Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold168
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2098754
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
File 15 of 16
Found at i:1816410 original size:2 final size:2
Alignment explanation
Indices: 1816403--1816437 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1816393 TCTACAAATG
1816403 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1816438 GACAACAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1817768 original size:34 final size:34
Alignment explanation
Indices: 1817722--1817939 Score: 282
Period size: 34 Copynumber: 6.5 Consensus size: 34
1817712 GTAAAAACCA
*
1817722 CCATTTAATCAACAATGGCAACCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* *
1817756 CCATTTAGTCAACAATGGTAAGCC-ACCAAATCAC
1 CCATTTAATCAACAATGGTAA-CCTACCAAATCTC
* *
1817790 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
*
1817824 CCATTTAATCAACAATGGTAAGCTACCAAATCT-
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
1817857 CCATTTAGTCAACAATGGCAAACC-ACCAAATCAC
1 CCATTTAATCAACAATGG-TAACCTACCAAATCTC
* * *
1817891 CCATTTAATCAACAATGGTAAACTACTAAATC-A
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
1817924 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
1817940 TCTCCCACTT
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
33 45 0.28
34 115 0.71
35 2 0.01
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAACCTACCAAATCTC
Found at i:1817836 original size:68 final size:67
Alignment explanation
Indices: 1817720--1817939 Score: 323
Period size: 67 Copynumber: 3.3 Consensus size: 67
1817710 TGGTAAAAAC
* * *
1817720 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
1817785 AT
66 AT
* * *
1817787 CACCCATTTAATCAACAATGGTAAGCTACCAAATTTCCCATTTAATCAACAATGGTAAGCTACCA
1 CA-CCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCA
1817852 AAT
65 AAT
* * * * * *
1817855 CTCCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACTAA
1 CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
1817920 AT
66 AT
1817922 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
1817940 TCTCCCACTT
Statistics
Matches: 136, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
67 75 0.55
68 61 0.45
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (67 bp):
CACCATTTAATCAACAATGGCAAACTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
AT
Found at i:1822398 original size:34 final size:34
Alignment explanation
Indices: 1822350--1822566 Score: 262
Period size: 34 Copynumber: 6.4 Consensus size: 34
1822340 GTAAAAACCA
* *
1822350 CCATTTAATTAACAATGGCAACCTACCAAATCTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
1822384 CCATTTAGTCAACAATGATAAGCC-ACCAAATCAC
1 CCATTTAATCAACAATGGTAA-CCTACCAAATCTC
* *
1822418 CCATTTAATCAACAATGGTAAGCTACCAAATTTC
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
*
1822452 CCATTTAATCAACAATGGTAAGCTACCAAATCT-
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
* * *
1822485 CCATTTAGTCAACAATGGCAAACC-ACCAAATCAC
1 CCATTTAATCAACAATGG-TAACCTACCAAATCTC
* * *
1822519 CCATTTAATCAACAATGGTAAACTACTAAATC-A
1 CCATTTAATCAACAATGGTAACCTACCAAATCTC
1822552 CCATTTAATCAACAA
1 CCATTTAATCAACAA
1822567 GTACTGTTTG
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
33 44 0.28
34 112 0.71
35 2 0.01
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (34 bp):
CCATTTAATCAACAATGGTAACCTACCAAATCTC
Found at i:1822524 original size:67 final size:67
Alignment explanation
Indices: 1822348--1822566 Score: 296
Period size: 67 Copynumber: 3.3 Consensus size: 67
1822338 TGGTAAAAAC
* * * *
1822348 CACCATTTAATTAACAATGGC-AACCTACCAAATCTCCCATTTAGTCAACAATGATAAGCCACCA
1 CACCATTTAATCAACAATGGCAAACC-ACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCA
1822412 AAT
65 AAT
* * * *
1822415 CACCCATTTAATCAACAATGGTAAGCTACCAAATTTCCCATTTAATCAACAATGGTAAGCTACCA
1 CA-CCATTTAATCAACAATGGCAAACCACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCA
1822480 AAT
65 AAT
* * * * *
1822483 CTCCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACTAA
1 CACCATTTAATCAACAATGGCAAACCACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
1822548 AT
66 AT
1822550 CACCATTTAATCAACAA
1 CACCATTTAATCAACAA
1822567 GTACTGTTTG
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
67 74 0.56
68 55 0.42
69 2 0.02
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (67 bp):
CACCATTTAATCAACAATGGCAAACCACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAA
AT
Found at i:1822526 original size:101 final size:101
Alignment explanation
Indices: 1822348--1822566 Score: 334
Period size: 101 Copynumber: 2.2 Consensus size: 101
1822338 TGGTAAAAAC
* * *
1822348 CACCATTTAATTAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGATAAGCCACCAA
1 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGACAAACCACCAA
*
1822413 ATCACCCATTTAATCAACAATGGTAAGCTACCAAATTT
66 ATCACCCATTTAATCAACAATGGTAAACTACCAAA--T
* * *
1822451 C-CCATTTAATCAACAATGGTAAGCTACCAAATCT-CCATTTAGTCAACAATGGCAAACCACCAA
1 CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGACAAACCACCAA
*
1822514 ATCACCCATTTAATCAACAATGGTAAACTACTAAAT
66 ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
1822550 CACCATTTAATCAACAA
1 CACCATTTAATCAACAA
1822567 GTACTGTTTG
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
99 2 0.02
100 15 0.14
101 59 0.55
102 30 0.28
103 1 0.01
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (101 bp):
CACCATTTAATCAACAATGGCAACCTACCAAATCTCCCATTTAGTCAACAATGACAAACCACCAA
ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
Found at i:1823877 original size:108 final size:108
Alignment explanation
Indices: 1823739--1823953 Score: 351
Period size: 108 Copynumber: 2.0 Consensus size: 108
1823729 TTTTGGAGTC
**
1823739 TATATATATATATACACACAACAAACACACAAAGTATCCAATTTCAACAAACAAAATCAGCATGG
1 TATATATATATATACACACAACAAACACACAAAGTATCCAATTTCAACAAACAAAATCAGCATAA
*
1823804 CTTGTTGGCTTTCTATTATTCCAACTTAATTCTACAAATGATA
66 CTTGGTGGCTTTCTATTATTCCAACTTAATTCTACAAATGATA
* * * *
1823847 TATATATATATATATAGACAA-AAAGGACACAAAGTATCCAATTTCAATAAACAAAATCAGCATA
1 TATATATATATATACACACAACAAA-CACACAAAGTATCCAATTTCAACAAACAAAATCAGCATA
1823911 ACTTGGTGGCTTTCTATTATTCCAACTTAATTCTACAAATGAT
65 ACTTGGTGGCTTTCTATTATTCCAACTTAATTCTACAAATGAT
1823954 GACGGCTTTG
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
107 3 0.03
108 96 0.97
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.31
Consensus pattern (108 bp):
TATATATATATATACACACAACAAACACACAAAGTATCCAATTTCAACAAACAAAATCAGCATAA
CTTGGTGGCTTTCTATTATTCCAACTTAATTCTACAAATGATA
Found at i:1824685 original size:2 final size:2
Alignment explanation
Indices: 1824680--1824712 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1824670 CCCTTTTTTC
1824680 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1824713 GATAAATTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1825846 original size:15 final size:15
Alignment explanation
Indices: 1825826--1825855 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1825816 ATTCACGTAT
*
1825826 TTATCGATAGATATA
1 TTATCGATACATATA
1825841 TTATCGATACATATA
1 TTATCGATACATATA
1825856 AAAATCGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (15 bp):
TTATCGATACATATA
Found at i:1826205 original size:13 final size:13
Alignment explanation
Indices: 1826187--1826211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1826177 CTTTTTGCAG
1826187 AAGAAAAAAGGAA
1 AAGAAAAAAGGAA
1826200 AAGAAAAAAGGA
1 AAGAAAAAAGGA
1826212 GAAAATTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAGGAA
Found at i:1826930 original size:3 final size:3
Alignment explanation
Indices: 1826922--1826950 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
1826912 CCGTCTACAA
1826922 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1826951 GAAAGGCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1827375 original size:6 final size:6
Alignment explanation
Indices: 1827366--1827395 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
1827356 TTCTGCTCTC
*
1827366 TCTCAG TCTCAG TCTCAG CCTCAG TCTCAG
1 TCTCAG TCTCAG TCTCAG TCTCAG TCTCAG
1827396 CCTCCTAGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.37, G:0.17, T:0.30
Consensus pattern (6 bp):
TCTCAG
Found at i:1827383 original size:12 final size:12
Alignment explanation
Indices: 1827366--1827399 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
1827356 TTCTGCTCTC
*
1827366 TCTCAGTCTCAG
1 TCTCAGCCTCAG
1827378 TCTCAGCCTCAG
1 TCTCAGCCTCAG
1827390 TCTCAGCCTC
1 TCTCAGCCTC
1827400 CTAGGCCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.41, G:0.15, T:0.29
Consensus pattern (12 bp):
TCTCAGCCTCAG
Found at i:1828316 original size:34 final size:34
Alignment explanation
Indices: 1828269--1828420 Score: 195
Period size: 34 Copynumber: 4.5 Consensus size: 34
1828259 GGTAAAAACC
*
1828269 ACCATTTAATCAACAATAGTAACCTACCAAATCT
1 ACCATTTAATCAACAATGGTAACCTACCAAATCT
*
1828303 ACCATTTAGTCAACAATGGTAAGCC-ACCAAATC-
1 ACCATTTAATCAACAATGGTAA-CCTACCAAATCT
* *
1828336 ACCCATTTAATCAATAATGGTAAGCTACCAAAT-T
1 A-CCATTTAATCAACAATGGTAACCTACCAAATCT
* *
1828370 TCTCATTTAATCAACAATGGTAAGCTACCAAATCT
1 AC-CATTTAATCAACAATGGTAACCTACCAAATCT
1828405 -CCATTTAATCAACAAT
1 ACCATTTAATCAACAAT
1828421 TCTCTCACTT
Statistics
Matches: 105, Mismatches: 7, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
33 18 0.17
34 84 0.80
35 3 0.03
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (34 bp):
ACCATTTAATCAACAATGGTAACCTACCAAATCT
Found at i:1832865 original size:34 final size:34
Alignment explanation
Indices: 1832822--1832975 Score: 172
Period size: 34 Copynumber: 4.6 Consensus size: 34
1832812 TGTTTGGTAA
*
1832822 AAATC-ACCATTTAATCAACAATGACAACCTACC
1 AAATCTACCATTTAATCAACAATGATAACCTACC
* * *
1832855 AAATCTACCATTTAGTCAACAATGGTAACCCACC
1 AAATCTACCATTTAATCAACAATGATAACCTACC
* * *
1832889 AAAT-TACCATTTAATCAATAATGGTAAGCTACC
1 AAATCTACCATTTAATCAACAATGATAACCTACC
* * *
1832922 AAAT-TTCTCATTTAATCAACAATGATAAGCTACT
1 AAATCTAC-CATTTAATCAACAATGATAACCTACC
*
1832956 AAATCT-CTATTTAATCAACA
1 AAATCTACCATTTAATCAACA
1832976 TTTTTTTCAC
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
33 48 0.46
34 56 0.53
35 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (34 bp):
AAATCTACCATTTAATCAACAATGATAACCTACC
Found at i:1832968 original size:67 final size:67
Alignment explanation
Indices: 1832822--1832975 Score: 168
Period size: 67 Copynumber: 2.3 Consensus size: 67
1832812 TGTTTGGTAA
* * *
1832822 AAATCACCATTTAATCAACAATGACAACCTACCAAATCTACCATTTAGTCAACAATGGTAACCCA
1 AAATTACCATTTAATCAACAATGACAACCTACCAAATCTACCATTTAATCAACAATGATAACCCA
1832887 CC
66 CC
* ** * * * *
1832889 AAATTACCATTTAATCAATAATGGTAAGCTACCAAAT-TTCTCATTTAATCAACAATGATAAGCT
1 AAATTACCATTTAATCAACAATGACAACCTACCAAATCTAC-CATTTAATCAACAATGATAACCC
*
1832953 ACT
65 ACC
*
1832956 AAATCT-CTATTTAATCAACA
1 AAAT-TACCATTTAATCAACA
1832976 TTTTTTTCAC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
66 2 0.03
67 69 0.96
68 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (67 bp):
AAATTACCATTTAATCAACAATGACAACCTACCAAATCTACCATTTAATCAACAATGATAACCCA
CC
Found at i:1833236 original size:15 final size:15
Alignment explanation
Indices: 1833216--1833255 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
1833206 TCGTTATCAC
1833216 TTAAATAATTTAAAT
1 TTAAATAATTTAAAT
*
1833231 TTAAATATTTTAAAT
1 TTAAATAATTTAAAT
1833246 TTAAATAATT
1 TTAAATAATT
1833256 AGTCACTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAATAATTTAAAT
Found at i:1844995 original size:21 final size:22
Alignment explanation
Indices: 1844970--1845029 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 22
1844960 ATCAATATTA
1844970 AAATAAGATAAAAATATAATAT
1 AAATAAGATAAAAATATAATAT
*
1844992 -AAT-A-TTAAAAA-ATAATAT
1 AAATAAGATAAAAATATAATAT
*
1845010 AAATATGATAAAAAATATAA
1 AAATAAGAT-AAAAATATAA
1845030 ATATTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 9
0.71 0.07 0.21
Matches are distributed among these distances:
18 7 0.23
19 9 0.30
20 1 0.03
21 4 0.13
22 5 0.17
23 4 0.13
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.28
Consensus pattern (22 bp):
AAATAAGATAAAAATATAATAT
Found at i:1845027 original size:31 final size:31
Alignment explanation
Indices: 1844969--1845027 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
1844959 TATCAATATT
*
1844969 AAAATAAGATAAAAATATAATATAATATTAA
1 AAAATAAGATAAAAATATAATAAAATATTAA
* *
1845000 AAAATAATATAAATATGATAA-AAAATAT
1 AAAATAAGATAAAAAT-ATAATAAAATAT
1845028 AAATATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 20 0.83
32 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (31 bp):
AAAATAAGATAAAAATATAATAAAATATTAA
Found at i:1845056 original size:25 final size:26
Alignment explanation
Indices: 1845022--1845091 Score: 106
Period size: 25 Copynumber: 2.7 Consensus size: 26
1845012 ATATGATAAA
1845022 AAATATAAATATTTTAAAATTTATAT
1 AAATATAAATATTTTAAAATTTATAT
*
1845048 -AATATAAATATATTAAAATTTATAT
1 AAATATAAATATTTTAAAATTTATAT
*
1845073 AAATATAATATAATTTAAA
1 AAATATAA-ATATTTTAAA
1845092 TATAATTATG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 24 0.62
26 7 0.18
27 8 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
AAATATAAATATTTTAAAATTTATAT
Found at i:1845087 original size:20 final size:21
Alignment explanation
Indices: 1845047--1845118 Score: 74
Period size: 20 Copynumber: 3.4 Consensus size: 21
1845037 AAAATTTATA
* *
1845047 TAATATAAATATATTAAAATT
1 TAATATAAATATAATATAATT
1845068 T-ATATAAATATAATATAATT
1 TAATATAAATATAATATAATT
* * *
1845088 TAAATATAATTATGATATAATA
1 T-AATATAAATATAATATAATT
*
1845110 AAATATAAA
1 TAATATAAA
1845119 AAATAATGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 18 0.43
21 8 0.19
22 16 0.38
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (21 bp):
TAATATAAATATAATATAATT
Found at i:1845088 original size:45 final size:43
Alignment explanation
Indices: 1845003--1845118 Score: 105
Period size: 43 Copynumber: 2.7 Consensus size: 43
1844993 ATATTAAAAA
**
1845003 ATAATATAAATATGATAAAAAATATAAATATTTTAAAATTTAT
1 ATAATATAAATATGATAAAAAATATAAATATAATAAAATTTAT
* *
1845046 ATAATATAAATAT-ATTAAAATTTATATAAATATAATATAA-TT-T
1 ATAATATAAATATGA-TAAAA--AATATAAATATAATAAAATTTAT
*
1845089 A-AATATAATTATGATATAATAAAATATAAA
1 ATAATATAAATATG--ATAA-AAAATATAAA
1845119 AAATAATGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
42 11 0.18
43 27 0.45
44 5 0.08
45 17 0.28
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (43 bp):
ATAATATAAATATGATAAAAAATATAAATATAATAAAATTTAT
Found at i:1845105 original size:22 final size:21
Alignment explanation
Indices: 1844980--1845118 Score: 65
Period size: 20 Copynumber: 6.5 Consensus size: 21
1844970 AAATAAGATA
1844980 AAAATAT-AATATAATATTAA-
1 AAAATATAAATATAATA-TAAT
1845000 AAAATAATATAA-AT-ATGATAA-
1 AAAAT-ATA-AATATAAT-ATAAT
* *
1845021 AAAATATAAATATTTTAAAATTTAT
1 AAAATATAAATA---TAATA-TAAT
* * *
1845046 ATAATATAAATATATTAAAAT
1 AAAATATAAATATAATATAAT
**
1845067 -TTATATAAATATAATATAATT
1 AAAATATAAATATAATATAA-T
* * *
1845088 TAAATATAATTATGATATAAT
1 AAAATATAAATATAATATAAT
1845109 AAAATATAAA
1 AAAATATAAA
1845119 AAATAATGTT
Statistics
Matches: 90, Mismatches: 16, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
19 2 0.02
20 25 0.28
21 24 0.27
22 21 0.23
23 4 0.04
24 3 0.03
25 11 0.12
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (21 bp):
AAAATATAAATATAATATAAT
Found at i:1846505 original size:183 final size:183
Alignment explanation
Indices: 1846186--1846519 Score: 625
Period size: 183 Copynumber: 1.8 Consensus size: 183
1846176 AAGAGTCAGT
*
1846186 GGCAGAAGCGGAGAAGAAGGACGCATCGATTGAAACGATGTCGGTTTTGGAGGAAAACCCAGATT
1 GGCAGAAGCAGAGAAGAAGGACGCATCGATTGAAACGATGTCGGTTTTGGAGGAAAACCCAGATT
1846251 CACCATTGAAGAAGAGGACGCCGAGGTGGTCAGACATTTGGCTCAAAAACACAAAGCCATTAAAG
66 CACCATTGAAGAAGAGGACGCCGAGGTGGTCAGACATTTGGCTCAAAAACACAAAGCCATTAAAG
1846316 CATGTGGTGTTCGCTATGCAGAAGAAAGTTAAAGAGTCAGTGGCAGAAGCAGG
131 CATGTGGTGTTCGCTATGCAGAAGAAAGTTAAAGAGTCAGTGGCAGAAGCAGG
*
1846369 GGCAGAGGCAGAGAAGAAGGACGCATTC-ATTGAAACGATGTCGGTTTTGGAGGAAAACCCAGAT
1 GGCAGAAGCAGAGAAGAAGGACGCA-TCGATTGAAACGATGTCGGTTTTGGAGGAAAACCCAGAT
1846433 TCACCATTGAAGAAGAGGACGCCGAGGTGGTCAGACATTTGGCTCAAAAACACAAAGCCATTAAA
65 TCACCATTGAAGAAGAGGACGCCGAGGTGGTCAGACATTTGGCTCAAAAACACAAAGCCATTAAA
*
1846498 TCATGTGGTGTTCGCTATGCAG
130 GCATGTGGTGTTCGCTATGCAG
1846520 CTTCAGTCTT
Statistics
Matches: 147, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
183 145 0.99
184 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.19
Consensus pattern (183 bp):
GGCAGAAGCAGAGAAGAAGGACGCATCGATTGAAACGATGTCGGTTTTGGAGGAAAACCCAGATT
CACCATTGAAGAAGAGGACGCCGAGGTGGTCAGACATTTGGCTCAAAAACACAAAGCCATTAAAG
CATGTGGTGTTCGCTATGCAGAAGAAAGTTAAAGAGTCAGTGGCAGAAGCAGG
Found at i:1849092 original size:20 final size:20
Alignment explanation
Indices: 1849054--1849097 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1849044 CCAATGCATT
1849054 GTTATATATATAATTTTTTG
1 GTTATATATATAATTTTTTG
* *
1849074 GTTATTTAT-TAATTGTTTTT
1 GTTATATATATAATT-TTTTG
1849094 GTTA
1 GTTA
1849098 CTAGTACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.25, C:0.00, G:0.11, T:0.64
Consensus pattern (20 bp):
GTTATATATATAATTTTTTG
Found at i:1849546 original size:15 final size:16
Alignment explanation
Indices: 1849501--1849552 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 16
1849491 TGTTATTTAA
*
1849501 ATTTTAATATATTTATATA
1 ATTTT-ATAT-TTTA-ATT
1849520 ATTTTATATTTTAATT
1 ATTTTATATTTTAATT
*
1849536 ATTTT-TATTTTATTT
1 ATTTTATATTTTAATT
1849551 AT
1 AT
1849553 AAAATATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 11 0.35
16 7 0.23
17 4 0.13
18 4 0.13
19 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTTTATATTTTAATT
Found at i:1849551 original size:26 final size:25
Alignment explanation
Indices: 1849486--1849553 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
1849476 ATAATTGATA
* *
1849486 ATTTATGTTATTTAAATTTTAATAT
1 ATTTATATTATTTATATTTTAATAT
*
1849511 ATTTATATAATTTTATATTTTAATTAT
1 ATTTATATTA-TTTATATTTTAA-TAT
* *
1849538 TTTTATTTTATTTATA
1 ATTTATATTATTTATA
1849554 AAATATAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
25 8 0.23
26 17 0.49
27 10 0.29
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (25 bp):
ATTTATATTATTTATATTTTAATAT
Found at i:1860335 original size:57 final size:57
Alignment explanation
Indices: 1860274--1860391 Score: 236
Period size: 57 Copynumber: 2.1 Consensus size: 57
1860264 TTTACCTAAG
1860274 TTGGGCTACTTATGCATTAATATAATTAATAATATTATATTATATGGTACTTGGCAC
1 TTGGGCTACTTATGCATTAATATAATTAATAATATTATATTATATGGTACTTGGCAC
1860331 TTGGGCTACTTATGCATTAATATAATTAATAATATTATATTATATGGTACTTGGCAC
1 TTGGGCTACTTATGCATTAATATAATTAATAATATTATATTATATGGTACTTGGCAC
1860388 TTGG
1 TTGG
1860392 ACACGTGGCA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (57 bp):
TTGGGCTACTTATGCATTAATATAATTAATAATATTATATTATATGGTACTTGGCAC
Found at i:1861851 original size:6 final size:6
Alignment explanation
Indices: 1861840--1861866 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
1861830 ACATACATAG
1861840 ATATGT ATATGT ATATGT ATATGT ATA
1 ATATGT ATATGT ATATGT ATATGT ATA
1861867 CCTGATTGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (6 bp):
ATATGT
Found at i:1863011 original size:2 final size:2
Alignment explanation
Indices: 1863006--1863042 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1862996 TTTTCTTTGT
1863006 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1863043 GTGTGTGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1863272 original size:2 final size:2
Alignment explanation
Indices: 1863265--1863302 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1863255 TCTTTCAGCA
1863265 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1863303 TTTCTTCTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1871730 original size:3 final size:3
Alignment explanation
Indices: 1871722--1871787 Score: 69
Period size: 3 Copynumber: 21.7 Consensus size: 3
1871712 CTCAAGTTCC
** * * *
1871722 AAG AAG AAG AAG AAG AAG ATT AAG AAG AAG AGG AAG AAAG GAT AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG
*
1871768 AAG AAG AAG AAG AGG AAG AA
1 AAG AAG AAG AAG AAG AAG AA
1871788 AGGATAAATC
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (3 bp):
AAG
Found at i:1877059 original size:74 final size:74
Alignment explanation
Indices: 1876971--1877118 Score: 278
Period size: 74 Copynumber: 2.0 Consensus size: 74
1876961 AAAGGTTCAA
* *
1876971 ATTGTTAGATTGGGCTTTTAGACAAACTTTTTCTTTTTCAAATTTACTTCTATGGATATAAGCTA
1 ATTGTTAGATTGGGCTTTAAGACAAAATTTTTCTTTTTCAAATTTACTTCTATGGATATAAGCTA
1877036 ATACATCAG
66 ATACATCAG
1877045 ATTGTTAGATTGGGCTTTAAGACAAAATTTTTCTTTTTCAAATTTACTTCTATGGATATAAGCTA
1 ATTGTTAGATTGGGCTTTAAGACAAAATTTTTCTTTTTCAAATTTACTTCTATGGATATAAGCTA
1877110 ATACATCAG
66 ATACATCAG
1877119 TCATAAACAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.43
Consensus pattern (74 bp):
ATTGTTAGATTGGGCTTTAAGACAAAATTTTTCTTTTTCAAATTTACTTCTATGGATATAAGCTA
ATACATCAG
Found at i:1878998 original size:2 final size:2
Alignment explanation
Indices: 1878993--1879020 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1878983 TTTTTATTTT
1878993 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1879021 CCTGAGGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1884931 original size:2 final size:2
Alignment explanation
Indices: 1884924--1884951 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1884914 GCATCAAAAC
1884924 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1884952 GTAGGATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1895672 original size:2 final size:2
Alignment explanation
Indices: 1895665--1895694 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1895655 GAAAATGCCC
*
1895665 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1895695 TAAAAGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1895894 original size:6 final size:6
Alignment explanation
Indices: 1895883--1895916 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
1895873 ATATGTTGCC
*
1895883 TGAGGG TGAGGG TGAGGG TGAGGG TGAGGC TGAG
1 TGAGGG TGAGGG TGAGGG TGAGGG TGAGGG TGAG
1895917 CCTGACTGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.03, G:0.62, T:0.18
Consensus pattern (6 bp):
TGAGGG
Found at i:1898552 original size:18 final size:19
Alignment explanation
Indices: 1898531--1898566 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
1898521 TTATAAAAAA
*
1898531 TTTAAATTATTT-TTATTT
1 TTTAAATAATTTATTATTT
1898549 TTTAAATAATTTATTATT
1 TTTAAATAATTTATTATT
1898567 ATTATTATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTAAATAATTTATTATTT
Found at i:1899356 original size:2 final size:2
Alignment explanation
Indices: 1899349--1899382 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1899339 ATCTTCTCCT
1899349 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1899383 CCCCACCTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1905193 original size:5 final size:5
Alignment explanation
Indices: 1905183--1905214 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
1905173 TAAGATAGCC
1905183 TATTA TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TA
1905215 AGTTTTCCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:1908509 original size:50 final size:50
Alignment explanation
Indices: 1908455--1908565 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
1908445 GAAGTGATTG
* * *
1908455 TAATTGTTGATGATTTTTCA-TCAAC-TTTGTACAATAAAGAGAGGTGATCA
1 TAATTGTTGACGATTTTTCACT-AACTTTTG-ACAATAAAGAAAGGTGACCA
* * * *
1908505 TAATTATTAACGATTTTTCACTAACTTTTGATAATAGAGAAAGGTGACCA
1 TAATTGTTGACGATTTTTCACTAACTTTTGACAATAAAGAAAGGTGACCA
1908555 TAATTGTTGAC
1 TAATTGTTGAC
1908566 TCTAAGTATA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
50 45 0.90
51 5 0.10
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (50 bp):
TAATTGTTGACGATTTTTCACTAACTTTTGACAATAAAGAAAGGTGACCA
Found at i:1913064 original size:51 final size:49
Alignment explanation
Indices: 1912951--1913163 Score: 273
Period size: 50 Copynumber: 4.2 Consensus size: 49
1912941 GGAAAGTACT
** * * * * *
1912951 TTTGACAATAGAGAAAGATGACCACAATTGTTGATGATTTTTCACTAACC
1 TTTGACAATAGAGGGAG-TGATCATAATTGTTGACGATTCTTCACCAACC
* * *
1913001 TTTGATAATAGAGAGATGTGATCGTAATTGTTGACGATTCTTCACCTAACC
1 TTTGACAATAGAGGGA-GTGATCATAATTGTTGACGATTCTTCACC-AACC
*
1913052 TTTGACAATAGAGGGAGATGATCATAATTGTTGACGATTCTTCATCAACC
1 TTTGACAATAGAGGGAG-TGATCATAATTGTTGACGATTCTTCACCAACC
*
1913102 TTTGACAATAGAGGGAGGTGGTCATAATTGTTGACGATTCTTCACCAACC
1 TTTGACAATAGAGGGA-GTGATCATAATTGTTGACGATTCTTCACCAACC
1913152 TTTGACAATAGA
1 TTTGACAATAGA
1913164 AAAAAGTGAC
Statistics
Matches: 145, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
50 99 0.68
51 46 0.32
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (49 bp):
TTTGACAATAGAGGGAGTGATCATAATTGTTGACGATTCTTCACCAACC
Found at i:1913130 original size:101 final size:100
Alignment explanation
Indices: 1912951--1913186 Score: 305
Period size: 101 Copynumber: 2.4 Consensus size: 100
1912941 GGAAAGTACT
* * *
1912951 TTTGACAATAGAGAAAGATGACCACAATTGTTGATGATTTTTCACTAACCTTTGATAATAGAGAG
1 TTTGACAATAGAGAAAGATGACCACAATTGTTGACGATTCTTCACTAACCTTTGACAATAGAGAG
* *
1913016 ATGTGATCGTAATTGTTGACGATTCTTCACCTAACC
66 AGGTGATCATAATTGTTGACGATTCTTCACC-AACC
** * * *
1913052 TTTGACAATAGAGGGAGATGATCATAATTGTTGACGATTCTTCA-TCAACCTTTGACAATAGAGG
1 TTTGACAATAGAGAAAGATGACCACAATTGTTGACGATTCTTCACT-AACCTTTGACAATAGAGA
*
1913116 GAGGTGGTCATAATTGTTGACGATTCTTCACCAACC
65 GAGGTGATCATAATTGTTGACGATTCTTCACCAACC
* * *
1913152 TTTGACAATAGA-AAAAAGTGACTATAATTGTTGAC
1 TTTGACAATAGAGAAAGA-TGACCACAATTGTTGAC
1913187 TCTAAGTATA
Statistics
Matches: 117, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
99 2 0.02
100 32 0.27
101 83 0.71
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (100 bp):
TTTGACAATAGAGAAAGATGACCACAATTGTTGACGATTCTTCACTAACCTTTGACAATAGAGAG
AGGTGATCATAATTGTTGACGATTCTTCACCAACC
Found at i:1915168 original size:18 final size:19
Alignment explanation
Indices: 1915147--1915184 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
1915137 AATTAAATTA
1915147 TATTTAAAATA-TAAAAAT
1 TATTTAAAATATTAAAAAT
**
1915165 TATTTTTAATATTAAAAAT
1 TATTTAAAATATTAAAAAT
1915184 T
1 T
1915185 TTAAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTTAAAATATTAAAAAT
Found at i:1915182 original size:19 final size:20
Alignment explanation
Indices: 1915141--1915184 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1915131 AATTTTAATT
1915141 AAATTATATTTAAAATATAA
1 AAATTATATTTAAAATATAA
* *
1915161 AAATTATTTTTAATAT-TAA
1 AAATTATATTTAAAATATAA
1915180 AAATT
1 AAATT
1915185 TTAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATTATATTTAAAATATAA
Found at i:1918531 original size:3 final size:3
Alignment explanation
Indices: 1918518--1918553 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
1918508 AATATTGGCG
*
1918518 GTA GCA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA
1 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA
1918554 CAACTAGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.31
Consensus pattern (3 bp):
GTA
Found at i:1920126 original size:3 final size:3
Alignment explanation
Indices: 1920118--1920163 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
1920108 ATTTCATGAC
*
1920118 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AGA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1920164 GTAACAATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:1929795 original size:147 final size:148
Alignment explanation
Indices: 1929527--1929801 Score: 516
Period size: 147 Copynumber: 1.9 Consensus size: 148
1929517 ATTAAAATTA
* *
1929527 TTAAATAACGATTATAATATCGTATTATCATTGCTATTTAAACTCTTGATTTATCTTTCATCATT
1 TTAAATAACGATTATAATATCGTATTATCATTGCTATTTAAACTCCTGATCTATCTTTCATCATT
*
1929592 TTTGTGATCCAGTTGTATGGAGATGGAGTCTATTCTTGATTTGGCTAAACAACGAACCAAGGATT
66 TTTGTGATCCAATTGTATGGAGATGGAGTCTATTCTTGATTTGGCTAAACAACGAACCAAGGATT
1929657 TGGCTATTTAAACTATCG
131 TGGCTATTTAAACTATCG
1929675 TTAAATAACGATTATAATATCGTATTATCATTGCTATTTAAACTCCTGATCTATCTTTCA-CATT
1 TTAAATAACGATTATAATATCGTATTATCATTGCTATTTAAACTCCTGATCTATCTTTCATCATT
1929739 TTTGTGATCCAATTGTATGGAGATGGAGTCTATTCTTGATTTGGCTAAACAACGAACCAAGGA
66 TTTGTGATCCAATTGTATGGAGATGGAGTCTATTCTTGATTTGGCTAAACAACGAACCAAGGA
1929802 GGGCAAAAGT
Statistics
Matches: 124, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
147 66 0.53
148 58 0.47
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (148 bp):
TTAAATAACGATTATAATATCGTATTATCATTGCTATTTAAACTCCTGATCTATCTTTCATCATT
TTTGTGATCCAATTGTATGGAGATGGAGTCTATTCTTGATTTGGCTAAACAACGAACCAAGGATT
TGGCTATTTAAACTATCG
Found at i:1930596 original size:21 final size:20
Alignment explanation
Indices: 1930567--1930614 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
1930557 CTATCATTTA
1930567 ATAA-ATATTAAAATAATAAT
1 ATAATATATTAAAAT-ATAAT
* *
1930587 ATAATATATTTAAATATGAT
1 ATAATATATTAAAATATAAT
1930607 -TAATATAT
1 ATAATATAT
1930615 AGTGCATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.32
20 8 0.32
21 9 0.36
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
ATAATATATTAAAATATAAT
Found at i:1931097 original size:3 final size:3
Alignment explanation
Indices: 1931089--1931129 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
1931079 ATGAAAAATA
1931089 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1931130 ATTAAATTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:1931318 original size:2 final size:2
Alignment explanation
Indices: 1931311--1931360 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
1931301 GGTGTTCTTT
1931311 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1931353 TA TA TA TA
1 TA TA TA TA
1931361 ATACAATTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1938143 original size:2 final size:2
Alignment explanation
Indices: 1938136--1938163 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1938126 CAGATGATTA
1938136 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1938164 TAAGATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1946772 original size:2 final size:2
Alignment explanation
Indices: 1946753--1946791 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
1946743 GAAATTAATG
*
1946753 TA TA TA CTA TA T- TT TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1946792 GTGTATATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
1 1 0.03
2 31 0.91
3 2 0.06
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:1946798 original size:14 final size:13
Alignment explanation
Indices: 1946751--1946803 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 13
1946741 ATGAAATTAA
1946751 TGTATATACTATAT
1 TGTATATA-TATAT
*
1946765 TTTATATATATAT
1 TGTATATATATAT
*
1946778 ATATATATATATAT
1 -TGTATATATATAT
1946792 GTGTATAT-TATA
1 -TGTATATATATA
1946804 GACCTTTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
13 9 0.26
14 25 0.74
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (13 bp):
TGTATATATATAT
Found at i:1952433 original size:2 final size:2
Alignment explanation
Indices: 1952426--1952454 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1952416 AGTATATTAA
1952426 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1952455 CTTAATCTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1954531 original size:21 final size:21
Alignment explanation
Indices: 1954490--1954528 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1954480 TGTTTTGAGA
1954490 AAAAAATTATTTCATTAAAAT
1 AAAAAATTATTTCATTAAAAT
1954511 AAAAAATTA-TTC-TTAAAA
1 AAAAAATTATTTCATTAAAA
1954529 AATCACTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 9 0.50
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAAATTATTTCATTAAAAT
Found at i:1956372 original size:12 final size:12
Alignment explanation
Indices: 1956340--1956376 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 12
1956330 ATTATTTGAT
1956340 TTTAATAAAAAA
1 TTTAATAAAAAA
1956352 TTATCAATAAAAAA
1 TT-T-AATAAAAAA
1956366 TTTAATAAAAA
1 TTTAATAAAAA
1956377 TAAAATAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 11 0.48
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (12 bp):
TTTAATAAAAAA
Found at i:1956652 original size:14 final size:14
Alignment explanation
Indices: 1956628--1956660 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1956618 ATATTTAAAT
*
1956628 TTAAT-AAAAATTA
1 TTAATAAAAAATAA
1956641 TTAATAAAAAATAA
1 TTAATAAAAAATAA
1956655 TTAATA
1 TTAATA
1956661 TTAATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TTAATAAAAAATAA
Found at i:1956653 original size:20 final size:20
Alignment explanation
Indices: 1956630--1956673 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1956620 ATTTAAATTT
1956630 AATAA-AAATTATTAATAAAA
1 AATAATAAA-TATTAATAAAA
* *
1956650 AATAATTAATATTAATTAAA
1 AATAATAAATATTAATAAAA
1956670 AATA
1 AATA
1956674 TATTAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AATAATAAATATTAATAAAA
Found at i:1956671 original size:21 final size:20
Alignment explanation
Indices: 1956639--1956680 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
1956629 TAATAAAAAT
1956639 TATTAATAAAAA-ATAATTAA
1 TATTAATAAAAATAT-ATTAA
1956659 TATTAATTAAAAATATATTAA
1 TATTAA-TAAAAATATATTAA
1956680 T
1 T
1956681 TAAGAGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 12 0.60
22 2 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TATTAATAAAAATATATTAA
Found at i:1956680 original size:35 final size:34
Alignment explanation
Indices: 1956628--1956702 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 34
1956618 ATATTTAAAT
1956628 TTAA-TAAAAATTATTAA-TAAAAAATAATTAATA
1 TTAATTAAAAATTATTAATTAAAAAA-AATTAATA
* * *
1956661 TTAATTAAAAATATATTAATTAAGAGAAATTTATA
1 TTAATTAAAAAT-TATTAATTAAAAAAAATTAATA
1956696 TTAATTA
1 TTAATTA
1956703 GGAATTTAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 4 0.11
34 7 0.19
35 20 0.56
36 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (34 bp):
TTAATTAAAAATTATTAATTAAAAAAAATTAATA
Found at i:1959517 original size:16 final size:16
Alignment explanation
Indices: 1959494--1959539 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
1959484 CTTAAAATAC
1959494 AAAAATATTATTTTA-
1 AAAAATATTATTTTAT
1959509 AATAAATATTTATTTTAT
1 AA-AAATA-TTATTTTAT
*
1959527 AAAATTATTATTT
1 AAAAATATTATTT
1959540 GAATTAACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 2 0.07
16 11 0.41
17 12 0.44
18 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AAAAATATTATTTTAT
Found at i:1959683 original size:2 final size:2
Alignment explanation
Indices: 1959678--1959707 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1959668 CAATATATTC
1959678 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1959708 GTAACAGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1960186 original size:2 final size:2
Alignment explanation
Indices: 1960173--1960208 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
1960163 CCTCTTATCA
* *
1960173 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1960209 GGTTAAAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1960590 original size:87 final size:85
Alignment explanation
Indices: 1960439--1960610 Score: 299
Period size: 87 Copynumber: 2.0 Consensus size: 85
1960429 TTCATGGGAA
*
1960439 GGTATTTTGGAAATCAATTTAATTAAAGCTTTAATTGCGATCTAAATAATTAAGGAATCCAAATT
1 GGTATTTTGGAAATCAATTTAATTAAAGCTTTAATTGCGATCCAAATAATTAAGGAATCCAAATT
1960504 TCACTTTTATATATTTTTCT
66 TCACTTTTATATATTTTTCT
* *
1960524 GGTATTTTGGCAATCAATTTAATTAAAGCTAATTAATTGCGATCCAAATAATTAAGGAATCTAAA
1 GGTATTTTGGAAATCAATTTAATTAAAGCT--TTAATTGCGATCCAAATAATTAAGGAATCCAAA
1960589 TTTCACTTTTATATATTTTTCT
64 TTTCACTTTTATATATTTTTCT
1960611 TCCACCAAAT
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
85 29 0.35
87 53 0.65
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.43
Consensus pattern (85 bp):
GGTATTTTGGAAATCAATTTAATTAAAGCTTTAATTGCGATCCAAATAATTAAGGAATCCAAATT
TCACTTTTATATATTTTTCT
Found at i:1968343 original size:2 final size:2
Alignment explanation
Indices: 1968338--1968368 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1968328 ATGTACTAGT
1968338 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1968369 TAGTTTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1969751 original size:14 final size:14
Alignment explanation
Indices: 1969732--1969758 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1969722 AATTATCATT
1969732 ATTATTTAATTAAA
1 ATTATTTAATTAAA
1969746 ATTATTTAATTAA
1 ATTATTTAATTAA
1969759 GAACTGAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTATTTAATTAAA
Found at i:1971770 original size:2 final size:2
Alignment explanation
Indices: 1971763--1971801 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1971753 TGCTTCTGAG
1971763 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1971802 AATAAAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1974041 original size:17 final size:16
Alignment explanation
Indices: 1973997--1974045 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
1973987 AATTTTAAAA
1973997 TATAAAAATATTATTT
1 TATAAAAATATTATTT
1974013 TA-AATAAATATTTATTT
1 TATAA-AAATA-TTATTT
*
1974030 TATAAAATTATTATTT
1 TATAAAAATATTATTT
1974046 GAATGAACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 2 0.07
16 13 0.45
17 12 0.41
18 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATAAAAATATTATTT
Found at i:1979872 original size:3 final size:3
Alignment explanation
Indices: 1979864--1979891 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1979854 TCCATTCCTA
1979864 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1979892 CATGTCAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:1980577 original size:2 final size:2
Alignment explanation
Indices: 1980570--1980595 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1980560 ACATGCATTA
1980570 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1980596 GGCATATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1981205 original size:22 final size:19
Alignment explanation
Indices: 1981176--1981217 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
1981166 TAATTTTATT
1981176 TAAAATTAATTATAAAATATA
1 TAAAATTAA-TATAAAA-ATA
1981197 TAAATATTAATATAAAAATA
1 TAAA-ATTAATATAAAAATA
1981217 T
1 T
1981218 TTTTTAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAAATTAATATAAAAATA
Found at i:1981780 original size:19 final size:21
Alignment explanation
Indices: 1981758--1981796 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
1981748 ATTAATTTAG
1981758 TTTTATAT-ATTTTT-AATTT
1 TTTTATATGATTTTTCAATTT
1981777 TTTTATATGATTTTTCAATT
1 TTTTATATGATTTTTCAATT
1981797 ATATCATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (21 bp):
TTTTATATGATTTTTCAATTT
Found at i:1997481 original size:2 final size:2
Alignment explanation
Indices: 1997469--1997498 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1997459 GGAATAACTC
*
1997469 CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1997499 AATTTCAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:1997735 original size:28 final size:28
Alignment explanation
Indices: 1997695--1997750 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
1997685 ACAGGTGTAA
1997695 GCATATGAGTAAGGATCTCATAAAAATT
1 GCATATGAGTAAGGATCTCATAAAAATT
1997723 GCATATGAGTAAGGATCTCATAAAAATT
1 GCATATGAGTAAGGATCTCATAAAAATT
1997751 TCAATGCTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.18, T:0.29
Consensus pattern (28 bp):
GCATATGAGTAAGGATCTCATAAAAATT
Found at i:2000467 original size:2 final size:2
Alignment explanation
Indices: 2000460--2000489 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2000450 CTTTTGATGA
2000460 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2000490 GTATTATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2006345 original size:2 final size:2
Alignment explanation
Indices: 2006338--2006363 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2006328 AGGACACTTA
2006338 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2006364 TGAATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2006606 original size:3 final size:3
Alignment explanation
Indices: 2006598--2006631 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
2006588 AAGCCAAACC
2006598 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2006632 GCATTAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:2006849 original size:16 final size:16
Alignment explanation
Indices: 2006828--2006865 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2006818 TAAAATATAT
*
2006828 TTTTTATTATTTT-TAA
1 TTTTTATT-TTTTAAAA
2006844 TTTTTATTTTTTAAAA
1 TTTTTATTTTTTAAAA
2006860 TTTTTA
1 TTTTTA
2006866 ATGATGATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTATTTTTTAAAA
Found at i:2007013 original size:19 final size:17
Alignment explanation
Indices: 2006984--2007026 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 17
2006974 TACTTGATAA
2006984 AAAATATTTAATATCAAATT
1 AAAA-ATTTAAT-T-AAATT
2007004 AAAAATTTAATTAAATT
1 AAAAATTTAATTAAATT
2007021 ATAAAA
1 A-AAAA
2007027 GATGAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.27
18 5 0.23
19 7 0.32
20 4 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAAATTTAATTAAATT
Found at i:2007110 original size:12 final size:12
Alignment explanation
Indices: 2007089--2007128 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
2007079 GCAACGCCCT
* *
2007089 AATATTAATATA
1 AATATAAATACA
2007101 AATATAAATACA
1 AATATAAATACA
*
2007113 AATACAAATACA
1 AATATAAATACA
2007125 AATA
1 AATA
2007129 ATAGAATAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (12 bp):
AATATAAATACA
Found at i:2010896 original size:40 final size:40
Alignment explanation
Indices: 2010841--2010922 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 40
2010831 AAAAAAAAAA
* *
2010841 AATTGATTATTATAAAGTATTCTT-ATCAATTGTAAAGCAT
1 AATTGATTATCATAAAGTATT-TTCACCAATTGTAAAGCAT
*
2010881 AATTGATTATCATAAAGTATTTTCACCAATTGTAAATCAT
1 AATTGATTATCATAAAGTATTTTCACCAATTGTAAAGCAT
2010921 AA
1 AA
2010923 GACAATTCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (40 bp):
AATTGATTATCATAAAGTATTTTCACCAATTGTAAAGCAT
Found at i:2011195 original size:15 final size:16
Alignment explanation
Indices: 2011177--2011216 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
2011167 TTATTGAAGA
2011177 AAAAAATTTTGAGA-T-
1 AAAAAATTTT-AGATTG
2011192 AAAAAATTTTAGATTG
1 AAAAAATTTTAGATTG
2011208 AAAAAATTT
1 AAAAAATTT
2011217 GTAATAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.13
15 11 0.48
16 9 0.39
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAAATTTTAGATTG
Found at i:2011197 original size:16 final size:16
Alignment explanation
Indices: 2011176--2011229 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 16
2011166 ATTATTGAAG
2011176 AAAAAAATTTTGAGAT
1 AAAAAAATTTTGAGAT
2011192 -AAAAAATTTT-AGATT
1 AAAAAAATTTTGAGA-T
*
2011207 GAAAAAA-TTTGTA-AT
1 AAAAAAATTTTG-AGAT
2011222 AAAAAAAT
1 AAAAAAAT
2011230 ATGATCTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
14 3 0.09
15 21 0.66
16 7 0.22
17 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (16 bp):
AAAAAAATTTTGAGAT
Found at i:2011959 original size:106 final size:109
Alignment explanation
Indices: 2011873--2012281 Score: 333
Period size: 107 Copynumber: 3.8 Consensus size: 109
2011863 AAAAATTTAA
* *
2011873 TAAA-TAATAATGTATTAATTATTATTTTTAATAAAAATAATATTTAATTAACTTTAAAAAATTT
1 TAAATTAATAAAGTATTAATTATTATTTTTAATAAAAATAATATTTAATTAAATTTAAAAAATTT
* *
2011937 ACATTAATAAATTAAAATATTAATTATTTTTTTAAAATAAAAAAT
66 ACATTAACAAATTAAAATATTAATTA-TTATTTAAAATAAAAAAT
* * * ** * *
2011982 TAAATTAA-AAAGCATTTATTATTATTATTT--T--TAATTTTATTAAATTAACTTTAAAAAAAT
1 TAAATTAATAAAGTATTAATTATTATT-TTTAATAAAAATAATATTTAATTAAATTT-AAAAAAT
* * *
2012042 TTATATTAATAAATTAAAATATTAATTATTTTTTTAAAATAAAAAAT
64 TTACATTAACAAATTAAAATATTAATTA-TTATTTAAAATAAAAAAT
*
2012089 TAAATTAA-AAAGGGTTATTATTATATTATTTTTTAA-AATTAAA-AATAATTTAATTAAATTTA
1 TAAATTAATAAA--G-TATTAAT-TATTA-TTTTTAATAA--AAATAAT-ATTTAATTAAATTTA
***
2012151 AAAAA-TTACATTAACAAATTAAAATATTAATTATTATGTTTTTAT-AAAAAT
58 AAAAATTTACATTAACAAATTAAAATATTAATTATTAT-TTAAAATAAAAAAT
* * ** * **** * *
2012202 AAAAGT-ATTTATTATTAATT-TT-TAAAAAATAAAAAATGATATTTAATTAAATTTTAAAAATT
1 TAAATTAATAAAGTATTAATTATTATTTTTAAT-AAAAATAATATTTAATTAAATTTAAAAAATT
2012264 TACATTAACAAATTAAAA
65 TACATTAACAAATTAAAA
2012282 AATAATATTT
Statistics
Matches: 245, Mismatches: 34, Indels: 44
0.76 0.11 0.14
Matches are distributed among these distances:
106 42 0.17
107 85 0.35
108 5 0.02
109 21 0.09
110 16 0.07
111 8 0.03
112 3 0.01
113 14 0.06
114 30 0.12
115 7 0.03
116 14 0.06
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (109 bp):
TAAATTAATAAAGTATTAATTATTATTTTTAATAAAAATAATATTTAATTAAATTTAAAAAATTT
ACATTAACAAATTAAAATATTAATTATTATTTAAAATAAAAAAT
Found at i:2011988 original size:66 final size:64
Alignment explanation
Indices: 2011845--2011990 Score: 172
Period size: 66 Copynumber: 2.2 Consensus size: 64
2011835 TAATTTTTTT
**
2011845 ATAAATTAATTAAATTTAAAAAATTTAATAAATAATAATGTATTAATTATTATTTTTAATAAAA
1 ATAAATTAATTAAATTTAAAAAATTTAATAAATAATAAAATATTAATTATTATTTTTAATAAAA
* *
2011909 ATAATATTTAATTAACTTTAAAAAATTTACATTAATAAATTAAAATATTAATTATT-TTTTTAA-
1 ATAA-A-TTAATTAAATTTAAAAAATTTA-ATAAAT-AA-TAAAATATTAATTATTATTTTTAAT
2011972 AATAA
61 AA-AA
2011977 A-AAATTAAATTAAA
1 ATAAATT-AATTAAA
2011991 AAGCATTTAT
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
64 4 0.06
65 3 0.04
66 28 0.40
67 9 0.13
68 12 0.17
69 14 0.20
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (64 bp):
ATAAATTAATTAAATTTAAAAAATTTAATAAATAATAAAATATTAATTATTATTTTTAATAAAA
Found at i:2012096 original size:46 final size:47
Alignment explanation
Indices: 2012035--2012163 Score: 108
Period size: 46 Copynumber: 2.8 Consensus size: 47
2012025 ATTAACTTTA
*
2012035 AAAAAATTTATATTAATAAA-TTAAAATATTA-ATTATTTTTTTAAAAT
1 AAAAAA-TTAAATTAATAAAGTTAAAATATTACATTA-TTTTTTAAAAT
* *
2012082 AAAAAATTAAATTAA-AAAGGGTT--ATTATTATATTATTTTTTAAAAT
1 AAAAAATTAAATTAATAAA--GTTAAAATATTACATTATTTTTTAAAAT
* * * *
2012128 TAAAAA-TAATTTAATTAAATTTAAAAAATTACATTA
1 AAAAAATTAAATTAA-TAAAGTTAAAATATTACATTA
2012164 ACAAATTAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
45 12 0.18
46 30 0.45
47 22 0.33
48 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.43
Consensus pattern (47 bp):
AAAAAATTAAATTAATAAAGTTAAAATATTACATTATTTTTTAAAAT
Found at i:2012218 original size:32 final size:29
Alignment explanation
Indices: 2012161--2012235 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 29
2012151 AAAAATTACA
* *
2012161 TTAACAAATTAAAATATTAATTATTATGTTT
1 TTAA-AAAATAAAATATTAATTATTA-ATTT
*
2012192 TTATAAAAATAAAAGTATTTATTATTAATTT
1 TTA-AAAAATAAAA-TATTAATTATTAATTT
2012223 TTAAAAAATAAAA
1 TTAAAAAATAAAA
2012236 AATGATATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 10 0.26
31 17 0.44
32 12 0.31
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (29 bp):
TTAAAAAATAAAATATTAATTATTAATTT
Found at i:2012282 original size:46 final size:46
Alignment explanation
Indices: 2012223--2012329 Score: 128
Period size: 46 Copynumber: 2.3 Consensus size: 46
2012213 TTATTAATTT
* * * **
2012223 TTAA-AAAATAAAAAATGATATTTAATTAAATTTTAAAAATTTA-CA
1 TTAACAAATTAAAAAATAATATTTAA-GAAATTAAAAAAATTTATCA
2012268 TTAACAAATTAAAAAATAATATTTAAGAAATTAAAAAAATTTATCA
1 TTAACAAATTAAAAAATAATATTTAAGAAATTAAAAAAATTTATCA
*
2012314 TTATTCAAATTAAAAA
1 TTA-ACAAATTAAAAA
2012330 CCCTCTATTC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
45 18 0.34
46 24 0.45
47 11 0.21
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.36
Consensus pattern (46 bp):
TTAACAAATTAAAAAATAATATTTAAGAAATTAAAAAAATTTATCA
Found at i:2012637 original size:15 final size:16
Alignment explanation
Indices: 2012612--2012646 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
2012602 CTTATAATAA
2012612 AAAACTTTTTTAATTT
1 AAAACTTTTTTAATTT
*
2012628 AAAA-TTTTTTATTTT
1 AAAACTTTTTTAATTT
2012643 AAAA
1 AAAA
2012647 AACATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (16 bp):
AAAACTTTTTTAATTT
Found at i:2012743 original size:123 final size:122
Alignment explanation
Indices: 2012603--2012956 Score: 490
Period size: 123 Copynumber: 2.9 Consensus size: 122
2012593 AAAAATATTC
*
2012603 TTATAATAAAAAA-CTTTTTTAATTTAAAATTTTTTATTTTAAAAAACATAATAATTAATATTTT
1 TTATAATAAAAAACCTTTTTTATTTTAAAATTTTTT-TTTTAAAAAACATAATAATTAATATTTT
*
2012667 AATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAA
65 AATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTATTAAAAA
*
2012725 TTATAATAAAAAACCTTTTTTATTTTAAAATGTTTCTTTTTATAAAAACATAATAATTAATATTT
1 TTATAATAAAAAACCTTTTTTATTTTAAAAT-TTTTTTTTTA-AAAAACATAATAATTAATATTT
*
2012790 TAATTTGTTAATGT-AATTTTTTAAACTTAATTAAATATTA-TTTTAATTTATTAAAAA
64 TAATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTATTAAAAA
* * *
2012847 --ATAATAATAAACCCTTTTTATTTTTATTTAAATTTTTTTTATT-TAAAA-A-AATAATTAATA
1 TTATAATAAAAAACCTTTTTTA-TTTTA---AAATTTTTTTT-TTAAAAAACATAATAATTAATA
* *
2012907 TTTTAATTTGTTAATATAAGTTTTTTTAAAGTTAATTAAATATTATTTTT
61 TTTTAATTTGTTAATATAA-ATTTTTTAAACTTAATTAAATATTATTTTT
2012957 TATTAAAAAT
Statistics
Matches: 210, Mismatches: 11, Indels: 21
0.87 0.05 0.09
Matches are distributed among these distances:
120 45 0.21
121 7 0.03
122 56 0.27
123 57 0.27
124 45 0.21
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (122 bp):
TTATAATAAAAAACCTTTTTTATTTTAAAATTTTTTTTTTAAAAAACATAATAATTAATATTTTA
ATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTATTAAAAA
Found at i:2012795 original size:124 final size:122
Alignment explanation
Indices: 2012603--2012956 Score: 483
Period size: 122 Copynumber: 2.9 Consensus size: 122
2012593 AAAAATATTC
*
2012603 TTATAATAAAAAA-CTTTTTTAATTTAAAATTTTTTATTT-TAAAAAACATAATAATTAATATTT
1 TTATAATAAAAAACCTTTTTTATTTTAAAATTTTTT-TTTAT-AAAAACATAATAATTAATATTT
*
2012666 TAATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAA
64 TAATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTATTAAAAA
2012725 TTATAATAAAAAACCTTTTTTATTTTAAAATGTTTCTTTTTATAAAAACATAATAATTAATATTT
1 TTATAATAAAAAACCTTTTTTATTTTAAAAT-TTT-TTTTTATAAAAACATAATAATTAATATTT
*
2012790 TAATTTGTTAATGT-AATTTTTTAAACTTAATTAAATATTA-TTTTAATTTATTAAAAA
64 TAATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTATTAAAAA
* * *
2012847 --ATAATAATAAACCCTTTTTATTTTTATTTAAA-TTTTTTTTATTTAAAA-A-AATAATTAATA
1 TTATAATAAAAAACCTTTTTTA-TTTTA---AAATTTTTTTTTA-TAAAAACATAATAATTAATA
* *
2012907 TTTTAATTTGTTAATATAAGTTTTTTTAAAGTTAATTAAATATTATTTTT
61 TTTTAATTTGTTAATATAA-ATTTTTTAAACTTAATTAAATATTATTTTT
2012957 TATTAAAAAT
Statistics
Matches: 211, Mismatches: 9, Indels: 23
0.87 0.04 0.09
Matches are distributed among these distances:
120 45 0.21
121 13 0.06
122 60 0.28
123 46 0.22
124 44 0.21
125 3 0.01
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (122 bp):
TTATAATAAAAAACCTTTTTTATTTTAAAATTTTTTTTTATAAAAACATAATAATTAATATTTTA
ATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTATTAAAAA
Found at i:2013384 original size:39 final size:39
Alignment explanation
Indices: 2013335--2013415 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
2013325 TATTTATTAG
* *
2013335 AATTTAAAAAATATGATTAATATATAAAATTTT-TGTTTA
1 AATTCAAAAAATATGACTAATATAT-AAATTTTATGTTTA
* * *
2013374 AATTCAAAAAATATGACTGATATATGAATTTTATTTTTA
1 AATTCAAAAAATATGACTAATATATAAATTTTATGTTTA
2013413 AAT
1 AAT
2013416 AAATATAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
38 6 0.17
39 30 0.83
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.44
Consensus pattern (39 bp):
AATTCAAAAAATATGACTAATATATAAATTTTATGTTTA
Found at i:2013703 original size:35 final size:34
Alignment explanation
Indices: 2013655--2013721 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 34
2013645 TTCTTTTTTA
2013655 TAGAAAAAAAGAAAAGTTGATTGATTATAAATGT
1 TAGAAAAAAAGAAAAGTTGATTGATTATAAATGT
*
2013689 TAGAAAAAATAGAAAAGTTGATTGATTGTAAAT
1 TAGAAAAAA-AGAAAAGTTGATTGATTATAAAT
2013722 ATCATACTGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 9 0.29
35 22 0.71
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (34 bp):
TAGAAAAAAAGAAAAGTTGATTGATTATAAATGT
Found at i:2013790 original size:126 final size:125
Alignment explanation
Indices: 2013566--2013812 Score: 377
Period size: 126 Copynumber: 2.0 Consensus size: 125
2013556 CTTTTTTATG
* * ** * *
2013566 GAAAAAAAGAAAAGTTGATTGATTGTAAATGTCAAATTGTGAGGATTAGAGTAATACATGAATTA
1 GAAAAAAAGAAAAGTTGATTGATTGTAAATATCAAACTGCAAGAATTAGACTAATACATGAATTA
* * *
2013631 TATCTGAGAATCAATTCTTTTTTATAGAAAAAAAGAAAAGTTGATTGATTATAAATGTTA
66 TATCTAAGAATAAATTCTTTTTTATAGAAAAAAAGAAAAGTTGATTAATTATAAATGTTA
* *
2013691 GAAAAAATAGAAAAGTTGATTGATTGTAAATATCATACTGCAAGAATTAGACTAATGCATGAATT
1 GAAAAAA-AGAAAAGTTGATTGATTGTAAATATCAAACTGCAAGAATTAGACTAATACATGAATT
*
2013756 ATATCTAAGAATAAATTCTTTTTTATAGAAAAAAAGAAAAGTTGATTAATTGTAAAT
65 ATATCTAAGAATAAATTCTTTTTTATAGAAAAAAAGAAAAGTTGATTAATTATAAAT
2013813 ATCAGACTGT
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
125 7 0.06
126 102 0.94
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.33
Consensus pattern (125 bp):
GAAAAAAAGAAAAGTTGATTGATTGTAAATATCAAACTGCAAGAATTAGACTAATACATGAATTA
TATCTAAGAATAAATTCTTTTTTATAGAAAAAAAGAAAAGTTGATTAATTATAAATGTTA
Found at i:2013914 original size:92 final size:92
Alignment explanation
Indices: 2013689--2014127 Score: 611
Period size: 92 Copynumber: 4.8 Consensus size: 92
2013679 TTATAAATGT
* *
2013689 TAGAAAAAATAGAAAAGTTGATTGATTGTAAATATCATACTGCAAGAATTAGACTAATGCATGAA
1 TAGAAAAAA-AGAAAAGTTGATTGATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAA
* *
2013754 TTATATCTAAGAAT-AAATTCTTTTTTA
65 TTATATCTGAGAATCAGATTCTTTTTTA
* * *
2013781 TAGAAAAAAAGAAAAGTTGATTAATTGTAAATATCAGACTGTAAGGATTAGATTAATGCATGAAT
1 TAGAAAAAAAGAAAAGTTGATTGATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAAT
* *
2013846 TATATTTGAGAATCAGTTTCTTTTTTA
66 TATATCTGAGAATCAGATTCTTTTTTA
* * * *
2013873 TAGAAAAAAAGAAAAGTTGATTGATTGTAAATATAATACTGTAAGGATTAGATTAATGCATGAAT
1 TAGAAAAAAAGAAAAGTTGATTGATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAAT
* *
2013938 TATATTTGAGAATCAGTTTCTTTTTTA
66 TATATCTGAGAATCAGATTCTTTTTTA
* * * *
2013965 TAGAAAAAAAGAAAAGTTGATTGATTGTAAATGTCAAACTGCAAAGATTAGACTAATTCATGAAT
1 TAGAAAAAAAGAAAAGTTGATTGATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAAT
*
2014030 TATATCTGAGAATCGGATTCTTTTTTA
66 TATATCTGAGAATCAGATTCTTTTTTA
* * * *
2014057 T----AAAAA-AAAAGTTAACTGATTGTAAATGTCAGACTGCAAAGATTAGACTAATGCATGAAT
1 TAGAAAAAAAGAAAAGTTGATTGATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAAT
2014117 TATATCTGAGA
66 TATATCTGAGA
2014128 CGGTTTTAAA
Statistics
Matches: 320, Mismatches: 26, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
87 61 0.19
88 5 0.02
91 62 0.19
92 192 0.60
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.35
Consensus pattern (92 bp):
TAGAAAAAAAGAAAAGTTGATTGATTGTAAATATCAGACTGCAAGGATTAGACTAATGCATGAAT
TATATCTGAGAATCAGATTCTTTTTTA
Found at i:2014163 original size:55 final size:55
Alignment explanation
Indices: 2014079--2014182 Score: 181
Period size: 55 Copynumber: 1.9 Consensus size: 55
2014069 TAACTGATTG
*
2014079 TAAATGTCAGACTGCAAAGATTAGACTAATGCATGAATTATATCTGAGACGGTTT
1 TAAATGTCAGACTGCAAAGATTAGACTAATGCATAAATTATATCTGAGACGGTTT
* *
2014134 TAAATGTTAGACTGTAAAGATTAGACTAATGCATAAATTATATCTGAGA
1 TAAATGTCAGACTGCAAAGATTAGACTAATGCATAAATTATATCTGAGA
2014183 ATCGAATTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (55 bp):
TAAATGTCAGACTGCAAAGATTAGACTAATGCATAAATTATATCTGAGACGGTTT
Found at i:2014368 original size:69 final size:70
Alignment explanation
Indices: 2014235--2014376 Score: 189
Period size: 69 Copynumber: 2.0 Consensus size: 70
2014225 TGTAAATGTC
* * **
2014235 AAACAGCAAAGATTAGACTAATGTATGAATTATATCTAAGAATCAGATTTTTTTTAT-AGGAAAA
1 AAACAGCAAAGATTAGACTAATGCATGAATTATATCTAAGAATCAGATTTTTTTGATAAAAAAAA
2014299 AAGAA
66 AAGAA
* * * *
2014304 AAACTGCAAGGATTAGACTAATGCATGAATTATA-CATGAGAATCAGATTTTTTTGGTAAAAAAA
1 AAACAGCAAAGATTAGACTAATGCATGAATTATATC-TAAGAATCAGATTTTTTTGATAAAAAAA
2014368 AAAGAA
65 AAAGAA
2014374 AAA
1 AAA
2014377 TTAGTTGATT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
68 1 0.02
69 49 0.78
70 13 0.21
ACGTcount: A:0.49, C:0.08, G:0.15, T:0.28
Consensus pattern (70 bp):
AAACAGCAAAGATTAGACTAATGCATGAATTATATCTAAGAATCAGATTTTTTTGATAAAAAAAA
AAGAA
Found at i:2014442 original size:161 final size:162
Alignment explanation
Indices: 2014152--2014444 Score: 362
Period size: 161 Copynumber: 1.8 Consensus size: 162
2014142 AGACTGTAAA
* * *
2014152 GATTAGACTAATGCATAAATTATATCTGAGAATCGAATTCTTTTTTATAGAAAAAAAAGAAAGAC
1 GATTAGACTAATGCATAAATTATATCTGAGAATCGAATTCTTTTTGATAAAAAAAAAAGAAAAAC
* * * *
2014217 TGATTGATTGTAAATGTCAAACAGCAAAGATTAGACTAATGTATGAATTATATCTAAGAATCAGA
66 TGATTGATTATAAATATCAAACAGCAAAGATTAGACTAATGCATAAATTATATCTAAGAATCAGA
2014282 TTTTTTTTATAGGAAAAAAGAAAAACTGCAAG
131 TTTTTTTTATAGGAAAAAAGAAAAACTGCAAG
* *
2014314 GATTAGACTAATGCATGAATTATA-CATGAGAATC-AGATT-TTTTTGGTAAAAAAAAAAGAAAA
1 GATTAGACTAATGCATAAATTATATC-TGAGAATCGA-ATTCTTTTTGATAAAAAAAAAAGAAAA
* * * * * * * *
2014376 A-TTAGTTGATTATAAGTATGACACTGTAAAGATTAGACTGATGCATAAATTATATTTGAA-AAT
64 ACTGA-TTGATTATAAATATCAAACAGCAAAGATTAGACTAATGCATAAATTATATCT-AAGAAT
2014439 CAGATT
127 CAGATT
2014445 CATTTTAATA
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
160 2 0.02
161 72 0.65
162 36 0.33
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.32
Consensus pattern (162 bp):
GATTAGACTAATGCATAAATTATATCTGAGAATCGAATTCTTTTTGATAAAAAAAAAAGAAAAAC
TGATTGATTATAAATATCAAACAGCAAAGATTAGACTAATGCATAAATTATATCTAAGAATCAGA
TTTTTTTTATAGGAAAAAAGAAAAACTGCAAG
Found at i:2022389 original size:292 final size:286
Alignment explanation
Indices: 2021925--2022450 Score: 865
Period size: 292 Copynumber: 1.8 Consensus size: 286
2021915 TTTATTGTTA
* *
2021925 GCTATCATAAGTTTAAGTTCCATCAATTATAAAAATAATACACGTACAATATTAATTAATTTTAA
1 GCTAACATAAATTTAAGTTCCATCAATTATAAAAATAATACACGTACAATATTAATTAATTTTAA
* * *
2021990 AAAAATAAATTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAGTAATAATTCAT
66 AAAAATAAATTTGTATAATTCATAAACAAATTAAAAATAATTTATAAATAAAAGTAATAATACAT
*
2022055 GCACAATATTAATTAATTTTAATAAAAATAATATATGTACAATAAATTTTTTCTTGATCATTTTA
131 GCACAATATTAATTAATTTTAATAAAAATAATACATGTACAATAAATTTTTTCTTGATCATTTTA
* *
2022120 CAAATAAAAGAAAGCTCGTGTTCAAGTCGTTA-CTGAAAAATAAAATGGGTGCATCTGTAAATCC
196 C---TAAAA-AAAACTCGTATTCAAGTCGTTATC-GAAAAATAAAATGGGTGCATCTGTAAATCC
2022184 GAAATAAGTTGTTATAAAAAAAATATTATTG
256 GAAATAAGTTGTTATAAAAAAAATATTATTG
* *
2022215 GCTAACATAAATTTAAGTTCTATCAATTATAAAAATAATACATGTACAATATTAATTAATTTTAA
1 GCTAACATAAATTTAAGTTCCATCAATTATAAAAATAATACACGTACAATATTAATTAATTTTAA
2022280 TAAAAATAAATTTGTATAATTCATAAACAAATTAAAAATAATTTATAAATAAAAAGTAATAATAC
66 -AAAAATAAATTTGTATAATTCATAAACAAATTAAAAATAATTTATAAAT-AAAAGTAATAATAC
* *
2022345 ATGTACAATATTAATTAATTTTAATAAAAATAATACATGTACAATAAATTTTTTCTTGGTCATTT
129 ATGCACAATATTAATTAATTTTAATAAAAATAATACATGTACAATAAATTTTTTCTTGATCATTT
*
2022410 TACTAAAAAAAACTCGTATTTAAGTCGTTATCGAAAAATAA
194 TACTAAAAAAAACTCGTATTCAAGTCGTTATCGAAAAATAA
2022451 TATATGTAAA
Statistics
Matches: 220, Mismatches: 13, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
288 28 0.13
289 6 0.03
290 61 0.28
291 47 0.21
292 78 0.35
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.36
Consensus pattern (286 bp):
GCTAACATAAATTTAAGTTCCATCAATTATAAAAATAATACACGTACAATATTAATTAATTTTAA
AAAAATAAATTTGTATAATTCATAAACAAATTAAAAATAATTTATAAATAAAAGTAATAATACAT
GCACAATATTAATTAATTTTAATAAAAATAATACATGTACAATAAATTTTTTCTTGATCATTTTA
CTAAAAAAAACTCGTATTCAAGTCGTTATCGAAAAATAAAATGGGTGCATCTGTAAATCCGAAAT
AAGTTGTTATAAAAAAAATATTATTG
Found at i:2022768 original size:37 final size:39
Alignment explanation
Indices: 2022679--2022768 Score: 91
Period size: 37 Copynumber: 2.4 Consensus size: 39
2022669 TTATTAAATT
*
2022679 TTTTAATGTAATTAATTTTATTAAAAAAATATAATAAATCT
1 TTTTAAT-T-ATTAATTTTATTAAAAAAATATAATAAATCA
* *
2022720 TTTTAA-T-TTAATTTTATTTTAAAAAATA-AGT-AAT-A
1 TTTTAATTATTAATTTTA-TTAAAAAAATATAATAAATCA
2022755 TTTTAATTATTAAT
1 TTTTAATTATTAAT
2022769 GTAATTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
35 6 0.14
36 4 0.09
37 16 0.37
38 10 0.23
39 1 0.02
41 6 0.14
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (39 bp):
TTTTAATTATTAATTTTATTAAAAAAATATAATAAATCA
Found at i:2022964 original size:14 final size:14
Alignment explanation
Indices: 2022927--2022963 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
2022917 GTATTCAAAC
2022927 AAAATATATTT-TAA
1 AAAATAT-TTTATAA
2022941 AAAATATTTTATAA
1 AAAATATTTTATAA
2022955 AAAAT-TTTT
1 AAAATATTTT
2022964 TCACGAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AAAATATTTTATAA
Found at i:2023949 original size:4 final size:4
Alignment explanation
Indices: 2023942--2023967 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
2023932 TATTTTGGAT
2023942 TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TA
2023968 GAAGAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:2024251 original size:3 final size:3
Alignment explanation
Indices: 2024243--2024269 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2024233 ATTTTCTATG
2024243 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
2024270 CGTGTTCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:2028302 original size:28 final size:29
Alignment explanation
Indices: 2028263--2028323 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
2028253 TTTTTAAATT
**
2028263 AATTGTTGAGTTTATGTAAAAATTATAAA
1 AATTGTTGAGTTTACATAAAAATTATAAA
* *
2028292 AATTG-TGAGTTTACATAAAATTTATTAA
1 AATTGTTGAGTTTACATAAAAATTATAAA
2028320 AATT
1 AATT
2028324 TTTAATGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (29 bp):
AATTGTTGAGTTTACATAAAAATTATAAA
Found at i:2028369 original size:31 final size:32
Alignment explanation
Indices: 2028309--2028458 Score: 120
Period size: 31 Copynumber: 4.8 Consensus size: 32
2028299 AGTTTACATA
* *
2028309 AAATTTATTAAAATTTTTAATGATTTTTATGT
1 AAATTTATTAAAATTTTTAATAATTTTTATAT
*
2028341 AAATTTGTTAAAATTTTTAAT-ATTTTTATAT
1 AAATTTATTAAAATTTTTAATAATTTTTATAT
*
2028372 AAATTTTTTAATAA--TTTAATAATTTTTAT-T
1 AAATTTATTAA-AATTTTTAATAATTTTTATAT
* *
2028402 -AATTAAAATAATAATATTTTAATAATTTATT-T-T
1 AAATT-TATTAA-AAT-TTTTAATAATTT-TTATAT
* *
2028435 AAA-TTAATAATA-TTTTAATAATTT
1 AAATTTATTAAAATTTTTAATAATTT
2028459 ATTTTAAAAT
Statistics
Matches: 102, Mismatches: 8, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
29 16 0.16
30 13 0.13
31 28 0.27
32 27 0.26
33 14 0.14
34 4 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (32 bp):
AAATTTATTAAAATTTTTAATAATTTTTATAT
Found at i:2028427 original size:14 final size:13
Alignment explanation
Indices: 2028408--2028465 Score: 62
Period size: 13 Copynumber: 4.2 Consensus size: 13
2028398 TATTAATTAA
2028408 AATAATAATATTTT
1 AATAAT-ATATTTT
*
2028422 AATAATTTATTTT
1 AATAATATATTTT
2028435 AAATTAATAATATTTT
1 -AA-TAAT-ATATTTT
*
2028451 AATAATTTATTTT
1 AATAATATATTTT
2028464 AA
1 AA
2028466 AATTAATAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 14 0.37
14 12 0.32
15 6 0.16
16 6 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATAATATATTTT
Found at i:2028471 original size:30 final size:30
Alignment explanation
Indices: 2028380--2028483 Score: 131
Period size: 29 Copynumber: 3.4 Consensus size: 30
2028370 ATAAATTTTT
2028380 TAATAATTTAATAATTTTTATTAATTAAAA-TAA
1 TAATAATTTAATAA--TTTATT--TTAAAATTAA
*
2028413 TAATATTTTAATAATTTATTTT-AAATTAA
1 TAATAATTTAATAATTTATTTTAAAATTAA
*
2028442 TAATATTTTAATAATTTATTTTAAAATTAA
1 TAATAATTTAATAATTTATTTTAAAATTAA
*
2028472 TAGTAATTTAAT
1 TAATAATTTAAT
2028484 CAAGGTGTCA
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
28 3 0.05
29 27 0.41
30 17 0.26
31 6 0.09
33 13 0.20
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (30 bp):
TAATAATTTAATAATTTATTTTAAAATTAA
Found at i:2031944 original size:2 final size:2
Alignment explanation
Indices: 2031937--2031970 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2031927 GAGAAAGAGA
2031937 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2031971 GTATGTATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2032824 original size:9 final size:9
Alignment explanation
Indices: 2032802--2032833 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
2032792 ATGGTACTAC
2032802 TATTCTTCAT
1 TATTCTT-AT
2032812 TATTCTTAT
1 TATTCTTAT
2032821 TATTCTTAT
1 TATTCTTAT
2032830 TATT
1 TATT
2032834 AATATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.66
Consensus pattern (9 bp):
TATTCTTAT
Found at i:2037355 original size:17 final size:17
Alignment explanation
Indices: 2037333--2037367 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
2037323 AACTCGAAGG
2037333 TTATAATGATATAATCT
1 TTATAATGATATAATCT
*
2037350 TTATAATTATATAATCT
1 TTATAATGATATAATCT
2037367 T
1 T
2037368 GATGCTGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (17 bp):
TTATAATGATATAATCT
Found at i:2038321 original size:5 final size:5
Alignment explanation
Indices: 2038311--2038339 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
2038301 TTCAAAATTT
2038311 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
2038340 GATCTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:2045836 original size:2 final size:2
Alignment explanation
Indices: 2045829--2045857 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2045819 TAAAGATTAC
2045829 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2045858 GCTAATTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2048034 original size:15 final size:17
Alignment explanation
Indices: 2048014--2048046 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2048004 TTTTTTCATC
2048014 ATTTTT-ATT-CAAAAT
1 ATTTTTAATTACAAAAT
2048029 ATTTTTAATTACAAAAT
1 ATTTTTAATTACAAAAT
2048046 A
1 A
2048047 ATAAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTTTAATTACAAAAT
Found at i:2049031 original size:2 final size:2
Alignment explanation
Indices: 2049024--2049048 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2049014 TTGCTTGTTT
2049024 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2049049 CATTTTACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2053421 original size:12 final size:12
Alignment explanation
Indices: 2053404--2053428 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2053394 ATTTTGTTGG
2053404 ATTTTAATTTTT
1 ATTTTAATTTTT
2053416 ATTTTAATTTTT
1 ATTTTAATTTTT
2053428 A
1 A
2053429 AAAAAAGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
ATTTTAATTTTT
Found at i:2053466 original size:20 final size:19
Alignment explanation
Indices: 2053443--2053492 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
2053433 AAGAGATAAG
2053443 GAAAAGAAAATAAAACAAAT
1 GAAAAGAAAATAAAA-AAAT
*
2053463 GAAAAAGAAAATAAAAAATT
1 G-AAAAGAAAATAAAAAAAT
*
2053483 GAAAATAAAA
1 GAAAAGAAAA
2053493 CAAATCATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 8 0.30
20 5 0.19
21 14 0.52
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (19 bp):
GAAAAGAAAATAAAAAAAT
Found at i:2053468 original size:21 final size:20
Alignment explanation
Indices: 2053444--2053487 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
2053434 AGAGATAAGG
2053444 AAAAGAAAATAAAACAAATGA
1 AAAAGAAAATAAAA-AAATGA
*
2053465 AAAAGAAAATAAAAAATTGA
1 AAAAGAAAATAAAAAAATGA
2053485 AAA
1 AAA
2053488 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.11
Consensus pattern (20 bp):
AAAAGAAAATAAAAAAATGA
Found at i:2054330 original size:2 final size:2
Alignment explanation
Indices: 2054323--2054352 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2054313 ACGATATTTG
2054323 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2054353 CTTATACGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2057566 original size:2 final size:2
Alignment explanation
Indices: 2057559--2057583 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2057549 TCCAAAAATA
2057559 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2057584 GTGATATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.