genome.fa.s1680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1680
Parameters: 2 7 7 80 10 50 1000
Length:  33205

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2542--2618	21	3.7	21	89	3	111	37	12	14	35	1.84
2654--2721	19	3.9	19	78	21	85	35	11	14	38	1.83
2675--2699	13	1.9	13	100	0	50	36	16	16	32	1.90
2656--2718	32	2.0	32	96	0	117	34	12	15	36	1.86
2743--2807	33	2.0	33	87	0	94	27	15	13	43	1.85
5140--5256	51	2.4	48	78	17	125	29	23	11	35	1.91
5238--5314	27	2.8	27	86	2	100	23	31	19	25	1.98
5267--5446	80	2.3	80	86	4	240	25	28	16	29	1.97
5380--5548	51	3.3	51	80	4	194	30	28	10	31	1.90
5168--5738	291	2.0	285	84	4	743	26	26	13	32	1.94
18064--18123	1	60.0	1	76	0	57	88	6	5	0	0.63
18064--18116	18	2.9	18	86	13	81	88	7	3	0	0.61
18064--18123	23	2.8	21	82	9	75	88	6	5	0	0.63
18063--18123	28	2.2	27	80	11	70	86	8	4	0	0.69
18063--18116	27	2.0	27	85	7	74	87	9	3	0	0.67
19117--19620	55	9.0	55	84	9	642	27	30	20	21	1.98
20364--20440	21	3.7	21	89	3	111	35	12	16	35	1.88
20476--20543	19	3.9	19	78	21	85	35	11	14	38	1.83
20497--20521	13	1.9	13	100	0	50	36	16	16	32	1.90
20478--20540	32	2.0	32	96	0	117	34	12	15	36	1.86
20583--20608	13	2.0	13	100	0	52	30	15	15	38	1.88
20563--20629	33	2.0	33	88	0	98	25	14	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27326--27412	20	4.3	20	85	1	111	32	16	10	41	1.82
28708--28773	19	3.8	18	72	24	70	31	10	18	39	1.85
28711--28781	32	2.2	32	94	0	124	32	11	18	38	1.86
28826--28850	13	1.9	13	100	0	50	32	16	16	36	1.90
28859--28987	52	2.5	52	94	0	231	35	17	18	28	1.93

Tables:   1

The End!