Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold168
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2098754
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
File 2 of 16
Found at i:130862 original size:21 final size:20
Alignment explanation
Indices: 130812--130864 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
130802 TTATATATTT
*
130812 AATAA-TATAAAT-ATAAAA
1 AATAATTATTAATAATAAAA
* *
130830 AATATTTTTTAATAATAAAA
1 AATAATTATTAATAATAAAA
130850 ATATAATTATTAATA
1 A-ATAATTATTAATA
130865 TCTTAAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
18 4 0.15
19 5 0.19
20 7 0.26
21 11 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAATTATTAATAATAAAA
Found at i:130930 original size:12 final size:13
Alignment explanation
Indices: 130905--130954 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
130895 AAATTATAAA
130905 TTTAATATATTAT
1 TTTAATATATTAT
*
130918 TTTACTATA-TATT
1 TTTAATATATTA-T
**
130931 TTTAA-ATAAAAT
1 TTTAATATATTAT
130943 TTTAATATATTA
1 TTTAATATATTA
130955 AAAATGTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
12 11 0.38
13 18 0.62
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTAATATATTAT
Found at i:131015 original size:11 final size:11
Alignment explanation
Indices: 130945--131020 Score: 55
Period size: 11 Copynumber: 6.6 Consensus size: 11
130935 AATAAAATTT
130945 TAATATATTAA
1 TAATATATTAA
* * *
130956 AAATGTATAAA
1 TAATATATTAA
*
130967 TAATATATAATA
1 TAATATATTA-A
130979 TAATA-ATTAAA
1 TAATATATT-AA
* *
130990 TATTTAAATTTAA
1 TA-ATATA-TTAA
131003 TAATATATTAA
1 TAATATATTAA
131014 TAATATA
1 TAATATA
131021 ATATTTAATT
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
11 32 0.63
12 12 0.24
13 5 0.10
14 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (11 bp):
TAATATATTAA
Found at i:132019 original size:14 final size:15
Alignment explanation
Indices: 132000--132041 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
131990 ATAATTTTAT
132000 TATTTTTT-AAATTA
1 TATTTTTTAAAATTA
132014 TATTTTTTTAAAATTA
1 TA-TTTTTTAAAATTA
*
132030 -ATTTTTAAAAAT
1 TATTTTTTAAAAT
132042 ATGCTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 12 0.48
15 7 0.28
16 6 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTTTTTAAAATTA
Found at i:132020 original size:15 final size:15
Alignment explanation
Indices: 132002--132035 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
131992 AATTTTATTA
132002 TTTTTT-AAATTATAT
1 TTTTTTAAAATTA-AT
132017 TTTTTTAAAATTAAT
1 TTTTTTAAAATTAAT
132032 TTTT
1 TTTT
132036 AAAAATATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTTAAAATTAAT
Found at i:132027 original size:16 final size:16
Alignment explanation
Indices: 131992--132035 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
131982 AAATAATAAT
* *
131992 AATTTTATTATTTTTTA
1 AATTATATT-TTTTTAA
132009 AATTATATTTTTTTAA
1 AATTATATTTTTTTAA
132025 AATTA-ATTTTT
1 AATTATATTTTT
132036 AAAAATATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 6 0.24
16 11 0.44
17 8 0.32
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
AATTATATTTTTTTAA
Found at i:132197 original size:26 final size:27
Alignment explanation
Indices: 132146--132197 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
132136 AATTATTTTT
132146 TATAATTTATTTAAATAAATTAAAAAA
1 TATAATTTATTTAAATAAATTAAAAAA
** *
132173 TATAATTT-TTTTTATACATTAAAAA
1 TATAATTTATTTAAATAAATTAAAAA
132198 TTTAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
TATAATTTATTTAAATAAATTAAAAAA
Found at i:132314 original size:2 final size:2
Alignment explanation
Indices: 132307--132363 Score: 68
Period size: 2 Copynumber: 30.0 Consensus size: 2
132297 AATTATATGC
*
132307 TA TA TA TA TA TA TA -A TA -A TT TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
132346 GTA TA TA TA TA -A TA TA TA
1 -TA TA TA TA TA TA TA TA TA
132364 ACATATAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
1 4 0.08
2 42 0.88
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:132370 original size:9 final size:9
Alignment explanation
Indices: 132307--132363 Score: 57
Period size: 9 Copynumber: 6.4 Consensus size: 9
132297 AATTATATGC
132307 TATAT-ATA
1 TATATAATA
132315 TATATAATA
1 TATATAATA
*
132324 -ATTTATATA
1 TATATA-ATA
*
132333 TATATATTA
1 TATATAATA
132342 TATAGT-ATA
1 TATA-TAATA
132351 TATATAATA
1 TATATAATA
132360 TATA
1 TATA
132364 ACATATAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
8 10 0.25
9 25 0.62
10 5 0.12
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (9 bp):
TATATAATA
Found at i:132370 original size:20 final size:18
Alignment explanation
Indices: 132310--132370 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
132300 TATATGCTAT
*
132310 ATATATATATAATA-ATTT
1 ATATATATATAATATA-TA
*
132328 ATATATATATATTATATA
1 ATATATATATAATATATA
*
132346 GTATATATATAATATATA
1 ATATATATATAATATATA
*
132364 ACATATA
1 ATATATA
132371 ATATTTTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
18 35 0.97
19 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
ATATATATATAATATATA
Found at i:132542 original size:89 final size:88
Alignment explanation
Indices: 132487--133185 Score: 776
Period size: 89 Copynumber: 7.9 Consensus size: 88
132477 ATATAAAATA
** * * * * *
132487 AAATTT-TTGAAATTCGAAAGATGTGATAGATGCATGTGAGTATCAGATTCCTTCTGAAACGATA
1 AAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGACA
* *
132551 TAAAATATTTGACTAATGCCTAAT
66 GAAAATATTTGACTAAT-CTTAAT
* * * ** * * *
132575 AAATTT-TTTAGAACTCGAAAGATATGACAGATATATGCGAGTATCAAATTCCTTCTGACATGAC
1 AAATTTCTTGA-AACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGAC
132639 AGAAAATATTTGACTAATGCTTAAT
65 AGAAAATATTTGACTAAT-CTTAAT
* * * *
132664 AAATTTCTTGGAACCCGAAAGATGTGACAGATGCATACGGGTATCAGATTCTTTCTGACATGACA
1 AAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGACA
*
132729 AAAAATATTTGACTAATGCTTAAT
66 GAAAATATTTGACTAAT-CTTAAT
* * * * * *
132753 AAATTTCTTGAAACCCGAAATATGTGACAGATGCATGCGGGTATCAGATTTCTTCTAATATGATA
1 AAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGACA
*
132818 GAAAATATTTTACTAATGCTTAAT
66 GAAAATATTTGACTAAT-CTTAAT
* * * * * * *
132842 AAATTTTTTGGAATCCGAAAGATGTTGATAGATGCATACGGGTATCAGATTCCTTTTGATACGAC
1 AAATTTCTTGAAACCCGAAAGATG-TGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGA-
* *
132907 CA-AAAATATTTGACTAATATAAAAT
64 CAGAAAATATTTGACTAATCT-TAAT
* * * * *
132932 AAAATTT-TTGGAACCTGAAATATATGACAGATGCATGCGGGTATCAGATTCCTTCTAACACGAC
1 -AAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGAC
* *
132996 AGAAAATATTTGATTAATGCCTAAT
65 AGAAAATATTTGACTAAT-CTTAAT
* * * * *
133021 AAATTTCTTGGAACCTGAAAGATGTGATAGATGCATGCGGGTATAAGATTCATTCTGACACGACA
1 AAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGACA
*
133086 GAAAATATTTGAGTAATGCTTAAT
66 GAAAATATTTGACTAAT-CTTAAT
** *
133110 AAATTTCTTGAAACTTGAAAGATGTGATAGATGCATGCGGGTATCAGATTCCTTCTGACACGACA
1 AAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGACA
*
133175 AAAAATATTTG
66 GAAAATATTTG
133186 TTACTATGAA
Statistics
Matches: 528, Mismatches: 74, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
88 17 0.03
89 438 0.83
90 66 0.12
91 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (88 bp):
AAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTCTGACACGACA
GAAAATATTTGACTAATCTTAAT
Found at i:132699 original size:178 final size:177
Alignment explanation
Indices: 132501--133185 Score: 865
Period size: 178 Copynumber: 3.8 Consensus size: 177
132491 TTTTGAAATT
** * * *
132501 CGAAAGATGTGATAGATGCATGTGAGTATCAGATTCCTTCTGAAACGATATAAAATATTTGACTA
1 CGAAAGATGTGATAGATGCATACGGGTATCAGATTCCTTCTGACACGACA-AAAATATTTGACTA
* * ** * *
132566 ATGCCTAATAAATTT-TTTAGAACTCGAAAGATATGACAGATATATGCGAGTATCAAATTCCTTC
65 ATGCTTAATAAATTTCTTGA-AACTCGAAAGATATGACAGATGCATGCGGGTATCAGATTCCTTC
* *
132630 TGACATGACAGAAAATATTTGACTAATGCTTAATAAATTTCTTGGAACC
129 TAACACGACAGAAAATATTTGACTAATGCTTAATAAATTTCTTGGAACC
* * *
132679 CGAAAGATGTGACAGATGCATACGGGTATCAGATTCTTTCTGACATGACAAAAAATATTTGACTA
1 CGAAAGATGTGATAGATGCATACGGGTATCAGATTCCTTCTGACACGAC-AAAAATATTTGACTA
* * * *
132744 ATGCTTAATAAATTTCTTGAAACCCGAAATATGTGACAGATGCATGCGGGTATCAGATTTCTTCT
65 ATGCTTAATAAATTTCTTGAAACTCGAAAGATATGACAGATGCATGCGGGTATCAGATTCCTTCT
* * * * * *
132809 AATATGATAGAAAATATTTTACTAATGCTTAATAAATTTTTTGGAATC
130 AACACGACAGAAAATATTTGACTAATGCTTAATAAATTTCTTGGAACC
* *
132857 CGAAAGATGTTGATAGATGCATACGGGTATCAGATTCCTTTTGATACGACCAAAAATATTTGACT
1 CGAAAGATG-TGATAGATGCATACGGGTATCAGATTCCTTCTGACACGA-CAAAAATATTTGACT
* * * *
132922 AAT-ATAAAATAAAATTT-TTGGAAC-CTGAAATATATGACAGATGCATGCGGGTATCAGATTCC
64 AATGCT-TAAT-AAATTTCTTGAAACTC-GAAAGATATGACAGATGCATGCGGGTATCAGATTCC
* *
132984 TTCTAACACGACAGAAAATATTTGATTAATGCCTAATAAATTTCTTGGAACC
126 TTCTAACACGACAGAAAATATTTGACTAATGCTTAATAAATTTCTTGGAACC
* * * * *
133036 TGAAAGATGTGATAGATGCATGCGGGTATAAGATTCATTCTGACACGACAGAAAATATTTGAGTA
1 CGAAAGATGTGATAGATGCATACGGGTATCAGATTCCTTCTGACACGACA-AAAATATTTGACTA
* * *
133101 ATGCTTAATAAATTTCTTGAAACTTGAAAGATGTGATAGATGCATGCGGGTATCAGATTCCTTCT
65 ATGCTTAATAAATTTCTTGAAACTCGAAAGATATGACAGATGCATGCGGGTATCAGATTCCTTCT
* *
133166 GACACGACAAAAAATATTTG
130 AACACGACAGAAAATATTTG
133186 TTACTATGAA
Statistics
Matches: 438, Mismatches: 58, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
177 8 0.02
178 272 0.62
179 151 0.34
180 7 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (177 bp):
CGAAAGATGTGATAGATGCATACGGGTATCAGATTCCTTCTGACACGACAAAAATATTTGACTAA
TGCTTAATAAATTTCTTGAAACTCGAAAGATATGACAGATGCATGCGGGTATCAGATTCCTTCTA
ACACGACAGAAAATATTTGACTAATGCTTAATAAATTTCTTGGAACC
Found at i:133182 original size:357 final size:356
Alignment explanation
Indices: 132483--133184 Score: 985
Period size: 357 Copynumber: 2.0 Consensus size: 356
132473 GTTAATATAA
* **
132483 AATAAAATTTTTGAAATTCGAAAGATGTGATAGATGCATGTGAGTATCAGATTCCTTCTGAAACG
1 AATAAAATTTTTGAAATCCGAAAGATGTGATAGATGCATACGAGTATCAGATTCCTTCTGAAACG
* * ** * *
132548 ATATAAAATATTTGACTAATGCCTAATAAATTTTTTAGAACTCGAAAGATATGACAGATATATGC
66 ACATAAAATATTTGACTAATACAAAATAAAATTTTTAGAACTCGAAAGATATGACAGATACATGC
* * *
132613 GAGTATCAAATTCCTTCTGACATGACAGAAAATATTTGACTAATGCTTAATAAATTTCTTGGAAC
131 GAGTATCAAATTCCTTCTAACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAAC
* * *
132678 CCGAAAGATGTGACAGATGCATACGGGTATCAGATTCTTTCTGACATGACAAAAAATATTTGACT
196 CCGAAAGATGTGACAGATGCATACGGGTATAAGATTCATTCTGACACGACAAAAAATATTTGACT
* *
132743 AATGCTTAATAAATTTCTTGAAACCCGAAATATGTGACAGATGCATGCGGGTATCAGATTTCTTC
261 AATGCTTAATAAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTC
* * * *
132808 TAATATGATAGAAAATATTTTACTAATGCTT
326 TAACACGACAAAAAATATTTTACTAATGCTT
* * * * *
132839 AATAAATTTTTTGGAATCCGAAAGATGTTGATAGATGCATACGGGTATCAGATTCCTTTTGATAC
1 AATAAAATTTTTGAAATCCGAAAGATG-TGATAGATGCATACGAGTATCAGATTCCTTCTGAAAC
* * * *
132904 GACCA-AAAATATTTGACTAATATAAAATAAAATTTTTGGAAC-CTGAAATATATGACAGATGCA
65 GA-CATAAAATATTTGACTAATACAAAATAAAATTTTTAGAACTC-GAAAGATATGACAGATACA
* * *
132967 TGCGGGTATCAGATTCCTTCTAACACGACAGAAAATATTTGATTAATGCCTAATAAATTTCTTGG
128 TGCGAGTATCAAATTCCTTCTAACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGG
* * * *
133032 AACCTGAAAGATGTGATAGATGCATGCGGGTATAAGATTCATTCTGACACGACAGAAAATATTTG
193 AACCCGAAAGATGTGACAGATGCATACGGGTATAAGATTCATTCTGACACGACAAAAAATATTTG
* ** *
133097 AGTAATGCTTAATAAATTTCTTGAAACTTGAAAGATGTGATAGATGCATGCGGGTATCAGATTCC
258 ACTAATGCTTAATAAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCC
*
133162 TTCTGACACGACAAAAAATATTT
323 TTCTAACACGACAAAAAATATTT
133185 GTTACTATGA
Statistics
Matches: 301, Mismatches: 42, Indels: 5
0.86 0.12 0.01
Matches are distributed among these distances:
356 25 0.08
357 275 0.91
358 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (356 bp):
AATAAAATTTTTGAAATCCGAAAGATGTGATAGATGCATACGAGTATCAGATTCCTTCTGAAACG
ACATAAAATATTTGACTAATACAAAATAAAATTTTTAGAACTCGAAAGATATGACAGATACATGC
GAGTATCAAATTCCTTCTAACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAAC
CCGAAAGATGTGACAGATGCATACGGGTATAAGATTCATTCTGACACGACAAAAAATATTTGACT
AATGCTTAATAAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGGTATCAGATTCCTTC
TAACACGACAAAAAATATTTTACTAATGCTT
Found at i:134453 original size:7 final size:7
Alignment explanation
Indices: 134439--134628 Score: 90
Period size: 7 Copynumber: 26.4 Consensus size: 7
134429 AAATAAAAAA
134439 ATATTAT
1 ATATTAT
134446 ATGA-TAT
1 AT-ATTAT
134453 ATATTAT
1 ATATTAT
*
134460 GTATATATT
1 ATAT-TA-T
134469 ATATTAT
1 ATATTAT
134476 AT-TTAT
1 ATATTAT
134482 ATA-TAT
1 ATATTAT
*
134488 ACTA-TGT
1 A-TATTAT
134495 ATATTATT
1 ATATTA-T
134503 ATATTAT
1 ATATTAT
134510 ATATTAT
1 ATATTAT
*
134517 ATATTCTT
1 ATATT-AT
134525 ATATTAT
1 ATATTAT
134532 -TATATAT
1 ATAT-TAT
*
134539 ATAGTTGCT
1 ATA-TT-AT
134548 -TA-TAT
1 ATATTAT
134553 ATATT-T
1 ATATTAT
*
134559 ATATTAAG
1 ATATT-AT
*
134567 ATAATAT
1 ATATTAT
*
134574 ATATAAT
1 ATATTAT
* *
134581 ATATAAC
1 ATATTAT
*
134588 ATAATAT
1 ATATTAT
134595 ATATATAT
1 ATAT-TAT
*
134603 AATATACAT
1 -ATAT-TAT
*
134612 ATAATAT
1 ATATTAT
*
134619 ATATAAT
1 ATATTAT
134626 ATA
1 ATA
134629 AAAAAAATTT
Statistics
Matches: 141, Mismatches: 23, Indels: 38
0.70 0.11 0.19
Matches are distributed among these distances:
5 1 0.01
6 25 0.18
7 69 0.49
8 33 0.23
9 13 0.09
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (7 bp):
ATATTAT
Found at i:134454 original size:2 final size:2
Alignment explanation
Indices: 134439--134628 Score: 102
Period size: 2 Copynumber: 104.5 Consensus size: 2
134429 AAATAAAAAA
*
134439 AT AT -T AT AT GAT AT AT AT -T AT GT AT AT AT -T AT AT -T AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
134478 TT AT AT AT AT ACT AT GT AT AT -T AT -T AT AT -T AT AT AT -T AT
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
134517 AT AT -T CT -T AT AT -T AT -T AT AT AT AT AGT -T GCT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT -AT AT AT AT AT
* * *
134555 AT TT AT AT -T A- AG AT A- AT AT AT AT A- AT AT AT A- AC AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
134591 AT AT AT AT AT AT A- AT AT AC AT AT A- AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
134629 AAAAAAATTT
Statistics
Matches: 149, Mismatches: 12, Indels: 54
0.69 0.06 0.25
Matches are distributed among these distances:
1 23 0.15
2 120 0.81
3 6 0.04
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:134531 original size:5 final size:5
Alignment explanation
Indices: 134439--134511 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
134429 AAATAAAAAA
* *
134439 ATATT ATATG ATA-T ATATT ATGTAT ATATT ATATT ATATTT ATATAT
1 ATATT ATATT ATATT ATATT ATAT-T ATATT ATATT ATA-TT ATAT-T
* *
134486 ATACT ATGTAT ATTATT ATATT ATAT
1 ATATT ATAT-T A-TATT ATATT ATAT
134512 ATTATATATT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
4 3 0.06
5 32 0.59
6 17 0.31
7 2 0.04
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:134562 original size:64 final size:64
Alignment explanation
Indices: 134439--134584 Score: 156
Period size: 64 Copynumber: 2.3 Consensus size: 64
134429 AAATAAAAAA
* **
134439 ATATTATATGA-TATATATTATGTATATATTATATTATATTTATATATATACTATGTATATTATT
1 ATATTATAT-ATTATATATTATGTATATATTATATTATATTGATATATATACTATGTATATTAAG
* * *
134503 ATATTATATATTATATATTCT-TATATTATTATATATATAGTTGCT-TATATA-TATTTATATTA
1 ATATTATATATTATATATTATGTATA-TATTATAT-TATA-TTGATATATATACTATGTATATTA
134565 AG
63 AG
* *
134567 ATAATATATATAATATAT
1 ATATTATATATTATATAT
134585 AACATAATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
63 5 0.07
64 52 0.74
65 10 0.14
66 3 0.04
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (64 bp):
ATATTATATATTATATATTATGTATATATTATATTATATTGATATATATACTATGTATATTAAG
Found at i:134581 original size:9 final size:9
Alignment explanation
Indices: 134567--134628 Score: 76
Period size: 9 Copynumber: 6.9 Consensus size: 9
134557 TTATATTAAG
134567 ATAATATAT
1 ATAATATAT
134576 ATAATATAT
1 ATAATATAT
134585 A-ACATA-AT
1 ATA-ATATAT
134593 AT-ATATAT
1 ATAATATAT
134601 ATAATATACAT
1 ATAATAT--AT
134612 ATAATATAT
1 ATAATATAT
134621 ATAATATA
1 ATAATATA
134629 AAAAAAATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
7 3 0.06
8 8 0.17
9 27 0.57
11 9 0.19
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (9 bp):
ATAATATAT
Found at i:134584 original size:11 final size:11
Alignment explanation
Indices: 134570--134623 Score: 63
Period size: 11 Copynumber: 4.6 Consensus size: 11
134560 TATTAAGATA
134570 ATATATATAAT
1 ATATATATAAT
*
134581 ATATAACATAATAT
1 ATAT-ATAT-A-AT
134595 ATATATATAAT
1 ATATATATAAT
*
134606 ATACATATAAT
1 ATATATATAAT
134617 ATATATA
1 ATATATA
134624 ATATAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 22 0.61
12 4 0.11
13 4 0.11
14 6 0.17
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (11 bp):
ATATATATAAT
Found at i:135086 original size:17 final size:16
Alignment explanation
Indices: 135065--135114 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
135055 CAAATATATA
135065 TTTAAATTATTATTTT
1 TTTAAATTATTATTTT
* *
135081 TATTAAATAATTAATTT
1 T-TTAAATTATTATTTT
*
135098 TTTAAAATATTTATTTT
1 TTTAAATTA-TTATTTT
135115 AAAATATTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 7 0.26
17 20 0.74
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAAATTATTATTTT
Found at i:135130 original size:15 final size:14
Alignment explanation
Indices: 135098--135131 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
135088 TAATTAATTT
*
135098 TTTAAAATATTTAT
1 TTTAAAATATTTAA
135112 TTTAAAATATTATAA
1 TTTAAAATATT-TAA
135127 TTTAA
1 TTTAA
135132 GTATTTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTAAAATATTTAA
Found at i:135905 original size:8 final size:8
Alignment explanation
Indices: 135894--135945 Score: 61
Period size: 8 Copynumber: 6.2 Consensus size: 8
135884 TCAAAAATTA
135894 AAAATAAT
1 AAAATAAT
135902 AAAATAAT
1 AAAATAAT
135910 AAAAATTAAT
1 -AAAA-TAAT
135920 AAAATAAT
1 AAAATAAT
135928 AATAATAA-
1 AA-AATAAT
*
135936 AAAAAAAT
1 AAAATAAT
135944 AA
1 AA
135946 TTAAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
7 4 0.10
8 18 0.46
9 13 0.33
10 4 0.10
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAATAAT
Found at i:135913 original size:24 final size:24
Alignment explanation
Indices: 135886--135938 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
135876 ATTAGAAATC
135886 AAAAATTAAAAATAATAA-AATAAT
1 AAAAATTAAAAA-AATAATAATAAT
*
135910 AAAAATTAATAAAATAATAATAAT
1 AAAAATTAAAAAAATAATAATAAT
135934 AAAAA
1 AAAAA
135939 AAAATAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (24 bp):
AAAAATTAAAAAAATAATAATAAT
Found at i:135919 original size:18 final size:18
Alignment explanation
Indices: 135892--135952 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
135882 AATCAAAAAT
135892 TAAAAA-TAATAAAATAA
1 TAAAAATTAATAAAATAA
135909 TAAAAATTAATAAAATAA
1 TAAAAATTAATAAAATAA
* * *
135927 TAATAATAAAAAAAAATAA
1 TAAAAAT-TAATAAAATAA
135946 TTAAAAA
1 -TAAAAA
135953 AAATCATGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 6 0.16
18 17 0.46
19 9 0.24
20 5 0.14
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
TAAAAATTAATAAAATAA
Found at i:135922 original size:27 final size:29
Alignment explanation
Indices: 135867--135952 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 29
135857 GATATAAACT
**
135867 ATAATAATAATTAGAAATCAAA-AATTAAAA
1 ATAATAATAA-TA-AAAAAAAATAATTAAAA
* *
135897 ATAATAA-AATAATAAAAATTAA-T-AAA
1 ATAATAATAATAAAAAAAAATAATTAAAA
135923 ATAATAATAATAAAAAAAAATAATTAAAA
1 ATAATAATAATAAAAAAAAATAATTAAAA
135952 A
1 A
135953 AAATCATGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
26 10 0.22
27 18 0.39
28 5 0.11
29 6 0.13
30 7 0.15
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.26
Consensus pattern (29 bp):
ATAATAATAATAAAAAAAAATAATTAAAA
Found at i:135944 original size:24 final size:24
Alignment explanation
Indices: 135867--135945 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 24
135857 GATATAAACT
135867 ATAATAATAATTAGAAATCAAAAATTAAAA
1 ATAATAATAA-TA-AAA--AAAAA-T-AAA
135897 ATAATAA-AATAATAAAAATTAATAAA
1 ATAATAATAATAA-AAAAA--AATAAA
135923 ATAATAATAATAAAAAAAAATAA
1 ATAATAATAATAAAAAAAAATAA
135946 TTAAAAAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
24 5 0.11
26 18 0.40
27 7 0.16
28 6 0.13
29 2 0.04
30 7 0.16
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (24 bp):
ATAATAATAATAAAAAAAAATAAA
Found at i:135946 original size:13 final size:13
Alignment explanation
Indices: 135904--135956 Score: 61
Period size: 13 Copynumber: 4.0 Consensus size: 13
135894 AAAATAATAA
* *
135904 AATAATAAAAATT
1 AATAAAAAAAAAT
*
135917 AATAAAATAATAAT
1 AATAAAA-AAAAAT
135931 AATAAAAAAAAAT
1 AATAAAAAAAAAT
*
135944 AATTAAAAAAAAT
1 AATAAAAAAAAAT
135957 CATGAAATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
13 23 0.68
14 11 0.32
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (13 bp):
AATAAAAAAAAAT
Found at i:135952 original size:14 final size:14
Alignment explanation
Indices: 135893--135955 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
135883 ATCAAAAATT
135893 AAAAATAA-TAAAA
1 AAAAATAATTAAAA
135906 TAATAAA-AATTAATAA
1 -AA-AAATAATTAA-AA
*
135922 AATAATAATAATAAAA
1 AAAAATAAT--TAAAA
135938 AAAAATAATTAAAA
1 AAAAATAATTAAAA
135952 AAAA
1 AAAA
135956 TCATGAAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
14 15 0.37
15 11 0.27
16 12 0.29
17 3 0.07
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAATAATTAAAA
Found at i:136415 original size:37 final size:37
Alignment explanation
Indices: 136355--136431 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
136345 ACTCAAAGGG
* *
136355 AAAAATAACTTCTAGCAGCCTCCAATCCACGA-TAAA
1 AAAAATAACTTCCAGCAACCTCCAATCCACGACTAAA
*
136391 AAAAATCAGCTTCCAGCAACCTCCAATCCACGACTAAA
1 AAAAAT-AACTTCCAGCAACCTCCAATCCACGACTAAA
136429 AAA
1 AAA
136432 CTCCAGCAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 6 0.17
37 23 0.64
38 7 0.19
ACGTcount: A:0.45, C:0.30, G:0.08, T:0.17
Consensus pattern (37 bp):
AAAAATAACTTCCAGCAACCTCCAATCCACGACTAAA
Found at i:136471 original size:28 final size:28
Alignment explanation
Indices: 136440--136495 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
136430 AACTCCAGCA
*
136440 AGCAGCAGGAGTATCCGAAACCAACACT
1 AGCAGCAGGAGCATCCGAAACCAACACT
*
136468 AGCAGCAGGAGCATTCGAAACCAACACT
1 AGCAGCAGGAGCATCCGAAACCAACACT
136496 GACAGTAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.29, G:0.21, T:0.11
Consensus pattern (28 bp):
AGCAGCAGGAGCATCCGAAACCAACACT
Found at i:136676 original size:61 final size:61
Alignment explanation
Indices: 136595--136841 Score: 377
Period size: 61 Copynumber: 4.0 Consensus size: 61
136585 CAAAAATTTC
* * * * *
136595 AGCACGAACAACAGCCAAACAACAGCACGGCAGCAACAACAGAAGCTCCAACAAGCAGGCA
1 AGCACGAACAGCAACGAAACAACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGGCA
*
136656 AGCACGAACAGCAACGAAACAACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGACA
1 AGCACGAACAGCAACGAAACAACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGGCA
* * *
136717 AGCACGAACAGCAAACGAAACAATAGCACGGCAGCAGCAACAGCAGCTCCAACAAGCAGGCA
1 AGCACGAACAGC-AACGAAACAACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGGCA
* * *
136779 AGCATGAACAGCAATGAAACAACAGCACGACAGCAACAACAGCGGCTCCAACAAGCAGGCA
1 AGCACGAACAGCAACGAAACAACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGGCA
136840 AG
1 AG
136842 TACAAAAAAT
Statistics
Matches: 169, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
61 113 0.67
62 56 0.33
ACGTcount: A:0.45, C:0.31, G:0.21, T:0.03
Consensus pattern (61 bp):
AGCACGAACAGCAACGAAACAACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGGCA
Found at i:136749 original size:123 final size:123
Alignment explanation
Indices: 136611--136841 Score: 399
Period size: 123 Copynumber: 1.9 Consensus size: 123
136601 AACAACAGCC
136611 AAACAACAGCACGGCAGCAACAACAGAAGCTCCAACAAGCAGGCAAGCACGAACAGCAACGAAAC
1 AAACAACAGCACGGCAGCAACAACAGAAGCTCCAACAAGCAGGCAAGCACGAACAGCAACGAAAC
136676 AACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGACAAGCACGAACAGCAAACG
66 AACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGACAAGCACGAACAGCAAACG
* * * * *
136734 AAACAATAGCACGGCAGCAGCAACAGCAGCTCCAACAAGCAGGCAAGCATGAACAGCAATGAAAC
1 AAACAACAGCACGGCAGCAACAACAGAAGCTCCAACAAGCAGGCAAGCACGAACAGCAACGAAAC
* *
136799 AACAGCACGACAGCAACAACAGCGGCTCCAACAAGCAGGCAAG
66 AACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGACAAG
136842 TACAAAAAAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
123 101 1.00
ACGTcount: A:0.45, C:0.31, G:0.21, T:0.03
Consensus pattern (123 bp):
AAACAACAGCACGGCAGCAACAACAGAAGCTCCAACAAGCAGGCAAGCACGAACAGCAACGAAAC
AACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGACAAGCACGAACAGCAAACG
Found at i:136867 original size:61 final size:63
Alignment explanation
Indices: 136609--136877 Score: 306
Period size: 61 Copynumber: 4.4 Consensus size: 63
136599 CGAACAACAG
*
136609 CCAAACAACAGCACGGCAGCAACAACAGAAGCTCCAACAAGCAGGCAAGCACGAACAGC-A--A
1 CCAAACAACAGCACGGCAGCAACAACAGCAGCTCCAACAAGCAGGCAAGCAC-AACAGCAATGA
* * *
136670 CGAAACAACAGCACGACAGCAACAACAGCAGCTCCAACAAGCAGACAAGCACGAACAGCAA--A
1 CCAAACAACAGCACGGCAGCAACAACAGCAGCTCCAACAAGCAGGCAAGCAC-AACAGCAATGA
* * * *
136732 CGAAACAATAGCACGGCAGCAGCAACAGCAGCTCCAACAAGCAGGCAAGCATGAACAGCAATG-
1 CCAAACAACAGCACGGCAGCAACAACAGCAGCTCCAACAAGCAGGCAAGCA-CAACAGCAATGA
* * * *
136795 --AAACAACAGCACGACAGCAACAACAGCGGCTCCAACAAGCAGGCAAGTACAA-A-AAATGA
1 CCAAACAACAGCACGGCAGCAACAACAGCAGCTCCAACAAGCAGGCAAGCACAACAGCAATGA
* * *
136854 CCAAAGAATAGCACGGTAGCAACA
1 CCAAACAACAGCACGGCAGCAACA
136878 TTGAACAACT
Statistics
Matches: 181, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
58 4 0.02
59 1 0.01
60 2 0.01
61 117 0.65
62 57 0.31
ACGTcount: A:0.46, C:0.30, G:0.20, T:0.04
Consensus pattern (63 bp):
CCAAACAACAGCACGGCAGCAACAACAGCAGCTCCAACAAGCAGGCAAGCACAACAGCAATGA
Found at i:139531 original size:18 final size:18
Alignment explanation
Indices: 139484--139519 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
139474 ATAATTAAAA
139484 AAATTAAAATTTAAGTTT
1 AAATTAAAATTTAAGTTT
139502 AAATTAAAATTTAA-TTT
1 AAATTAAAATTTAAGTTT
139519 A
1 A
139520 GTTTAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
AAATTAAAATTTAAGTTT
Found at i:141081 original size:27 final size:27
Alignment explanation
Indices: 141051--141103 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
141041 ATATTATTAA
*
141051 AATCA-ATAATAAATTTATTAAAATATC
1 AATCATATAA-AAATTTATAAAAATATC
*
141078 AATCATATAAGAATTTATAAAAATAT
1 AATCATATAAAAATTTATAAAAATAT
141104 GTAAAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.36
Consensus pattern (27 bp):
AATCATATAAAAATTTATAAAAATATC
Found at i:146858 original size:16 final size:16
Alignment explanation
Indices: 146837--146868 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
146827 ACCCGGATAT
*
146837 TTTTTATTTTTTTAAA
1 TTTTTATTTATTTAAA
146853 TTTTTATTTATTTAAA
1 TTTTTATTTATTTAAA
146869 AAATATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTATTTATTTAAA
Found at i:147419 original size:21 final size:21
Alignment explanation
Indices: 147352--147419 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 21
147342 GTTATATATT
147352 TTAAAATAAATTTTAAAAT-A
1 TTAAAATAAATTTTAAAATAA
*
147372 -TAAATTATAATTTTTAAAA-AA
1 TTAAA--ATAAATTTTAAAATAA
147393 TATAAAATAAATTTTAAAATAA
1 T-TAAAATAAATTTTAAAATAA
147415 TTAAA
1 TTAAA
147420 TATATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
19 4 0.10
21 29 0.73
22 3 0.08
23 4 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TTAAAATAAATTTTAAAATAA
Found at i:147561 original size:12 final size:12
Alignment explanation
Indices: 147544--147568 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
147534 TCAAGTTCTG
147544 TCTTTTTTTTTT
1 TCTTTTTTTTTT
147556 TCTTTTTTTTTT
1 TCTTTTTTTTTT
147568 T
1 T
147569 TTCAAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TCTTTTTTTTTT
Found at i:149200 original size:15 final size:15
Alignment explanation
Indices: 149176--149216 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
149166 GTCGTCGTCA
149176 TCATCATCATCATCT
1 TCATCATCATCATCT
* *
149191 TCATCCTCATCCTCT
1 TCATCATCATCATCT
*
149206 TGATCATCATC
1 TCATCATCATC
149217 GGACTCATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.22, C:0.37, G:0.02, T:0.39
Consensus pattern (15 bp):
TCATCATCATCATCT
Found at i:150867 original size:2 final size:2
Alignment explanation
Indices: 150860--150890 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
150850 GAATACATAC
*
150860 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
150891 GTACAAATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:154120 original size:2 final size:2
Alignment explanation
Indices: 154110--154154 Score: 58
Period size: 2 Copynumber: 23.0 Consensus size: 2
154100 AAAAATTAAA
*
154110 AT AT A- AT AT AT AT AT AT AT A- AT AA AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
154150 GAT AT
1 -AT AT
154155 TAATGTTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
1 2 0.05
2 34 0.89
3 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:154137 original size:13 final size:15
Alignment explanation
Indices: 154110--154154 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
154100 AAAAATTAAA
154110 ATATAATATATATAT
1 ATATAATATATATAT
*
154125 ATATAATAAATATAT
1 ATATAATATATATAT
154140 ATAT-ATATATGATAT
1 ATATAATATAT-ATAT
154155 TAATGTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 5 0.19
15 22 0.81
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATAATATATATAT
Found at i:154345 original size:17 final size:18
Alignment explanation
Indices: 154323--154364 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
154313 AAATTTAATT
*
154323 TAATTTATATAT-TTTTA
1 TAATTTATATATAATTTA
*
154340 TAATTTTTATATAATTTA
1 TAATTTATATATAATTTA
154358 T-ATTTAT
1 TAATTTAT
154365 TTACTTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTTATATATAATTTA
Found at i:154440 original size:20 final size:22
Alignment explanation
Indices: 154392--154477 Score: 64
Period size: 20 Copynumber: 4.3 Consensus size: 22
154382 TTTTATGTCT
*
154392 ATATATAAATTATATATATCAA
1 ATATATAAATTATATATATAAA
154414 AT-T-TAAATTATAT-TA-AAA
1 ATATATAAATTATATATATAAA
**
154432 ATATATAAA-TAT-T-TATTTA
1 ATATATAAATTATATATATAAA
* *
154451 ATATAAAAATTA-ATA-ATTAA
1 ATATATAAATTATATATATAAA
154471 ATATATA
1 ATATATA
154478 TTATACATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
18 7 0.13
19 15 0.29
20 27 0.52
21 1 0.02
22 2 0.04
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATATAAATTATATATATAAA
Found at i:155337 original size:21 final size:21
Alignment explanation
Indices: 155294--155333 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
155284 ATTAAAAAAA
* *
155294 TATTTTTATATTAATATTTAT
1 TATTTTAAAATTAATATTTAT
155315 TATTTTAAAATTAA-ATTTA
1 TATTTTAAAATTAATATTTA
155334 ATTAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTTTAAAATTAATATTTAT
Found at i:155724 original size:14 final size:13
Alignment explanation
Indices: 155698--155722 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
155688 TAATTGAATT
155698 TTTTAAAATTTTA
1 TTTTAAAATTTTA
155711 TTTTAAAATTTT
1 TTTTAAAATTTT
155723 TAAAAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTAAAATTTTA
Found at i:155982 original size:53 final size:51
Alignment explanation
Indices: 155923--156024 Score: 127
Period size: 53 Copynumber: 2.0 Consensus size: 51
155913 TAATAAGAAA
* *
155923 TTATATATTTATTTGATATTT-TAATAATTTATATTATATAA-ATTTTGATATAT
1 TTATATATTTATATCATATTTAT-ATAATTT-T-TTATATAATATTTT-ATATAT
*
155976 TTATATATTTATATCATATTTATATTATTTTTTATATAATATTTTATAT
1 TTATATATTTATATCATATTTATATAATTTTTTATATAATATTTTATAT
156025 TATATTTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
51 12 0.27
52 6 0.14
53 25 0.57
54 1 0.02
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.61
Consensus pattern (51 bp):
TTATATATTTATATCATATTTATATAATTTTTTATATAATATTTTATATAT
Found at i:155996 original size:11 final size:11
Alignment explanation
Indices: 155926--156061 Score: 86
Period size: 11 Copynumber: 12.3 Consensus size: 11
155916 TAAGAAATTA
155926 TATATTTAT-T
1 TATATTTATAT
*
155936 TGATATTT-TAA
1 T-ATATTTATAT
155947 TA-ATTTATAT
1 TATATTTATAT
** *
155957 TATATAAATTT
1 TATATTTATAT
155968 TGATATATT-TA-
1 T-ATAT-TTATAT
155979 TATATTTATAT
1 TATATTTATAT
*
155990 CATATTTATAT
1 TATATTTATAT
*
156001 TATTTTTTATAT
1 TA-TATTTATAT
*
156013 AATATTTTATAT
1 TATA-TTTATAT
156025 TATATTT-TAAT
1 TATATTTAT-AT
* *
156036 TATTTTTTGTAT
1 TA-TATTTATAT
156048 TATATTTATAT
1 TATATTTATAT
156059 TAT
1 TAT
156062 GTAATTATAT
Statistics
Matches: 96, Mismatches: 17, Indels: 25
0.70 0.12 0.18
Matches are distributed among these distances:
9 6 0.06
10 14 0.15
11 43 0.45
12 32 0.33
13 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (11 bp):
TATATTTATAT
Found at i:156011 original size:12 final size:12
Alignment explanation
Indices: 155994--156061 Score: 77
Period size: 12 Copynumber: 5.8 Consensus size: 12
155984 TTATATCATA
155994 TTTATATTATTT
1 TTTATATTATTT
* *
156006 TTTATATAATAT
1 TTTATATTATTT
*
156018 TTTATATTATAT
1 TTTATATTATTT
156030 TTTA-ATTATTT
1 TTTATATTATTT
* *
156041 TTTGTATTA-TA
1 TTTATATTATTT
156052 TTTATATTAT
1 TTTATATTAT
156062 GTAATTATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
11 18 0.38
12 29 0.62
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (12 bp):
TTTATATTATTT
Found at i:156030 original size:35 final size:35
Alignment explanation
Indices: 155978--156061 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 35
155968 TGATATATTT
*
155978 ATATATTTATATCATA-TTTATATTATTTTTTATATA
1 ATAT-TTTATATTATATTTTA-ATTATTTTTTATATA
* *
156014 ATATTTTATATTATATTTTAATTATTTTTTGTATT
1 ATATTTTATATTATATTTTAATTATTTTTTATATA
156049 ATA-TTTATATTAT
1 ATATTTTATATTAT
156062 GTAATTATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
34 10 0.23
35 26 0.59
36 8 0.18
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (35 bp):
ATATTTTATATTATATTTTAATTATTTTTTATATA
Found at i:156048 original size:23 final size:24
Alignment explanation
Indices: 155922--156058 Score: 95
Period size: 23 Copynumber: 5.6 Consensus size: 24
155912 TTAATAAGAA
* *
155922 ATTATATATTTATTTGATATTTTAAT
1 ATTATAT-TTTATATAATATTTT-AT
*
155948 AATT-TATATTATATAA-ATTTTGATAT
1 -ATTATATTTTATATAATA-TTT--TAT
*
155974 ATTTATATATTTATATCATA-TTTAT
1 A-TTATAT-TTTATATAATATTTTAT
*
155999 ATTATTTTTTATATAATATTTTAT
1 ATTATATTTTATATAATATTTTAT
* * *
156023 ATTATATTTTA-ATTATTTTTTGT
1 ATTATATTTTATATAATATTTTAT
156046 ATTATA-TTTATAT
1 ATTATATTTTATAT
156059 TATGTAATTA
Statistics
Matches: 90, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
22 4 0.04
23 27 0.30
24 21 0.23
25 14 0.16
26 7 0.08
27 9 0.10
28 7 0.08
29 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (24 bp):
ATTATATTTTATATAATATTTTAT
Found at i:156060 original size:23 final size:23
Alignment explanation
Indices: 155979--156079 Score: 80
Period size: 23 Copynumber: 4.3 Consensus size: 23
155969 GATATATTTA
* *
155979 TATATTTATATCA-TATTTATAT
1 TATATTTATATTATTTTTTATAT
* * *
156001 TATTTTTTATATAATATTTTATAT
1 TA-TATTTATATTATTTTTTATAT
*
156025 TATATTT-TAATTATTTTTTGTAT
1 TATATTTAT-ATTATTTTTTATAT
**
156048 TATATTTATATTATGTAATTATAT
1 TATATTTATATTAT-TTTTTATAT
*
156072 TGTATTTA
1 TATATTTA
156080 AAATTATTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
22 3 0.05
23 36 0.58
24 23 0.37
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (23 bp):
TATATTTATATTATTTTTTATAT
Found at i:157013 original size:26 final size:26
Alignment explanation
Indices: 156977--157178 Score: 210
Period size: 26 Copynumber: 7.3 Consensus size: 26
156967 TGTTATAAAT
156977 ATATTTAAATAATTTTAATTTATATA
1 ATATTTAAATAATTTTAATTTATATA
157003 ATATTTAAATAATTTTAATTTATATA
1 ATATTTAAATAATTTTAATTTATATA
157029 ATATTTAAATAATTTTAATTTATATA
1 ATATTTAAATAATTTTAATTTATATA
* *
157055 AAATTTAAA-ATATTAATAATTTATATTA
1 ATATTTAAATA-ATT-TTAATTTATA-TA
157083 TATAATTTTAAATAATTTTAATTTATATA
1 -AT-A-TTTAAATAATTTTAATTTATATA
* *
157112 AAATTTAAA-ATATTAATAATTTATATTA
1 ATATTTAAATA-ATT-TTAATTTATA-TA
*
157140 TATAATTTTAAATAATTTTTTATATTTATATT
1 -AT-A-TTTAAATAA--TTTTA-ATTTATATA
157172 ATATTTA
1 ATATTTA
157179 TTAAAATTAT
Statistics
Matches: 150, Mismatches: 9, Indels: 31
0.79 0.05 0.16
Matches are distributed among these distances:
25 2 0.01
26 72 0.48
27 19 0.13
28 5 0.03
29 8 0.05
30 12 0.08
31 18 0.12
32 5 0.03
33 9 0.06
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
ATATTTAAATAATTTTAATTTATATA
Found at i:157075 original size:16 final size:16
Alignment explanation
Indices: 157056--157134 Score: 59
Period size: 16 Copynumber: 5.4 Consensus size: 16
157046 ATTTATATAA
157056 AATTTAAAATATTAAT
1 AATTTAAAATATTAAT
157072 AATTT---ATATTATAT
1 AATTTAAAATATTA-AT
* *
157086 AATTTTAAATAATT-TT
1 AATTTAAAAT-ATTAAT
157102 AATTT---ATA-TAA-
1 AATTTAAAATATTAAT
157113 AATTTAAAATATTAAT
1 AATTTAAAATATTAAT
157129 AATTTA
1 AATTTA
157135 TATTATATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 22
0.68 0.03 0.30
Matches are distributed among these distances:
11 6 0.12
12 1 0.02
13 8 0.16
14 10 0.20
15 3 0.06
16 17 0.34
17 2 0.04
18 3 0.06
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTTAAAATATTAAT
Found at i:157096 original size:30 final size:29
Alignment explanation
Indices: 156996--157153 Score: 147
Period size: 27 Copynumber: 5.6 Consensus size: 29
156986 TAATTTTAAT
*
156996 TTATATAATATTTAAATAATTTTAATTTATA
1 TTATATAAT-TTTAAAT-ATTATAATTTATA
*
157027 -TA-AT-A-TTTAAATAATTTTAATTTATA
1 TTATATAATTTTAAAT-ATTATAATTTATA
*
157053 -TA-A-AATTTAAAATATTAATAATTTATA
1 TTATATAATTTTAAATATT-ATAATTTATA
*
157080 TTATATAATTTTAAATAATTTTAATTTATA
1 TTATATAATTTTAAAT-ATTATAATTTATA
*
157110 -TA-A-AATTTAAAATATTAATAATTTATA
1 TTATATAATTTTAAATATT-ATAATTTATA
157137 TTATATAATTTTAAATA
1 TTATATAATTTTAAATA
157154 ATTTTTTATA
Statistics
Matches: 109, Mismatches: 7, Indels: 23
0.78 0.05 0.17
Matches are distributed among these distances:
26 31 0.28
27 33 0.30
28 6 0.06
29 6 0.06
30 30 0.28
31 3 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (29 bp):
TTATATAATTTTAAATATTATAATTTATA
Found at i:157104 original size:33 final size:32
Alignment explanation
Indices: 157022--157175 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 32
157012 TAATTTTAAT
157022 TTATATAATATTTAAATAA-TTT-TAATTTATA
1 TTATATAAT-TTTAAATAATTTTATAATTTATA
* *
157053 -TA-A-AATTTAAAAT-A-TTAATAATTTATA
1 TTATATAATTTTAAATAATTTTATAATTTATA
157080 TTATATAATTTTAAATAA-TTT-TAATTTATA
1 TTATATAATTTTAAATAATTTTATAATTTATA
* *
157110 -TA-A-AATTTAAAAT-A-TTAATAATTTATA
1 TTATATAATTTTAAATAATTTTATAATTTATA
*
157137 TTATATAATTTTAAATAATTTTTTATATTTATA
1 TTATATAATTTTAAATAATTTTATA-ATTTATA
157170 TTATAT
1 TTATAT
157176 TTATTAAAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 22
0.77 0.07 0.17
Matches are distributed among these distances:
26 6 0.06
27 33 0.32
28 8 0.08
29 5 0.05
30 29 0.28
31 4 0.04
32 4 0.04
33 13 0.13
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (32 bp):
TTATATAATTTTAAATAATTTTATAATTTATA
Found at i:157107 original size:57 final size:57
Alignment explanation
Indices: 157022--157158 Score: 265
Period size: 57 Copynumber: 2.4 Consensus size: 57
157012 TAATTTTAAT
157022 TTATATAATATTTAAATAATTTTAATTTATATAAAATTTAAAATATTAATAATTTATA
1 TTATATAAT-TTTAAATAATTTTAATTTATATAAAATTTAAAATATTAATAATTTATA
157080 TTATATAATTTTAAATAATTTTAATTTATATAAAATTTAAAATATTAATAATTTATA
1 TTATATAATTTTAAATAATTTTAATTTATATAAAATTTAAAATATTAATAATTTATA
157137 TTATATAATTTTAAATAATTTT
1 TTATATAATTTTAAATAATTTT
157159 TTATATTTAT
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
57 70 0.89
58 9 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (57 bp):
TTATATAATTTTAAATAATTTTAATTTATATAAAATTTAAAATATTAATAATTTATA
Found at i:157177 original size:20 final size:20
Alignment explanation
Indices: 157154--157198 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
157144 ATTTTAAATA
* * *
157154 ATTTTTTATATTTATATTAT
1 ATTTTTTAAAATTATATCAT
*
157174 ATTTATTAAAATTATATCAT
1 ATTTTTTAAAATTATATCAT
157194 ATTTT
1 ATTTT
157199 AATTTTTTTA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTTTAAAATTATATCAT
Found at i:161909 original size:15 final size:15
Alignment explanation
Indices: 161889--161943 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 15
161879 AAGTATTTAC
161889 GTCGAAAATACTTGT
1 GTCGAAAATACTTGT
*
161904 GTCG-AAATACCTGT
1 GTCGAAAATACTTGT
* * *
161918 G-CTAGAATATTTGT
1 GTCGAAAATACTTGT
161932 GTC-AAAATACTT
1 GTCGAAAATACTT
161944 ATGTTAAAGT
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
13 1 0.03
14 25 0.81
15 5 0.16
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Consensus pattern (15 bp):
GTCGAAAATACTTGT
Found at i:163056 original size:13 final size:13
Alignment explanation
Indices: 163038--163067 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
163028 TTTTTTTTTA
163038 AATATTTATATTT
1 AATATTTATATTT
163051 AATATTTATATTT
1 AATATTTATATTT
163064 AATA
1 AATA
163068 CATTTTACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
AATATTTATATTT
Found at i:165497 original size:29 final size:30
Alignment explanation
Indices: 165440--165497 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
165430 TTTTTAATTA
165440 ATTTTCATCTTCTAAAATATAAAAATAAAT
1 ATTTTCATCTTCTAAAATATAAAAATAAAT
*
165470 ATTTT-AT-TTCTAAATTAATAAAAATAAA
1 ATTTTCATCTTCTAAAAT-ATAAAAATAAA
165498 AGCTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 8 0.31
29 13 0.50
30 5 0.19
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (30 bp):
ATTTTCATCTTCTAAAATATAAAAATAAAT
Found at i:175410 original size:14 final size:14
Alignment explanation
Indices: 175387--175416 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
175377 TTTAATATAA
*
175387 ATATTTTTTATATT
1 ATATTATTTATATT
175401 ATATTATTTATATT
1 ATATTATTTATATT
175415 AT
1 AT
175417 TTAATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATATTATTTATATT
Found at i:175487 original size:23 final size:23
Alignment explanation
Indices: 175442--175514 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 23
175432 TAATTTTATT
175442 TAAAT-TTAATTATAAAAAT-ATA
1 TAAATATTAA-TATAAAAATAATA
175464 TAAATATTAATATAAAAATAATA
1 TAAATATTAATATAAAAATAATA
** *
175487 T-TTTAATAATATAATAAATAATA
1 TAAATATTAATATAA-AAATAATA
175510 -AAATA
1 TAAATA
175515 ATCTTTTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
22 24 0.57
23 18 0.43
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
TAAATATTAATATAAAAATAATA
Found at i:175500 original size:34 final size:32
Alignment explanation
Indices: 175461--175562 Score: 102
Period size: 34 Copynumber: 3.1 Consensus size: 32
175451 TTATAAAAAT
175461 ATATAAATATTAATATAAAAATAATATTTTAATA
1 ATATAAATA--AATATAAAAATAATATTTTAATA
*
175495 ATAT-AATAAATA-ATAAAATAATCTTTTAAATTA
1 ATATAAATAAATATA-AAAATAATATTTT-AA-TA
* * *
175528 ATATAAATAAATCTAAACATAATTTTTTAA-A
1 ATATAAATAAATATAAAAATAATATTTTAATA
175559 ATAT
1 ATAT
175563 TTTGGCTACG
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
30 1 0.02
31 21 0.36
32 2 0.03
33 12 0.20
34 22 0.37
35 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (32 bp):
ATATAAATAAATATAAAAATAATATTTTAATA
Found at i:175501 original size:8 final size:8
Alignment explanation
Indices: 175452--175516 Score: 50
Period size: 8 Copynumber: 8.8 Consensus size: 8
175442 TAAATTTAAT
*
175452 TATAAAAA
1 TATAATAA
175460 TAT-ATAA
1 TATAATAA
*
175467 -ATATTAA
1 TATAATAA
175474 TATAA-AA
1 TATAATAA
*
175481 -ATAATAT
1 TATAATAA
*
175488 TTTAATAA
1 TATAATAA
175496 TATAATAA
1 TATAATAA
175504 -ATAATAA
1 TATAATAA
*
175511 AATAAT
1 TATAAT
175517 CTTTTAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
6 6 0.13
7 16 0.36
8 23 0.51
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TATAATAA
Found at i:175516 original size:31 final size:31
Alignment explanation
Indices: 175461--175562 Score: 100
Period size: 31 Copynumber: 3.1 Consensus size: 31
175451 TTATAAAAAT
175461 ATATAAATATTAATATAAAAATAATATTTTAATA
1 ATATAAATA--AATAT-AAAATAATATTTTAATA
*
175495 ATAT-AATAAATAATAAAATAATCTTTTAAATTA
1 ATATAAATAAAT-ATAAAATAATATTTT-AA-TA
* *
175528 ATATAAATAAATCTAAACATAATTTTTTAA-A
1 ATATAAATAAATATAAA-ATAATATTTTAATA
175559 ATAT
1 ATAT
175563 TTTGGCTACG
Statistics
Matches: 60, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
31 20 0.33
32 4 0.07
33 16 0.27
34 20 0.33
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (31 bp):
ATATAAATAAATATAAAATAATATTTTAATA
Found at i:177218 original size:7 final size:7
Alignment explanation
Indices: 177206--177264 Score: 70
Period size: 7 Copynumber: 8.7 Consensus size: 7
177196 AAATTTTTTA
177206 AAAAATT
1 AAAAATT
*
177213 AAAAATA
1 AAAAATT
177220 AAAAATT
1 AAAAATT
177227 -AAAA--
1 AAAAATT
177231 AAAAATT
1 AAAAATT
177238 AAAAATT
1 AAAAATT
177245 AAAAAATT
1 -AAAAATT
*
177253 AAAAAAT
1 AAAAATT
177260 AAAAA
1 AAAAA
177265 CAAATAATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
5 4 0.09
6 4 0.09
7 30 0.67
8 7 0.16
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (7 bp):
AAAAATT
Found at i:177220 original size:25 final size:25
Alignment explanation
Indices: 177205--177258 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 25
177195 AAAATTTTTT
177205 AAAAAATTAAAAATAAAAAATTAAA
1 AAAAAATTAAAAATAAAAAATTAAA
177230 AAAAAATTAAAAATTAAAAAATTAAA
1 AAAAAATTAAAAA-TAAAAAATTAAA
177256 AAA
1 AAA
177259 TAAAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (25 bp):
AAAAAATTAAAAATAAAAAATTAAA
Found at i:177240 original size:33 final size:33
Alignment explanation
Indices: 177206--177269 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
177196 AAATTTTTTA
177206 AAAAATT-AAAAA-TAAAAAATTAAAAAAAAATT
1 AAAAATTAAAAAATTAAAAAA-TAAAAAAAAATT
*
177238 AAAAATTAAAAAATTAAAAAATAAAAACAAAT
1 AAAAATTAAAAAATTAAAAAATAAAAAAAAAT
177270 AATATAAGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 7 0.24
33 15 0.52
34 7 0.24
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (33 bp):
AAAAATTAAAAAATTAAAAAATAAAAAAAAATT
Found at i:177757 original size:9 final size:10
Alignment explanation
Indices: 177742--177789 Score: 55
Period size: 9 Copynumber: 4.9 Consensus size: 10
177732 TTATTATTAT
*
177742 TATAAAAATT
1 TATAAAAATA
177752 TA-AAAAATA
1 TATAAAAATA
177761 TATAAAAATA
1 TATAAAAATA
*
177771 TATTTAAAATA
1 TA-TAAAAATA
177782 -ATAAAAAT
1 TATAAAAAT
177790 TTAATATGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 14 0.42
10 12 0.36
11 7 0.21
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
TATAAAAATA
Found at i:177764 original size:19 final size:19
Alignment explanation
Indices: 177742--177793 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
177732 TTATTATTAT
177742 TATAAAAATTTAAAAAATA
1 TATAAAAATTTAAAAAATA
**
177761 TATAAAAATATATTTAAAATA
1 TATAAAAAT-T-TAAAAAATA
177782 -ATAAAAATTTAA
1 TATAAAAATTTAA
177794 TATGTAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
18 1 0.04
19 10 0.37
20 9 0.33
21 7 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TATAAAAATTTAAAAAATA
Found at i:177785 original size:20 final size:22
Alignment explanation
Indices: 177755--177810 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
177745 AAAAATTTAA
*
177755 AAAATATATAAAAA-T-ATATTT
1 AAAATA-ATAAAAATTAATATGT
177776 AAAATAATAAAAATTTAATATGT
1 AAAATAATAAAAA-TTAATATGT
177799 AAAATAATAAAA
1 AAAATAATAAAA
177811 TTATTTTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 7 0.23
21 6 0.19
22 1 0.03
23 17 0.55
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATAATAAAAATTAATATGT
Found at i:177824 original size:23 final size:22
Alignment explanation
Indices: 177755--177826 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 22
177745 AAAAATTTAA
*
177755 AAAATATATAAAAA--TATATTT
1 AAAATA-ATAAAAATTTATATCT
*
177776 AAAATAATAAAAATTTAATATGT
1 AAAATAATAAAAATTT-ATATCT
177799 AAAATAATAAAATTATTT-TATCT
1 AAAATAATAAAA--ATTTATATCT
177822 AAAAT
1 AAAAT
177827 TTAACTTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 7 0.16
21 6 0.14
22 1 0.02
23 26 0.59
25 4 0.09
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (22 bp):
AAAATAATAAAAATTTATATCT
Found at i:180130 original size:24 final size:23
Alignment explanation
Indices: 180078--180132 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
180068 TAAATTTTTA
*
180078 AATAAAAATATATTTTAAAAAAT
1 AATAAAAATATATTATAAAAAAT
* * *
180101 AGTAAAAATAATATTATAATATAT
1 AATAAAAAT-ATATTATAAAAAAT
180125 AATAAAAA
1 AATAAAAA
180133 CTCATATCAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AATAAAAATATATTATAAAAAAT
Found at i:180439 original size:16 final size:15
Alignment explanation
Indices: 180411--180460 Score: 73
Period size: 15 Copynumber: 3.2 Consensus size: 15
180401 AACTTCATGT
180411 TTATTTTTTAAAAAA
1 TTATTTTTTAAAAAA
180426 TTATTTTTTAAAAAA
1 TTATTTTTTAAAAAA
*
180441 TATATAATTTTAAAAAA
1 T-TAT-TTTTTAAAAAA
180458 TTA
1 TTA
180461 GCCGTACAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
15 16 0.50
16 5 0.16
17 11 0.34
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATTTTTTAAAAAA
Found at i:181066 original size:15 final size:15
Alignment explanation
Indices: 181046--181099 Score: 63
Period size: 16 Copynumber: 3.5 Consensus size: 15
181036 TTACTCTAAC
181046 TTAAAATAATTTAAT
1 TTAAAATAATTTAAT
*
181061 TTAAAATAATTTGAAC
1 TTAAAATAATTT-AAT
* *
181077 TTAAAATAGTTCAAAT
1 TTAAAATAATT-TAAT
181093 TTAAAAT
1 TTAAAAT
181100 GATCAAAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 12 0.36
16 21 0.64
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.41
Consensus pattern (15 bp):
TTAAAATAATTTAAT
Found at i:181448 original size:31 final size:33
Alignment explanation
Indices: 181408--181491 Score: 95
Period size: 31 Copynumber: 2.6 Consensus size: 33
181398 TAAAATAATT
* *
181408 TAATCTAAATTTAAATAAATT-CCAACT-TAACA
1 TAATTTAAATTTAAATAAATTACCAACTCCAA-A
181440 -AATTTAAATTTAAA-AAATTACCAACTCCAAA
1 TAATTTAAATTTAAATAAATTACCAACTCCAAA
*
181471 TAATTTAAATATAAAATAAAT
1 TAATTTAAAT-TTAAATAAAT
181492 CTAATTGCCA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
30 5 0.11
31 20 0.45
32 11 0.25
33 4 0.09
34 4 0.09
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (33 bp):
TAATTTAAATTTAAATAAATTACCAACTCCAAA
Found at i:189522 original size:25 final size:25
Alignment explanation
Indices: 189494--189544 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
189484 AAAAATAAAA
189494 AATAAATTATAA-ATAATATTATATT
1 AATAAATTATAATATAA-ATTATATT
* *
189519 AATAATTTATAATATAAATTTTATT
1 AATAAATTATAATATAAATTATATT
189544 A
1 A
189545 CATTCGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
AATAAATTATAATATAAATTATATT
Found at i:189588 original size:15 final size:16
Alignment explanation
Indices: 189570--189602 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
189560 TTATATCATA
189570 TTTATAT-TATTATTT
1 TTTATATATATTATTT
189585 TTTATATATATTATTT
1 TTTATATATATTATTT
189601 TT
1 TT
189603 ATGCTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTATATATATTATTT
Found at i:190018 original size:33 final size:32
Alignment explanation
Indices: 189942--190024 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 32
189932 TTATATTAAA
* *
189942 AATATTTTATATTTATATAAATTATAATATTTT
1 AATAATTTATA-TTATATAAATTATAAGATTTT
* *
189975 AATAAGTTATATTATATAAATTTTAAGATATTT
1 AATAATTTATATTATATAAATTATAAGAT-TTT
*
190008 -ATGTATTTATATTATAT
1 AAT-AATTTATATTATAT
190025 TTTTATTATT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
32 18 0.43
33 24 0.57
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (32 bp):
AATAATTTATATTATATAAATTATAAGATTTT
Found at i:190031 original size:11 final size:11
Alignment explanation
Indices: 190011--190058 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
190001 GATATTTATG
*
190011 TATTTATATTA
1 TATTTTTATTA
190022 TATTTTTA-T-
1 TATTTTTATTA
*
190031 TA-TTTTATAA
1 TATTTTTATTA
190041 TATTTTTATTA
1 TATTTTTATTA
190052 T-TTTTTA
1 TATTTTTA
190059 CTATTTTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
8 5 0.16
9 2 0.06
10 9 0.29
11 15 0.48
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TATTTTTATTA
Found at i:190043 original size:19 final size:19
Alignment explanation
Indices: 190005--190066 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
189995 TTTTAAGATA
*
190005 TTTATGTATTTATATTATATT
1 TTTAT-TATTT-TATAATATT
190026 TTTATTATTTTATAATATT
1 TTTATTATTTTATAATATT
* *
190045 TTTATTATTTTTTACTATT
1 TTTATTATTTTATAATATT
190064 TTT
1 TTT
190067 CACATCATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 28 0.74
20 5 0.13
21 5 0.13
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTATTATTTTATAATATT
Found at i:190066 original size:10 final size:10
Alignment explanation
Indices: 190017--190066 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
190007 TATGTATTTA
190017 TATTATATTTT
1 TATTAT-TTTT
*
190028 TATTATTTTA
1 TATTATTTTT
*
190038 TAATA-TTTT
1 TATTATTTTT
190047 TATTATTTTT
1 TATTATTTTT
*
190057 TACTATTTTT
1 TATTATTTTT
190067 CACATCATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
9 7 0.21
10 20 0.61
11 6 0.18
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTATTTTT
Found at i:191435 original size:27 final size:26
Alignment explanation
Indices: 191405--191457 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
191395 ATGATTAAAA
191405 AAAT-TTTAAAATATGATATGAATATAT
1 AAATATTTAAAAT-TGATAT-AATATAT
*
191432 AAATAATTTAAAATTTATATAATATA
1 AAAT-ATTTAAAATTGATATAATATA
191458 ACATATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 10 0.43
28 5 0.22
29 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (26 bp):
AAATATTTAAAATTGATATAATATAT
Found at i:191469 original size:16 final size:16
Alignment explanation
Indices: 191428--191497 Score: 56
Period size: 16 Copynumber: 4.3 Consensus size: 16
191418 TGATATGAAT
* *
191428 ATATAAATAATTTAAA
1 ATATTAATAATATAAA
*
191444 AT-TTATATAATATAAC
1 ATATTA-ATAATATAAA
191460 ATATTAATAA-ATTAAA
1 ATATTAATAATA-TAAA
191476 AT-TTATATAAATATAAA
1 ATATTA-AT-AATATAAA
191493 ATATT
1 ATATT
191498 TTAAATATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
15 6 0.14
16 23 0.53
17 11 0.26
18 3 0.07
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATTAATAATATAAA
Found at i:191475 original size:32 final size:33
Alignment explanation
Indices: 191428--191526 Score: 109
Period size: 32 Copynumber: 3.1 Consensus size: 33
191418 TGATATGAAT
* * *
191428 ATATAAATAATTTAAAATTTATAT-AATATAAC
1 ATATTAATAAATTAAAATTTATATAAATATAAA
191460 ATATTAATAAATTAAAATTTATATAAATATAAA
1 ATATTAATAAATTAAAATTTATATAAATATAAA
* *
191493 ATATT-TTAAA-TATAA-TTATAATAAAT-TAAA
1 ATATTAATAAATTAAAATTTAT-ATAAATATAAA
191523 ATAT
1 ATAT
191527 GTGAATGTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
30 12 0.20
31 10 0.17
32 26 0.43
33 12 0.20
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (33 bp):
ATATTAATAAATTAAAATTTATATAAATATAAA
Found at i:191502 original size:16 final size:17
Alignment explanation
Indices: 191440--191507 Score: 65
Period size: 16 Copynumber: 4.2 Consensus size: 17
191430 ATAAATAATT
191440 TAAAAT-TTA-TATAATA
1 TAAAATATTATTA-AATA
* *
191456 TAACATATTAATAAAT-
1 TAAAATATTATTAAATA
191472 TAAAAT-TTATATAAATA
1 TAAAATATTAT-TAAATA
191489 TAAAATATT-TTAAATA
1 TAAAATATTATTAAATA
191505 TAA
1 TAA
191508 TTATAATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
15 3 0.07
16 24 0.55
17 13 0.30
18 4 0.09
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAAATATTATTAAATA
Found at i:191938 original size:20 final size:20
Alignment explanation
Indices: 191915--191952 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
191905 TTGATAGGCC
191915 CTCTCTTTCTTTGTTTCTCT
1 CTCTCTTTCTTTGTTTCTCT
* *
191935 CTCTCTTTTTTTTTTTCT
1 CTCTCTTTCTTTGTTTCT
191953 TAGAATAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (20 bp):
CTCTCTTTCTTTGTTTCTCT
Found at i:192347 original size:16 final size:16
Alignment explanation
Indices: 192326--192374 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
192316 GTTTGATCAT
192326 TTATATATTTATATTA
1 TTATATATTTATATTA
*
192342 TTATATATATTTTATTA
1 TTATATAT-TTATATTA
*
192359 -TATTATAATTATATTA
1 TTA-TATATTTATATTA
192375 AAAATATTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 17 0.61
17 11 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATATATTTATATTA
Found at i:192370 original size:14 final size:15
Alignment explanation
Indices: 192329--192370 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
192319 TGATCATTTA
192329 TATATT-TATATTAT
1 TATATTATATATTAT
*
192343 TATA-TATATTTTAT
1 TATATTATATATTAT
192357 TATATTATA-ATTAT
1 TATATTATATATTAT
192371 ATTAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 1 0.04
14 19 0.79
15 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TATATTATATATTAT
Found at i:193405 original size:47 final size:47
Alignment explanation
Indices: 193331--193421 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
193321 AAAACTAAAT
*
193331 TACAATAAAATTTGTGTTCTTTTATTTCTTTATTATTGAATTTTAAC
1 TACAATAAAATTTATGTTCTTTTATTTCTTTATTATTGAATTTTAAC
* * * *
193378 TACATTAAAATTTATGTTTTTTTATTTCTTTATTGTTGAGTTTT
1 TACAATAAAATTTATGTTCTTTTATTTCTTTATTATTGAATTTT
193422 TATGGGTTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.26, C:0.07, G:0.08, T:0.59
Consensus pattern (47 bp):
TACAATAAAATTTATGTTCTTTTATTTCTTTATTATTGAATTTTAAC
Found at i:196200 original size:13 final size:13
Alignment explanation
Indices: 196161--196199 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
196151 ATTTAAAATT
196161 TTTTAAAGATATAA
1 TTTTAAA-ATATAA
196175 TTTTAAAATATAA
1 TTTTAAAATATAA
196188 TTATTAGAAATA
1 TT-TTA-AAATA
196200 ACTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.35
14 10 0.43
15 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (13 bp):
TTTTAAAATATAA
Found at i:197407 original size:31 final size:31
Alignment explanation
Indices: 197369--197432 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
197359 ATTTCATTTC
*
197369 ATCTTGACAATGAAA-TTAGTTAATTATGATA
1 ATCTTGACAATGAAATTTA-TTAAGTATGATA
197400 ATCTTGACAATGAAATTTATTAAGTATGATA
1 ATCTTGACAATGAAATTTATTAAGTATGATA
197431 AT
1 AT
197433 TAATGATCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (31 bp):
ATCTTGACAATGAAATTTATTAAGTATGATA
Found at i:199119 original size:11 final size:12
Alignment explanation
Indices: 199071--199119 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
199061 ATTAATTATG
199071 AAAATAATATTT
1 AAAATAATATTT
*
199083 ATAAATAATAATT
1 A-AAATAATATTT
199096 -AAAT-ATATGTT
1 AAAATAATAT-TT
199107 AAAA-AATATTT
1 AAAATAATATTT
199118 AA
1 AA
199120 CTAAAGAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
10 3 0.10
11 10 0.32
12 8 0.26
13 10 0.32
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (12 bp):
AAAATAATATTT
Found at i:199631 original size:14 final size:15
Alignment explanation
Indices: 199600--199633 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
199590 TAGACGAGTG
199600 TATATAACTTTTTGA
1 TATATAACTTTTTGA
*
199615 TATATAA-TTTTTTA
1 TATATAACTTTTTGA
199629 TATAT
1 TATAT
199634 TTAATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (15 bp):
TATATAACTTTTTGA
Found at i:199633 original size:16 final size:15
Alignment explanation
Indices: 199600--199633 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
199590 TAGACGAGTG
*
199600 TATATAACTTTTTGA
1 TATATAATTTTTTGA
199615 TATATAATTTTTT-A
1 TATATAATTTTTTGA
199629 TATAT
1 TATAT
199634 TTAATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (15 bp):
TATATAATTTTTTGA
Found at i:200469 original size:20 final size:20
Alignment explanation
Indices: 200419--200471 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
200409 GATTGAAAAG
* *
200419 AAATTAAATATAAATTATGTA
1 AAATTAAAT-TAAAATATATA
*
200440 AAA-AATAATTAAAATATATA
1 AAATTA-AATTAAAATATATA
200460 AAATTAAATTAA
1 AAATTAAATTAA
200472 TTTTTGAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (20 bp):
AAATTAAATTAAAATATATA
Found at i:201416 original size:2 final size:2
Alignment explanation
Indices: 201409--201437 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
201399 TTACACTTTT
201409 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
201438 CATTCTGACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:202425 original size:2 final size:2
Alignment explanation
Indices: 202418--202456 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
202408 ACTTCACCCC
202418 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
202457 TGGCCCTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:204734 original size:2 final size:2
Alignment explanation
Indices: 204727--204751 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
204717 TTTAAGAGTC
204727 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
204752 GATAGTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:205314 original size:27 final size:26
Alignment explanation
Indices: 205283--205334 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
205273 AAAATTTAAA
*
205283 TTTAAAATTATTACATAAATATAATTT
1 TTTAAAATGATTACATAAAT-TAATTT
* *
205310 TTTAAAGTGATTATATAAATTAATT
1 TTTAAAATGATTACATAAATTAATT
205335 AGATTATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (26 bp):
TTTAAAATGATTACATAAATTAATTT
Found at i:206037 original size:19 final size:21
Alignment explanation
Indices: 205988--206039 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 21
205978 AAATTTTATT
205988 TAAA-TTTAATTATAAAAAATA
1 TAAATTTTAA-TATAAAAAATA
*
206009 TAAATATTAATAT-AAAAATA
1 TAAATTTTAATATAAAAAATA
*
206029 -ATATTTTAATA
1 TAAATTTTAATA
206040 ATATAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 9 0.33
20 7 0.26
21 7 0.26
22 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATTTTAATATAAAAAATA
Found at i:207514 original size:17 final size:17
Alignment explanation
Indices: 207484--207531 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
207474 TTAATTATGT
*
207484 AAATATAAACATAATATA
1 AAATATTAA-ATAATATA
* *
207502 AATTATTAAATAATTTA
1 AAATATTAAATAATATA
207519 AAATATTAAATAA
1 AAATATTAAATAA
207532 AAATATGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
AAATATTAAATAATATA
Found at i:208062 original size:2 final size:2
Alignment explanation
Indices: 208055--208083 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
208045 TCTAAAGTCC
208055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
208084 AACTCTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:208430 original size:17 final size:17
Alignment explanation
Indices: 208408--208469 Score: 88
Period size: 17 Copynumber: 3.5 Consensus size: 17
208398 AATTAAAAAT
208408 TATTAAAATTATATTTA
1 TATTAAAATTATATTTA
* *
208425 TATTAAGTAATAATATATA
1 TATTAA--AATTATATTTA
208444 TATTAAAATTATATTTA
1 TATTAAAATTATATTTA
208461 TATTAAAAT
1 TATTAAAAT
208470 ATAATTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 24 0.62
19 15 0.38
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
TATTAAAATTATATTTA
Found at i:208484 original size:29 final size:29
Alignment explanation
Indices: 208420--208509 Score: 101
Period size: 29 Copynumber: 3.0 Consensus size: 29
208410 TTAAAATTAT
* * *
208420 ATTTATATTAAGTAATAATATATATATTAAA
1 ATTTATATTTA-TATTAAAATATA-ATTAAA
208451 A-TTATATTTATATTAAAATATAATTAAA
1 ATTTATATTTATATTAAAATATAATTAAA
* *
208479 ATTTATATTTATTTTAAAAAATAAATTAAA
1 ATTTATATTTATATTAAAATAT-AATTAAA
208509 A
1 A
208510 ATAGAAACAA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 7 0.13
29 28 0.54
30 16 0.31
31 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (29 bp):
ATTTATATTTATATTAAAATATAATTAAA
Found at i:208836 original size:22 final size:22
Alignment explanation
Indices: 208811--208854 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
208801 CAAGTTTCAG
208811 TAGGAATTAATGACACGAGCAC
1 TAGGAATTAATGACACGAGCAC
208833 TAGGAATTAATGACACGAGCAC
1 TAGGAATTAATGACACGAGCAC
208855 GGTGCCAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (22 bp):
TAGGAATTAATGACACGAGCAC
Found at i:214378 original size:17 final size:17
Alignment explanation
Indices: 214356--214391 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
214346 TTATTAAAAA
214356 TATTTTTAAT-TGATATT
1 TATTTTTAATAT-ATATT
214373 TATTTTTAATATATATT
1 TATTTTTAATATATATT
214390 TA
1 TA
214392 ATATTGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TATTTTTAATATATATT
Found at i:215245 original size:13 final size:12
Alignment explanation
Indices: 215201--215244 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
215191 GACGTAATAT
215201 ATATTATTATAA
1 ATATTATTATAA
* *
215213 ATAATTATGATTA
1 AT-ATTATTATAA
215226 ATATTAATTATAA
1 ATATT-ATTATAA
215239 ATATTA
1 ATATTA
215245 AATATAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (12 bp):
ATATTATTATAA
Found at i:215545 original size:26 final size:26
Alignment explanation
Indices: 215488--215545 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
215478 TCATATTCAT
* *
215488 TATTTATAATCTGTTTTTTAAATCAA
1 TATTTATAATCTATTTTTCAAATCAA
* *
215514 TTTTTATAAT-TATTTTTCAAATGTAA
1 TATTTATAATCTATTTTTCAAAT-CAA
215540 TATTTA
1 TATTTA
215546 AAAAATTAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.57
Consensus pattern (26 bp):
TATTTATAATCTATTTTTCAAATCAA
Found at i:216783 original size:21 final size:22
Alignment explanation
Indices: 216757--216798 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
216747 TCATAATTGA
*
216757 TTTTTAAAG-TTTTTTTCTTGG
1 TTTTTAAAGATTTTTTACTTGG
*
216778 TTTTTAATGATTTTTTACTTG
1 TTTTTAAAGATTTTTTACTTG
216799 TTAAATAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.17, C:0.05, G:0.12, T:0.67
Consensus pattern (22 bp):
TTTTTAAAGATTTTTTACTTGG
Found at i:217565 original size:32 final size:29
Alignment explanation
Indices: 217497--217566 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
217487 AAGATTTTGG
* *
217497 TTTAATAAAATTATAGATTGAATTTAATT
1 TTTAATATAATTATAGATTGAATTTAAAT
*
217526 TATTAATATAATTATTGAATTTGACATTTAAAT
1 T-TTAATATAATTATAG-A-TTGA-ATTTAAAT
217559 TTTAATAT
1 TTTAATAT
217567 TTTATTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 1 0.03
30 13 0.38
31 1 0.03
32 11 0.32
33 8 0.24
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (29 bp):
TTTAATATAATTATAGATTGAATTTAAAT
Found at i:217750 original size:17 final size:16
Alignment explanation
Indices: 217728--217783 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
217718 CTTTAGAATA
217728 ATTTAATAAAAATATAT
1 ATTTAATAAAAATAT-T
217745 ATTTAATATAAAA-ATT
1 ATTTAATA-AAAATATT
*
217761 ATTTTAT-AAAATATT
1 ATTTAATAAAAATATT
217776 ATCTTAAT
1 AT-TTAAT
217784 TTAGGATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 11 0.32
17 10 0.29
18 4 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTTAATAAAAATATT
Found at i:218133 original size:12 final size:12
Alignment explanation
Indices: 218116--218167 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
218106 ATATTGTATT
218116 TATATAATTATA
1 TATATAATTATA
218128 TATATAATTATA
1 TATATAATTATA
* *
218140 TTTA-AAATATA
1 TATATAATTATA
*
218151 -ATATATATTTTA
1 TATATA-ATTATA
218163 TATAT
1 TATAT
218168 TATATAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
10 2 0.06
11 7 0.22
12 19 0.59
13 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TATATAATTATA
Found at i:218197 original size:18 final size:18
Alignment explanation
Indices: 218093--218197 Score: 72
Period size: 18 Copynumber: 5.7 Consensus size: 18
218083 TTATGTTTAA
* *
218093 ATTTGATATATTTATATTGT
1 ATTT-ATATATTT-TAATAT
*
218113 ATTTATATAATTATATATAT
1 ATTTATAT-ATTTTA-ATAT
* **
218133 AATTATAT-TTAAAATAT
1 ATTTATATATTTTAATAT
*
218150 A-ATATATATTTT-ATAT
1 ATTTATATATTTTAATAT
*
218166 ATTATATAAATTTTAATAT
1 ATT-TATATATTTTAATAT
218185 ATTTATATATTTT
1 ATTTATATATTTT
218198 TTTATTATTT
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
16 10 0.15
17 7 0.10
18 22 0.32
19 13 0.19
20 16 0.24
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
ATTTATATATTTTAATAT
Found at i:218554 original size:2 final size:2
Alignment explanation
Indices: 218547--218591 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
218537 TACTTTAGTG
218547 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
218589 TC T
1 TC T
218592 TTTTGAGTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:221081 original size:253 final size:246
Alignment explanation
Indices: 220621--221113 Score: 869
Period size: 253 Copynumber: 2.0 Consensus size: 246
220611 AGTGAACGAA
*
220621 AGTATTGGGTGTAGAGATTTTCTTAGGTTATCATGCACCATGTGCTGGTGAGGTGAAGGACAATT
1 AGTATTGGGTGTAGAGATTTTCTTACGTTATCATGCACCATGTGCTGGTGAGGTGAAGGACAATT
* *
220686 GGTTCGGGAAAGGGGAGAGAGGAGTGATTGGGAAAGAGGACACAGTTGGATCGTGTACTAGGCTC
66 GGTTCAGGAAAGAGGAGAGAGGAGTGATTGGGAAAGAGGACACAGTTGGATCGTGTACTAGGCTC
*
220751 AGGATTCTTAGAAGATTAATTGATTATCCGAACTTCTACTGAAATTTGCCTGGTTAGATCTCTCT
131 AGGATTCTTACAAGATTAATTGATTATCCGAACTTCTACTGAAATTTGCCTGGTTAGATCTCTCT
*
220816 ATATAGGTATTATTTGGTCTGAAATTTTTTCTTCAGGGAGGAGCTGGGCTC
196 ATAGAGGTATTATTTGGTCTGAAATTTTTTCTTCAGGGAGGAGCTGGGCTC
220867 AGTATTGGGTGTAGAGATTTTCTTACGTTATCATGCACCATGTGCTGGTGAGGTGAAGGACAATT
1 AGTATTGGGTGTAGAGATTTTCTTACGTTATCATGCACCATGTGCTGGTGAGGTGAAGGACAATT
220932 GGTTCAGGAAAGAGGAGAGAGGAGTGATTGGGAAAGAGGACAGTGTGAGCAGTTGGATCGTGTAC
66 GGTTCAGGAAAGAGGAGAGAGGAGTGATTGGGAAAGAGGAC------A-CAGTTGGATCGTGTAC
220997 TAGGCTCAGGATTCTTACAAGATTAATTGATTATCCGAACTTCTACTGAAATTTGCCTGGTTAGA
124 TAGGCTCAGGATTCTTACAAGATTAATTGATTATCCGAACTTCTACTGAAATTTGCCTGGTTAGA
*
221062 TTTCTCTATAGAGGTATTATTTGGTCTGAAATTTTTTCTTCAGGGAGGAGCT
189 TCTCTCTATAGAGGTATTATTTGGTCTGAAATTTTTTCTTCAGGGAGGAGCT
221114 ATTCGCCAAG
Statistics
Matches: 234, Mismatches: 6, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
246 103 0.44
252 1 0.00
253 130 0.56
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.32
Consensus pattern (246 bp):
AGTATTGGGTGTAGAGATTTTCTTACGTTATCATGCACCATGTGCTGGTGAGGTGAAGGACAATT
GGTTCAGGAAAGAGGAGAGAGGAGTGATTGGGAAAGAGGACACAGTTGGATCGTGTACTAGGCTC
AGGATTCTTACAAGATTAATTGATTATCCGAACTTCTACTGAAATTTGCCTGGTTAGATCTCTCT
ATAGAGGTATTATTTGGTCTGAAATTTTTTCTTCAGGGAGGAGCTGGGCTC
Found at i:224087 original size:20 final size:22
Alignment explanation
Indices: 224058--224124 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
224048 ATAATACGAT
224058 AATAATATAAAAATA-ATTAAAA
1 AATAA-ATAAAAATATATTAAAA
*
224080 TAT-AATAAAAATTATATATAAAA
1 AATAAATAAAAA-TATAT-TAAAA
224103 AATAAATATAAAATATATTAAA
1 AATAAATA-AAAATATATTAAA
224125 TTTTATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
20 7 0.18
21 3 0.08
22 4 0.11
23 11 0.29
24 9 0.24
25 4 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AATAAATAAAAATATATTAAAA
Found at i:224117 original size:11 final size:12
Alignment explanation
Indices: 224059--224119 Score: 67
Period size: 11 Copynumber: 5.2 Consensus size: 12
224049 TAATACGATA
224059 ATAATATAAAA-
1 ATAATATAAAAT
224070 ATAAT-TAAAAT
1 ATAATATAAAAT
224081 ATAATA-AAAAT
1 ATAATATAAAAT
*
224092 -TATATATAAAAA
1 ATA-ATATAAAAT
224104 ATAAATATAAAAT
1 AT-AATATAAAAT
224117 ATA
1 ATA
224120 TTAAATTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
10 7 0.17
11 18 0.43
12 5 0.12
13 11 0.26
14 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:224131 original size:36 final size:33
Alignment explanation
Indices: 224062--224147 Score: 91
Period size: 36 Copynumber: 2.5 Consensus size: 33
224052 TACGATAATA
224062 ATATAAAAATAATTAAAATATAATAAAAATTAT
1 ATATAAAAATAATTAAAATATAATAAAAATTAT
* **
224095 ATATAAAAAATAAATATAAAATATATTAAATTTTAT
1 ATAT-AAAAAT-AAT-TAAAATATAATAAAAATTAT
* *
224131 ATAATATAAATTATTAA
1 AT-ATAAAAATAATTAA
224148 TATTTTAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
33 4 0.09
34 9 0.20
35 5 0.11
36 24 0.55
37 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (33 bp):
ATATAAAAATAATTAAAATATAATAAAAATTAT
Done.