
* * * * *
20270 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCG
1 TGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCG
20335 ACATTGGACTTAAAAAGGAATGCCAATGTGT
66 ACATTGGACTT---AA-G-ATGCCAATGTGT
* * * *
20366 TTATTCAAGGCCAACGACATTGGGT-TT-----TAAAGGTGCCAATGTGCTGATTCAAGGCTAGC
1 TGATTCAAGGCCAGCGACATT-GGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
* * *
20425 GACATTGG-GTT-TG-TGTCAATGTGT
65 GACATTGGACTTAAGATGCCAATGTGT
*
20449 TGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACG
1 TGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCG
* *
20514 ATATTGGACTTAAAGATGCCAATGTGC
66 ACATTGGACTT-AAGATGCCAATGTGT
* * * *
20541 TAATTCAAGGCCAGCGACATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAGTG
1 TGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCG
20600 ACATTGGACTTAAAGAAGAATGCCAATGTGT
66 ACATTGGACTT----AAG-ATGCCAATGTGT
* * * *
20631 TGATTCAAGGCCAACGACATTGGGTTTTAAAGAT-TAGGTGCCAATATGCTGATTCAAGGCTAGC
1 TGATTCAAGGCCAGCGACATT-GGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGC
* * * *
20695 GATATTGGGCTT--G-TGTCAATGTGC
65 GACATTGGACTTAAGATGCCAATGTGT
* *
20719 TGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCG
1 TGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCG
**
20784 ATGTTGGACTTAA
66 ACATTGGACTTAA
20797 AGGTGATGGA
Statistics
Matches: 360, Mismatches: 46, Indels: 56
0.78 0.10 0.12
Matches are distributed among these distances:
82 3 0.01
83 31 0.09
85 1 0.00
86 40 0.11
87 11 0.03
88 103 0.29
89 5 0.01
90 33 0.09
91 41 0.11
92 33 0.09
96 56 0.16
97 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (91 bp):
TGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCG
ACATTGGACTTAAGATGCCAATGTGT
Found at i:20793 original size:270 final size:267
Alignment explanation
Indices: 20272--20798 Score: 835
Period size: 270 Copynumber: 1.9 Consensus size: 267
20262 CAATATACTG
*
20272 ATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCGAC
1 ATTCAAGGCCAGCGACATTGGACTT--A-A-GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCGAC
*
20337 ATTGGACTTAAAAAGGAATGCCAATGTGTTTATTCAAGGCCAACGACATTGGGTTTTAAAGGTGC
62 ATTGGACTTAAAAAGGAATGCCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGGTGC
* * *
20402 CAATGTGCTGATTCAAGGCTAGCGACATTGGGTTTGTGTCAATGTGTTGATTCAAGGCCAGCGAC
127 CAATATGCTGATTCAAGGCTAGCGACATTGGGCTTGTGTCAATGTGCTGATTCAAGGCCAGCGAC
20467 ATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
192 ATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
20532 CCAATGTGCTA
257 CCAATGTGCTA
* *
20543 ATTCAAGGCCAGCGACATTGGACTT-A-AAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTG
1 ATTCAAGGCCAGCGACATTGGACTTAAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCGACATTG
20606 GACTTAAAGAA-GAATGCCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGATTAGGT
66 GACTTAAA-AAGGAATGCCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTT--A-A--AGGT
* *
20670 GCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTGTGTCAATGTGCTGATTCAAGGCTAGCG
125 GCCAATATGCTGATTCAAGGCTAGCGACATTGGGCTTGTGTCAATGTGCTGATTCAAGGCCAGCG
* * *
20735 ACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATGTTGGACTTAAAG
190 ACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
20799 GTGATGGAGT
Statistics
Matches: 238, Mismatches: 12, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
265 84 0.35
266 2 0.01
267 2 0.01
268 1 0.00
270 125 0.53
271 24 0.10
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (267 bp):
ATTCAAGGCCAGCGACATTGGACTTAAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCGACATTG
GACTTAAAAAGGAATGCCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGGTGCCAAT
ATGCTGATTCAAGGCTAGCGACATTGGGCTTGTGTCAATGTGCTGATTCAAGGCCAGCGACATTG
GTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGCCAA
TGTGCTA
Found at i:20910 original size:34 final size:34
Alignment explanation
Indices: 20804--22161 Score: 1484
Period size: 34 Copynumber: 40.4 Consensus size: 34
20794 TAAAGGTGAT
*
20804 GGAGTTGTGGAC-TTAAAAAGAAAAAGATGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
*
20837 GGAGTTGTGGACTTTTAAAAAGAAAAAGGTGCCAT
1 GGAGTTGTGGAC-TTTAAAAAGAAAAAGGTGCCAC
* *
20872 GGAGTTGTGGAC-TTAAAAGGAAAAATAGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAA-GGTGCCAC
*
20906 GGAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAG-GTGCCAC
*
20940 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * *
20974 GAAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
*
21006 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * *
21040 GGAGTTGTGGACTTT--GAAG-AAAAGGATGCTAT
1 GGAGTTGTGGACTTTAAAAAGAAAAAGG-TGCCAC
*
21072 TGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
*
21106 GGAGTTGTGGACTTT--GAAG-AAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGG-TGCCAC
* *
21138 TGAGTTATGGACTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * *
21172 GGAGTTGTGGGCTTTAAAAAAAAAAAGGTACCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * *
21206 GGAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCAG
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
*
21238 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCAC
* * * *
21274 TGAGTCGTGGACTTTAGAAA-AAAAAGGTGTCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
21307 GGAGTTGTGGAC-TT-AAAAGTAAAAAGAGTGCCAC
1 GGAGTTGTGGACTTTAAAAAG-AAAAAG-GTGCCAC
*
21341 GGAGTTGT-GAGCTTTAAAAAGAAAAAGGTGTCAC
1 GGAGTTGTGGA-CTTTAAAAAGAAAAAGGTGCCAC
* *
21375 GGAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
*
21407 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCAC
* * **
21443 TGAGTCGTGGA-TTT-TGAAG-AAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGG-TGCCAC
* *
21475 TGAGTCGTGGACTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* *
21509 GAAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAG-GTGCCAC
*
21543 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* *
21577 GGAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* *
21609 GGAGTTGTGGGCTTTAAAAAGAAAAAGGCGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * * *
21643 GGTGTTGTGGAC-TT-GAAAGGAAAAGGTGCCAG
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
*
21675 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCAC
* * * *
21711 TGAGTCGTGGACTTTAGAAA-AAAAAGGTGTCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
21744 GGAGTTGTGGAC-TT-AAAAGTAAAAAGAGTGCCAC
1 GGAGTTGTGGACTTTAAAAAG-AAAAAG-GTGCCAC
* *
21778 GAAGTTGT-GAGCTTTAAAAAGAAAAAGGTGTCAC
1 GGAGTTGTGGA-CTTTAAAAAGAAAAAGGTGCCAC
* * *
21812 GGAGTTGTAGAC-TT-GAAAGGAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
*
21844 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCAC
* *
21880 TGAGTCGTGGACTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* *
21914 GAAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAG-GTGCCAC
*
21948 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* *
21982 GGAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* *
22014 GGAGTTGTGGGCTTTAAAAAGAAAAAGGCGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* *
22048 GGTGTTGTGGAC-TTGAAAAG-AAAAGGTGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * *
22080 AGAGTTGTGGGCTTTAAATAGAAAAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCAC
* * * *
22116 TGAGTCGTAGACTTT--GAAG-AAAAGGATGCCAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGG-TGCCAC
* *
22148 TGAGTCGTGGACTT
1 GGAGTTGTGGACTT
22162 CGAAAAGAGA
Statistics
Matches: 1121, Mismatches: 144, Indels: 121
0.81 0.10 0.09
Matches are distributed among these distances:
31 18 0.02
32 296 0.26
33 140 0.12
34 412 0.37
35 148 0.13
36 107 0.10
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (34 bp):
GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
Found at i:21027 original size:66 final size:66
Alignment explanation
Indices: 20804--22161 Score: 1478
Period size: 66 Copynumber: 20.2 Consensus size: 66
20794 TAAAGGTGAT
* * *
20804 GGAGTTGTGGAC-TTAAAAAGAAAAAGATGCCACGGAGTTGTGGACTTTTAAAAAGAAAAAGGTG
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC--TT-GAAAGGAAAAGGTG
*
20868 CCAT
63 CCAC
* * *
20872 GGAGTTGTGGAC-TTAAAAGGAAAAATAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTG
1 GGAGTTGTGGACTTTAAAAAGAAAAA-GGTGCCACGGAGTTGTGGACTTGAAAGG-AAAAG-GTG
20936 CCAC
63 CCAC
* *
20940 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGACTTGAAAGGAAAAGGTGCCA
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
21005 C
66 C
*
21006 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTG-AA-GAAAAGGATGC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAGG-TGC
* *
21069 TAT
64 CAC
*
21072 TGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTG-AA-GAAAAGGATGC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TTGAAAGGAAAAGG-TGC
21135 CAC
64 CAC
* * * * ** *
21138 TGAGTTATGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAAAAAAAGGTAC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TT-GAAAGGAAAAGGTGC
21203 CAC
64 CAC
* * * * * *
21206 GGAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCAGGGAGTTGTGGGCTTTAAAAAGAAAAAAGGAT
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TT-GAAAG-GAAAAGG-T
21269 GCCAC
62 GCCAC
* * * * * *
21274 TGAGTCGTGGACTTTAGAAA-AAAAAGGTGTCACGGAGTTGTGGACTTAAAAGTAAAAAGAGTGC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAG-GAAAAG-GTGC
21338 CAC
64 CAC
*
21341 GGAGTTGT-GAGCTTTAAAAAGAAAAAGGTGTCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCC
1 GGAGTTGTGGA-CTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCC
21405 AC
65 AC
* * * *
21407 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGATTTTG-AA-GAAAAGGAT
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCACGGAGTTGTGGA-CTTGAAAGGAAAAGG-T
21470 GCCAC
62 GCCAC
* * * *
21475 TGAGTCGTGGACTTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGTGC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGG-AAAAG-GTGC
21540 CAC
64 CAC
*
21543 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
21608 C
66 C
* * *
21609 GGAGTTGTGGGCTTTAAAAAGAAAAAGGCGCCACGGTGTTGTGGACTTGAAAGGAAAAGGTGCCA
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
*
21674 G
66 C
* * * *
21675 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGACTTTAGAAA-AAAAAGGT
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCACGGAGTTGTGGAC-TT-GAAAGGAAAAGGT
*
21739 GTCAC
62 GCCAC
* * *
21744 GGAGTTGTGGAC-TT-AAAAGTAAAAAGAGTGCCACGAAGTTGT-GAGCTTTAAAAAGAAAAAGG
1 GGAGTTGTGGACTTTAAAAAG-AAAAAG-GTGCCACGGAGTTGTGGA-C-TT-GAAAGGAAAAGG
*
21806 TGTCAC
61 TGCCAC
* * * * * *
21812 GGAGTTGTAGAC-TT-GAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAAGGAT
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TT-GAAAG-GAAAAGG-T
21875 GCCAC
62 GCCAC
* * * *
21880 TGAGTCGTGGACTTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGTGC
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGG-AAAAG-GTGC
21945 CAC
64 CAC
*
21948 GGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
22013 C
66 C
* * * *
22014 GGAGTTGTGGGCTTTAAAAAGAAAAAGGCGCCACGGTGTTGTGGACTTGAAAAGAAAAGGTGCCA
1 GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
22079 C
66 C
* * * * * *
22080 AGAGTTGTGGGCTTTAAATAGAAAAAAGGATGCCACTGAGTCGTAGACTTTG-AA-GAAAAGGAT
1 GGAGTTGTGGACTTTAAAAAG-AAAAAGG-TGCCACGGAGTTGTGGAC-TTGAAAGGAAAAGG-T
22143 GCCAC
62 GCCAC
* *
22148 TGAGTCGTGGACTT
1 GGAGTTGTGGACTT
22162 CGAAAAGAGA
Statistics
Matches: 1140, Mismatches: 107, Indels: 86
0.86 0.08 0.06
Matches are distributed among these distances:
65 9 0.01
66 456 0.40
67 157 0.14
68 390 0.34
69 94 0.08
70 34 0.03
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (66 bp):
GGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCA
C
Found at i:21636 original size:437 final size:435
Alignment explanation
Indices: 20804--22089 Score: 1793
Period size: 437 Copynumber: 2.9 Consensus size: 435
20794 TAAAGGTGAT
* * * *
20804 GGAGTTGTGGAC-TTAAAAAG-AAAAA-GATGCCACGGAGTTGTGGACTTTTAAAAAGAAAAAGG
1 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGAC-TTTAGAAA-AAAAAGG
* * * * *
20866 TGCCATGGAGTTGTGGACTTAAAAGGAAAAATAGTGCCACGGAGTTGTG-GAC-TTAAAAGGAAA
64 TGTCACGGAGTTGTGGACTTAAAAGTAAAAAGAGTGCCACGGAGTTGTGAG-CTTTAAAAAGAAA
* * * * * * *
20929 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGAC-TT-GAAA
128 AAG-GTGTCACGGAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
* * * *
20992 G-GAAAAGG-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTT
190 GAAAAAAGGATGCCACTGAGTCGT-GGATTTAAAAAGAAAAAGGTGCCAC-GAGTTGTGGACTTT
* * *
21055 --GAAG-AAAAGGATGCTATTGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGA
253 AAAAAGAAAAAGG-TGCCA-CGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGA
* * *
21117 CTTTGAAGAAAAGGATGCCACTGAGTTATGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGG
316 CTTTAAAGAAAAGG-TGCCACGGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGG
* *
21182 GCTTTAAAAAAAAAAAGGTACCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCAG
380 GCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCAG
21238 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGACTTTAGAAAAAAAAGGTG
1 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGACTTTAGAAAAAAAAGGTG
21303 TCACGGAGTTGTGGACTTAAAAGTAAAAAGAGTGCCACGGAGTTGTGAGCTTTAAAAAGAAAAAG
66 TCACGGAGTTGTGGACTTAAAAGTAAAAAGAGTGCCACGGAGTTGTGAGCTTTAAAAAGAAAAAG
21368 GTGTCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
131 GTGTCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
** *
21433 AGGATGCCACTGAGTCGTGGATTT-TGAAG-AAAAGGATGCCACTGAGTCGTGGACTTTAAAAAG
196 AGGATGCCACTGAGTCGTGGATTTAAAAAGAAAAAGG-TGCCAC-GAGTTGTGGACTTTAAAAAG
* *
21496 AAAAAGGTGCCACGAAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
259 AAAAAGGTGCCACG-AGTTGTGGACTTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGACTTT--
* *
21560 AAAGAAAAAGGTGCCACGGAGTTGTGGAC-TT-GAAAGGAAAAGGTGCCACGGAGTTGTGGGCTT
320 AAAG-AAAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTT
* *
21623 TAAAAAGAAAAAGGCGCCACGGTGTTGTGGACTTGAAAGGAAAAGGTGCCAG
384 TAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCAG
21675 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGACTTTAGAAAAAAAAGGTG
1 GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGACTTTAGAAAAAAAAGGTG
*
21740 TCACGGAGTTGTGGACTTAAAAGTAAAAAGAGTGCCACGAAGTTGTGAGCTTTAAAAAGAAAAAG
66 TCACGGAGTTGTGGACTTAAAAGTAAAAAGAGTGCCACGGAGTTGTGAGCTTTAAAAAGAAAAAG
*
21805 GTGTCACGGAGTTGTAGACTTGAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
131 GTGTCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
*
21870 AGGATGCCACTGAGTCGTGGACTTTAAAAAGAAAAAGGTGCCACGAAGTTGTGGAC-TTAAAAGG
196 AGGATGCCACTGAGTCGTGGA-TTTAAAAAGAAAAAGGTGCCACG-AGTTGTGGACTTTAAAAAG
* *
21934 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAA
259 AAAAAG-GTGCCAC-GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTAA
* * * * *
21999 AGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGCGCCACGGTGTTGTGGAC-TTG
322 A-GAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTA
*
22063 AAAAG-AAAAGGTGCCACAGAGTTGTGG
386 AAAAGAAAAAGGTGCCACGGAGTTGTGG
22090 GCTTTAAATA
Statistics
Matches: 766, Mismatches: 58, Indels: 53
0.87 0.07 0.06
Matches are distributed among these distances:
433 26 0.03
434 21 0.03
435 104 0.14
436 51 0.07
437 405 0.53
438 35 0.05
439 98 0.13
440 26 0.03
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (435 bp):
GGAGTTGTGGGCTTTAAAAAGAAAAAAGGATGCCACTGAGTCGTGGACTTTAGAAAAAAAAGGTG
TCACGGAGTTGTGGACTTAAAAGTAAAAAGAGTGCCACGGAGTTGTGAGCTTTAAAAAGAAAAAG
GTGTCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
AGGATGCCACTGAGTCGTGGATTTAAAAAGAAAAAGGTGCCACGAGTTGTGGACTTTAAAAAGAA
AAAGGTGCCACGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAGAA
AAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAG
AAAAAGGTGCCACGGAGTTGTGGACTTGAAAGGAAAAGGTGCCAG
Found at i:22176 original size:30 final size:30
Alignment explanation
Indices: 22103--22325 Score: 290
Period size: 30 Copynumber: 7.3 Consensus size: 30
22093 TTAAATAGAA
*
22103 AAAAG-GATGCCACTGAGTCGTAGACTTTGAAG
1 AAAAGAGATGCCACTGAGTCGTGGAC-TT--AG
*
22135 AAAAG-GATGCCACTGAGTCGTGGACTTCG
1 AAAAGAGATGCCACTGAGTCGTGGACTTAG
*
22164 AAAAGAGATGCCACTGGGTCGTGGACTTAG
1 AAAAGAGATGCCACTGAGTCGTGGACTTAG
22194 AAAAGAGATGCCACTGAGTCGTGGACTTAG
1 AAAAGAGATGCCACTGAGTCGTGGACTTAG
*
22224 AAAAGAGATGCCACTGAGTCGTGGACTTTG
1 AAAAGAGATGCCACTGAGTCGTGGACTTAG
*
22254 AAGAAAAGATGCCACTGAGTCGTGGACTTGGAAG
1 AA-AAGAGATGCCACTGAGTCGTGGACTT---AG
* *
22288 AAAAG-GATACCACTGAGTCGTGGACTTAC
1 AAAAGAGATGCCACTGAGTCGTGGACTTAG
*
22317 AAGAGAGAT
1 AAAAGAGAT
22326 TTGAAAAATT
Statistics
Matches: 173, Mismatches: 12, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
29 11 0.06
30 85 0.49
31 27 0.16
32 45 0.26
33 2 0.01
34 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (30 bp):
AAAAGAGATGCCACTGAGTCGTGGACTTAG
Found at i:24363 original size:315 final size:314
Alignment explanation
Indices: 23779--24546 Score: 1161
Period size: 315 Copynumber: 2.4 Consensus size: 314
23769 CGGGGCTAGA
* * *
23779 TATCCCTGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTAGAGTATCCCTTCGA-AA
1 TATCCCTGATTATGAAAAATTGAAGTTTTAGAAATAAAACC-GGGTTGGAGTATCCC--CGAGAA
* * *
23843 ATAACGGGGTTGGAGTATCCTCGATTATG-AAAATTTAATGTTTTAGAAAT-AAACCGGGGTTGG
63 ATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAA-GTTTTAGAAATAAAACCAGGGTTGG
* *
23906 AGTATCCCCGCGGAAACAATGGGGTTGGAGTATCCCCTATTATGAAAAATTGAAGTTTTAGAAAT
127 AGTATCCCCGCGGAAACAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAAT
** *
23971 AAAACCGGGGTTGGAGTATCCCCGTGGGAATAACGGGGTTAGAGTATCTCTGATTATGAAAAATT
192 AAAACCGGGGTTGGAGTATCCCCGTGAAAATAACGGGGTTAGAGTATCCCTGATTATGAAAAATT
* * *
24036 GATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCT-CAGAAATAACGGGGTTGGAG
257 AATGTTTTAGAAATAAAACCAGGGTTGGAGTAT-CCCTGCAGAAACAACGAGGTTGGAG
*
24094 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGCTTGGAGTATCCCCGTAGAAA
1 TATCCCTGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGG-TTGGAGTATCCCCG-AGAAA
*
24159 TAATGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCAGGGTTGGAG
64 TAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCAGGGTTGGAG
* *
24224 TATCCCCTCGGAAATAACGGGGTTGGAGTAT-CCCGATTATGAAAAATTGAAGTTTTAGAAATAA
129 TATCCCCGCGGAAACAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAA
* *
24288 AACCGGGGTTGGAGTAT-CCCTTCGAAAATAACGGGGTTGGAGTATCCCTGATTATGAAAAATTA
194 AACCGGGGTTGGAGTATCCCCGT-GAAAATAACGGGGTTAGAGTATCCCTGATTATGAAAAATTA
* ** *
24352 ATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCTGTGGAAACAATGAGGTTGGAG
258 ATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCTGCAGAAACAACGAGGTTGGAG
* *
24409 TATCCCTGATTACGAAAAATTGAAGTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCGCAGAAA
1 TATCCCTGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGG-GTTGGAGTATCCCCG-AGAAA
*
24474 TAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGGGTTGGAG
64 TAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCAGGGTTGGAG
24539 TATCCCCG
129 TATCCCCG
24547 ATTATGAAAA
Statistics
Matches: 414, Mismatches: 31, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
313 2 0.00
314 12 0.03
315 349 0.84
316 51 0.12
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (314 bp):
TATCCCTGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGTTGGAGTATCCCCGAGAAATA
ACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCAGGGTTGGAGTA
TCCCCGCGGAAACAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAA
CCGGGGTTGGAGTATCCCCGTGAAAATAACGGGGTTAGAGTATCCCTGATTATGAAAAATTAATG
TTTTAGAAATAAAACCAGGGTTGGAGTATCCCTGCAGAAACAACGAGGTTGGAG
Found at i:24542 original size:51 final size:51
Alignment explanation
Indices: 24479--24594 Score: 214
Period size: 51 Copynumber: 2.3 Consensus size: 51
24469 AGAAATAACG
*
24479 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCA
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCA
*
24530 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCG
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCA
24581 GGGTTGGAGTATCC
1 GGGTTGGAGTATCC
24595 TCGCGGAAAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCA
Found at i:24546 original size:79 final size:79
Alignment explanation
Indices: 23779--24546 Score: 1084
Period size: 79 Copynumber: 9.7 Consensus size: 79
23769 CGGGGCTAGA
* * * *
23779 TATCCCTGATTGTGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTAGAGTATCCCTTCG-A-A
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC--CGCAGA
23842 AATAACGGGGTTGGAG
64 AATAACGGGGTTGGAG
* * *
23858 TATCCTCGATTATG-AAAATTTAATGTTTTAGAAAT-AAACCGGGGTTGGAGTATCCCCGCGGAA
1 TATCCCCGATTATGAAAAATTGAA-GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAA
* *
23921 ACAATGGGGTTGGAG
65 ATAACGGGGTTGGAG
* ** *
23936 TATCCCCTATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGTGGGAA
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAAA
*
24001 TAACGGGGTTAGAG
66 TAACGGGGTTGGAG
* * * * *
24015 TATCTCTGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCAGAAA
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAAA
24080 TAACGGGGTTGGAG
66 TAACGGGGTTGGAG
* *
24094 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGCTTGGAGTATCCCCGTAGAAA
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAAA
*
24159 TAATGGGGTTGGAG
66 TAACGGGGTTGGAG
* * *
24173 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGGAAA
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAAA
24238 TAACGGGGTTGGAG
66 TAACGGGGTTGGAG
24252 TAT-CCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCTTCG-A-A
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC--CGCAGA
24314 AATAACGGGGTTGGAG
64 AATAACGGGGTTGGAG
* * **
24330 TATCCCTGATTATGAAAAATT-AATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCTGTGGAA
1 TATCCCCGATTATGAAAAATTGAA-GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAA
* * *
24394 ACAATGAGGTTGGAG
65 ATAACGGGGTTGGAG
* * * *
24409 TATCCCTGATTACGAAAAATTGAAGTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCGCAGAAA
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAAA
24474 TAACGGGGTTGGAG
66 TAACGGGGTTGGAG
* *
24488 TATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCG
1 TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCG
24547 ATTATGAAAA
Statistics
Matches: 612, Mismatches: 65, Indels: 24
0.87 0.09 0.03
Matches are distributed among these distances:
76 2 0.00
77 1 0.00
78 139 0.23
79 467 0.76
80 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (79 bp):
TATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCGCAGAAA
TAACGGGGTTGGAG
Found at i:24557 original size:130 final size:130
Alignment explanation
Indices: 24399--24673 Score: 444
Period size: 130 Copynumber: 2.1 Consensus size: 130
24389 TGGAAACAAT
* *
24399 GAGGTTGGAGTATCCCTGATTACGAAAAATTGAAGTTTTAGAAATAAAATCGGAGTTGGAGTATC
1 GAGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACCGGAGTTGGAGTATC
* * * *
24464 CCCGCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACC
66 CCCGCAGAAACAACAGGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACC
* *
24529 -AGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 GA-GGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACCGGAGTTGGAGTAT
* *
24593 CCTCGCGGAAACAACAGGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAAC
65 CCCCGCAGAAACAACAGGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAAC
24658 C
130 C
24659 GAGGTTGGAGTATCC
1 GAGGTTGGAGTATCC
24674 TCGCAGAAAT
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
129 1 0.01
130 131 0.98
131 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (130 bp):
GAGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACCGGAGTTGGAGTATC
CCCGCAGAAACAACAGGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACC
Found at i:24559 original size:209 final size:209
Alignment explanation
Indices: 24321--24744 Score: 721
Period size: 209 Copynumber: 2.0 Consensus size: 209
24311 GAAAATAACG
*
24321 GGGTTGGAGTATCCCTGATTATGAAAAATT-AATGTTTTAGAAATAAAACCGGGGTTGGAGTATC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAA-GTTTTAGAAATAAAACCGGGGTTGGAGTATC
* * *
24385 C-CTGTGGAAACAA-TGAGGTTGGAGTATCCCTGATTACGAAAAATTGAAGTTTTAGAAATAAAA
65 CTC-GCGGAAACAACAG-GGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAA
*
24448 TCG-GAGTTGGAGTATCCCCGCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAT
128 CCGAG-GTTGGAGTATCCCCGCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAT
24512 GTTTTAGAAATAAAACCA
192 GTTTTAGAAATAAAACCA
24530 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
24595 TCGCGGAAACAACAGGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACCG
66 TCGCGGAAACAACAGGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACCG
*
24660 AGGTTGGAGTATCCTCGCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTT
131 AGGTTGGAGTATCCCCGCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTT
*
24725 TAGAAATAAAACCG
196 TAGAAATAAAACCA
24739 GGGTTG
1 GGGTTG
24745 AAGTTTCCTT
Statistics
Matches: 204, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
209 199 0.98
210 5 0.02
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (209 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
TCGCGGAAACAACAGGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACCG
AGGTTGGAGTATCCCCGCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTT
TAGAAATAAAACCA
Found at i:24614 original size:79 final size:79
Alignment explanation
Indices: 24530--25020 Score: 727
Period size: 79 Copynumber: 6.2 Consensus size: 79
24520 AATAAAACCA
24530 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
* * *
24595 TCGCGGAAACAACA
66 TCTCGGAAATAACG
* *
24609 GGGTTGGAGTATCCCCGATTACGAAAAATTGAAGTTTTAGAAATAAAACCGAGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
* *
24674 TCGCAGAAATAACG
66 TCTCGGAAATAACG
* * *
24688 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGAAGTTTCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
* **
24753 TTTTAGAAATAACG
66 TCTCGGAAATAACG
* *
24767 GGGTTGGAGTATCCTCGATTATGAAAAATTAAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
* *
24832 CCTCGAAAATAACG
66 TCTCGGAAATAACG
* *
24846 GGGTTGGAGTAT-CCCGATTATGAAAAATTGAAGTTTTAGAAATTAAATCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
* * *
24910 CCCCGGAAACAACG
66 TCTCGGAAATAACG
* * *
24924 GGGTTGGAGTATCCCCGATTATGAGAAATT-AATATTTTAGAAATAAAACCGGGTTTGGAGTATC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGAA-GTTTTAGAAATAAAACCGGGGTTGGAGTATC
24988 C-CTCGGAAATAACG
65 CTCTCGGAAATAACG
25002 GGGTTGGAGTATCCCCGAT
1 GGGTTGGAGTATCCCCGAT
25021 GATTAACGGG
Statistics
Matches: 373, Mismatches: 37, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
78 103 0.28
79 270 0.72
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
TCTCGGAAATAACG
Found at i:24781 original size:28 final size:30
Alignment explanation
Indices: 24722--24781 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 30
24712 AAAATTGATG
*
24722 TTTTAGAAATAAAACCGGGGTTGAAGTTTCC
1 TTTTAGAAAT-AAACCGGGGTTGAAGTATCC
*
24753 TTTTAGAAAT-AA-CGGGGTTGGAGTATCC
1 TTTTAGAAATAAACCGGGGTTGAAGTATCC
24781 T
1 T
24782 CGATTATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 15 0.56
29 2 0.07
31 10 0.37
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (30 bp):
TTTTAGAAATAAACCGGGGTTGAAGTATCC
Found at i:25008 original size:27 final size:26
Alignment explanation
Indices: 24973--25046 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 26
24963 GAAATAAAAC
*
24973 CGGGTTTGGAGTATCCCTCG-GAAATAA
1 CGGGGTTGGAGTATCCC-CGAG-AATAA
*
25000 CGGGGTTGGAGTATCCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCGA-GAATAA
25027 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
25047 TTGTGAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (26 bp):
CGGGGTTGGAGTATCCCCGAGAATAA
Found at i:26493 original size:21 final size:21
Alignment explanation
Indices: 26467--26518 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
26457 TATGCCCATC
*
26467 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTCCATTTTTAT
26488 ATTCCATGCCTCCATTTTTAT
1 ATTCCATGCCTCCATTTTTAT
26509 ATTCCATGCC
1 ATTCCATGCC
26519 CATCATTCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.46
Consensus pattern (21 bp):
ATTCCATGCCTCCATTTTTAT
Found at i:26527 original size:35 final size:35
Alignment explanation
Indices: 26488--26683 Score: 356
Period size: 35 Copynumber: 5.6 Consensus size: 35
26478 TCATTTTTAT
*
26488 ATTCCATGCCTCCATTTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
*
26523 ATTCCATGCTTTCATTTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
26558 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
*
26593 ATTCCATGCCTTCAATTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
*
26628 ATTCCATGCCTTCATTTTTATATTCCATGCCTATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
26663 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTTCATTTTTAT
26684 TATTTTTTTT
Statistics
Matches: 155, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 155 1.00
ACGTcount: A:0.20, C:0.30, G:0.06, T:0.44
Consensus pattern (35 bp):
ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
Found at i:26619 original size:21 final size:21
Alignment explanation
Indices: 26593--26659 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
26583 CATGCCCATC
26593 ATTCCATGCCTTCAATTTTAT
1 ATTCCATGCCTTCAATTTTAT
*
26614 ATTCCATGCC--C-A---T-C
1 ATTCCATGCCTTCAATTTTAT
*
26628 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTTCAATTTTAT
26649 ATTCCATGCCT
1 ATTCCATGCCT
26660 ATCATTCCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
14 10 0.28
15 1 0.03
16 1 0.03
18 1 0.03
19 1 0.03
20 1 0.03
21 21 0.58
ACGTcount: A:0.21, C:0.30, G:0.06, T:0.43
Consensus pattern (21 bp):
ATTCCATGCCTTCAATTTTAT
Found at i:26668 original size:14 final size:13
Alignment explanation
Indices: 26649--26678 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
26639 TCATTTTTAT
26649 ATTCCATGCCTATC
1 ATTCCATGCCT-TC
26663 ATTCCATGCCTTC
1 ATTCCATGCCTTC
26676 ATT
1 ATT
26679 TTTATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.20, C:0.33, G:0.07, T:0.40
Consensus pattern (13 bp):
ATTCCATGCCTTC
Found at i:27195 original size:40 final size:41
Alignment explanation
Indices: 27149--27252 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 41
27139 TCCTACTTTT
*
27149 TTGAGGACAAAGAAAAAGAG-AATGAAATAG-GTCCTGC-TCC
1 TTGAGGACAAAGAAAAAGAGAAAAGAAA-AGTGTCCTGCGT-C
* *
27189 TTGAGGACAAAGGAAAAGAAGAAAAGGAAAGTGTCCTGCGTC
1 TTGAGGACAAAGAAAAAG-AGAAAAGAAAAGTGTCCTGCGTC
27231 TTGAGGACAAAGTGAAAAAGAG
1 TTGAGGACAAA--GAAAAAGAG
27253 TACGTCTCGT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
40 17 0.31
41 4 0.07
42 24 0.44
43 3 0.06
44 6 0.11
ACGTcount: A:0.44, C:0.12, G:0.29, T:0.15
Consensus pattern (41 bp):
TTGAGGACAAAGAAAAAGAGAAAAGAAAAGTGTCCTGCGTC
Found at i:27357 original size:41 final size:41
Alignment explanation
Indices: 27148--27369 Score: 119
Period size: 41 Copynumber: 5.5 Consensus size: 41
27138 GTCCTACTTT
* *
27148 TTTGAGGACAAAGAAAAA-GAGAATGAAA-TAGGTCCTGCTC
1 TTTGAGGACAAAGAAAAAGGAAAAT-AAAGTACGTCCTGCTC
* * *
27188 CTTGAGGACAAAGGAAAAGAAGAAAAGGAAAGT--GTCCTGCGTC
1 TTTGAGGACAAA-GAAAA-AGGAAAA-TAAAGTACGTCCTGC-TC
* * *
27231 -TTGAGGACAAAG-----TGAAAA-AGAGTACGT-CT-CGTT
1 TTTGAGGACAAAGAAAAAGGAAAATAAAGTACGTCCTGC-TC
* * * * *
27264 TTTCGAGGACAAAGGAAAAAAGGGAAACAAAATACTTCCTACTC
1 TTT-GAGGACAAA-G-AAAAAGGAAAATAAAGTACGTCCTGCTC
* *
27308 TCTAAGGACAAAGAAAAAGGAAAATAAAGTACGTCCTGCTC
1 TTTGAGGACAAAGAAAAAGGAAAATAAAGTACGTCCTGCTC
27349 TTTGAGGACAAAAGAGAAAAG
1 TTTGAGGAC-AAAGA-AAAAG
27370 AAGGGAAAGA
Statistics
Matches: 139, Mismatches: 21, Indels: 41
0.69 0.10 0.20
Matches are distributed among these distances:
33 7 0.05
34 4 0.03
35 16 0.12
36 1 0.01
40 11 0.08
41 36 0.26
42 29 0.21
43 28 0.20
44 6 0.04
45 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.18
Consensus pattern (41 bp):
TTTGAGGACAAAGAAAAAGGAAAATAAAGTACGTCCTGCTC
Found at i:27590 original size:26 final size:26
Alignment explanation
Indices: 27561--27649 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
27551 CTTTAAAAGG
27561 AAAAGGTGTCCTGCTCTTTGAGGACT
1 AAAAGGTGTCCTGCTCTTTGAGGACT
** * * *
27587 AAAAGGTG-CCACCAACTTGTGTGGGCTTT
1 AAAAGGTGTCCTGC-TCTT-TGAGGAC--T
*
27616 AAAAGGCGTCCTGCTCTTTGAGGACT
1 AAAAGGTGTCCTGCTCTTTGAGGACT
*
27642 GAAAGGTG
1 AAAAGGTG
27650 CCACCAACTT
Statistics
Matches: 45, Mismatches: 13, Indels: 10
0.66 0.19 0.15
Matches are distributed among these distances:
25 3 0.07
26 18 0.40
27 5 0.11
28 5 0.11
29 11 0.24
30 3 0.07
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
AAAAGGTGTCCTGCTCTTTGAGGACT
Found at i:27621 original size:29 final size:29
Alignment explanation
Indices: 27586--27674 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 29
27576 CTTTGAGGAC
27586 TAAAAGGTGCCACCAACTTGTGTGGGCTT
1 TAAAAGGTGCCACCAACTTGTGTGGGCTT
* ** * * *
27615 TAAAAGGCGTCCTGC-TCTT-TGAGGAC--
1 TAAAAGGTG-CCACCAACTTGTGTGGGCTT
*
27641 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TAAAAGGTGCCACCAACTTGTGTGGGCTT
27670 TAAAA
1 TAAAA
27675 AGAAAAGGCA
Statistics
Matches: 41, Mismatches: 14, Indels: 10
0.63 0.22 0.15
Matches are distributed among these distances:
25 3 0.07
26 10 0.24
27 5 0.12
28 5 0.12
29 15 0.37
30 3 0.07
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (29 bp):
TAAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:27729 original size:60 final size:61
Alignment explanation
Indices: 27385--27952 Score: 737
Period size: 61 Copynumber: 9.4 Consensus size: 61
27375 AAAGAAGTGT
* * * *
27385 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGTCTTTGAAAAGAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
* * * *
27446 GTCCTGCTCTTTGAGGACTGGAAGATGCCACCAACTAGTGTGGGATTTGCAAAAAG-AAA-GC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAAGAAAAGGC
* * * * *
27507 ATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGT
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
*
27568 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT------AAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
27623 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
* * * * * *
27684 ATCCTGCTTTTTGAGGGCT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGT
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
* *
27744 GTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGT
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAGGC
* * *
27805 GTCCTGCTCTTTGAGGACTG-GAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAGT
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG--AAAAGGC
* * *
27867 GTCATGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAGAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA-AAAGGC
*
27928 GTCCTGCTCTTTGAGGACTGGAAGG
1 GTCCTGCTCTTTGAGGACTGAAAGG
27953 GCTAAAAGAG
Statistics
Matches: 446, Mismatches: 45, Indels: 31
0.85 0.09 0.06
Matches are distributed among these distances:
55 53 0.12
59 5 0.01
60 90 0.20
61 231 0.52
62 62 0.14
63 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
Found at i:35550 original size:52 final size:52
Alignment explanation
Indices: 35402--35530 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
35392 CGAAATATGA
35402 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
35454 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
35506 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
35531 AAGATCAGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:35557 original size:13 final size:13
Alignment explanation
Indices: 35539--35563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35529 CAAAGATCAG
35539 TGTATCGATACAA
1 TGTATCGATACAA
35552 TGTATCGATACA
1 TGTATCGATACA
35564 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:35630 original size:19 final size:19
Alignment explanation
Indices: 35606--35690 Score: 101
Period size: 19 Copynumber: 4.7 Consensus size: 19
35596 TAGCTTAAAT
35606 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
35625 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
35644 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
35657 TGTATCGATACAACACTTTA
1 TGTATCGATACAAAAC-TTA
35677 TGTATCGATACAAA
1 TGTATCGATACAAA
35691 TCGTTGAAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
13 11 0.19
14 1 0.02
16 2 0.04
19 30 0.53
20 13 0.23
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:35662 original size:13 final size:13
Alignment explanation
Indices: 35644--35668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35634 ACAACACTTA
35644 TGTATCGATACAT
1 TGTATCGATACAT
35657 TGTATCGATACA
1 TGTATCGATACA
35669 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35666 original size:32 final size:33
Alignment explanation
Indices: 35625--35688 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
35615 ACAAAACTTA
35625 TGTATCGATACAACAC-TTATGTATCGATACAT
1 TGTATCGATACAACACTTTATGTATCGATACAT
35657 TGTATCGATACAACACTTTATGTATCGATACA
1 TGTATCGATACAACACTTTATGTATCGATACA
35689 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAACACTTTATGTATCGATACAT
Found at i:36397 original size:55 final size:52
Alignment explanation
Indices: 36311--36492 Score: 168
Period size: 55 Copynumber: 3.4 Consensus size: 52
36301 GATAAAAGGA
* * * *
36311 CCAATATGTTGATTCATGGCCAACGATATTAGGTTTAAAGATGAGAAAAAGGATG
1 CCAATGTGCTGATTCAAGGCCAACGACATTAGGTTTAAAGATGAG-AAAA--ATG
* * * * ** *
36366 TCAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAAAATG
1 CCAATGTGCTGATTCAAGGCCAACGACATTAGGTTTAAAGATGAGAAAAATG
* * **
36418 CCAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTAAAGATGATG-AAGGTG
1 CCAATGTGCTGATTCAAGGCCAACGACATTAGG-TTTAAAGATGA-GAAAAATG
*
36471 CCAATATGCTGATTCAAGGCCA
1 CCAATGTGCTGATTCAAGGCCA
36493 GCAATATTGG
Statistics
Matches: 103, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
52 29 0.28
53 34 0.33
54 5 0.05
55 35 0.34
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (52 bp):
CCAATGTGCTGATTCAAGGCCAACGACATTAGGTTTAAAGATGAGAAAAATG
Found at i:36447 original size:52 final size:52
Alignment explanation
Indices: 36311--36514 Score: 158
Period size: 53 Copynumber: 3.8 Consensus size: 52
36301 GATAAAAGGA
* * * * **
36311 CCAATATGTTGATTCATGGCCAACGATATTAGGTTTAAAGATGAGAAAAAGGATG
1 CCAATATGCTGATTCAAGGCCAACAACATTAGACTTAAAGATGAG-AAAA--ATG
* * * * * * *
36366 TCAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAAAATG
1 CCAATATGCTGATTCAAGGCCAACAACATTAGACTTAAAGATGAGAAAAATG
* * ** **
36418 CCAATGTGCTGATTCAAGGCCAACAACATTGGGTTTTAAAGATGATG-AAGGTG
1 CCAATATGCTGATTCAAGGCCAACAACATT-AGACTTAAAGATGA-GAAAAATG
* * *
36471 CCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGA
1 CCAATATGCTGATTCAAGGCCAACAACATTAGACTTAAAGATGA
36515 AGGTGAGAAA
Statistics
Matches: 121, Mismatches: 26, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
52 40 0.33
53 41 0.34
54 5 0.04
55 35 0.29
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (52 bp):
CCAATATGCTGATTCAAGGCCAACAACATTAGACTTAAAGATGAGAAAAATG
Found at i:36577 original size:67 final size:68
Alignment explanation
Indices: 36455--36581 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
36445 ATTGGGTTTT
* * *
36455 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGGTG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGGTG
36520 AGA
66 AGA
* * ** *
36523 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAATGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
36582 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGGTG
AGA
Found at i:36768 original size:92 final size:92
Alignment explanation
Indices: 36589--36865 Score: 428
Period size: 92 Copynumber: 3.0 Consensus size: 92
36579 TGAGAAAAAG
* * * * *
36589 GATGTCAATGTGCTAATTCAAGACCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGC
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGCCAATATGC
36654 TGATTCAAGGCCAGCTATATTGGACTTAAA
63 TGATTCAAGGCCAGCTATATTGGACTTAAA
36684 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA
*
36749 TTCAAGGCTAGCTATATTGGACTTAAA
66 TTCAAGGCCAGCTATATTGGACTTAAA
* * *
36776 GGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGA
1 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA
* *
36841 TTCAAGGCCAGCGATATTGGGCTTA
66 TTCAAGGCCAGCTATATTGGACTTA
36866 GAAGGGTTGC
Statistics
Matches: 170, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
92 129 0.76
95 41 0.24
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (92 bp):
GATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGA
TTCAAGGCCAGCTATATTGGACTTAAA
Found at i:36777 original size:22 final size:21
Alignment explanation
Indices: 36752--36819 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 21
36742 ATGCTGATTC
36752 AAGGCTAGCTATATTGGACTTA
1 AAGGCTAGCTA-ATTGGACTTA
* *
36774 AAGG-T-GCCAATGTGCTGA-TTC
1 AAGGCTAGCTAAT-TG--GACTTA
36795 AAGGCTAGCTACATTGGACTTA
1 AAGGCTAGCTA-ATTGGACTTA
36817 AAG
1 AAG
36820 ATGAAGGTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 9 0.26
22 12 0.34
23 5 0.14
24 2 0.06
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (21 bp):
AAGGCTAGCTAATTGGACTTA
Found at i:36798 original size:21 final size:20
Alignment explanation
Indices: 36731--36798 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
36721 CTTAAAGAAG
36731 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
* *
36752 AAGGCTAGCTATATTG--GACTTA
1 AAGG-T-GCCA-ATTGCTGA-TTC
36774 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
36795 AAGG
1 AAGG
36799 CTAGCTACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (20 bp):
AAGGTGCCAATTGCTGATTC
Found at i:36860 original size:49 final size:49
Alignment explanation
Indices: 36536--36865 Score: 308
Period size: 43 Copynumber: 6.8 Consensus size: 49
36526 GTGATAAAGA
* * * *
36536 TGCCAATATGTTGATTCACGGCCA-ATGATATTGGGCTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCT-ATATTGGACTTAAAGAT--G---AAGG
* * * * * *
36590 ATGTCAATGTGCTAATTCAAGACCAGCTACATTGAACTTAAAGATGGAAAAGG
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGG
36643 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G-A--
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
36686 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
36735 TGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
36778 TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
36827 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
36866 GAAGGGTTGC
Statistics
Matches: 233, Mismatches: 29, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
43 76 0.33
44 2 0.01
45 3 0.01
46 1 0.00
47 2 0.01
48 1 0.00
49 73 0.31
50 1 0.00
51 2 0.01
52 32 0.14
53 6 0.03
54 1 0.00
55 32 0.14
56 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
Found at i:36892 original size:30 final size:30
Alignment explanation
Indices: 36858--36917 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
36848 CCAGCGATAT
36858 TGGGC-TTAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAA-GGTTGCCACCGACTTGTG
*
36888 TGGGCTTTAGAAGGTTGCCACTGACTTGTG
1 TGGGCTTTAGAAGGTTGCCACCGACTTGTG
36918 GGCTTTTGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.17, C:0.18, G:0.35, T:0.30
Consensus pattern (30 bp):
TGGGCTTTAGAAGGTTGCCACCGACTTGTG
Found at i:37049 original size:59 final size:59
Alignment explanation
Indices: 36886--37135 Score: 371
Period size: 59 Copynumber: 4.3 Consensus size: 59
36876 CACCGACTTG
* * * * *
36886 TGTGGGCTTT--AGAAGGTTGCCACTGACTTGTGGGCTTTTGGAGAGATACCATTGACT
1 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACT
* * * *
36943 TGTGCGCTTTGGAAAAAGGGTGCTACTGACTTGTGGGC-TTTGAAAAAGATGCCGCTGACT
1 TGTGGGCTTTGG-AAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAAGATACCACTGACT
37003 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACT
1 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACT
*
37062 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACT
37121 TGTGGGCTTTGGAAA
1 TGTGGGCTTTGGAAA
37136 TGTGAGGAAT
Statistics
Matches: 174, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
57 9 0.05
59 116 0.67
60 49 0.28
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (59 bp):
TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTGACT
Found at i:37135 original size:29 final size:29
Alignment explanation
Indices: 36886--37135 Score: 297
Period size: 29 Copynumber: 8.5 Consensus size: 29
36876 CACCGACTTG
* * *
36886 TGTGGGCTTTAG-AAGGTTGCCACTGACT
1 TGTGGGCTTTGGAAAAGATGCCACTGACT
* * *
36914 TGTGGGCTTTTGG-AGAGATACCATTGACT
1 TGTGGGC-TTTGGAAAAGATGCCACTGACT
* * *
36943 TGTGCGCTTTGGAAAAAGGGTGCTACTGACT
1 TGTGGGCTTTGG-AAAA-GATGCCACTGACT
* *
36974 TGTGGGCTTTGAAAAAGATGCCGCTGACT
1 TGTGGGCTTTGGAAAAGATGCCACTGACT
*
37003 TGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGGAAAA-GATGCCACTGACT
* *
37033 TGTGGGCTTTTGAAAAGATACCACTGACT
1 TGTGGGCTTTGGAAAAGATGCCACTGACT
*
37062 TGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGGAAAA-GATGCCACTGACT
*
37092 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGGAAAAGATGCCACTGACT
37121 TGTGGGCTTTGGAAA
1 TGTGGGCTTTGGAAA
37136 TGTGAGGAAT
Statistics
Matches: 187, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
28 12 0.06
29 98 0.52
30 58 0.31
31 19 0.10
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (29 bp):
TGTGGGCTTTGGAAAAGATGCCACTGACT
Found at i:38581 original size:17 final size:18
Alignment explanation
Indices: 38559--38594 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
38549 TCCGGACCCT
38559 TTTTGTTGT-TTTTTTTG
1 TTTTGTTGTATTTTTTTG
*
38576 TTTTGTTTTATTTTTTTG
1 TTTTGTTGTATTTTTTTG
38594 T
1 T
38595 GGAGGACGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83
Consensus pattern (18 bp):
TTTTGTTGTATTTTTTTG
Found at i:53855 original size:79 final size:79
Alignment explanation
Indices: 53625--54280 Score: 976
Period size: 79 Copynumber: 8.3 Consensus size: 79
53615 TAGAGATAAC
* * * * *
53625 AACGGGGCTAGAGTATCCCTGATTGTGAAAAATTGATGTTTTTAGAAATAAAACCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAG-TTTTAGAAATAAAACCGGGGTTGGAG
**
53690 TATCCCTTCGGAAAT
65 TATCCCCGCGGAAAT
53705 AACGGGGTTGGAGTATCCCCGATTATGGAAAAATT-AATGTTTTAGAAATAAAACCGGGGTTGGA
1 AACGGGGTTGGAGTATCCCCGATTAT-GAAAAATTGAA-GTTTTAGAAATAAAACCGGGGTTGGA
*
53769 GTATCCCCGCGGAAAC
64 GTATCCCCGCGGAAAT
* *
53785 AACGGGGTTGGAGTATCCCCGATTACGAAAAATTAAAGTTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGT
*
53850 ATCCCCGCGGGAAT
66 ATCCCCGCGGAAAT
* * *
53864 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAGTAAAACCAGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGT
* *
53929 ATCCCCTCAGAAAT
66 ATCCCCGCGGAAAT
* *
53943 AACGGGGTTGGAGTATCCCCGATTATGAAAATTTGAAGTTTTAGAAATAAAACTGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGT
* *
54008 ATCCCCGCGAAAAC
66 ATCCCCGCGGAAAT
* **
54022 AACGGGGTTGGAGTATCCTCGATTACAAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGT
*
54087 ATCCCCTCGGAAAT
66 ATCCCCGCGGAAAT
* *
54101 AACGGGGTTGGAGTAT-CCCGATTATGAAAAATTGAATTTTTAGAAATAAAACTGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGT
*
54165 ATCCCCGCGGAAAC
66 ATCCCCGCGGAAAT
* * *
54179 AACGGGGTTGGAGTATCCTCGATTATGAGAAATT-AATATTTTAGAAATAAAACCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAA-GTTTTAGAAATAAAACCGGGGTTGGAG
*
54243 TATCCCCTCGGAAAT
65 TATCCCCGCGGAAAT
54258 AACGGGGTTGGAGTATCCCCGAT
1 AACGGGGTTGGAGTATCCCCGAT
54281 GATTAACGGG
Statistics
Matches: 521, Mismatches: 50, Indels: 11
0.90 0.09 0.02
Matches are distributed among these distances:
78 73 0.14
79 351 0.67
80 88 0.17
81 9 0.02
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAAGTTTTAGAAATAAAACCGGGGTTGGAGT
ATCCCCGCGGAAAT
Found at i:54295 original size:27 final size:28
Alignment explanation
Indices: 54232--54303 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
54222 GAAATAAAAC
**
54232 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
* *
54260 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
54287 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
54304 TGATTGTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.21, C:0.21, G:0.35, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:55753 original size:21 final size:21
Alignment explanation
Indices: 55727--55848 Score: 101
Period size: 21 Copynumber: 6.5 Consensus size: 21
55717 TATGCCCATC
*
55727 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTCCATTTTTAT
55748 ATTCCATGCCTCCATTTTTAT
1 ATTCCATGCCTCCATTTTTAT
*
55769 ATTCCATG-C-CCA----T-C
1 ATTCCATGCCTCCATTTTTAT
*
55783 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTCCATTTTTAT
*
55804 ATTCCATG-C-CCA----T-C
1 ATTCCATGCCTCCATTTTTAT
*
55818 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTCCATTTTTAT
55839 ATTCCATGCC
1 ATTCCATGCC
55849 CATCATTCCA
Statistics
Matches: 79, Mismatches: 8, Indels: 28
0.69 0.07 0.24
Matches are distributed among these distances:
14 16 0.20
15 4 0.05
16 4 0.05
19 5 0.06
20 4 0.05
21 46 0.58
ACGTcount: A:0.20, C:0.30, G:0.06, T:0.44
Consensus pattern (21 bp):
ATTCCATGCCTCCATTTTTAT
Found at i:55787 original size:35 final size:35
Alignment explanation
Indices: 55748--55943 Score: 365
Period size: 35 Copynumber: 5.6 Consensus size: 35
55738 TCATTTTTAT
*
55748 ATTCCATGCCTCCATTTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
55783 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
55818 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
*
55853 ATTCCATGCCTTCAATTTTATATTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
*
55888 ATTCCATGCCTTCATTTTTATGTTCCATGCCCATC
1 ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
55923 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTTCATTTTTAT
55944 TATTTTTTTT
Statistics
Matches: 157, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 157 1.00
ACGTcount: A:0.20, C:0.31, G:0.06, T:0.43
Consensus pattern (35 bp):
ATTCCATGCCTTCATTTTTATATTCCATGCCCATC
Found at i:59829 original size:52 final size:53
Alignment explanation
Indices: 59732--59885 Score: 165
Period size: 52 Copynumber: 2.9 Consensus size: 53
59722 CGATTGTGAA
* *
59732 AAAAATTGGTGTTTCTGGAAAA-AAAA-TCGGAGCTGGAGTATCCCCGATTAAAGG
1 AAAAATTGGTGTTT-T-GAAAATAAAACTGGGA-TTGGAGTATCCCCGATTAAAGG
**
59786 -AAAATTGGTGTTTTGAAAATAAAACTGGGATTGGAGTATCCCCGATT-GTGG
1 AAAAATTGGTGTTTTGAAAATAAAACTGGGATTGGAGTATCCCCGATTAAAGG
* * * *
59837 AAAAATTAGTGTTTT-AGCAATAAAACCGGGGTTGGAGTATCCCCGATTA
1 AAAAATTGGTGTTTTGA-AAATAAAACTGGGATTGGAGTATCCCCGATTA
59886 TGAAAAATCA
Statistics
Matches: 87, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
51 8 0.09
52 62 0.71
53 17 0.20
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (53 bp):
AAAAATTGGTGTTTTGAAAATAAAACTGGGATTGGAGTATCCCCGATTAAAGG
Found at i:59918 original size:51 final size:52
Alignment explanation
Indices: 59802--59929 Score: 159
Period size: 51 Copynumber: 2.5 Consensus size: 52
59792 GGTGTTTTGA
* * * * * *
59802 AAATAAAACTGGGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAG
1 AAATAAAACCGGGGTTGGAGTATCCCCGATTATGGAAAAATCAATATTTTAG
* *
59854 CAATAAAACCGGGGTTGGAGTATCCCCGATTAT-GAAAAATCAATATTTTGG
1 AAATAAAACCGGGGTTGGAGTATCCCCGATTATGGAAAAATCAATATTTTAG
**
59905 AAATAAAGTCGGGGTTGGAGTATCC
1 AAATAAAACCGGGGTTGGAGTATCC
59930 TCAGAAATAA
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
51 36 0.55
52 29 0.45
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (52 bp):
AAATAAAACCGGGGTTGGAGTATCCCCGATTATGGAAAAATCAATATTTTAG
Found at i:59975 original size:27 final size:28
Alignment explanation
Indices: 59914--59987 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
59904 GAAATAAAGT
*
59914 CGGGGTTGGAGTATCCTC-A-GAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
59940 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
59967 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
59988 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 17 0.39
27 26 0.59
28 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:62488 original size:13 final size:13
Alignment explanation
Indices: 62470--62494 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62460 ACAAAGATCC
62470 ATGTATCGATACG
1 ATGTATCGATACG
62483 ATGTATCGATAC
1 ATGTATCGATAC
62495 ACAGAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACG
Found at i:62488 original size:33 final size:33
Alignment explanation
Indices: 62450--62514 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
62440 AAATTTCCAA
***
62450 ATGTATCGATACAAAGATCCATGTATCGATACG
1 ATGTATCGATACAAAGAAAAATGTATCGATACG
*
62483 ATGTATCGATACACAGAAAAATGTATCGATAC
1 ATGTATCGATACAAAGAAAAATGTATCGATAC
62515 ATTTCCTTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACG
Found at i:63397 original size:55 final size:55
Alignment explanation
Indices: 63313--64100 Score: 805
Period size: 59 Copynumber: 13.9 Consensus size: 55
63303 ATAAAGCGTA
* * *
63313 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* *
63368 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGGAG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* * * * *
63423 TCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGAGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
*
63478 TCCTGCTCTTTGA-G---G--A-TGCCACCAACTTGTGTGGGCTTTG-AAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* * * * *
63525 TCCTGCTCTTTGAGGACTGGAAAATGCCACAAACTTGAGTGGGCTTCG-AAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* * * *
63580 TCCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGTGTGGGCTTCG-AAAGGGG
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
* *
63635 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAAG-----GCG
* * *
63696 TCTTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
* * * *
63755 TCCCGCTCTTTGAAGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
*
63814 TCCCGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
* * *
63873 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
* *
63932 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
*
63991 TCCCGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCG
* *
64050 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
64101 AAAAAGGCAT
Statistics
Matches: 668, Mismatches: 40, Indels: 51
0.88 0.05 0.07
Matches are distributed among these distances:
47 41 0.06
48 1 0.00
49 1 0.00
52 1 0.00
54 14 0.02
55 225 0.34
56 4 0.01
58 2 0.00
59 327 0.49
60 26 0.04
61 20 0.03
64 6 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCG
Found at i:63516 original size:47 final size:47
Alignment explanation
Indices: 63447--63540 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
63437 GACTAAAAGG
63447 TGCCACCAACTTGTGAGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGA
1 TGCCACCAACTTGTGAGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGA
*
63494 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
1 TGCCACCAACTTGTGAGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
63541 CTGGAAAATG
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 43 0.96
48 2 0.04
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (47 bp):
TGCCACCAACTTGTGAGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
Found at i:63624 original size:157 final size:157
Alignment explanation
Indices: 63337--63646 Score: 507
Period size: 157 Copynumber: 2.0 Consensus size: 157
63327 GACTAAAAAG
*
63337 TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAAC
1 TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACAAAC
* * *
63402 TTGTGTGGGCTTTGAAAGGAGTCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGAGGGC
66 TTGAGTGGGCTTCGAAAGGAGTCCTGCTCTTTGGGGACTAAAAGATGCCACCAACTTGTGAGGGC
* *
63467 TT-TAAGAGGTGTCCTGCTCTTTGAGGA
131 TTCGAA-AGGGGTCCTGCTCTTTGAGGA
*
63494 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACAAAC
1 TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACAAAC
* *
63559 TTGAGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGACTGAAAA-ATGCCACCAACTTGTGTGGG
66 TTGAGTGGGCTTCGAAAGGAGTCCTGCTCTTTGGGGACT-AAAAGATGCCACCAACTTGTGAGGG
63623 CTTCGAAAGGGGTCCTGCTCTTTG
130 CTTCGAAAGGGGTCCTGCTCTTTG
63647 GGGACTGAAA
Statistics
Matches: 142, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
157 136 0.96
158 6 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (157 bp):
TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACAAAC
TTGAGTGGGCTTCGAAAGGAGTCCTGCTCTTTGGGGACTAAAAGATGCCACCAACTTGTGAGGGC
TTCGAAAGGGGTCCTGCTCTTTGAGGA
Found at i:63773 original size:59 final size:59
Alignment explanation
Indices: 63494--64124 Score: 824
Period size: 59 Copynumber: 10.9 Consensus size: 59
63484 TCTTTGAGGA
** * **
63494 TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACT-GAAGG
* * * ** * * **
63549 TGCCACAAACTTGAGTGGGC-TT---CG-AAAGGGGTCCTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTG-AAGG
* ** * *
63604 TGCCACCAACTTGTGTGGGC-TT---CG-AAAGGGGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTG-AAGG
* **
63659 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCTTGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
*
63719 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAAGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
*
63778 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
*
63837 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
* *
63896 TGCCACCAGCTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
* *
63955 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
*
64014 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
* *
64073 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCATCCTGCTTTTTGAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAG-AAAAGGCATCCCGCTCTTTGAGG
64125 GCTAAAAAGC
Statistics
Matches: 538, Mismatches: 29, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
54 3 0.01
55 117 0.22
56 2 0.00
59 347 0.64
60 48 0.09
61 21 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (59 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
Done.